AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001068.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001068.01.T01 MTR_1g029840 95.277 487 23 0 1 487 1 487 0.0 956
MsG0180001068.01.T01 MTR_1g029840 88.958 480 53 0 8 487 8 487 0.0 879
MsG0180001068.01.T01 MTR_3g088150 78.378 481 104 0 6 486 8 488 0.0 806
MsG0180001068.01.T01 MTR_8g094600 66.529 484 162 0 3 486 56 539 0.0 689
MsG0180001068.01.T01 MTR_8g076480 50.111 451 225 0 20 470 13 463 4.52e-166 479
MsG0180001068.01.T01 MTR_2g097950 47.599 479 248 1 11 486 15 493 1.49e-156 456
MsG0180001068.01.T01 MTR_4g065040 52.423 454 213 1 20 470 9 462 3.14e-147 431
MsG0180001068.01.T01 MTR_2g097950 45.168 476 229 2 11 486 15 458 1.80e-139 411
MsG0180001068.01.T01 MTR_1222s0010 36.220 381 231 5 19 395 8 380 2.79e-79 263
MsG0180001068.01.T01 MTR_1314s0010 36.982 338 203 4 116 445 1 336 1.13e-73 237
MsG0180001068.01.T01 MTR_2g034160 25.111 450 305 10 34 466 106 540 9.89e-37 144
MsG0180001068.01.T01 MTR_4g106510 29.640 361 239 8 95 445 130 485 1.41e-35 139
MsG0180001068.01.T01 MTR_3g078550 29.917 361 238 7 95 445 100 455 2.96e-35 138
MsG0180001068.01.T01 MTR_3g078550 29.917 361 238 7 95 445 130 485 3.82e-35 138
MsG0180001068.01.T01 MTR_2g067660 26.877 413 283 10 42 445 112 514 8.22e-35 137
MsG0180001068.01.T01 MTR_3g078490 29.178 353 233 8 103 445 170 515 4.22e-33 132
MsG0180001068.01.T01 MTR_4g107040 29.446 343 232 7 111 446 196 535 1.76e-30 125
MsG0180001068.01.T01 MTR_8g064170 28.256 407 276 10 48 446 134 532 5.00e-30 124
MsG0180001068.01.T01 MTR_3g078170 30.321 343 229 8 111 446 194 533 5.33e-30 124
MsG0180001068.01.T01 MTR_8g083530 28.009 457 284 19 12 446 61 494 1.26e-28 119
MsG0180001068.01.T01 MTR_6g086300 28.857 350 227 11 110 446 153 493 6.63e-26 111
MsG0180001068.01.T01 MTR_6g086300 28.857 350 227 11 110 446 153 493 6.63e-26 111
MsG0180001068.01.T01 MTR_4g131180 25.111 450 300 12 1 429 35 468 1.60e-24 107
MsG0180001068.01.T01 MTR_6g086340 27.551 392 250 15 77 445 110 490 5.55e-24 105
MsG0180001068.01.T01 MTR_4g131180 24.773 440 294 12 1 419 35 458 2.29e-21 97.4
MsG0180001068.01.T01 MTR_8g064170 26.238 404 256 12 48 446 134 500 4.86e-21 96.7
MsG0180001068.01.T01 MTR_1g014320 24.494 445 309 11 1 429 35 468 6.61e-21 96.3
MsG0180001068.01.T01 MTR_2g009750 27.390 387 233 14 48 406 79 445 1.04e-20 95.5
MsG0180001068.01.T01 MTR_2g009750 27.390 387 233 14 48 406 80 446 1.23e-20 95.5
MsG0180001068.01.T01 MTR_4g020720 42.308 130 66 4 183 306 116 242 1.63e-20 92.0
MsG0180001068.01.T01 MTR_2g009750 27.132 387 235 14 48 406 80 447 3.92e-20 94.0
MsG0180001068.01.T01 MTR_3g078170 29.961 257 172 7 111 360 194 449 4.18e-20 93.6
MsG0180001068.01.T01 MTR_8g083520 25.000 396 232 14 73 446 20 372 4.12e-19 89.7
MsG0180001068.01.T01 MTR_8g083520 25.000 396 232 14 73 446 100 452 8.25e-19 89.4
MsG0180001068.01.T01 MTR_4g093170 26.623 308 205 8 113 406 174 474 2.57e-18 88.6
MsG0180001068.01.T01 MTR_2g042330 23.615 343 244 8 113 442 152 489 1.20e-16 83.2
MsG0180001068.01.T01 MTR_3g078490 33.918 171 105 4 112 277 147 314 3.11e-16 80.9
MsG0180001068.01.T01 MTR_3g078170 28.992 238 161 7 111 341 194 430 1.16e-15 79.7
MsG0180001068.01.T01 MTR_3g078170 28.992 238 161 7 111 341 194 430 1.25e-15 79.7
MsG0180001068.01.T01 MTR_4g020710 52.941 68 32 0 301 368 16 83 1.96e-15 73.6
MsG0180001068.01.T01 MTR_8g083530 30.268 261 154 12 12 259 61 306 3.78e-13 71.2
MsG0180001068.01.T01 MTR_1399s0020 29.688 192 128 5 252 440 145 332 4.46e-13 70.9
MsG0180001068.01.T01 MTR_1690s0010 26.786 280 173 11 48 312 83 345 3.82e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001068.01.T01 AT1G44170 70.146 479 143 0 8 486 4 482 0.0 726
MsG0180001068.01.T01 AT1G44170 70.146 479 143 0 8 486 4 482 0.0 726
MsG0180001068.01.T01 AT1G44170 73.966 411 107 0 76 486 9 419 0.0 660
MsG0180001068.01.T01 AT4G34240 65.489 481 166 0 6 486 65 545 0.0 650
MsG0180001068.01.T01 AT4G34240 65.489 481 166 0 6 486 50 530 0.0 650
MsG0180001068.01.T01 AT4G34240 70.823 401 117 0 86 486 3 403 0.0 585
MsG0180001068.01.T01 AT4G36250 46.934 473 248 1 20 489 12 484 1.19e-162 471
MsG0180001068.01.T01 AT4G34240 65.644 326 112 0 6 331 65 390 7.68e-150 434
MsG0180001068.01.T01 AT3G66658 27.294 436 291 9 34 451 106 533 1.79e-40 154
MsG0180001068.01.T01 AT3G66658 26.778 478 315 11 34 484 106 575 2.54e-40 154
MsG0180001068.01.T01 AT1G74920 29.781 366 241 9 95 449 125 485 2.68e-39 149
MsG0180001068.01.T01 AT1G74920 29.781 366 241 9 95 449 130 490 3.03e-39 149
MsG0180001068.01.T01 AT1G23800 28.090 445 302 11 12 446 89 525 1.24e-35 140
MsG0180001068.01.T01 AT1G79440 27.842 431 290 11 25 445 101 520 7.80e-35 137
MsG0180001068.01.T01 AT3G48170 28.488 344 231 7 112 445 147 485 2.61e-34 135
MsG0180001068.01.T01 AT3G48000 27.434 452 296 14 12 446 93 529 3.71e-29 121
MsG0180001068.01.T01 AT3G24503 27.114 343 236 9 113 446 155 492 5.17e-27 114
MsG0180001068.01.T01 AT2G24270 24.888 446 306 13 1 429 75 508 7.92e-22 99.4
MsG0180001068.01.T01 AT2G24270 24.888 446 306 13 1 429 35 468 7.99e-22 99.0
MsG0180001068.01.T01 AT2G24270 24.888 446 306 13 1 429 35 468 1.02e-21 98.6
MsG0180001068.01.T01 AT2G24270 24.888 446 306 13 1 429 35 468 1.02e-21 98.6
MsG0180001068.01.T01 AT1G54100 22.714 339 246 7 116 442 154 488 4.79e-20 93.6
MsG0180001068.01.T01 AT1G54100 22.714 339 246 7 116 442 154 488 4.79e-20 93.6
MsG0180001068.01.T01 AT2G14170 25.450 389 255 15 78 448 109 480 3.85e-18 87.8
MsG0180001068.01.T01 AT2G14170 25.648 386 252 15 78 445 218 586 7.47e-18 87.4
MsG0180001068.01.T01 AT2G14170 25.797 345 224 13 78 406 218 546 1.26e-16 83.2
MsG0180001068.01.T01 AT1G23800 28.627 255 169 7 12 259 89 337 3.94e-16 80.9

Find 130 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATGATGACAAAGTTTC+TGG 0.156174 1:-15544999 MsG0180001068.01.T01:CDS
GCTATAATTCGTGCCTTATT+TGG 0.169978 1:-15543546 MsG0180001068.01.T01:CDS
CGATCGCTTGATAAAGCTTT+TGG 0.222465 1:-15545018 MsG0180001068.01.T01:CDS
TTATCACTTGATCCAGTAAT+TGG 0.232948 1:-15546126 MsG0180001068.01.T01:CDS
GCAATTCATACTTTGCCTTT+TGG 0.268675 1:-15543744 MsG0180001068.01.T01:CDS
ATTCCAAGACAAAGAATTCT+AGG 0.275622 1:+15543519 None:intergenic
TGATTCAAATATCAACTTAC+AGG 0.279419 1:-15545548 MsG0180001068.01.T01:intron
AATTCTAGGCCTTCCAAATA+AGG 0.292738 1:+15543533 None:intergenic
GCTGCAATAGCCCCAATTAC+TGG 0.305450 1:+15546114 None:intergenic
ATTTATCATGACGAATGAAT+TGG 0.307322 1:-15549569 MsG0180001068.01.T01:exon
TCGTAGAAATGGAGGATAAA+TGG 0.312765 1:+15549634 None:intergenic
TTTGTTGTTATGATATAATC+TGG 0.316109 1:+15545235 None:intergenic
