AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018439.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018439.01.T01 MTR_4g011720 82.955 352 22 1 1 352 1 314 0.0 587
MsG0480018439.01.T01 MTR_4g011690 74.504 353 51 2 1 352 1 315 0.0 537
MsG0480018439.01.T01 MTR_4g011720 90.980 255 23 0 1 255 1 255 1.12e-169 473
MsG0480018439.01.T01 MTR_7g090520 33.708 356 192 6 1 352 1 316 8.86e-70 221
MsG0480018439.01.T01 MTR_1g011600 33.434 332 168 8 1 320 1 291 5.23e-55 182
MsG0480018439.01.T01 MTR_3g108520 31.977 344 185 8 1 336 1 303 3.21e-54 181
MsG0480018439.01.T01 MTR_4g021380 29.429 350 199 7 4 344 2 312 7.29e-48 164
MsG0480018439.01.T01 MTR_4g021360 29.096 354 201 8 1 345 1 313 1.76e-45 158
MsG0480018439.01.T01 MTR_6g035160 38.857 175 67 3 164 336 29 165 4.49e-33 121
MsG0480018439.01.T01 MTR_8g030880 26.970 330 188 7 35 352 29 317 1.55e-29 115
MsG0480018439.01.T01 MTR_7g077670 26.606 327 192 7 35 352 30 317 3.14e-25 104
MsG0480018439.01.T01 MTR_5g025090 26.537 309 181 7 32 338 21 285 1.81e-24 101
MsG0480018439.01.T01 MTR_5g027230 25.914 301 177 6 32 330 22 278 1.51e-23 99.4
MsG0480018439.01.T01 MTR_5g025050 26.433 314 185 6 19 330 8 277 4.30e-23 98.2
MsG0480018439.01.T01 MTR_1g070120 25.079 315 186 7 32 339 57 328 4.95e-23 98.6
MsG0480018439.01.T01 MTR_8g024120 24.784 347 193 8 5 337 38 330 9.26e-22 95.1
MsG0480018439.01.T01 MTR_5g024940 26.582 316 165 9 17 330 9 259 1.07e-21 94.0
MsG0480018439.01.T01 MTR_4g074130 25.836 329 185 10 8 330 39 314 4.73e-21 93.2
MsG0480018439.01.T01 MTR_7g102820 25.208 361 194 10 8 344 66 374 5.03e-21 93.6
MsG0480018439.01.T01 MTR_8g074050 28.000 225 118 6 116 335 158 343 9.05e-21 92.4
MsG0480018439.01.T01 MTR_1g070135 25.472 318 177 7 32 337 57 326 1.39e-20 91.7
MsG0480018439.01.T01 MTR_3g092890 24.776 335 187 7 19 338 41 325 4.31e-20 90.1
MsG0480018439.01.T01 MTR_7g451860 25.970 335 178 10 8 330 40 316 8.12e-20 89.4
MsG0480018439.01.T01 MTR_7g047670 25.970 335 178 10 8 330 40 316 8.12e-20 89.4
MsG0480018439.01.T01 MTR_1g070085 24.127 315 188 5 32 338 56 327 9.19e-20 89.4
MsG0480018439.01.T01 MTR_1g070085 24.127 315 188 5 32 338 56 327 9.19e-20 89.4
MsG0480018439.01.T01 MTR_5g005570 25.680 331 181 12 8 330 36 309 1.07e-19 89.0
MsG0480018439.01.T01 MTR_1g011580 22.973 296 184 4 19 311 66 320 3.45e-19 87.8
MsG0480018439.01.T01 MTR_8g075890 24.277 346 207 10 8 344 38 337 1.02e-18 86.7
MsG0480018439.01.T01 MTR_6g015950 24.601 313 188 8 32 337 55 326 1.20e-18 85.9
MsG0480018439.01.T01 MTR_2g437380 26.480 321 186 8 31 343 71 349 1.84e-18 85.9
