AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004267.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004267.01.T01 MTR_1g093090 94.413 179 10 0 58 236 3 181 2.22e-90 264
MsG0180004267.01.T01 MTR_7g096220 42.675 157 87 2 75 231 36 189 8.31e-35 123
MsG0180004267.01.T01 MTR_1g070480 42.604 169 94 2 58 226 12 177 3.40e-29 108
MsG0180004267.01.T01 MTR_5g083490 38.125 160 94 2 59 218 37 191 3.63e-25 99.0
MsG0180004267.01.T01 MTR_4g014060 35.032 157 101 1 63 219 45 200 4.69e-24 96.3
MsG0180004267.01.T01 MTR_0562s0010 35.032 157 101 1 63 219 45 200 4.69e-24 96.3
MsG0180004267.01.T01 MTR_2g100260 33.974 156 99 3 61 216 20 171 6.12e-24 95.1
MsG0180004267.01.T01 MTR_6g092690 31.788 151 99 3 67 216 26 173 5.56e-19 82.0
MsG0180004267.01.T01 MTR_1g080760 46.667 90 45 2 80 169 37 123 3.96e-18 79.7
MsG0180004267.01.T01 MTR_8g016150 35.185 162 102 2 49 210 6 164 1.64e-17 77.8
MsG0180004267.01.T01 MTR_2g100270 35.260 173 107 3 49 219 5 174 2.15e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004267.01.T01 AT1G04260 40.116 172 100 2 60 231 3 171 5.22e-38 131
MsG0180004267.01.T01 AT1G08770 33.862 189 119 3 53 236 22 209 8.48e-27 103
MsG0180004267.01.T01 AT1G55190 37.037 162 99 2 55 216 14 172 1.03e-26 102
MsG0180004267.01.T01 AT2G38360 35.256 156 100 1 63 218 40 194 3.19e-26 102
MsG0180004267.01.T01 AT3G56110 37.255 153 95 1 74 226 41 192 1.65e-22 91.7
MsG0180004267.01.T01 AT3G56110 37.255 153 95 1 74 226 41 192 1.65e-22 91.7
MsG0180004267.01.T01 AT3G56110 37.255 153 95 1 74 226 41 192 1.65e-22 91.7
MsG0180004267.01.T01 AT3G56110 37.255 153 95 1 74 226 41 192 1.65e-22 91.7
MsG0180004267.01.T01 AT5G01640 32.353 170 114 1 49 218 26 194 2.62e-22 91.7
MsG0180004267.01.T01 AT2G40380 36.000 150 95 1 77 226 46 194 2.28e-21 89.0
MsG0180004267.01.T01 AT3G13710 29.775 178 116 3 54 231 13 181 2.31e-21 88.2
MsG0180004267.01.T01 AT3G13720 31.461 178 113 3 54 231 13 181 9.49e-21 86.7
MsG0180004267.01.T01 AT5G05380 31.336 217 127 3 23 218 15 230 2.08e-20 87.4
MsG0180004267.01.T01 AT5G05380 31.336 217 127 3 23 218 23 238 2.25e-20 87.4
MsG0180004267.01.T01 AT5G05380 31.336 217 127 3 23 218 39 254 3.49e-20 87.0
MsG0180004267.01.T01 AT5G05380 37.179 156 97 1 63 218 33 187 3.71e-20 85.9
MsG0180004267.01.T01 AT1G17700 34.641 153 96 3 72 223 31 180 1.44e-19 83.2
MsG0180004267.01.T01 AT5G07110 33.803 142 93 1 78 219 45 185 7.71e-14 68.6
MsG0180004267.01.T01 AT1G55640 31.655 139 92 2 72 210 33 168 1.07e-12 65.1
MsG0180004267.01.T01 AT4G29658 32.653 147 96 3 63 209 20 163 7.25e-12 62.8