GATTAGCCCTACTGTTCTAT+TGG 0.328993 1:-15544829 MsG0180001068.01.T01:CDS
CATTTGGCAAGTATTTATTC+AGG 0.329683 1:-15543482 MsG0180001068.01.T01:CDS
AGCTTTGATGTGATAAATTC+AGG 0.353189 1:-15544444 MsG0180001068.01.T01:CDS
GACTGTTTCTGCTGGTGGTT+TGG 0.353589 1:-15544358 MsG0180001068.01.T01:CDS
CATCAATCTCATCTTTGTAT+TGG 0.356661 1:+15543596 None:intergenic
CTAACATCAATTGGACAAAA+AGG 0.356868 1:+15543373 None:intergenic
GTGGGTAGGGTGGGTGATGA+GGG 0.359789 1:+15549734 None:intergenic
TCCAGCCACATCATCGTTGC+TGG 0.362338 1:-15546055 MsG0180001068.01.T01:CDS
GTTTCTGGTAAGATTGTTCA+TGG 0.366193 1:-15544984 MsG0180001068.01.T01:CDS
CCTCCAAGCTCCAGCACAAC+TGG 0.367836 1:+15545589 None:intergenic
ACAGGTTGAGTTCGTAGAAA+TGG 0.381322 1:+15549623 None:intergenic
CTGAGAGAAACATTTGGTTC+TGG 0.383711 1:-15549496 MsG0180001068.01.T01:CDS
GGTAGGGTGGGTGATGAGGG+TGG 0.384972 1:+15549737 None:intergenic
AGAAAACTTATTACCAACTT+AGG 0.393047 1:+15545202 None:intergenic
ATGTTGTGATGTGGGTAGGG+TGG 0.398165 1:+15549724 None:intergenic
CTCATCTTTGTATTGGTGTA+TGG 0.403429 1:+15543603 None:intergenic
TATCACTTGATCCAGTAATT+GGG 0.409496 1:-15546125 MsG0180001068.01.T01:CDS
ACACCAGTTGTGCTGGAGCT+TGG 0.416382 1:-15545592 MsG0180001068.01.T01:CDS
AAATGGAGGATAAATGGATT+TGG 0.420295 1:+15549640 None:intergenic
TGTGGGTAGGGTGGGTGATG+AGG 0.421750 1:+15549733 None:intergenic
ATATTTGAATCAACAACAAC+TGG 0.421798 1:+15545559 None:intergenic
AGGCCTAGAATTCTTTGTCT+TGG 0.422350 1:-15543522 MsG0180001068.01.T01:CDS
GCATGACCACTAACATCAAT+TGG 0.423275 1:+15543364 None:intergenic
CTTAATTCGTACCGTGATGA+TGG 0.427177 1:+15544752 None:intergenic
TGTTGTGATGTGGGTAGGGT+GGG 0.439445 1:+15549725 None:intergenic
AGATAATAACCGAACCTCAT+AGG 0.441099 1:+15549345 None:intergenic
ATAATGAGCGAAGAGATATT+TGG 0.444128 1:-15544786 MsG0180001068.01.T01:CDS
GTTATGTTGTGATGTGGGTA+GGG 0.447683 1:+15549721 None:intergenic
TCGTTGCTGGCAAAACTGTT+AGG 0.451153 1:-15546042 MsG0180001068.01.T01:CDS
TTTGTTAAGACTGTTTCTGC+TGG 0.453254 1:-15544366 MsG0180001068.01.T01:CDS
GATTGTTCATGGAGGTGAAA+AGG 0.454910 1:-15544973 MsG0180001068.01.T01:CDS
GATACTATTTCAGCTGAAGA+AGG 0.460660 1:+15546514 None:intergenic
GCATTGGATGGCTCCGGAAA+AGG 0.463175 1:-15546659 MsG0180001068.01.T01:intron
ATTGCAAGGTGGCAACTAGA+AGG 0.464455 1:-15545306 MsG0180001068.01.T01:intron
GGAGTAGGTGAGAGTGGAGT+GGG 0.469025 1:-15543720 MsG0180001068.01.T01:CDS
GGTTATGTTGTGATGTGGGT+AGG 0.472641 1:+15549720 None:intergenic
CTGTATTACTGCAACAAAAG+TGG 0.474056 1:-15545963 MsG0180001068.01.T01:CDS
ATATATGCAGCAAGAGGCTT+CGG 0.476234 1:+15544420 None:intergenic
GTGGGTGATGAGGGTGGTAC+CGG 0.481260 1:+15549743 None:intergenic
GCACCTTACACCAGTTGTGC+TGG 0.485174 1:-15545599 MsG0180001068.01.T01:CDS
AATGAACTGAGAGAAACATT+TGG 0.485463 1:-15549502 MsG0180001068.01.T01:CDS
GTTAAGACTGTTTCTGCTGG+TGG 0.490673 1:-15544363 MsG0180001068.01.T01:CDS
CTCATCTATAAGAGTTGTTG+AGG 0.493781 1:-15546004 MsG0180001068.01.T01:CDS
TCTTCTTTATTTCATATCAA+AGG 0.493951 1:+15543129 None:intergenic
CCAGTTGTGCTGGAGCTTGG+AGG 0.497518 1:-15545589 MsG0180001068.01.T01:CDS
CACTCAAGGAATTGAAGCAT+TGG 0.498600 1:-15546675 MsG0180001068.01.T01:CDS
ATGTTATATACTACGTTTCG+TGG 0.499625 1:+15549782 None:intergenic
GAGGATAAAGTAGATTATAC+AGG 0.501435 1:+15549605 None:intergenic
GAAGGATAATCGCTGGAAAG+TGG 0.505649 1:-15545288 MsG0180001068.01.T01:CDS
CTCATGTAAAACTGCACTCA+AGG 0.507865 1:-15546689 MsG0180001068.01.T01:CDS
AATATGTTTGATATTGAAGC+GGG 0.509498 1:-15549538 MsG0180001068.01.T01:CDS
GAGATTGATGAAGGCTCTCA+TGG 0.510072 1:-15543583 MsG0180001068.01.T01:CDS
GCTCCAGCACAACTGGTGTA+AGG 0.510660 1:+15545596 None:intergenic
GGAAAGTGGGGTTGCAACAA+TGG 0.510938 1:-15545274 MsG0180001068.01.T01:CDS
TACAAAGATGAGATTGATGA+AGG 0.513208 1:-15543592 MsG0180001068.01.T01:CDS
AAGAGTGGCACGCATTGTTA+TGG 0.524412 1:-15545635 MsG0180001068.01.T01:CDS
AAGGATAATCGCTGGAAAGT+GGG 0.525366 1:-15545287 MsG0180001068.01.T01:CDS
ATTGAAGCATTGGATGGCTC+CGG 0.525858 1:-15546665 MsG0180001068.01.T01:CDS
CAAAACTCAACTCGCAAACA+AGG 0.526505 1:+15543177 None:intergenic
AAAAGACTATGCTCCTAAGT+TGG 0.527792 1:-15545215 MsG0180001068.01.T01:intron
TAATTCGTGCCTTATTTGGA+AGG 0.529840 1:-15543542 MsG0180001068.01.T01:CDS
CTTGTGCTTGAGAATAAAGT+AGG 0.532740 1:-15543408 MsG0180001068.01.T01:three_prime_UTR
ATGAAGGCTCTCATGGGTGG+TGG 0.534832 1:-15543576 MsG0180001068.01.T01:CDS
TCTCAGTTCATTCACCAGCA+TGG 0.536562 1:+15549513 None:intergenic
GCCAGCAACGATGATGTGGC+TGG 0.536814 1:+15546054 None:intergenic
TTTGGAGGAGTAGGTGAGAG+TGG 0.537231 1:-15543726 MsG0180001068.01.T01:CDS
GGGACATCCAATAGAACAGT+AGG 0.538615 1:+15544822 None:intergenic
CTCTCACCTACTCCTCCAAA+AGG 0.540508 1:+15543729 None:intergenic
CGTTGGTTATGTTGTGATGT+GGG 0.543279 1:+15549716 None:intergenic
GGTGATGAGGGTGGTACCGG+TGG 0.543320 1:+15549746 None:intergenic
TGTGTTTGAAGAGAAAGAAG+AGG 0.543838 1:+15549668 None:intergenic
TCTTGAAACTGTCGCCTATG+AGG 0.543885 1:-15549359 MsG0180001068.01.T01:intron
GTAATTGGGGCTATTGCAGC+TGG 0.545653 1:-15546111 MsG0180001068.01.T01:CDS
ATCACTTGATCCAGTAATTG+GGG 0.548933 1:-15546124 MsG0180001068.01.T01:CDS
ACGTTGGTTATGTTGTGATG+TGG 0.551404 1:+15549715 None:intergenic
ATCTTTGTATTGGTGTATGG+TGG 0.551950 1:+15543606 None:intergenic
TTATTCTCAAGCACAAGTCA+TGG 0.557388 1:+15543414 None:intergenic
TCATCTATAAGAGTTGTTGA+GGG 0.559074 1:-15546003 MsG0180001068.01.T01:CDS
AGGAGTAGGTGAGAGTGGAG+TGG 0.559793 1:-15543721 MsG0180001068.01.T01:CDS
TGTATTACTGCAACAAAAGT+GGG 0.565567 1:-15545962 MsG0180001068.01.T01:CDS
GCAACTAGAAGGATAATCGC+TGG 0.565895 1:-15545295 MsG0180001068.01.T01:CDS
ATGTTGTACACAATGTAAAG+AGG 0.566369 1:+15543226 None:intergenic
GTAAATATATATGCAGCAAG+AGG 0.571237 1:+15544414 None:intergenic
TTAATTCGTACCGTGATGAT+GGG 0.573561 1:+15544753 None:intergenic
ACCGTGATGATGGGAAGTAA+TGG 0.581585 1:+15544762 None:intergenic
TTAGTAGTAGTGTATGACGT+TGG 0.585891 1:+15549699 None:intergenic
CAAGGAATTGAAGCATTGGA+TGG 0.593249 1:-15546671 MsG0180001068.01.T01:CDS
TATTGAAGCGGGATCCATGC+TGG 0.595201 1:-15549527 MsG0180001068.01.T01:CDS
CATAGGCGACAGTTTCAAGA+GGG 0.597623 1:+15549362 None:intergenic
TAGGCGACAGTTTCAAGAGG+GGG 0.599399 1:+15549364 None:intergenic
GAATATGTTTGATATTGAAG+CGG 0.599467 1:-15549539 MsG0180001068.01.T01:CDS
AAATTGGACAATAAAATACA+AGG 0.604748 1:+15543456 None:intergenic
TTTATATATACTCTCACAGA+AGG 0.605018 1:-15543323 MsG0180001068.01.T01:three_prime_UTR
AGGATAATCGCTGGAAAGTG+GGG 0.609873 1:-15545286 MsG0180001068.01.T01:CDS
GTGGCTGGAGAAATTTCTGA+TGG 0.612827 1:+15546069 None:intergenic
TATTGCAGCTGGTAATGCTG+TGG 0.620073 1:-15546100 MsG0180001068.01.T01:CDS