MsG0480018439.01.T01 MTR_8g093930 23.585 318 186 10 33 337 70 343 3.30e-18 85.1
MsG0480018439.01.T01 MTR_3g096500 21.958 337 210 7 7 333 67 360 4.32e-18 85.1
MsG0480018439.01.T01 MTR_7g068650 26.300 327 185 9 27 341 71 353 6.80e-18 84.3
MsG0480018439.01.T01 MTR_1g070085 24.554 224 129 3 116 338 65 249 1.01e-17 82.4
MsG0480018439.01.T01 MTR_4g015790 26.087 322 182 9 32 341 84 361 1.04e-17 83.6
MsG0480018439.01.T01 MTR_5g032880 26.220 328 194 7 20 339 385 672 1.38e-17 84.3
MsG0480018439.01.T01 MTR_7g062570 25.000 360 202 12 3 352 52 353 1.58e-17 83.2
MsG0480018439.01.T01 MTR_8g075830 25.000 324 188 9 31 344 59 337 2.04e-17 82.8
MsG0480018439.01.T01 MTR_1g070100 24.000 225 131 3 116 339 61 246 2.20e-17 81.3
MsG0480018439.01.T01 MTR_0009s0050 25.641 312 187 7 35 341 68 339 2.87e-17 82.4
MsG0480018439.01.T01 MTR_1g062110 22.841 359 199 9 8 344 65 367 3.19e-17 82.4
MsG0480018439.01.T01 MTR_0009s0050 25.641 312 187 7 35 341 68 339 3.21e-17 82.0
MsG0480018439.01.T01 MTR_7g062580 24.781 343 202 11 4 338 50 344 3.73e-17 82.0
MsG0480018439.01.T01 MTR_1g102070 24.522 314 182 9 33 333 82 353 4.13e-17 82.0
MsG0480018439.01.T01 MTR_4g087090 23.964 338 208 6 3 330 27 325 4.85e-17 81.6
MsG0480018439.01.T01 MTR_4g116010 24.528 318 186 10 32 339 66 339 8.33e-17 80.9
MsG0480018439.01.T01 MTR_5g055900 25.240 313 187 6 35 341 68 339 1.14e-16 80.5
MsG0480018439.01.T01 MTR_0009s0050 27.193 228 125 4 116 341 53 241 1.53e-16 79.0
MsG0480018439.01.T01 MTR_0009s0050 27.193 228 125 4 116 341 53 241 2.45e-16 78.2
MsG0480018439.01.T01 MTR_2g025120 23.410 346 204 10 9 347 4 295 3.04e-16 79.0
MsG0480018439.01.T01 MTR_1g034140 22.601 323 181 8 31 330 42 318 3.22e-16 79.0
MsG0480018439.01.T01 MTR_0328s0030 25.575 348 207 11 3 344 39 340 3.40e-16 79.0
MsG0480018439.01.T01 MTR_2g437380 26.840 231 127 4 116 343 64 255 4.25e-16 77.8
MsG0480018439.01.T01 MTR_3g063180 24.359 234 133 4 115 343 151 345 4.38e-16 79.0
MsG0480018439.01.T01 MTR_6g464620 27.523 218 114 4 124 336 187 365 4.77e-16 79.0
MsG0480018439.01.T01 MTR_3g117420 26.222 225 122 6 116 335 158 343 6.82e-16 78.2
MsG0480018439.01.T01 MTR_8g093980 22.327 318 200 5 33 342 81 359 8.74e-16 78.2
MsG0480018439.01.T01 MTR_2g083000 23.171 328 193 8 8 330 32 305 8.92e-16 77.8
MsG0480018439.01.T01 MTR_3g070860 23.362 351 199 10 9 341 50 348 1.03e-15 77.8
MsG0480018439.01.T01 MTR_5g059130 23.442 337 193 8 8 331 43 327 1.52e-15 77.0
MsG0480018439.01.T01 MTR_1g033810 26.724 348 203 11 4 344 42 344 2.07e-15 77.0