Find 73 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGTGGTGGTGTCGGTTT+TGG 0.241307 1:+75768620 MsG0180004267.01.T01:CDS
CTTGGTCCCACTGGCCTCAT+TGG 0.307980 1:+75766980 MsG0180004267.01.T01:CDS
TAGTGTGGCTTCTTTGAAAT+TGG 0.308645 1:-75768250 None:intergenic
TCCAACGCGCGTGGTGGCTT+CGG 0.346241 1:-75768346 None:intergenic
AGTGTTTCTGACATTGTAAA+AGG 0.348091 1:-75768225 None:intergenic
GGGAGAGAGAGGAGAGGGAG+AGG 0.357722 1:-75768308 None:intergenic
TCCTCTCCACGCGCCACCCT+TGG 0.363758 1:+75768277 MsG0180004267.01.T01:CDS
CTCCTCCTTGTCGCTTTCGC+TGG 0.377058 1:+75768459 MsG0180004267.01.T01:CDS
GAGGACGGATGTTGGTGGTT+TGG 0.395824 1:+75768680 MsG0180004267.01.T01:CDS
TCCTTGTCGCTTTCGCTGGT+TGG 0.409335 1:+75768463 MsG0180004267.01.T01:CDS
AGAGGAGAGGGAGAGGAATT+CGG 0.428002 1:-75768301 None:intergenic
TGGTCACTCCTTGGTCCCAC+TGG 0.432310 1:+75766971 MsG0180004267.01.T01:CDS
TAATATCAAACAGGTGCATA+AGG 0.438615 1:-75768753 None:intergenic
GCGGGGATTGTTTGTTTGCA+TGG 0.445223 1:+75768648 MsG0180004267.01.T01:CDS
TCCACAAGTTGGTCACTCCT+TGG 0.447566 1:+75766962 MsG0180004267.01.T01:CDS
AGAGGATGGAAGGGAGAGAG+AGG 0.449283 1:-75768319 None:intergenic
TCGTGTTGTTGTTGTGGCGC+TGG 0.481756 1:+75768554 MsG0180004267.01.T01:CDS
CGACACCAATAATATCAAAC+AGG 0.486498 1:-75768762 None:intergenic
TGGAAGGGAGAGAGAGGAGA+GGG 0.487438 1:-75768313 None:intergenic
TCCAAGGGTGGCGCGTGGAG+AGG 0.505040 1:-75768278 None:intergenic
TGATGATCGTGTTGTTGTTG+TGG 0.510697 1:+75768548 MsG0180004267.01.T01:CDS
GGAGAACGATGGCGAGAGGA+TGG 0.514793 1:-75768440 None:intergenic
GAGTGGTGTGTGGGTGAATG+TGG 0.517878 1:+75768605 MsG0180004267.01.T01:CDS
GAGGATGAAGAGAAAGATGA+AGG 0.518847 1:-75768400 None:intergenic
GTGGGTGAATGTGGTGGTGT+CGG 0.523922 1:+75768614 MsG0180004267.01.T01:CDS
GATGGTAGACGAGGCTGATG+AGG 0.526706 1:-75768422 None:intergenic
CACATCCTTGACACGCGGGC+AGG 0.531423 1:-75766926 None:intergenic
AGGGAGAGGAATTCGGTCCA+AGG 0.537016 1:-75768294 None:intergenic
CTTCGGAGAGAGAGGATGGA+AGG 0.538984 1:-75768329 None:intergenic
TTAGTAGGAAACTTCGTCAT+CGG 0.541525 1:+75768172 MsG0180004267.01.T01:intron
TCCGAAGCCACCACGCGCGT+TGG 0.547102 1:+75768345 MsG0180004267.01.T01:CDS
GTGGCTTCGGAGAGAGAGGA+TGG 0.553745 1:-75768333 None:intergenic
TTCGGAGAGAGAGGATGGAA+GGG 0.557932 1:-75768328 None:intergenic
ATGCTAGCTACTGATACTGC+TGG 0.564776 1:+75768729 MsG0180004267.01.T01:CDS
AGGTTAGAATCGTCGATCGA+TGG 0.569363 1:-75768197 None:intergenic
GATGATTATGAATCGCCGTA+TGG 0.570258 1:+75768702 MsG0180004267.01.T01:CDS
ATTGATTCCAACGCGCGTGG+TGG 0.575451 1:-75768352 None:intergenic