AAAACTGTTAGGAGAATACA+TGG 0.624224 1:-15546031 MsG0180001068.01.T01:CDS
TCCATTACTTCCCATCATCA+CGG 0.627032 1:-15544763 MsG0180001068.01.T01:intron
CATATCTAAGTCAAGACCAC+CGG 0.630959 1:-15549762 MsG0180001068.01.T01:five_prime_UTR
GGTTGAGTTCGTAGAAATGG+AGG 0.633237 1:+15549626 None:intergenic
AATTAGAGCAAGCTAGCGGA+GGG 0.635085 1:-15543249 MsG0180001068.01.T01:three_prime_UTR
TACAAACGACAAGAAGCTCA+AGG 0.637163 1:-15544394 MsG0180001068.01.T01:CDS
CAATTAGAGCAAGCTAGCGG+AGG 0.638965 1:-15543250 MsG0180001068.01.T01:three_prime_UTR
GAAATAGTATCTGAACCACT+TGG 0.643478 1:-15546502 MsG0180001068.01.T01:CDS
AGTGGAGTGGGTGCATACCA+TGG 0.646385 1:-15543708 MsG0180001068.01.T01:CDS
GGACATCCAATAGAACAGTA+GGG 0.647357 1:+15544823 None:intergenic
ATGATCAACACAACTCCAAG+TGG 0.650557 1:+15546487 None:intergenic
GCTTTATCAAGCGATCGAAG+TGG 0.653845 1:+15545024 None:intergenic
TTGTGTTGATCATCTCTGCA+TGG 0.653993 1:-15546477 MsG0180001068.01.T01:CDS
AGATTGATGAAGGCTCTCAT+GGG 0.665748 1:-15543582 MsG0180001068.01.T01:CDS
TCATAGGCGACAGTTTCAAG+AGG 0.669261 1:+15549361 None:intergenic
CTCATTATCAGAGAATCACG+CGG 0.673973 1:+15544801 None:intergenic
TTGATGAAGGCTCTCATGGG+TGG 0.678752 1:-15543579 MsG0180001068.01.T01:CDS
ATAAATCAAGAAACAGCGAG+AGG 0.701264 1:+15549586 None:intergenic
GTACAATTAGAGCAAGCTAG+CGG 0.701696 1:-15543253 MsG0180001068.01.T01:three_prime_UTR
TCTGGTAAGATTGTTCATGG+AGG 0.703693 1:-15544981 MsG0180001068.01.T01:CDS
ATAGGCGACAGTTTCAAGAG+GGG 0.706757 1:+15549363 None:intergenic
TCATTATCAGAGAATCACGC+GGG 0.717383 1:+15544802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTTTTTTTTTTT+TGG - Chr1:15543704-15543723 MsG0180001068.01.T01:CDS 0.0%
!!! AAATATTTTAACATACAAAA+TGG + Chr1:15546446-15546465 None:intergenic 10.0%
!!! AATTAAAATTTGCATTTTTT+TGG - Chr1:15544429-15544448 MsG0180001068.01.T01:CDS 10.0%
!!! TAATAATTTTTTTCATATCA+TGG + Chr1:15545892-15545911 None:intergenic 10.0%
!!! TTAAGTATATCTTTTTAAAA+TGG - Chr1:15544576-15544595 MsG0180001068.01.T01:intron 10.0%
!! AACATAAAAGCTTATTATTT+GGG + Chr1:15544137-15544156 None:intergenic 15.0%
!! ATACTAATAATAATAGAAGA+AGG + Chr1:15543587-15543606 None:intergenic 15.0%
!! ATGAAATAATATCATTACTA+TGG + Chr1:15545383-15545402 None:intergenic 15.0%
!! ATTCATTTCATTAGAAAATA+TGG + Chr1:15548854-15548873 None:intergenic 15.0%
!! GAAATTTATTCAAATAAAAG+TGG - Chr1:15548918-15548937 MsG0180001068.01.T01:intron 15.0%
!! TAACATAAAAGCTTATTATT+TGG + Chr1:15544138-15544157 None:intergenic 15.0%
!! TTCATTTCATTAGAAAATAT+GGG + Chr1:15548853-15548872 None:intergenic 15.0%
!!! ATTTGTGTTATTTTAGTTTT+TGG - Chr1:15545547-15545566 MsG0180001068.01.T01:intron 15.0%
!!! CAAACATTATCTTTAATTTT+GGG + Chr1:15545214-15545233 None:intergenic 15.0%
!!! CATTTATTGTTGTTATTTAT+GGG - Chr1:15543749-15543768 MsG0180001068.01.T01:CDS 15.0%
!!! TAAAAATCCAAACTTAATTT+TGG + Chr1:15544395-15544414 None:intergenic 15.0%
!!! TATTTTATTGTCCAATTTTT+TGG - Chr1:15549440-15549459 MsG0180001068.01.T01:CDS 15.0%
!!! TCATTTATTGTTGTTATTTA+TGG - Chr1:15543748-15543767 MsG0180001068.01.T01:CDS 15.0%
!!! TTATTAGTATTATTCTTTTG+TGG - Chr1:15543597-15543616 MsG0180001068.01.T01:CDS 15.0%
!! AAATTGGACAATAAAATACA+AGG + Chr1:15549438-15549457 None:intergenic 20.0%
!! ACTATTTAACAATACAAAGT+TGG + Chr1:15544765-15544784 None:intergenic 20.0%
!! ATAAGTTCAAACCAAAAAAT+TGG + Chr1:15549454-15549473 None:intergenic 20.0%
!! ATCTGAATTCAAATAAATGA+TGG - Chr1:15544524-15544543 MsG0180001068.01.T01:intron 20.0%
!! ATGTACTAATATTCATAAGT+TGG + Chr1:15544226-15544245 None:intergenic 20.0%
!! CCAAAATTAAAGATAATGTT+TGG - Chr1:15545212-15545231 MsG0180001068.01.T01:intron 20.0%
!! TATGGTTTATAATTCTGAAT+TGG - Chr1:15547002-15547021 MsG0180001068.01.T01:intron 20.0%
!! TATTTATATCTTCTCATACT+TGG - Chr1:15546146-15546165 MsG0180001068.01.T01:intron 20.0%
!! TGTCAAAAATTGTATTGTTA+TGG - Chr1:15548764-15548783 MsG0180001068.01.T01:intron 20.0%
!! TTAAAGATAATGTTTGGATT+TGG - Chr1:15545218-15545237 MsG0180001068.01.T01:CDS 20.0%
!! TTAACGATTAAGATATTGTT+AGG + Chr1:15543660-15543679 None:intergenic 20.0%
!! TTACTCAAATAAGTAATTGT+TGG - Chr1:15547218-15547237 MsG0180001068.01.T01:intron 20.0%
!! TTTATTTAGTGTTTAGTGTT+TGG - Chr1:15547742-15547761 MsG0180001068.01.T01:intron 20.0%
!!! ACATTTTGAATACTTTTAAC+AGG - Chr1:15545946-15545965 MsG0180001068.01.T01:CDS 20.0%
!!! ATCATGCATTTATTTTCATT+TGG - Chr1:15549393-15549412 MsG0180001068.01.T01:CDS 20.0%
!!! ATTTTATGGAAAGAATCAAT+TGG - Chr1:15547810-15547829 MsG0180001068.01.T01:intron 20.0%
!!! CATTTTGAATACTTTTAACA+GGG - Chr1:15545947-15545966 MsG0180001068.01.T01:CDS 20.0%
!!! CCAAACATTATCTTTAATTT+TGG + Chr1:15545215-15545234 None:intergenic 20.0%
!!! TAAGTAATTGTTGGTTTTTT+AGG - Chr1:15547227-15547246 MsG0180001068.01.T01:intron 20.0%
!!! TCTTCTTTATTTCATATCAA+AGG + Chr1:15549765-15549784 None:intergenic 20.0%
!!! TTTGATAGCAAACTAATATT+AGG - Chr1:15545843-15545862 MsG0180001068.01.T01:intron 20.0%
!!! TTTGTTGTTATGATATAATC+TGG + Chr1:15547659-15547678 None:intergenic 20.0%
! AAGTTTATTAAAATGATCCG+TGG - Chr1:15547185-15547204 MsG0180001068.01.T01:intron 25.0%
! AAGTTTGATAGAAAAACAGT+TGG - Chr1:15545975-15545994 MsG0180001068.01.T01:CDS 25.0%
! AATAAGTCAATTCATTCAGA+CGG - Chr1:15544289-15544308 MsG0180001068.01.T01:intron 25.0%
! AATATGTTTGATATTGAAGC+GGG - Chr1:15543353-15543372 MsG0180001068.01.T01:three_prime_UTR 25.0%
! AGAAAACTTATTACCAACTT+AGG + Chr1:15547692-15547711 None:intergenic 25.0%
! AGTAAATTTAAGTCTTAGTG+AGG + Chr1:15547555-15547574 None:intergenic 25.0%
! AGTATAATAATTGAATGCAC+AGG + Chr1:15545732-15545751 None:intergenic 25.0%
! AGTTTAAAAGCTTAAAAAGC+TGG + Chr1:15543460-15543479 None:intergenic 25.0%
! ATATTTGAATCAACAACAAC+TGG + Chr1:15547335-15547354 None:intergenic 25.0%
! ATTTATCATGACGAATGAAT+TGG - Chr1:15543322-15543341 MsG0180001068.01.T01:three_prime_UTR 25.0%
! CAAAAATTGTATTGTTATGG+AGG - Chr1:15548767-15548786 MsG0180001068.01.T01:intron 25.0%
! CATATAAAAATGACATTCAC+AGG + Chr1:15548634-15548653 None:intergenic 25.0%
! GAATATGTTTGATATTGAAG+CGG - Chr1:15543352-15543371 MsG0180001068.01.T01:three_prime_UTR 25.0%
! GTATTTAACGAGTATTATTC+TGG - Chr1:15547405-15547424 MsG0180001068.01.T01:intron 25.0%
! TACTATGGTTTGAATACTTT+AGG + Chr1:15545368-15545387 None:intergenic 25.0%
! TACTTGAACTTAAAATTGCA+AGG - Chr1:15547571-15547590 MsG0180001068.01.T01:intron 25.0%
! TCTTTCATGATTTGACAAAT+AGG - Chr1:15545633-15545652 MsG0180001068.01.T01:CDS 25.0%
! TGATTCAAATATCAACTTAC+AGG - Chr1:15547343-15547362 MsG0180001068.01.T01:intron 25.0%