MsG0480018439.01.T01 MTR_7g102720 23.423 333 193 8 25 343 44 328 2.75e-15 76.3
MsG0480018439.01.T01 MTR_3g058610 24.000 325 194 8 29 344 57 337 3.03e-15 76.3
MsG0480018439.01.T01 MTR_5g055690 25.352 355 200 13 3 344 41 343 3.79e-15 75.9
MsG0480018439.01.T01 MTR_8g064200 26.032 315 186 9 36 344 80 353 6.16e-15 75.5
MsG0480018439.01.T01 MTR_7g063730 25.698 358 203 13 8 352 63 370 7.93e-15 75.1
MsG0480018439.01.T01 MTR_4g100600 23.631 347 202 10 1 331 1 300 8.25e-15 74.7
MsG0480018439.01.T01 MTR_8g064200 26.032 315 186 9 36 344 75 348 8.99e-15 75.1
MsG0480018439.01.T01 MTR_2g102570 22.671 322 198 7 19 331 55 334 9.00e-15 75.1
MsG0480018439.01.T01 MTR_4g087140 25.346 217 121 3 118 331 150 328 1.54e-14 74.3
MsG0480018439.01.T01 MTR_5g048550 25.000 348 207 11 1 341 39 339 4.00e-14 73.2
MsG0480018439.01.T01 MTR_1g070135 26.941 219 138 4 32 238 57 265 4.06e-14 72.4
MsG0480018439.01.T01 MTR_7g062600 24.332 337 205 11 12 341 51 344 4.54e-14 72.8
MsG0480018439.01.T01 MTR_1g070080 25.000 224 129 3 116 339 144 328 4.97e-14 72.8
MsG0480018439.01.T01 MTR_5g082750 24.375 320 189 8 32 341 71 347 6.56e-14 72.4
MsG0480018439.01.T01 MTR_3g045230 21.449 345 208 7 9 343 56 347 8.71e-14 72.0
MsG0480018439.01.T01 MTR_3g043900 22.419 339 211 8 9 343 56 346 9.15e-14 72.0
MsG0480018439.01.T01 MTR_4g100590 25.146 342 198 14 1 331 1 295 9.42e-14 71.6
MsG0480018439.01.T01 MTR_1g062110 26.190 252 146 8 8 237 65 298 1.05e-13 71.6
MsG0480018439.01.T01 MTR_3g040410 23.256 301 182 6 7 303 4 259 2.71e-13 70.1
MsG0480018439.01.T01 MTR_7g016090 23.659 317 183 9 33 337 56 325 7.64e-13 68.9
MsG0480018439.01.T01 MTR_7g016090 23.659 317 183 9 33 337 58 327 7.67e-13 68.9
MsG0480018439.01.T01 MTR_7g062550 23.724 333 198 10 27 352 75 358 1.69e-12 68.2
MsG0480018439.01.T01 MTR_2g083030 24.251 334 191 11 4 330 32 310 2.50e-12 67.4
MsG0480018439.01.T01 MTR_8g062600 22.316 354 213 14 9 349 67 371 2.82e-12 67.4
MsG0480018439.01.T01 MTR_5g085330 24.561 342 186 13 9 334 5 290 2.90e-12 67.0
MsG0480018439.01.T01 MTR_2g072890 23.529 323 200 8 27 344 69 349 2.90e-12 67.4
MsG0480018439.01.T01 MTR_2g025120 24.675 231 159 6 9 234 4 224 3.28e-12 65.9
MsG0480018439.01.T01 MTR_3g091360 23.669 338 199 9 4 331 47 335 4.26e-12 67.0
MsG0480018439.01.T01 MTR_3g083370 22.892 332 200 9 9 334 4 285 7.47e-12 65.9
MsG0480018439.01.T01 MTR_3g072820 21.958 337 196 9 8 330 41 324 1.17e-11 65.5
MsG0480018439.01.T01 MTR_4g115990 24.561 228 128 6 116 339 131 318 2.10e-11 64.7