ACCAAGGAGTGACCAACTTG+TGG 0.576402 1:-75766963 None:intergenic
GTTTGCATGGTGCGTTGAGG+AGG 0.576839 1:+75768661 MsG0180004267.01.T01:CDS
GCAGTATCAGTAGCTAGCAT+AGG 0.582398 1:-75768726 None:intergenic
ATGGAAGGGAGAGAGAGGAG+AGG 0.583405 1:-75768314 None:intergenic
CGTGGAGAGGATTGATAGTG+TGG 0.585892 1:-75768265 None:intergenic
GCATGGTGCGTTGAGGAGGA+CGG 0.586209 1:+75768665 MsG0180004267.01.T01:CDS
TGACATTGTAAAAGGAGAGG+AGG 0.587600 1:-75768217 None:intergenic
TTCGGTCCAAGGGTGGCGCG+TGG 0.588355 1:-75768283 None:intergenic
ACGACGTTGAACAGCGACAA+AGG 0.588894 1:-75768519 None:intergenic
GGGAGAGGAATTCGGTCCAA+GGG 0.590082 1:-75768293 None:intergenic
CAATGAGGCCAGTGGGACCA+AGG 0.591708 1:-75766979 None:intergenic
GAACAGCGACAAAGGCTCAT+CGG 0.591879 1:-75768511 None:intergenic
TTGAGGAGGACGGATGTTGG+TGG 0.594756 1:+75768675 MsG0180004267.01.T01:CDS
AGAGGAATTCGGTCCAAGGG+TGG 0.596200 1:-75768290 None:intergenic
CGTGGTGGCTTCGGAGAGAG+AGG 0.597408 1:-75768337 None:intergenic
TGTTGTTGTTGTGGCGCTGG+TGG 0.598452 1:+75768557 MsG0180004267.01.T01:CDS
TTCTGACATTGTAAAAGGAG+AGG 0.599228 1:-75768220 None:intergenic
GGTAGACGAGGCTGATGAGG+AGG 0.602901 1:-75768419 None:intergenic
GCGTTGAGGAGGACGGATGT+TGG 0.603625 1:+75768672 MsG0180004267.01.T01:CDS
ACCAACCAGCGAAAGCGACA+AGG 0.609728 1:-75768464 None:intergenic
TGGTGTGTGGGTGAATGTGG+TGG 0.613899 1:+75768608 MsG0180004267.01.T01:CDS
TTTGTCGCTGTTCAACGTCG+TGG 0.617871 1:+75768521 MsG0180004267.01.T01:CDS
GTAGCTAGCATAGGACCATA+CGG 0.624008 1:-75768717 None:intergenic
AAGAGACCAATGAGGCCAGT+GGG 0.628150 1:-75766986 None:intergenic
GTCGCTGTTCAACGTCGTGG+CGG 0.633869 1:+75768524 MsG0180004267.01.T01:CDS
ACCACACATCCTTGACACGC+GGG 0.634631 1:-75766930 None:intergenic
AGGAGGAGAACGATGGCGAG+AGG 0.638618 1:-75768444 None:intergenic
GAGATTGATTCCAACGCGCG+TGG 0.643121 1:-75768355 None:intergenic
GACCACACATCCTTGACACG+CGG 0.649436 1:-75766931 None:intergenic
AGCGACAAGGAGGAGAACGA+TGG 0.650682 1:-75768451 None:intergenic
AAAGAGACCAATGAGGCCAG+TGG 0.663787 1:-75766987 None:intergenic
GCCCGCGTGTCAAGGATGTG+TGG 0.668790 1:+75766929 MsG0180004267.01.T01:CDS
AACCAGCGAAAGCGACAAGG+AGG 0.690375 1:-75768461 None:intergenic
TGGCGAGAGGATGGTAGACG+AGG 0.695341 1:-75768431 None:intergenic
TTTGTTTGCATGGTGCGTTG+AGG 0.700659 1:+75768658 MsG0180004267.01.T01:CDS
ACATGATAAAGAGACCAATG+AGG 0.744527 1:-75766994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATTTATTTCAAATAT+TGG + Chr1:75767039-75767058 MsG0180004267.01.T01:intron 10.0%
!!! ATTTTTTTTTTGTAACAAAA+GGG - Chr1:75767675-75767694 None:intergenic 10.0%
!!! AAGAATTCAAGTTTAATTTT+TGG - Chr1:75767807-75767826 None:intergenic 15.0%