! TGTAGTTTCCTTATAACAAA+AGG + Chr1:15548283-15548302 None:intergenic 25.0%
! TGTTAAATAGTTCCATGATA+TGG - Chr1:15544774-15544793 MsG0180001068.01.T01:CDS 25.0%
! TTGTACTAAATACCATATCA+TGG + Chr1:15544789-15544808 None:intergenic 25.0%
! TTTATATATACTCTCACAGA+AGG - Chr1:15549568-15549587 MsG0180001068.01.T01:exon 25.0%
! TTTCTGATAGAATAACCTAA+GGG - Chr1:15547026-15547045 MsG0180001068.01.T01:intron 25.0%
!! ACTGAATTAGAGCAATTTTA+TGG - Chr1:15547796-15547815 MsG0180001068.01.T01:intron 25.0%
!! CATTTTATCTATTTCCTAGT+TGG + Chr1:15548318-15548337 None:intergenic 25.0%
!! TTTTCTGATAGAATAACCTA+AGG - Chr1:15547025-15547044 MsG0180001068.01.T01:intron 25.0%
!!! AAATTCCACCTTTTGTTATA+AGG - Chr1:15548272-15548291 MsG0180001068.01.T01:intron 25.0%
!!! ACTTTGTTTTCTTAAATTCC+AGG - Chr1:15548037-15548056 MsG0180001068.01.T01:intron 25.0%
!!! AGTTTGTTTTTGAGAGTTAT+AGG - Chr1:15544048-15544067 MsG0180001068.01.T01:intron 25.0%
!!! ATCTACTATCACTTTTTGAA+AGG - Chr1:15543985-15544004 MsG0180001068.01.T01:intron 25.0%
!!! ATTTTTTGCATTTATGCATG+TGG - Chr1:15544339-15544358 MsG0180001068.01.T01:CDS 25.0%
!!! CAAGATATTTTAATCCAACT+AGG - Chr1:15548301-15548320 MsG0180001068.01.T01:intron 25.0%
!!! TCTACTATCACTTTTTGAAA+GGG - Chr1:15543986-15544005 MsG0180001068.01.T01:intron 25.0%
!!! TGAACAAATTGTTATTTTCG+TGG - Chr1:15544866-15544885 MsG0180001068.01.T01:intron 25.0%
AAAACTGTTAGGAGAATACA+TGG - Chr1:15546860-15546879 MsG0180001068.01.T01:intron 30.0%
AAACCATAAAAGAAAACCAG+AGG + Chr1:15546990-15547009 None:intergenic 30.0%
AAAGACTGAAAGAGAGATTA+AGG + Chr1:15547384-15547403 None:intergenic 30.0%
AACCAACTTAAAAGCTGATT+TGG + Chr1:15548684-15548703 None:intergenic 30.0%
AACCATAAAAGAAAACCAGA+GGG + Chr1:15546989-15547008 None:intergenic 30.0%
AAGTATAACTTACTACAGTG+AGG - Chr1:15548825-15548844 MsG0180001068.01.T01:intron 30.0%
AAGTGTAACAACACATATTG+TGG + Chr1:15545479-15545498 None:intergenic 30.0%
AATATCGTCAGTATAGATTG+AGG + Chr1:15546717-15546736 None:intergenic 30.0%
AATCTTCATCATTCTACTGT+TGG + Chr1:15545441-15545460 None:intergenic 30.0%
AATGAACTGAGAGAAACATT+TGG - Chr1:15543389-15543408 MsG0180001068.01.T01:three_prime_UTR 30.0%
AGACGATCCAAAATTAAGTT+TGG - Chr1:15544385-15544404 MsG0180001068.01.T01:CDS 30.0%
AGTTTCCTTATAACAAAAGG+TGG + Chr1:15548280-15548299 None:intergenic 30.0%
ATAAGAAGAGAGTTATTGCA+CGG + Chr1:15545330-15545349 None:intergenic 30.0%
ATAATGAGCGAAGAGATATT+TGG - Chr1:15548105-15548124 MsG0180001068.01.T01:intron 30.0%
ATAGCAACACTTTAGATGTT+CGG - Chr1:15544710-15544729 MsG0180001068.01.T01:intron 30.0%
ATATTCCAAATGTGTGAAAG+TGG - Chr1:15544481-15544500 MsG0180001068.01.T01:intron 30.0%
ATCTTCATCATTCTACTGTT+GGG + Chr1:15545440-15545459 None:intergenic 30.0%
ATGAATGAATGATTACCCTT+AGG + Chr1:15547044-15547063 None:intergenic 30.0%
ATGTTGTACACAATGTAAAG+AGG + Chr1:15549668-15549687 None:intergenic 30.0%
ATTCCAAGACAAAGAATTCT+AGG + Chr1:15549375-15549394 None:intergenic 30.0%
CACATAAACTAAGAGATTCA+AGG + Chr1:15548609-15548628 None:intergenic 30.0%
CAGTCTATTTATCTGTTATG+AGG - Chr1:15544604-15544623 MsG0180001068.01.T01:intron 30.0%
CATCAATCTCATCTTTGTAT+TGG + Chr1:15549298-15549317 None:intergenic 30.0%
CATTTGGCAAGTATTTATTC+AGG - Chr1:15549409-15549428 MsG0180001068.01.T01:CDS 30.0%
CGATTAAGATATTGTTAGGT+CGG + Chr1:15543656-15543675 None:intergenic 30.0%
CTAACATCAATTGGACAAAA+AGG + Chr1:15549521-15549540 None:intergenic 30.0%
GAGGATAAAGTAGATTATAC+AGG + Chr1:15543289-15543308 None:intergenic 30.0%
GCTATTTAACAACACAATGT+TGG + Chr1:15544686-15544705 None:intergenic 30.0%
GTAAATATATATGCAGCAAG+AGG + Chr1:15548480-15548499 None:intergenic 30.0%
GTCTTGAATTATCTACACTA+TGG - Chr1:15545277-15545296 MsG0180001068.01.T01:CDS 30.0%
TAAACTAAGAGATTCAAGGA+TGG + Chr1:15548605-15548624 None:intergenic 30.0%
TAAATGCAAAAAATCCCAAC+AGG + Chr1:15544333-15544352 None:intergenic 30.0%
TACAAAGATGAGATTGATGA+AGG - Chr1:15549299-15549318 MsG0180001068.01.T01:intron 30.0%
TACTGAATGTTGCAAAATAG+CGG + Chr1:15546593-15546612 None:intergenic 30.0%
TATAGATTGAGGAAAGAACT+TGG + Chr1:15546706-15546725 None:intergenic 30.0%
TATCACTTGATCCAGTAATT+GGG - Chr1:15546766-15546785 MsG0180001068.01.T01:intron 30.0%
TATTCCAAATGTGTGAAAGT+GGG - Chr1:15544482-15544501 MsG0180001068.01.T01:intron 30.0%
TCAAAAGAACTTGAGTGTTA+AGG + Chr1:15545828-15545847 None:intergenic 30.0%
TCATCTATAAGAGTTGTTGA+GGG - Chr1:15546888-15546907 MsG0180001068.01.T01:intron 30.0%
TGAGTAAATGATATGATCCA+CGG + Chr1:15547205-15547224 None:intergenic 30.0%
TGTAAATAGAAGTTCAGTGA+AGG - Chr1:15548652-15548671 MsG0180001068.01.T01:intron 30.0%
TGTATTACTGCAACAAAAGT+GGG - Chr1:15546929-15546948 MsG0180001068.01.T01:intron 30.0%
TTATCACTTGATCCAGTAAT+TGG - Chr1:15546765-15546784 MsG0180001068.01.T01:intron 30.0%
TTGAACTTAAAATTGCAAGG+TGG - Chr1:15547574-15547593 MsG0180001068.01.T01:intron 30.0%
! AAATGGAGGATAAATGGATT+TGG + Chr1:15543254-15543273 None:intergenic 30.0%
! AGCTTTGATGTGATAAATTC+AGG - Chr1:15548447-15548466 MsG0180001068.01.T01:intron 30.0%
! CATCAAATGAGAATTTTCCA+TGG + Chr1:15549203-15549222 None:intergenic 30.0%
! TTATGGGTCCAGATTTTATT+GGG - Chr1:15543765-15543784 MsG0180001068.01.T01:intron 30.0%
! TTGTTTTCTTAAATTCCAGG+AGG - Chr1:15548040-15548059 MsG0180001068.01.T01:intron 30.0%
! TTTATGGGTCCAGATTTTAT+TGG - Chr1:15543764-15543783 MsG0180001068.01.T01:intron 30.0%
! TTTTGTCCAATTGATGTTAG+TGG - Chr1:15549521-15549540 MsG0180001068.01.T01:CDS 30.0%
! TTTTTACCCCCAATAAAATC+TGG + Chr1:15543776-15543795 None:intergenic 30.0%
!! CTAATATTCATAAGTTGGTC+TGG + Chr1:15544221-15544240 None:intergenic 30.0%
!!! ATGTTTTGACCTGCATTAAA+GGG + Chr1:15546343-15546362 None:intergenic 30.0%
!!! ATTGTTGGTTTTTTAGGCAA+TGG - Chr1:15547233-15547252 MsG0180001068.01.T01:intron 30.0%
!!! CAAATTGTTATTTTCGTGGT+CGG - Chr1:15544870-15544889 MsG0180001068.01.T01:intron 30.0%
!!! CTACTATCACTTTTTGAAAG+GGG - Chr1:15543987-15544006 MsG0180001068.01.T01:intron 30.0%
!!! GATAAAGAACTGCTTTTTTG+TGG + Chr1:15549233-15549252 None:intergenic 30.0%
!!! GTTCTTTATCGCAGTTTTTT+TGG - Chr1:15549243-15549262 MsG0180001068.01.T01:intron 30.0%
!!! TCAAGAGTTATTTTTACCCT+TGG - Chr1:15545796-15545815 MsG0180001068.01.T01:intron 30.0%
!!! TTCATATGTGCTTTTTCACT+TGG - Chr1:15549116-15549135 MsG0180001068.01.T01:intron 30.0%
!!! TTTTTGGTGATGCTTCTATT+AGG - Chr1:15549259-15549278 MsG0180001068.01.T01:intron 30.0%
AAAAGACTATGCTCCTAAGT+TGG - Chr1:15547676-15547695 MsG0180001068.01.T01:intron 35.0%
AAACCTCCAAAAAAGAAGAC+AGG + Chr1:15547965-15547984 None:intergenic 35.0%
AAAGACGTGCACTACTAAAA+GGG + Chr1:15545137-15545156 None:intergenic 35.0%