MsG0480018439.01.T01 MTR_3g088565 21.765 340 208 8 9 338 3 294 2.51e-11 64.3
MsG0480018439.01.T01 MTR_5g048850 25.439 228 129 4 116 341 151 339 6.23e-11 63.5
MsG0480018439.01.T01 MTR_5g055690 28.340 247 150 12 3 236 41 273 6.72e-11 62.8
MsG0480018439.01.T01 MTR_3g464530 26.147 218 128 8 35 233 49 252 9.33e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018439.01.T01 AT1G52820 54.085 355 122 2 1 352 1 317 1.64e-139 399
MsG0480018439.01.T01 AT4G03070 46.439 351 139 4 8 351 13 321 9.93e-109 321
MsG0480018439.01.T01 AT1G52820 59.833 239 93 1 1 236 1 239 3.55e-103 304
MsG0480018439.01.T01 AT1G52790 39.080 348 170 4 6 351 2 309 6.08e-88 267
MsG0480018439.01.T01 AT1G28030 41.899 358 158 8 3 352 7 322 1.85e-86 264
MsG0480018439.01.T01 AT1G52800 38.506 348 173 4 6 352 7 314 5.72e-84 257
MsG0480018439.01.T01 AT1G52810 39.542 349 137 8 8 352 11 289 3.49e-74 231
MsG0480018439.01.T01 AT1G80320 32.222 360 194 6 1 352 1 318 1.43e-60 197
MsG0480018439.01.T01 AT1G15540 31.956 363 192 7 1 352 4 322 2.38e-57 189
MsG0480018439.01.T01 AT1G15540 31.956 363 192 7 1 352 1 319 2.63e-57 189
MsG0480018439.01.T01 AT1G15540 31.956 363 192 7 1 352 1 319 2.63e-57 189
MsG0480018439.01.T01 AT1G15540 31.956 363 192 7 1 352 8 326 2.89e-57 189
MsG0480018439.01.T01 AT4G03050 44.444 189 101 2 1 189 1 185 3.23e-48 168
MsG0480018439.01.T01 AT4G03050 37.143 175 71 2 179 352 271 407 6.99e-35 132
MsG0480018439.01.T01 AT4G03050 44.444 189 101 2 1 189 1 185 3.23e-48 168
MsG0480018439.01.T01 AT4G03050 37.143 175 71 2 179 352 271 407 6.99e-35 132
MsG0480018439.01.T01 AT4G23340 26.970 330 188 8 19 338 13 299 1.46e-25 105
MsG0480018439.01.T01 AT2G36690 25.212 353 193 9 8 344 60 357 3.56e-21 93.6
MsG0480018439.01.T01 AT2G36690 25.212 353 193 9 8 344 60 357 3.56e-21 93.6
MsG0480018439.01.T01 AT3G51240 25.000 348 202 12 8 344 37 336 3.61e-19 87.8
MsG0480018439.01.T01 AT4G21690 23.473 311 184 7 35 331 63 333 6.06e-19 87.0
MsG0480018439.01.T01 AT1G15550 23.625 309 191 3 31 332 69 339 1.94e-18 85.9
MsG0480018439.01.T01 AT5G24530 24.629 337 186 8 19 337 41 327 5.41e-18 84.3
MsG0480018439.01.T01 AT5G51310 24.561 342 191 10 19 338 8 304 1.19e-17 83.2
MsG0480018439.01.T01 AT5G05600 25.697 323 191 9 27 341 79 360 3.70e-17 82.0
MsG0480018439.01.T01 AT3G55970 23.460 341 188 8 15 337 63 348 4.09e-17 82.0
MsG0480018439.01.T01 AT1G14120 25.974 308 186 6 19 325 11 277 6.34e-17 80.9
MsG0480018439.01.T01 AT1G14120 25.974 308 186 6 19 325 11 277 6.34e-17 80.9
MsG0480018439.01.T01 AT1G14120 25.974 308 186 6 19 325 11 277 6.34e-17 80.9