!!! CATTTTTTTTTTGTAACAAA+AGG - Chr1:75767676-75767695 None:intergenic 15.0%
!! AAGGAAAAAAAAACTAAACT+AGG - Chr1:75767643-75767662 None:intergenic 20.0%
!! AGATATATCTATAGATCTAT+AGG + Chr1:75767980-75767999 MsG0180004267.01.T01:intron 20.0%
!! AGGAAAAAAAAACTAAACTA+GGG - Chr1:75767642-75767661 None:intergenic 20.0%
! AACAAAAGGGAAAATCAAAA+AGG - Chr1:75767662-75767681 None:intergenic 25.0%
! AGATCTATAGATATATCTAG+AGG - Chr1:75767978-75767997 None:intergenic 25.0%
! ATCAAATGATTAATCTCAAG+TGG - Chr1:75767862-75767881 None:intergenic 25.0%
! ATGACAATGTTAAATTAGTG+TGG + Chr1:75768033-75768052 MsG0180004267.01.T01:intron 25.0%
! ATGTGTAAGATTTACATACT+TGG + Chr1:75767013-75767032 MsG0180004267.01.T01:intron 25.0%
! CAAATCTTACACATGATAAT+GGG - Chr1:75767075-75767094 None:intergenic 25.0%
! CAAGTATGAAAATTTGATCA+TGG + Chr1:75767457-75767476 MsG0180004267.01.T01:intron 25.0%
!! ATTTTTCATGCTGAGATTTT+GGG + Chr1:75767323-75767342 MsG0180004267.01.T01:intron 25.0%
!! CATTCAAATTCTTTTAGATG+AGG - Chr1:75767430-75767449 None:intergenic 25.0%
!!! ATTTGTCTAAACTTTTGAGT+TGG - Chr1:75767918-75767937 None:intergenic 25.0%
!!! GCGTAAAGTTTTATTTTAGT+AGG + Chr1:75768157-75768176 MsG0180004267.01.T01:intron 25.0%
ACACTTAAGTGTCAATTTCT+TGG - Chr1:75767143-75767162 None:intergenic 30.0%
CCAAATCTTACACATGATAA+TGG - Chr1:75767076-75767095 None:intergenic 30.0%
CCATTATCATGTGTAAGATT+TGG + Chr1:75767073-75767092 MsG0180004267.01.T01:intron 30.0%
GTGACATAAATTTGCATTTG+AGG + Chr1:75768009-75768028 MsG0180004267.01.T01:intron 30.0%
! AGTGTTTCTGACATTGTAAA+AGG - Chr1:75768228-75768247 None:intergenic 30.0%
! ATTTCAAATATTGGCCTCAT+TGG + Chr1:75767048-75767067 MsG0180004267.01.T01:intron 30.0%
! CATTTTTCATGCTGAGATTT+TGG + Chr1:75767322-75767341 MsG0180004267.01.T01:intron 30.0%
!! GCTGATTTTACATTGTCAAT+GGG - Chr1:75768115-75768134 None:intergenic 30.0%
!!! CATACAAGTTCTTTTTTGCA+TGG + Chr1:75767272-75767291 MsG0180004267.01.T01:intron 30.0%
!!! TGCTGATTTTACATTGTCAA+TGG - Chr1:75768116-75768135 None:intergenic 30.0%
!!! TTGTTTGTTGTTTTTGTGAG+TGG + Chr1:75768588-75768607 MsG0180004267.01.T01:CDS 30.0%
ACATGATAAAGAGACCAATG+AGG - Chr1:75766997-75767016 None:intergenic 35.0%
ATCTCAGCATGAAAAATGCA+AGG - Chr1:75767320-75767339 None:intergenic 35.0%
CTCACTTGAGTTTAATCACT+TGG + Chr1:75767938-75767957 MsG0180004267.01.T01:intron 35.0%
GATACACCAATATCACAATC+CGG + Chr1:75768089-75768108 MsG0180004267.01.T01:intron 35.0%
GGGCTTCATTCAAAATAACA+AGG - Chr1:75767562-75767581 None:intergenic 35.0%