AACCTCCAAAAAAGAAGACA+GGG + Chr1:15547964-15547983 None:intergenic 35.0%
AATCAGTAGAAGCAAATGCA+AGG + Chr1:15548887-15548906 None:intergenic 35.0%
AATCTTCTACTTATAGGTGG+TGG - Chr1:15544013-15544032 MsG0180001068.01.T01:intron 35.0%
AATTCTAGGCCTTCCAAATA+AGG + Chr1:15549361-15549380 None:intergenic 35.0%
ACATGAATTCCCTTTAATGC+AGG - Chr1:15546331-15546350 MsG0180001068.01.T01:intron 35.0%
ACCAATCTTCTACTTATAGG+TGG - Chr1:15544010-15544029 MsG0180001068.01.T01:intron 35.0%
ACCACCTATAAGTAGAAGAT+TGG + Chr1:15544014-15544033 None:intergenic 35.0%
ACCATAAAAGAAAACCAGAG+GGG + Chr1:15546988-15547007 None:intergenic 35.0%
AGATAATAACCGAACCTCAT+AGG + Chr1:15543549-15543568 None:intergenic 35.0%
AGCATCCGTTGAAGAAAAAA+AGG + Chr1:15548944-15548963 None:intergenic 35.0%
ATAAATCAAGAAACAGCGAG+AGG + Chr1:15543308-15543327 None:intergenic 35.0%
ATCACTTGATCCAGTAATTG+GGG - Chr1:15546767-15546786 MsG0180001068.01.T01:intron 35.0%
ATCAGTAGAAGCAAATGCAA+GGG + Chr1:15548886-15548905 None:intergenic 35.0%
ATGATAGCAAGTACTCTATG+TGG + Chr1:15547517-15547536 None:intergenic 35.0%
ATGATTGGATGCTTATGAGT+GGG + Chr1:15545415-15545434 None:intergenic 35.0%
ATTCAGATACCTAGTAGTTG+TGG + Chr1:15544512-15544531 None:intergenic 35.0%
ATTCCAAATGTGTGAAAGTG+GGG - Chr1:15544483-15544502 MsG0180001068.01.T01:intron 35.0%
CTCATCTATAAGAGTTGTTG+AGG - Chr1:15546887-15546906 MsG0180001068.01.T01:intron 35.0%
CTGTATTACTGCAACAAAAG+TGG - Chr1:15546928-15546947 MsG0180001068.01.T01:intron 35.0%
CTTGTGCTTGAGAATAAAGT+AGG - Chr1:15549483-15549502 MsG0180001068.01.T01:CDS 35.0%
GAAAAACACGAAGTTATGAC+TGG - Chr1:15543417-15543436 MsG0180001068.01.T01:three_prime_UTR 35.0%
GAAATAGTATCTGAACCACT+TGG - Chr1:15546389-15546408 MsG0180001068.01.T01:intron 35.0%
GATACTATTTCAGCTGAAGA+AGG + Chr1:15546380-15546399 None:intergenic 35.0%
GATTCATATTCCTTCCTGTT+GGG - Chr1:15544316-15544335 MsG0180001068.01.T01:intron 35.0%
GTGTACATGTATGATGTATC+TGG + Chr1:15547475-15547494 None:intergenic 35.0%
TATATGCTATTAGTGTGTGG+TGG - Chr1:15545570-15545589 MsG0180001068.01.T01:CDS 35.0%
TATCACATGTACTCAGATGA+AGG - Chr1:15543627-15543646 MsG0180001068.01.T01:CDS 35.0%
TATGATTGGATGCTTATGAG+TGG + Chr1:15545416-15545435 None:intergenic 35.0%
TCATCTGGAAAGGAAAATGT+AGG + Chr1:15545597-15545616 None:intergenic 35.0%
TCGTAGAAATGGAGGATAAA+TGG + Chr1:15543260-15543279 None:intergenic 35.0%
TGATTTCCTGACTATTGCTT+AGG - Chr1:15546078-15546097 MsG0180001068.01.T01:CDS 35.0%
TGCTATCATTCTAGATACCT+TGG - Chr1:15547528-15547547 MsG0180001068.01.T01:intron 35.0%
TGGTATATGCTATTAGTGTG+TGG - Chr1:15545567-15545586 MsG0180001068.01.T01:CDS 35.0%
TGTGTTTGAAGAGAAAGAAG+AGG + Chr1:15543226-15543245 None:intergenic 35.0%
TTAATTCGTACCGTGATGAT+GGG + Chr1:15548141-15548160 None:intergenic 35.0%
TTAGTAGTAGTGTATGACGT+TGG + Chr1:15543195-15543214 None:intergenic 35.0%
TTATTCTCAAGCACAAGTCA+TGG + Chr1:15549480-15549499 None:intergenic 35.0%
TTCTACTGTTGGGATATGAT+TGG + Chr1:15545430-15545449 None:intergenic 35.0%
TTGGATGATGACAAAGTTTC+TGG - Chr1:15547892-15547911 MsG0180001068.01.T01:intron 35.0%
TTTGTTTCCTTTCTCGAAAC+AGG - Chr1:15548407-15548426 MsG0180001068.01.T01:intron 35.0%
! ACATTCACTCAGATTTTCCT+AGG + Chr1:15543873-15543892 None:intergenic 35.0%
! ACTATTGCTTAGGTTGTTGA+AGG - Chr1:15546088-15546107 MsG0180001068.01.T01:CDS 35.0%
! ATCTTTGTATTGGTGTATGG+TGG + Chr1:15549288-15549307 None:intergenic 35.0%
! ATTCATACTTTGCCTTTTGG+AGG - Chr1:15549150-15549169 MsG0180001068.01.T01:intron 35.0%
! CTATTGCTTAGGTTGTTGAA+GGG - Chr1:15546089-15546108 MsG0180001068.01.T01:CDS 35.0%
! CTCATCTTTGTATTGGTGTA+TGG + Chr1:15549291-15549310 None:intergenic 35.0%
! GCAATTCATACTTTGCCTTT+TGG - Chr1:15549147-15549166 MsG0180001068.01.T01:intron 35.0%
! GCTATAATTCGTGCCTTATT+TGG - Chr1:15549345-15549364 MsG0180001068.01.T01:intron 35.0%
! GGGTCTTCAATCTGAAATAT+CGG + Chr1:15548995-15549014 None:intergenic 35.0%
! TATGGGTCCAGATTTTATTG+GGG - Chr1:15543766-15543785 MsG0180001068.01.T01:intron 35.0%
! TCACACATTTGGAATATCAG+TGG + Chr1:15544478-15544497 None:intergenic 35.0%
! TGGGACAAAATTTTCTACAC+AGG - Chr1:15546948-15546967 MsG0180001068.01.T01:intron 35.0%
! TGTTGTTATTGTTGTGTGAC+TGG - Chr1:15545998-15546017 MsG0180001068.01.T01:CDS 35.0%
!! AATTGATGAGAGTGCTTGAT+TGG - Chr1:15543804-15543823 MsG0180001068.01.T01:intron 35.0%
!! ATTGATGAGAGTGCTTGATT+GGG - Chr1:15543805-15543824 MsG0180001068.01.T01:intron 35.0%
!! CACCAAATCAGCTTTTAAGT+TGG - Chr1:15548679-15548698 MsG0180001068.01.T01:intron 35.0%
!! CTAGAAGTAGCTTTAAAACC+AGG + Chr1:15548717-15548736 None:intergenic 35.0%
!! GTTTCTGGTAAGATTGTTCA+TGG - Chr1:15547907-15547926 MsG0180001068.01.T01:intron 35.0%
!! TAATTCGTGCCTTATTTGGA+AGG - Chr1:15549349-15549368 MsG0180001068.01.T01:intron 35.0%
!! TTTGTTAAGACTGTTTCTGC+TGG - Chr1:15548525-15548544 MsG0180001068.01.T01:intron 35.0%
!!! AGTGGCCTTTTTTTCTTCAA+CGG - Chr1:15548936-15548955 MsG0180001068.01.T01:intron 35.0%
!!! AGTGTGGGTTTTTTATGGTT+TGG - Chr1:15543948-15543967 MsG0180001068.01.T01:intron 35.0%
!!! AGTTATTTTTACCCTTGGAC+AGG - Chr1:15545801-15545820 MsG0180001068.01.T01:intron 35.0%
!!! AGTTTTGAAAGTGAGGGATT+TGG - Chr1:15549730-15549749 MsG0180001068.01.T01:five_prime_UTR 35.0%
!!! GAGTTGAGTTTTGAAAGTGA+GGG - Chr1:15549724-15549743 MsG0180001068.01.T01:five_prime_UTR 35.0%
!!! GATGTTTTGACCTGCATTAA+AGG + Chr1:15546344-15546363 None:intergenic 35.0%
!!! GTTTTGAAAGTGAGGGATTT+GGG - Chr1:15549731-15549750 MsG0180001068.01.T01:five_prime_UTR 35.0%
!!! TTTTTTAGGCAATGGAAGAG+TGG - Chr1:15547241-15547260 MsG0180001068.01.T01:intron 35.0%
AACAACCAATTCACACTTGC+TGG + Chr1:15545755-15545774 None:intergenic 40.0%
AACAGCCTCTTGTGTAAAAC+AGG - Chr1:15545031-15545050 MsG0180001068.01.T01:CDS 40.0%
AAGGATAATCGCTGGAAAGT+GGG - Chr1:15547604-15547623 MsG0180001068.01.T01:intron 40.0%
ACACAATGTTGGATCGTCAA+TGG + Chr1:15544675-15544694 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - Chr1:15545032-15545051 MsG0180001068.01.T01:CDS 40.0%
ACTGGATCAAGTGATAACAC+TGG + Chr1:15546762-15546781 None:intergenic 40.0%
AGATTGATGAAGGCTCTCAT+GGG - Chr1:15549309-15549328 MsG0180001068.01.T01:intron 40.0%
AGCATCTTAAGTGTCTCAAG+TGG + Chr1:15544630-15544649 None:intergenic 40.0%
AGCTTGGAGGGAAGAAAAAA+GGG + Chr1:15546488-15546507 None:intergenic 40.0%
AGGCCTAGAATTCTTTGTCT+TGG - Chr1:15549369-15549388 MsG0180001068.01.T01:CDS 40.0%
AGTCAATTCATTCAGACGGT+TGG - Chr1:15544293-15544312 MsG0180001068.01.T01:intron 40.0%
AGTCTGAGTTGTGTAGTTAG+TGG - Chr1:15546029-15546048 MsG0180001068.01.T01:CDS 40.0%
ATACTCCAGCAAGTGTGAAT+TGG - Chr1:15545747-15545766 MsG0180001068.01.T01:intron 40.0%