MsG0480018439.01.T01 AT1G80330 24.540 326 192 9 19 332 52 335 6.65e-17 81.3
MsG0480018439.01.T01 AT1G78550 23.151 311 194 7 36 341 77 347 1.07e-16 80.9
MsG0480018439.01.T01 AT1G50960 25.839 298 172 7 8 301 39 291 1.56e-16 80.1
MsG0480018439.01.T01 AT3G21420 25.776 322 186 9 32 343 77 355 1.98e-16 80.1
MsG0480018439.01.T01 AT4G21200 25.974 308 172 10 8 309 41 298 2.84e-16 79.3
MsG0480018439.01.T01 AT1G14130 23.473 311 194 5 19 327 12 280 3.97e-16 78.6
MsG0480018439.01.T01 AT1G78550 24.561 285 170 8 62 341 25 269 4.25e-16 77.8
MsG0480018439.01.T01 AT3G51240 26.027 292 159 10 64 344 7 252 9.17e-16 77.0
MsG0480018439.01.T01 AT3G11180 25.298 336 196 9 17 341 98 389 3.77e-15 76.6
MsG0480018439.01.T01 AT3G11180 24.784 347 205 10 17 352 98 399 4.27e-15 76.3
MsG0480018439.01.T01 AT2G44800 25.281 356 197 10 3 344 48 348 5.08e-15 75.9
MsG0480018439.01.T01 AT5G63600 21.173 307 191 6 32 331 49 311 1.83e-14 73.9
MsG0480018439.01.T01 AT3G55970 25.000 240 145 7 15 236 63 285 2.17e-14 73.2
MsG0480018439.01.T01 AT5G63600 22.078 308 186 7 32 331 49 310 3.84e-14 72.8
MsG0480018439.01.T01 AT3G13610 23.864 352 204 10 3 343 56 354 3.97e-14 73.2
MsG0480018439.01.T01 AT5G05600 29.167 216 142 8 27 234 79 291 5.41e-14 72.0
MsG0480018439.01.T01 AT2G38240 26.183 317 164 13 33 330 66 331 1.69e-13 71.2
MsG0480018439.01.T01 AT5G43440 27.326 172 111 7 126 293 176 337 2.15e-13 70.9
MsG0480018439.01.T01 AT1G06620 23.151 311 193 10 32 337 83 352 3.99e-13 70.1
MsG0480018439.01.T01 AT1G30040 22.684 313 190 6 29 330 41 312 4.04e-13 70.1
MsG0480018439.01.T01 AT5G43440 30.435 115 78 2 126 239 176 289 8.73e-13 68.6
MsG0480018439.01.T01 AT1G80340 27.083 240 156 5 2 233 43 271 1.57e-12 68.2
MsG0480018439.01.T01 AT4G25300 23.734 316 193 8 36 344 76 350 2.63e-12 67.8
MsG0480018439.01.T01 AT1G55290 21.988 332 207 7 18 343 69 354 3.48e-12 67.4
MsG0480018439.01.T01 AT5G63590 23.636 330 185 12 19 330 17 297 4.20e-12 66.6
MsG0480018439.01.T01 AT1G06620 26.087 207 144 5 32 234 83 284 6.02e-12 65.9
MsG0480018439.01.T01 AT5G59530 21.905 315 214 12 8 309 57 352 1.23e-11 65.5
MsG0480018439.01.T01 AT5G43450 21.975 314 202 10 9 306 61 347 1.99e-11 65.1
MsG0480018439.01.T01 AT4G10500 21.302 338 209 7 9 337 44 333 2.51e-11 64.7
MsG0480018439.01.T01 AT3G19000 23.684 228 145 6 29 234 50 270 3.24e-11 63.5
MsG0480018439.01.T01 AT1G30040 24.651 215 148 5 30 233 42 253 4.50e-11 63.2
MsG0480018439.01.T01 AT5G63595 20.979 286 166 6 19 301 28 256 7.09e-11 62.8
MsG0480018439.01.T01 AT2G34555 22.671 322 197 7 29 339 37 317 8.44e-11 62.8