GTGGTTAATGAACTACCTTT+AGG - Chr1:75767843-75767862 None:intergenic 35.0%
TTAGTAGGAAACTTCGTCAT+CGG + Chr1:75768172-75768191 MsG0180004267.01.T01:intron 35.0%
TTCTGACATTGTAAAAGGAG+AGG - Chr1:75768223-75768242 None:intergenic 35.0%
! ATTTTACATTGTCAATGGGC+CGG - Chr1:75768111-75768130 None:intergenic 35.0%
! CATTCAAGACATTTGCTAAG+AGG - Chr1:75767605-75767624 None:intergenic 35.0%
! CTTTTAGATGAGGTCAACAA+CGG - Chr1:75767420-75767439 None:intergenic 35.0%
!! ACCATGGTTTGAAGTTTTGT+TGG + Chr1:75767351-75767370 MsG0180004267.01.T01:intron 35.0%
!! CTTACTTTTCGATCGAATCT+CGG - Chr1:75767774-75767793 None:intergenic 35.0%
!! TAGTGTGGCTTCTTTGAAAT+TGG - Chr1:75768253-75768272 None:intergenic 35.0%
!!! CCATGGTTTGAAGTTTTGTT+GGG + Chr1:75767352-75767371 MsG0180004267.01.T01:intron 35.0%
!!! GAGATTTTGGGTTTATACCA+TGG + Chr1:75767335-75767354 MsG0180004267.01.T01:intron 35.0%
!!! TTGAAGTTTTGTTGGGATAC+TGG + Chr1:75767359-75767378 MsG0180004267.01.T01:intron 35.0%
CCACTCAATCTCTATGAAGA+AGG - Chr1:75767493-75767512 None:intergenic 40.0%
CCCAACAAAACTTCAAACCA+TGG - Chr1:75767355-75767374 None:intergenic 40.0%
CCTTCTTCATAGAGATTGAG+TGG + Chr1:75767490-75767509 MsG0180004267.01.T01:intron 40.0%
GAGGATGAAGAGAAAGATGA+AGG - Chr1:75768403-75768422 None:intergenic 40.0%
GATGATTATGAATCGCCGTA+TGG + Chr1:75768702-75768721 MsG0180004267.01.T01:CDS 40.0%
TGACATTGTAAAAGGAGAGG+AGG - Chr1:75768220-75768239 None:intergenic 40.0%
TTCTGAACGATTCGTCCTAA+AGG + Chr1:75767825-75767844 MsG0180004267.01.T01:intron 40.0%
! GTCTTTTTGTCTCCACAAGT+TGG + Chr1:75766951-75766970 MsG0180004267.01.T01:CDS 40.0%
! TCTCAGTTGGGAGATTTTGA+TGG + Chr1:75767236-75767255 MsG0180004267.01.T01:intron 40.0%
! TGATGATCGTGTTGTTGTTG+TGG + Chr1:75768548-75768567 MsG0180004267.01.T01:CDS 40.0%
!! ACATGATAATGGGACCAATG+AGG - Chr1:75767065-75767084 None:intergenic 40.0%
!! TGTTTTTGTGAGTGGTGTGT+GGG + Chr1:75768596-75768615 MsG0180004267.01.T01:CDS 40.0%
!!! TTGTTTTTGTGAGTGGTGTG+TGG + Chr1:75768595-75768614 MsG0180004267.01.T01:CDS 40.0%
AAGAGGACTGAGGTCATATC+AGG - Chr1:75767588-75767607 None:intergenic 45.0%
AATGGGCCGGATTGTGATAT+TGG - Chr1:75768098-75768117 None:intergenic 45.0%
ACTGAGGTCATATCAGGAGA+GGG - Chr1:75767582-75767601 None:intergenic 45.0%
AGGTTAGAATCGTCGATCGA+TGG - Chr1:75768200-75768219 None:intergenic 45.0%
AGTCTGCACATGTTCTCAGT+TGG + Chr1:75767223-75767242 MsG0180004267.01.T01:intron 45.0%
ATGCTAGCTACTGATACTGC+TGG + Chr1:75768729-75768748 MsG0180004267.01.T01:CDS 45.0%
CTTGTAACCCCAGCTTCTTA+GGG + Chr1:75767730-75767749 MsG0180004267.01.T01:intron 45.0%