ATATATGCAGCAAGAGGCTT+CGG + Chr1:15548474-15548493 None:intergenic 40.0%
ATCAAAGATCTCCTAACCAG+TGG + Chr1:15545692-15545711 None:intergenic 40.0%
ATGATCAACACAACTCCAAG+TGG + Chr1:15546407-15546426 None:intergenic 40.0%
ATTCCCCACTTTCACACATT+TGG + Chr1:15544489-15544508 None:intergenic 40.0%
ATTGATGCAACTGTCGTGTT+GGG + Chr1:15549015-15549034 None:intergenic 40.0%
CAAAACTCAACTCGCAAACA+AGG + Chr1:15549717-15549736 None:intergenic 40.0%
CAACAACCTAAGCAATAGTC+AGG + Chr1:15546087-15546106 None:intergenic 40.0%
CACTCAAGGAATTGAAGCAT+TGG - Chr1:15546216-15546235 MsG0180001068.01.T01:intron 40.0%
CACTTAAGATGCTAGGTCTT+AGG - Chr1:15544637-15544656 MsG0180001068.01.T01:intron 40.0%
CACTTTAGATGTTCGGTCAT+AGG - Chr1:15544717-15544736 MsG0180001068.01.T01:intron 40.0%
CATATCTAAGTCAAGACCAC+CGG - Chr1:15543129-15543148 MsG0180001068.01.T01:three_prime_UTR 40.0%
CATCATCACGGTACGAATTA+AGG - Chr1:15548140-15548159 MsG0180001068.01.T01:intron 40.0%
CGTACAATACACCAAATGGT+GGG - Chr1:15545063-15545082 MsG0180001068.01.T01:CDS 40.0%
CTCATGTAAAACTGCACTCA+AGG - Chr1:15546202-15546221 MsG0180001068.01.T01:intron 40.0%
CTCATTATCAGAGAATCACG+CGG + Chr1:15548093-15548112 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - Chr1:15545037-15545056 MsG0180001068.01.T01:CDS 40.0%
CTTAATTCGTACCGTGATGA+TGG + Chr1:15548142-15548161 None:intergenic 40.0%
CTTGAGACACTTAAGATGCT+AGG - Chr1:15544630-15544649 MsG0180001068.01.T01:intron 40.0%
GAAAGACGTGCACTACTAAA+AGG + Chr1:15545138-15545157 None:intergenic 40.0%
GACATAGTATCTGAACCACT+TGG - Chr1:15546295-15546314 MsG0180001068.01.T01:intron 40.0%
GATTGTTCATGGAGGTGAAA+AGG - Chr1:15547918-15547937 MsG0180001068.01.T01:intron 40.0%
GCATGACCACTAACATCAAT+TGG + Chr1:15549530-15549549 None:intergenic 40.0%
GCATTTATGCATGTGGAATG+TGG - Chr1:15544346-15544365 MsG0180001068.01.T01:CDS 40.0%
GGACATCCAATAGAACAGTA+GGG + Chr1:15548071-15548090 None:intergenic 40.0%
GGATTCATATTCCTTCCTGT+TGG - Chr1:15544315-15544334 MsG0180001068.01.T01:intron 40.0%
GGGACCAATCTTCTACTTAT+AGG - Chr1:15544007-15544026 MsG0180001068.01.T01:intron 40.0%
GGTGTAATTGCATTGCAGAT+TGG - Chr1:15546167-15546186 MsG0180001068.01.T01:intron 40.0%
GTACAATTAGAGCAAGCTAG+CGG - Chr1:15549638-15549657 MsG0180001068.01.T01:five_prime_UTR 40.0%
GTCAATTCATTCAGACGGTT+GGG - Chr1:15544294-15544313 MsG0180001068.01.T01:intron 40.0%
GTGCTTCTAATCATCTGGAA+AGG + Chr1:15545607-15545626 None:intergenic 40.0%
GTTATGTTGTGATGTGGGTA+GGG + Chr1:15543173-15543192 None:intergenic 40.0%
GTTCTGTTCTGTTGAATCCT+AGG - Chr1:15543853-15543872 MsG0180001068.01.T01:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - Chr1:15544988-15545007 MsG0180001068.01.T01:CDS 40.0%
GTTTATAGTAGTGCACGTGA+GGG - Chr1:15544943-15544962 MsG0180001068.01.T01:intron 40.0%
TACAAACGACAAGAAGCTCA+AGG - Chr1:15548497-15548516 MsG0180001068.01.T01:intron 40.0%
TAGAGAATCCACCTAGGAAT+AGG + Chr1:15547773-15547792 None:intergenic 40.0%
TAGCTTGGAGGGAAGAAAAA+AGG + Chr1:15546489-15546508 None:intergenic 40.0%
TCATTATCAGAGAATCACGC+GGG + Chr1:15548092-15548111 None:intergenic 40.0%
TCCATTACTTCCCATCATCA+CGG - Chr1:15548128-15548147 MsG0180001068.01.T01:intron 40.0%
TCTGGTAAGATTGTTCATGG+AGG - Chr1:15547910-15547929 MsG0180001068.01.T01:intron 40.0%
TGCAAAAAATCCCAACAGGA+AGG + Chr1:15544329-15544348 None:intergenic 40.0%
TGCACGGAATAGACTCTATT+TGG + Chr1:15545314-15545333 None:intergenic 40.0%
TGCTTGTGCTTCTAATCATC+TGG + Chr1:15545612-15545631 None:intergenic 40.0%
TGTTATTGTTGTGTGACTGG+AGG - Chr1:15546001-15546020 MsG0180001068.01.T01:CDS 40.0%
TGTTTATAGTAGTGCACGTG+AGG - Chr1:15544942-15544961 MsG0180001068.01.T01:intron 40.0%
TTAAGTCTTAGTGAGGTCCA+AGG + Chr1:15547548-15547567 None:intergenic 40.0%
TTATCGACCTGTTTCGAGAA+AGG + Chr1:15548417-15548436 None:intergenic 40.0%
! AAGACGACTTCAAGTTTGCT+TGG - Chr1:15547162-15547181 MsG0180001068.01.T01:intron 40.0%
! ACAGGTTGAGTTCGTAGAAA+TGG + Chr1:15543271-15543290 None:intergenic 40.0%
! ACGTTGGTTATGTTGTGATG+TGG + Chr1:15543179-15543198 None:intergenic 40.0%
! AGTCTTTAGAGAATCCACCT+AGG + Chr1:15547779-15547798 None:intergenic 40.0%
! ATGGGTCCAGATTTTATTGG+GGG - Chr1:15543767-15543786 MsG0180001068.01.T01:intron 40.0%
! ATTGACATCACTAGCTTGGA+GGG + Chr1:15546500-15546519 None:intergenic 40.0%
! CACTGAAAACGTACCTTTTC+CGG + Chr1:15546248-15546267 None:intergenic 40.0%
! CGATCGCTTGATAAAGCTTT+TGG - Chr1:15547873-15547892 MsG0180001068.01.T01:intron 40.0%
! CGTTGGTTATGTTGTGATGT+GGG + Chr1:15543178-15543197 None:intergenic 40.0%
! CTGAGAGAAACATTTGGTTC+TGG - Chr1:15543395-15543414 MsG0180001068.01.T01:three_prime_UTR 40.0%
! CTTACCCTGTTTTACACAAG+AGG + Chr1:15545039-15545058 None:intergenic 40.0%
! CTTTGATCACAGAGTGTTCA+GGG - Chr1:15547128-15547147 MsG0180001068.01.T01:intron 40.0%
! GATTAGCCCTACTGTTCTAT+TGG - Chr1:15548062-15548081 MsG0180001068.01.T01:intron 40.0%
! GTACGTGTATCTTGTCACTT+TGG - Chr1:15547448-15547467 MsG0180001068.01.T01:intron 40.0%
! TTGTGTTGATCATCTCTGCA+TGG - Chr1:15546414-15546433 MsG0180001068.01.T01:intron 40.0%
!! CAAGGAATTGAAGCATTGGA+TGG - Chr1:15546220-15546239 MsG0180001068.01.T01:intron 40.0%
!!! AAGCTCCCTGTCTTCTTTTT+TGG - Chr1:15547956-15547975 MsG0180001068.01.T01:intron 40.0%
!!! CGAGTTGAGTTTTGAAAGTG+AGG - Chr1:15549723-15549742 MsG0180001068.01.T01:five_prime_UTR 40.0%
!!! GTTGCAGTGTGGGTTTTTTA+TGG - Chr1:15543943-15543962 MsG0180001068.01.T01:intron 40.0%
!!! TAGTGCGTCATAGTTTTGAC+TGG - Chr1:15549076-15549095 MsG0180001068.01.T01:intron 40.0%
!!! TCCCCTCTGGTTTTCTTTTA+TGG - Chr1:15546984-15547003 MsG0180001068.01.T01:intron 40.0%
AAACTGTCGCCTATGAGGTT+CGG - Chr1:15543537-15543556 MsG0180001068.01.T01:CDS 45.0%
AAGAGTGGCACGCATTGTTA+TGG - Chr1:15547256-15547275 MsG0180001068.01.T01:intron 45.0%
AATTAGAGCAAGCTAGCGGA+GGG - Chr1:15549642-15549661 MsG0180001068.01.T01:five_prime_UTR 45.0%
AATTGAATGCACAGGACCAC+TGG + Chr1:15545724-15545743 None:intergenic 45.0%
ACCGTTCAATCTTGACCAAG+TGG - Chr1:15544452-15544471 MsG0180001068.01.T01:CDS 45.0%
AGAATCCACCTAGGAATAGG+AGG + Chr1:15547770-15547789 None:intergenic 45.0%
AGATGAGAATGAGATGCCAC+TGG - Chr1:15545673-15545692 MsG0180001068.01.T01:intron 45.0%
AGGATAATCGCTGGAAAGTG+GGG - Chr1:15547605-15547624 MsG0180001068.01.T01:intron 45.0%
AGTGTTAAGGTCCTGTCCAA+GGG + Chr1:15545815-15545834 None:intergenic 45.0%
ATAGGCGACAGTTTCAAGAG+GGG + Chr1:15543531-15543550 None:intergenic 45.0%
ATTGCAAGGTGGCAACTAGA+AGG - Chr1:15547585-15547604 MsG0180001068.01.T01:intron 45.0%
ATTGGATGCTTATGAGTGGG+TGG + Chr1:15545412-15545431 None:intergenic 45.0%