Find 118 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 4:-4920091 None:intergenic
AATTATTAGGAAGATGATTT+TGG 0.182671 4:+4919920 MsG0480018439.01.T01:CDS
CATAACCCTGAGACGGTAAT+TGG 0.234620 4:-4919988 None:intergenic
GCTTATCCATTGTTCATCTT+TGG 0.262260 4:-4920123 None:intergenic
TTGAGTTGGATCAAATTATT+AGG 0.271655 4:+4919907 MsG0480018439.01.T01:CDS
TAACTCCCAATTGGGACTTT+TGG 0.274880 4:-4919208 None:intergenic
TCCATCCGGCCACAAGATAT+TGG 0.294565 4:-4919484 None:intergenic
GGGAAGGACAGGTGAAAATA+TGG 0.295469 4:+4919128 MsG0480018439.01.T01:exon
GCATTGACCTTAATCAAAAT+AGG 0.296375 4:+4919100 MsG0480018439.01.T01:five_prime_UTR
CTTCATTAGTTACCAATTGA+TGG 0.316531 4:-4920232 None:intergenic
TATATGTTGTTTGCATTCAT+TGG 0.322888 4:+4920893 MsG0480018439.01.T01:three_prime_UTR
AAGCCTTATGATGGCTATAT+TGG 0.334407 4:+4919384 MsG0480018439.01.T01:CDS
CCTTAATCAAAATAGGGAAT+AGG 0.359403 4:+4919107 MsG0480018439.01.T01:five_prime_UTR
AAGACAATTAGTGGAAGCTT+TGG 0.371289 4:-4919165 None:intergenic
CTCATCATCACCCGGTGAAA+TGG 0.378285 4:-4920431 None:intergenic
GGACTTCACTAACTCCCAAT+TGG 0.386844 4:-4919217 None:intergenic
AAATGCATGTGACCACGATC+TGG 0.392639 4:-4920301 None:intergenic
CTTAATCAAAATAGGGAATA+GGG 0.394693 4:+4919108 MsG0480018439.01.T01:five_prime_UTR
TTTATAATGTACCCTCCATT+GGG 0.397954 4:-4920494 None:intergenic
TACAAGGCATTAGTAGAGTA+TGG 0.398278 4:+4919246 MsG0480018439.01.T01:CDS
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4:+4920420 MsG0480018439.01.T01:CDS
CATTGACCTTAATCAAAATA+GGG 0.404620 4:+4919101 MsG0480018439.01.T01:five_prime_UTR
CTATAGCTTATGTTATTAAG+AGG 0.409102 4:+4920796 MsG0480018439.01.T01:three_prime_UTR
CATCAATTGGTAACTAATGA+AGG 0.413762 4:+4920233 MsG0480018439.01.T01:CDS
TTAAGTAGCTTAGTCTCTAA+AGG 0.419629 4:-4919351 None:intergenic
CTCCTCAGAGAAGGAATGTA+TGG 0.419991 4:-4919880 None:intergenic
CTACTAATGCCTTGTAGACT+TGG 0.421084 4:-4919239 None:intergenic
ATTTATAAATAACCATCAAT+TGG 0.422148 4:+4920220 MsG0480018439.01.T01:CDS
CAAAAGGCTTAAAGAGTAAA+GGG 0.424456 4:-4920547 None:intergenic
ACTCAACCAATTACCGTCTC+AGG 0.434283 4:+4919982 MsG0480018439.01.T01:CDS
AGGTTATTGAAGACAATTAG+TGG 0.438262 4:-4919174 None:intergenic
TGGATGCCAAAAGTCCCAAT+TGG 0.438994 4:+4919202 MsG0480018439.01.T01:CDS
TCCCGTGGAGCTGGTGGATG+AGG 0.442692 4:+4920520 MsG0480018439.01.T01:CDS
TTGATGGTTATTTATAAATG+AGG 0.450763 4:-4920216 None:intergenic
TCAAAAGGCTTAAAGAGTAA+AGG 0.456074 4:-4920548 None:intergenic
ACTACAAAACTTTCTGAAGA+AGG 0.456597 4:-4920152 None:intergenic