GCAGTATCAGTAGCTAGCAT+AGG - Chr1:75768729-75768748 None:intergenic 45.0%
GTAGCTAGCATAGGACCATA+CGG - Chr1:75768720-75768739 None:intergenic 45.0%
GTCTGCACATGTTCTCAGTT+GGG + Chr1:75767224-75767243 MsG0180004267.01.T01:intron 45.0%
TCTTGTAACCCCAGCTTCTT+AGG + Chr1:75767729-75767748 MsG0180004267.01.T01:intron 45.0%
TTGTAACCCCAGCTTCTTAG+GGG + Chr1:75767731-75767750 MsG0180004267.01.T01:intron 45.0%
TTTGTTTGCATGGTGCGTTG+AGG + Chr1:75768658-75768677 MsG0180004267.01.T01:CDS 45.0%
! AACCTTTTCCCCTAAGAAGC+TGG - Chr1:75767742-75767761 None:intergenic 45.0%
! ACCTTTTCCCCTAAGAAGCT+GGG - Chr1:75767741-75767760 None:intergenic 45.0%
! GACATTTGCTAAGAGGACTG+AGG - Chr1:75767598-75767617 None:intergenic 45.0%
!! AATCAGCATTGACTGAGCAC+TGG + Chr1:75768128-75768147 MsG0180004267.01.T01:intron 45.0%
AAAGAGACCAATGAGGCCAG+TGG - Chr1:75766990-75767009 None:intergenic 50.0%
AAGAGACCAATGAGGCCAGT+GGG - Chr1:75766989-75767008 None:intergenic 50.0%
ACCAAGGAGTGACCAACTTG+TGG - Chr1:75766966-75766985 None:intergenic 50.0%
ACGACGTTGAACAGCGACAA+AGG - Chr1:75768522-75768541 None:intergenic 50.0%
AGACTGCTGAACACAGTGAG+AGG - Chr1:75767208-75767227 None:intergenic 50.0%
AGAGGAGAGGGAGAGGAATT+CGG - Chr1:75768304-75768323 None:intergenic 50.0%
GAACAGCGACAAAGGCTCAT+CGG - Chr1:75768514-75768533 None:intergenic 50.0%
GACTGAGGTCATATCAGGAG+AGG - Chr1:75767583-75767602 None:intergenic 50.0%
GCGGGGATTGTTTGTTTGCA+TGG + Chr1:75768648-75768667 MsG0180004267.01.T01:CDS 50.0%
TGCTGAACACAGTGAGAGGT+AGG - Chr1:75767204-75767223 None:intergenic 50.0%
TTCGGAGAGAGAGGATGGAA+GGG - Chr1:75768331-75768350 None:intergenic 50.0%
TTTGTCGCTGTTCAACGTCG+TGG + Chr1:75768521-75768540 MsG0180004267.01.T01:CDS 50.0%
! CCTTTTCCCCTAAGAAGCTG+GGG - Chr1:75767740-75767759 None:intergenic 50.0%
!! CGTGGAGAGGATTGATAGTG+TGG - Chr1:75768268-75768287 None:intergenic 50.0%
!! TCCACAAGTTGGTCACTCCT+TGG + Chr1:75766962-75766981 MsG0180004267.01.T01:CDS 50.0%
!!! GAATGTGGTGGTGTCGGTTT+TGG + Chr1:75768620-75768639 MsG0180004267.01.T01:CDS 50.0%
AACCAGCGAAAGCGACAAGG+AGG - Chr1:75768464-75768483 None:intergenic 55.0%
ACCAACCAGCGAAAGCGACA+AGG - Chr1:75768467-75768486 None:intergenic 55.0%
ACCACACATCCTTGACACGC+GGG - Chr1:75766933-75766952 None:intergenic 55.0%
AGAGGAATTCGGTCCAAGGG+TGG - Chr1:75768293-75768312 None:intergenic 55.0%
AGAGGATGGAAGGGAGAGAG+AGG - Chr1:75768322-75768341 None:intergenic 55.0%
AGCGACAAGGAGGAGAACGA+TGG - Chr1:75768454-75768473 None:intergenic 55.0%
AGGGAGAGGAATTCGGTCCA+AGG - Chr1:75768297-75768316 None:intergenic 55.0%
ATGGAAGGGAGAGAGAGGAG+AGG - Chr1:75768317-75768336 None:intergenic 55.0%