CAACTTTACCAATTGCGCCA+AGG + Chr1:15544972-15544991 None:intergenic 45.0%
CAGTTATAGCAGCTCTATCG+CGG + Chr1:15546665-15546684 None:intergenic 45.0%
CATAGGCGACAGTTTCAAGA+GGG + Chr1:15543532-15543551 None:intergenic 45.0%
GAAGGATAATCGCTGGAAAG+TGG - Chr1:15547603-15547622 MsG0180001068.01.T01:intron 45.0%
GAGATTGATGAAGGCTCTCA+TGG - Chr1:15549308-15549327 MsG0180001068.01.T01:intron 45.0%
GATTGATGCAACTGTCGTGT+TGG + Chr1:15549016-15549035 None:intergenic 45.0%
GCAACTAGAAGGATAATCGC+TGG - Chr1:15547596-15547615 MsG0180001068.01.T01:intron 45.0%
GCAGTGACCTCGTACTTAAT+GGG - Chr1:15545511-15545530 MsG0180001068.01.T01:intron 45.0%
GCCACTTGGTCAAGATTGAA+CGG + Chr1:15544456-15544475 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - Chr1:15545062-15545081 MsG0180001068.01.T01:CDS 45.0%
GCTGCGTACAATACACCAAA+TGG - Chr1:15545059-15545078 MsG0180001068.01.T01:CDS 45.0%
GCTTTATCAAGCGATCGAAG+TGG + Chr1:15547870-15547889 None:intergenic 45.0%
GGGACATCCAATAGAACAGT+AGG + Chr1:15548072-15548091 None:intergenic 45.0%
GGTTATGTTGTGATGTGGGT+AGG + Chr1:15543174-15543193 None:intergenic 45.0%
GGTTGAGTTCGTAGAAATGG+AGG + Chr1:15543268-15543287 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG - Chr1:15544994-15545013 MsG0180001068.01.T01:CDS 45.0%
GTGATCAACACAACTCCAAG+TGG + Chr1:15546313-15546332 None:intergenic 45.0%
GTGGCTGGAGAAATTTCTGA+TGG + Chr1:15546825-15546844 None:intergenic 45.0%
TCATAGGCGACAGTTTCAAG+AGG + Chr1:15543533-15543552 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG - Chr1:15544995-15545014 MsG0180001068.01.T01:CDS 45.0%
TCGTTGCTGGCAAAACTGTT+AGG - Chr1:15546849-15546868 MsG0180001068.01.T01:intron 45.0%
TCTCAGTTCATTCACCAGCA+TGG + Chr1:15543381-15543400 None:intergenic 45.0%
TCTTGAAACTGTCGCCTATG+AGG - Chr1:15543532-15543551 MsG0180001068.01.T01:CDS 45.0%
TGCAGTGACCTCGTACTTAA+TGG - Chr1:15545510-15545529 MsG0180001068.01.T01:intron 45.0%
TGCGATTGACATCACTAGCT+TGG + Chr1:15546504-15546523 None:intergenic 45.0%
TGCTAGGTCTTAGGTGTTAG+AGG - Chr1:15544646-15544665 MsG0180001068.01.T01:intron 45.0%
TTGGAATATCAGTGGCCACT+TGG + Chr1:15544470-15544489 None:intergenic 45.0%
! AGAATGAGATGCCACTGGTT+AGG - Chr1:15545678-15545697 MsG0180001068.01.T01:intron 45.0%
! AGTTGGTTCTCAGCAATTCC+TGG - Chr1:15548696-15548715 MsG0180001068.01.T01:intron 45.0%
! GATTGACATCACTAGCTTGG+AGG + Chr1:15546501-15546520 None:intergenic 45.0%
! GCTTAGGTTGTTGAAGGGTT+TGG - Chr1:15546094-15546113 MsG0180001068.01.T01:CDS 45.0%
! GCTTTGATCACAGAGTGTTC+AGG - Chr1:15547127-15547146 MsG0180001068.01.T01:intron 45.0%
! GTTTGGTTCCTCCTATTCCT+AGG - Chr1:15547759-15547778 MsG0180001068.01.T01:intron 45.0%
! TATTGCAGCTGGTAATGCTG+TGG - Chr1:15546791-15546810 MsG0180001068.01.T01:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + Chr1:15545028-15545047 None:intergenic 45.0%
! TTCTCTTTGTTTCTCCCCTC+TGG - Chr1:15546971-15546990 MsG0180001068.01.T01:intron 45.0%
! TTTCTGGTGCGTGTACTGTT+CGG - Chr1:15543910-15543929 MsG0180001068.01.T01:intron 45.0%
! TTTTGCCAGCAACGATGATG+TGG + Chr1:15546844-15546863 None:intergenic 45.0%
!! ACCGTGATGATGGGAAGTAA+TGG + Chr1:15548132-15548151 None:intergenic 45.0%
!! ACTTTGCCTTTTGGAGGAGT+AGG - Chr1:15549156-15549175 MsG0180001068.01.T01:intron 45.0%
!! ATTGAAGCATTGGATGGCTC+CGG - Chr1:15546226-15546245 MsG0180001068.01.T01:intron 45.0%
!! CTTTGATGATGTGCAACCAG+TGG - Chr1:15545705-15545724 MsG0180001068.01.T01:intron 45.0%
!! GTTAAGACTGTTTCTGCTGG+TGG - Chr1:15548528-15548547 MsG0180001068.01.T01:intron 45.0%
!!! CTCCCTGTCTTCTTTTTTGG+AGG - Chr1:15547959-15547978 MsG0180001068.01.T01:intron 45.0%
!!! TTTATTTTTTTTAATTTTTC+TGG - Chr1:15543894-15543913 MsG0180001068.01.T01:intron 5.0%
AACAGTAGGGCTAATCCTCC+TGG + Chr1:15548058-15548077 None:intergenic 50.0%
ACCAGAGCCCATTAAGTACG+AGG + Chr1:15545521-15545540 None:intergenic 50.0%
ATGTTGTGATGTGGGTAGGG+TGG + Chr1:15543170-15543189 None:intergenic 50.0%
CAATTAGAGCAAGCTAGCGG+AGG - Chr1:15549641-15549660 MsG0180001068.01.T01:five_prime_UTR 50.0%
CTCTCACCTACTCCTCCAAA+AGG + Chr1:15549165-15549184 None:intergenic 50.0%
GAGTGTTAAGGTCCTGTCCA+AGG + Chr1:15545816-15545835 None:intergenic 50.0%
GCACTACTAAAAGGGCAACC+CGG + Chr1:15545129-15545148 None:intergenic 50.0%
GCTGCAATAGCCCCAATTAC+TGG + Chr1:15546780-15546799 None:intergenic 50.0%
GGAAAGTGGGGTTGCAACAA+TGG - Chr1:15547617-15547636 MsG0180001068.01.T01:intron 50.0%
GTAATTGGGGCTATTGCAGC+TGG - Chr1:15546780-15546799 MsG0180001068.01.T01:intron 50.0%
GTGGGGAATCCACAACTACT+AGG - Chr1:15544500-15544519 MsG0180001068.01.T01:intron 50.0%
TAGGCGACAGTTTCAAGAGG+GGG + Chr1:15543530-15543549 None:intergenic 50.0%
TATTGAAGCGGGATCCATGC+TGG - Chr1:15543364-15543383 MsG0180001068.01.T01:three_prime_UTR 50.0%
TGGTGGAAACGTTGCAGTGT+GGG - Chr1:15543933-15543952 MsG0180001068.01.T01:intron 50.0%
TGGTTCCTCCTATTCCTAGG+TGG - Chr1:15547762-15547781 MsG0180001068.01.T01:intron 50.0%
TGTTCGGTCATAGGTCTGAG+AGG - Chr1:15544726-15544745 MsG0180001068.01.T01:intron 50.0%
TGTTGTGATGTGGGTAGGGT+GGG + Chr1:15543169-15543188 None:intergenic 50.0%
TTGATGAAGGCTCTCATGGG+TGG - Chr1:15549312-15549331 MsG0180001068.01.T01:intron 50.0%
TTTGGAGGAGTAGGTGAGAG+TGG - Chr1:15549165-15549184 MsG0180001068.01.T01:intron 50.0%
!! ACCTCGTACTTAATGGGCTC+TGG - Chr1:15545517-15545536 MsG0180001068.01.T01:intron 50.0%
!! GACTGTTTCTGCTGGTGGTT+TGG - Chr1:15548533-15548552 MsG0180001068.01.T01:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG - Chr1:15545007-15545026 MsG0180001068.01.T01:CDS 55.0%
ACACCAGTTGTGCTGGAGCT+TGG - Chr1:15547299-15547318 MsG0180001068.01.T01:intron 55.0%
ACTAGAGCTCCCGCATATGC+AGG + Chr1:15545103-15545122 None:intergenic 55.0%
AGGAGTAGGTGAGAGTGGAG+TGG - Chr1:15549170-15549189 MsG0180001068.01.T01:intron 55.0%
AGTGCACGTGAGGGTAACCT+TGG - Chr1:15544952-15544971 MsG0180001068.01.T01:intron 55.0%
AGTGGAGTGGGTGCATACCA+TGG - Chr1:15549183-15549202 MsG0180001068.01.T01:intron 55.0%
ATGAAGGCTCTCATGGGTGG+TGG - Chr1:15549315-15549334 MsG0180001068.01.T01:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + Chr1:15545102-15545121 None:intergenic 55.0%
GAGGGTAACCTTGGCGCAAT+TGG - Chr1:15544961-15544980 MsG0180001068.01.T01:CDS 55.0%
GCACCTTACACCAGTTGTGC+TGG - Chr1:15547292-15547311 MsG0180001068.01.T01:intron 55.0%
GCATTGGATGGCTCCGGAAA+AGG - Chr1:15546232-15546251 MsG0180001068.01.T01:intron 55.0%
GCTCCAGCACAACTGGTGTA+AGG + Chr1:15547298-15547317 None:intergenic 55.0%
GGAGTAGGTGAGAGTGGAGT+GGG - Chr1:15549171-15549190 MsG0180001068.01.T01:intron 55.0%