CTCCTCATCCACCAGCTCCA+CGG 0.458278 4:-4920522 None:intergenic
TCCTCATCCACCAGCTCCAC+GGG 0.464984 4:-4920521 None:intergenic
CTCTGAGGAGCTAATTGAGT+TGG 0.471934 4:+4919893 MsG0480018439.01.T01:CDS
CTCTCATAAAGTGGAACCAC+TGG 0.475451 4:-4919414 None:intergenic
TATAAAAGCTCCCGTGGAGC+TGG 0.481011 4:+4920511 MsG0480018439.01.T01:CDS
GACTTCACTAACTCCCAATT+GGG 0.486736 4:-4919216 None:intergenic
TAAGTAGCTTAGTCTCTAAA+GGG 0.493999 4:-4919350 None:intergenic
ACCAATATCTTGTGGCCGGA+TGG 0.495704 4:+4919483 MsG0480018439.01.T01:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 4:-4920563 None:intergenic
ATAGCTCAAACCCATCCCTT+TGG 0.499909 4:-4920777 None:intergenic
TATAAATGAGGAATGGTGAA+TGG 0.499920 4:-4920204 None:intergenic
GTGTCTAATAAGCCTTATGA+TGG 0.509211 4:+4919375 MsG0480018439.01.T01:CDS
ATGTCTTTACGAAGGTCTAA+AGG 0.510202 4:-4919297 None:intergenic
CTACTCTCATGAAGGCCAAA+GGG 0.512486 4:+4920762 MsG0480018439.01.T01:three_prime_UTR
TGTCTTCAATAACCTCAACT+TGG 0.513211 4:+4919182 MsG0480018439.01.T01:CDS
TTTGCTATCCGCACTTATTG+TGG 0.514546 4:+4920623 MsG0480018439.01.T01:CDS
TGACCAATATAGCCATCATA+AGG 0.516797 4:-4919387 None:intergenic
TAAGATATTTGCATCCTCAA+TGG 0.520151 4:-4919442 None:intergenic
GGATGCCAAAAGTCCCAATT+GGG 0.520983 4:+4919203 MsG0480018439.01.T01:CDS
TTTAGGTGTTGAAAAGTACA+TGG 0.523921 4:+4919947 MsG0480018439.01.T01:CDS
CTCAATTAGCTCCTCAGAGA+AGG 0.525827 4:-4919889 None:intergenic
AATAGGGAATAGGGAAGGAC+AGG 0.526793 4:+4919117 MsG0480018439.01.T01:five_prime_UTR
GCTGCATTCGCCATTTCACC+GGG 0.528558 4:+4920421 MsG0480018439.01.T01:CDS
ATGGCCATGCTCTCATAAAG+TGG 0.532560 4:-4919423 None:intergenic
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4:+4920458 MsG0480018439.01.T01:CDS
AAAAGCTCCCGTGGAGCTGG+TGG 0.535296 4:+4920514 MsG0480018439.01.T01:CDS
TATCACTCTCGAGAAGGCAT+GGG 0.536634 4:+4920593 MsG0480018439.01.T01:CDS
CTCATGAAGGCCAAAGGGAT+GGG 0.539788 4:+4920767 MsG0480018439.01.T01:three_prime_UTR
TCTCATGAAGGCCAAAGGGA+TGG 0.541383 4:+4920766 MsG0480018439.01.T01:three_prime_UTR
TTATCACTCTCGAGAAGGCA+TGG 0.542864 4:+4920592 MsG0480018439.01.T01:CDS
AATGCATGTGACCACGATCT+GGG 0.549149 4:-4920300 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 4:+4920026 MsG0480018439.01.T01:CDS
GGAAGGACAGGTGAAAATAT+GGG 0.551890 4:+4919129 MsG0480018439.01.T01:exon
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4:+4920086 MsG0480018439.01.T01:CDS
CATGACCAATATCTTGTGGC+CGG 0.564885 4:+4919479 MsG0480018439.01.T01:CDS
ATTACATCGGTGTTACGTCT+AGG 0.565772 4:+4920675 MsG0480018439.01.T01:three_prime_UTR