CCCCAGCTTCTTAGGGGAAA+AGG + Chr1:75767737-75767756 MsG0180004267.01.T01:intron 55.0%
CTTCGGAGAGAGAGGATGGA+AGG - Chr1:75768332-75768351 None:intergenic 55.0%
GACCACACATCCTTGACACG+CGG - Chr1:75766934-75766953 None:intergenic 55.0%
GAGTGGTGTGTGGGTGAATG+TGG + Chr1:75768605-75768624 MsG0180004267.01.T01:CDS 55.0%
GATGGTAGACGAGGCTGATG+AGG - Chr1:75768425-75768444 None:intergenic 55.0%
GGGAGAGGAATTCGGTCCAA+GGG - Chr1:75768296-75768315 None:intergenic 55.0%
GTTTGCATGGTGCGTTGAGG+AGG + Chr1:75768661-75768680 MsG0180004267.01.T01:CDS 55.0%
TGGAAGGGAGAGAGAGGAGA+GGG - Chr1:75768316-75768335 None:intergenic 55.0%
TGGTGTGTGGGTGAATGTGG+TGG + Chr1:75768608-75768627 MsG0180004267.01.T01:CDS 55.0%
TTGAGGAGGACGGATGTTGG+TGG + Chr1:75768675-75768694 MsG0180004267.01.T01:CDS 55.0%
! ATTGATTCCAACGCGCGTGG+TGG - Chr1:75768355-75768374 None:intergenic 55.0%
! GAGATTGATTCCAACGCGCG+TGG - Chr1:75768358-75768377 None:intergenic 55.0%
! GTGGGTGAATGTGGTGGTGT+CGG + Chr1:75768614-75768633 MsG0180004267.01.T01:CDS 55.0%
! TCGTGTTGTTGTTGTGGCGC+TGG + Chr1:75768554-75768573 MsG0180004267.01.T01:CDS 55.0%
! TGTTGTTGTTGTGGCGCTGG+TGG + Chr1:75768557-75768576 MsG0180004267.01.T01:CDS 55.0%
!! GAGGACGGATGTTGGTGGTT+TGG + Chr1:75768680-75768699 MsG0180004267.01.T01:CDS 55.0%
!! TCCTTGTCGCTTTCGCTGGT+TGG + Chr1:75768463-75768482 MsG0180004267.01.T01:CDS 55.0%
!!! GGTGGTGTCGGTTTTGGTTG+CGG + Chr1:75768626-75768645 MsG0180004267.01.T01:CDS 55.0%
AGGAGGAGAACGATGGCGAG+AGG - Chr1:75768447-75768466 None:intergenic 60.0%
CAATGAGGCCAGTGGGACCA+AGG - Chr1:75766982-75767001 None:intergenic 60.0%
GCATGGTGCGTTGAGGAGGA+CGG + Chr1:75768665-75768684 MsG0180004267.01.T01:CDS 60.0%
GCGTTGAGGAGGACGGATGT+TGG + Chr1:75768672-75768691 MsG0180004267.01.T01:CDS 60.0%
GGAGAACGATGGCGAGAGGA+TGG - Chr1:75768443-75768462 None:intergenic 60.0%
GGTAGACGAGGCTGATGAGG+AGG - Chr1:75768422-75768441 None:intergenic 60.0%
GTCGCTGTTCAACGTCGTGG+CGG + Chr1:75768524-75768543 MsG0180004267.01.T01:CDS 60.0%
GTGGCTTCGGAGAGAGAGGA+TGG - Chr1:75768336-75768355 None:intergenic 60.0%
TGGCGAGAGGATGGTAGACG+AGG - Chr1:75768434-75768453 None:intergenic 60.0%
TGGTCACTCCTTGGTCCCAC+TGG + Chr1:75766971-75766990 MsG0180004267.01.T01:CDS 60.0%
! CTTGGTCCCACTGGCCTCAT+TGG + Chr1:75766980-75766999 MsG0180004267.01.T01:CDS 60.0%
! GTTTTCCTGCCCGCGTGTCA+AGG + Chr1:75766921-75766940 MsG0180004267.01.T01:CDS 60.0%
!! CTCCTCCTTGTCGCTTTCGC+TGG + Chr1:75768459-75768478 MsG0180004267.01.T01:CDS 60.0%
!!! GGTGTCGGTTTTGGTTGCGG+CGG + Chr1:75768629-75768648 MsG0180004267.01.T01:CDS 60.0%