TCCAGCCACATCATCGTTGC+TGG - Chr1:15546836-15546855 MsG0180001068.01.T01:intron 55.0%
! GTGGTGGAAACGTTGCAGTG+TGG - Chr1:15543932-15543951 MsG0180001068.01.T01:intron 55.0%
AGCGGCTATAGCAGCGCTCT+AGG + Chr1:15546575-15546594 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG + Chr1:15545090-15545109 None:intergenic 60.0%
CCAGTTGTGCTGGAGCTTGG+AGG - Chr1:15547302-15547321 MsG0180001068.01.T01:intron 60.0%
CCTCCAAGCTCCAGCACAAC+TGG + Chr1:15547305-15547324 None:intergenic 60.0%
CTGGTGCGTGTACTGTTCGG+TGG - Chr1:15543913-15543932 MsG0180001068.01.T01:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG - Chr1:15545090-15545109 MsG0180001068.01.T01:CDS 60.0%
GCATATGCAGGGTCCGGGAA+GGG + Chr1:15545091-15545110 None:intergenic 60.0%
GCCAGCAACGATGATGTGGC+TGG + Chr1:15546840-15546859 None:intergenic 60.0%
GTGGGTAGGGTGGGTGATGA+GGG + Chr1:15543160-15543179 None:intergenic 60.0%
GTGGGTGATGAGGGTGGTAC+CGG + Chr1:15543151-15543170 None:intergenic 60.0%
TGTGGGTAGGGTGGGTGATG+AGG + Chr1:15543161-15543180 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - Chr1:15545091-15545110 MsG0180001068.01.T01:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr1:15545075-15545094 MsG0180001068.01.T01:CDS 60.0%
! GTGCGTGTACTGTTCGGTGG+TGG - Chr1:15543916-15543935 MsG0180001068.01.T01:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + Chr1:15545092-15545111 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr1:15545077-15545096 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + Chr1:15545096-15545115 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + Chr1:15545097-15545116 None:intergenic 65.0%
GGTAGGGTGGGTGATGAGGG+TGG + Chr1:15543157-15543176 None:intergenic 65.0%
! ATGCGGGAGCTCTAGTGCGC+CGG - Chr1:15545107-15545126 MsG0180001068.01.T01:CDS 65.0%
! GGTGATGAGGGTGGTACCGG+TGG + Chr1:15543148-15543167 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCGCC+GGG - Chr1:15545108-15545127 MsG0180001068.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 15543111 15549802 15543111 ID=MsG0180001068.01;Name=MsG0180001068.01
Chr1 mRNA 15543111 15549802 15543111 ID=MsG0180001068.01.T01;Parent=MsG0180001068.01;Name=MsG0180001068.01.T01;_AED=0.40;_eAED=0.40;_QI=218|1|1|1|1|1|10|335|518
Chr1 exon 15543111 15543769 15543111 ID=MsG0180001068.01.T01:exon:31089;Parent=MsG0180001068.01.T01
Chr1 exon 15544335 15544484 15544335 ID=MsG0180001068.01.T01:exon:31088;Parent=MsG0180001068.01.T01
Chr1 exon 15544764 15544854 15544764 ID=MsG0180001068.01.T01:exon:31087;Parent=MsG0180001068.01.T01
Chr1 exon 15544960 15545132 15544960 ID=MsG0180001068.01.T01:exon:31086;Parent=MsG0180001068.01.T01
Chr1 exon 15545216 15545320 15545216 ID=MsG0180001068.01.T01:exon:31085;Parent=MsG0180001068.01.T01
Chr1 exon 15545549 15545664 15545549 ID=MsG0180001068.01.T01:exon:31084;Parent=MsG0180001068.01.T01
Chr1 exon 15545944 15546150 15545944 ID=MsG0180001068.01.T01:exon:31083;Parent=MsG0180001068.01.T01
Chr1 exon 15546464 15546560 15546464 ID=MsG0180001068.01.T01:exon:31082;Parent=MsG0180001068.01.T01
Chr1 exon 15546660 15546728 15546660 ID=MsG0180001068.01.T01:exon:31081;Parent=MsG0180001068.01.T01
Chr1 exon 15549360 15549802 15549360 ID=MsG0180001068.01.T01:exon:31080;Parent=MsG0180001068.01.T01
Chr1 five_prime_UTR 15549585 15549802 15549585 ID=MsG0180001068.01.T01:five_prime_utr;Parent=MsG0180001068.01.T01
Chr1 CDS 15549360 15549584 15549360 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15546660 15546728 15546660 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15546464 15546560 15546464 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15545944 15546150 15545944 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15545549 15545664 15545549 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15545216 15545320 15545216 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15544960 15545132 15544960 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15544764 15544854 15544764 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15544335 15544484 15544335 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 CDS 15543446 15543769 15543446 ID=MsG0180001068.01.T01:cds;Parent=MsG0180001068.01.T01
Chr1 three_prime_UTR 15543111 15543445 15543111 ID=MsG0180001068.01.T01:three_prime_utr;Parent=MsG0180001068.01.T01
Gene Sequence

>MsG0180001068.01.T01

ATGACGAATGAATTGGAGAGAAAGAATATGTTTGATATTGAAGCGGGATCCATGCTGGTGAATGAACTGAGAGAAACATTTGGTTCTGGAAAAACACGAAGTTATGACTGGAAAGTGTCGCAGTTGAACCAGCTTTTTAAGCTTTTAAACTTTCATGAAGAAGAAATCATTGATGCTCTTCGTAATGATATCGATAAACCCCCTCTTGAAACTGTCGCCTATGAGATTGGTATGTTGAAAAACTCATGTAAAACTGCACTCAAGGAATTGAAGCATTGGATGGCTCCGGAAAAGGTCAAAACATCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTTGGAGTTGTGTTGATCATCTCTGCATGGAACTATCCATTTTTGTTATCACTTGATCCAGTAATTGGGGCTATTGCAGCTGGTAATGCTGTGGTCTTAAAACCATCAGAAATTTCTCCAGCCACATCATCGTTGCTGGCAAAACTGTTAGGAGAATACATGGATAACTCATCTATAAGAGTTGTTGAGGGTGCAGTTGATGAAACATCTGTATTACTGCAACAAAAGTGGGACAAAATTTTCTACACAGGCAATGGAAGAGTGGCACGCATTGTTATGGCTGCTGCTGCTAAGCACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCACCAGTTGTTGTTGATTCAAATATCAACTTACAGGTGGCAACTAGAAGGATAATCGCTGGAAAGTGGGGTTGCAACAATGGACAAGCTTGCATTTCTCCAGATTATATCATAACAACAAAAGACTATGCTCCTAAGTTGGTGGATTCTCTAAAGACTGAATTAGAGCAATTTTATGGAAAGAATCAATTGGAATCAAAAGATTTGTCACGTATTGTAAACTCAAACCACTTCGATCGCTTGATAAAGCTTTTGGATGATGACAAAGTTTCTGGTAAGATTGTTCATGGAGGTGAAAAGGATAAAAGCAAATTGAGGATTAGCCCTACTGTTCTATTGGATGTCCCGCGTGATTCTCTGATAATGAGCGAAGAGATATTTGGTCCATTACTTCCCATCATCACGGTCGATAAACTAGATGAAAGCTTTGATGTGATAAATTCAGGACCGAAGCCTCTTGCTGCATATATATTTACAAACGACAAGAAGCTCAAGGAGCATTTTGTTAAGACTGTTTCTGCTGGTGGTTTGGTCATCAATGACACTACTTTACACCTTGCAATTCATACTTTGCCTTTTGGAGGAGTAGGTGAGAGTGGAGTGGGTGCATACCATGGAAAATTCTCATTTGATGCATTTAGCCACAAAAAAGCAGTTCTTTATCGCAGTTTTTTTGGTGATGCTTCTATTAGGTATCCACCATACACCAATACAAAGATGAGATTGATGAAGGCTCTCATGGGTGGTGGCTTACTTGCTATAATTCGTGCCTTATTTGGAAGGCCTAGAATTCTTTGTCTTGGAATCATGCATTTATTTTCATTTGGCAAGTATTTATTCAGGTTTCCTTGTATTTTATTGTCCAATTTTTTGGTTTGA
Protein sequence

>MsG0180001068.01.T01

MTNELERKNMFDIEAGSMLVNELRETFGSGKTRSYDWKVSQLNQLFKLLNFHEEEIIDALRNDIDKPPLETVAYEIGMLKNSCKTALKELKHWMAPEKVKTSITTFPSSAEIVSEPLGVVLIISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEISPATSSLLAKLLGEYMDNSSIRVVEGAVDETSVLLQQKWDKIFYTGNGRVARIVMAAAAKHLTPVVLELGGKSPVVVDSNINLQVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDSLKTELEQFYGKNQLESKDLSRIVNSNHFDRLIKLLDDDKVSGKIVHGGEKDKSKLRISPTVLLDVPRDSLIMSEEIFGPLLPIITVDKLDESFDVINSGPKPLAAYIFTNDKKLKEHFVKTVSAGGLVINDTTLHLAIHTLPFGGVGESGVGAYHGKFSFDAFSHKKAVLYRSFFGDASIRYPPYTNTKMRLMKALMGGGLLAIIRALFGRPRILCLGIMHLFSFGKYLFRFPCILLSNFLV*