!!! GTGTCGGTTTTGGTTGCGGC+GGG + Chr1:75768630-75768649 MsG0180004267.01.T01:CDS 60.0%
!!! TGTCGGTTTTGGTTGCGGCG+GGG + Chr1:75768631-75768650 MsG0180004267.01.T01:CDS 60.0%
CACATCCTTGACACGCGGGC+AGG - Chr1:75766929-75766948 None:intergenic 65.0%
CGTGGTGGCTTCGGAGAGAG+AGG - Chr1:75768340-75768359 None:intergenic 65.0%
GCCCGCGTGTCAAGGATGTG+TGG + Chr1:75766929-75766948 MsG0180004267.01.T01:CDS 65.0%
GGGAGAGAGAGGAGAGGGAG+AGG - Chr1:75768311-75768330 None:intergenic 65.0%
TCCAACGCGCGTGGTGGCTT+CGG - Chr1:75768349-75768368 None:intergenic 65.0%
TCCAAGGGTGGCGCGTGGAG+AGG - Chr1:75768281-75768300 None:intergenic 70.0%
TCCGAAGCCACCACGCGCGT+TGG + Chr1:75768345-75768364 MsG0180004267.01.T01:CDS 70.0%
TCCTCTCCACGCGCCACCCT+TGG + Chr1:75768277-75768296 MsG0180004267.01.T01:CDS 70.0%
TTCGGTCCAAGGGTGGCGCG+TGG - Chr1:75768286-75768305 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75766898 75768770 75766898 ID=MsG0180004267.01;Name=MsG0180004267.01
Chr1 mRNA 75766898 75768770 75766898 ID=MsG0180004267.01.T01;Parent=MsG0180004267.01;Name=MsG0180004267.01.T01;_AED=0.39;_eAED=0.41;_QI=0|0|0|0.5|0|0.5|2|0|236
Chr1 exon 75766898 75767016 75766898 ID=MsG0180004267.01.T01:exon:12510;Parent=MsG0180004267.01.T01
Chr1 exon 75768179 75768770 75768179 ID=MsG0180004267.01.T01:exon:12511;Parent=MsG0180004267.01.T01
Chr1 CDS 75766898 75767016 75766898 ID=MsG0180004267.01.T01:cds;Parent=MsG0180004267.01.T01
Chr1 CDS 75768179 75768770 75768179 ID=MsG0180004267.01.T01:cds;Parent=MsG0180004267.01.T01
Gene Sequence

>MsG0180004267.01.T01

AGTGAAAATATGTTACATGCTTTGTTTTCCTGCCCGCGTGTCAAGGATGTGTGGTCTTTTTGTCTCCACAAGTTGGTCACTCCTTGGTCCCACTGGCCTCATTGGTCTCTTTATCATGTGAAACTTCGTCATCGGCACCATCGATCGACGATTCTAACCTCCTCTCCTTTTACAATGTCAGAAACACTCTCCAATTTCAAAGAAGCCACACTATCAATCCTCTCCACGCGCCACCCTTGGACCGAATTCCTCTCCCTCTCCTCTCTCTCCCTTCCATCCTCTCTCTCCGAAGCCACCACGCGCGTTGGAATCAATCTCACTCGCTTTCTCTTCAACTACACCTTCATCTTTCTCTTCATCCTCCTCATCAGCCTCGTCTACCATCCTCTCGCCATCGTTCTCCTCCTTGTCGCTTTCGCTGGTTGGTACTTTCTGTTCTTCTCACGTGACTCCGATGAGCCTTTGTCGCTGTTCAACGTCGTGGCGGTTGATGATCGTGTTGTTGTTGTGGCGCTGGTGGTTTTTAGTTTGTTTGTTGTTTTTGTGAGTGGTGTGTGGGTGAATGTGGTGGTGTCGGTTTTGGTTGCGGCGGGGATTGTTTGTTTGCATGGTGCGTTGAGGAGGACGGATGTTGGTGGTTTGGATGATTATGAATCGCCGTATGGTCCTATGCTAGCTACTGATACTGCTGGTCCTTATGCACCTGTTTGA
Protein sequence

>MsG0180004267.01.T01

SENMLHALFSCPRVKDVWSFCLHKLVTPWSHWPHWSLYHVKLRHRHHRSTILTSSPFTMSETLSNFKEATLSILSTRHPWTEFLSLSSLSLPSSLSEATTRVGINLTRFLFNYTFIFLFILLISLVYHPLAIVLLLVAFAGWYFLFFSRDSDEPLSLFNVVAVDDRVVVVALVVFSLFVVFVSGVWVNVVVSVLVAAGIVCLHGALRRTDVGGLDDYESPYGPMLATDTAGPYAPV*