AGTGAAGTCCCAAGTCTACA+AGG 0.568762 4:+4919230 MsG0480018439.01.T01:CDS
TACTAATGCCTTGTAGACTT+GGG 0.570489 4:-4919238 None:intergenic
TATAGCTTATGTTATTAAGA+GGG 0.570560 4:+4920797 MsG0480018439.01.T01:three_prime_UTR
TTATGAGAGCATGGCCATTG+AGG 0.570943 4:+4919428 MsG0480018439.01.T01:CDS
GGTTCCACTTTATGAGAGCA+TGG 0.579350 4:+4919419 MsG0480018439.01.T01:CDS
CATATTGTACCAAAATCAAG+TGG 0.585592 4:+4920082 MsG0480018439.01.T01:CDS
AAGTATTACTACTCTCATGA+AGG 0.588140 4:+4920754 MsG0480018439.01.T01:three_prime_UTR
TTTCACCGGGTGATGATGAG+TGG 0.590400 4:+4920434 MsG0480018439.01.T01:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 4:-4920439 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4:-4920056 None:intergenic
CTCGAGAGTGATAATACTTG+AGG 0.595697 4:-4920583 None:intergenic
ATCACTCTCGAGAAGGCATG+GGG 0.600428 4:+4920594 MsG0480018439.01.T01:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4:+4920399 MsG0480018439.01.T01:intron
TGATGACCAAAGATGAACAA+TGG 0.605988 4:+4920117 MsG0480018439.01.T01:CDS
ACTACTCTCATGAAGGCCAA+AGG 0.608150 4:+4920761 MsG0480018439.01.T01:three_prime_UTR
TTCACCGGGTGATGATGAGT+GGG 0.609819 4:+4920435 MsG0480018439.01.T01:CDS
CAACACAATACTTCTTACAA+AGG 0.611240 4:-4920922 None:intergenic
AAGTATTATCACTCTCGAGA+AGG 0.611653 4:+4920587 MsG0480018439.01.T01:CDS
TTGTTCTCTAACCCCAATGG+AGG 0.612012 4:+4920482 MsG0480018439.01.T01:CDS
CTCAACCAATTACCGTCTCA+GGG 0.615222 4:+4919983 MsG0480018439.01.T01:CDS
GGTGATGATGAGTGGGAATG+AGG 0.615235 4:+4920442 MsG0480018439.01.T01:CDS
GGGTTGTTCTCTAACCCCAA+TGG 0.618714 4:+4920479 MsG0480018439.01.T01:CDS
TGTACTTCATAACCCTGAGA+CGG 0.619668 4:-4919995 None:intergenic
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4:-4920049 None:intergenic
TGTAATTTGAGCAGTAAGTG+TGG 0.624704 4:-4920658 None:intergenic
GGTTATTTATAAATGAGGAA+TGG 0.627036 4:-4920211 None:intergenic
GTAAATTGTCTAGAGAACAC+TGG 0.627256 4:-4920848 None:intergenic
CATGAGAGTAGTAATACTTG+AGG 0.629628 4:-4920750 None:intergenic
AAAGCATGACCAATATCTTG+TGG 0.630527 4:+4919475 MsG0480018439.01.T01:CDS
ATCAAAATAGGGAATAGGGA+AGG 0.636356 4:+4919112 MsG0480018439.01.T01:five_prime_UTR
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4:+4919999 MsG0480018439.01.T01:CDS
AAGCAAATATGTCTTTACGA+AGG 0.638765 4:-4919305 None:intergenic
GTACATTATAAAAGCTCCCG+TGG 0.641395 4:+4920505 MsG0480018439.01.T01:CDS
AATTAGTGGAAGCTTTGGAG+TGG 0.646700 4:-4919160 None:intergenic
TTATAATGTACCCTCCATTG+GGG 0.646898 4:-4920493 None:intergenic
CTCAAACACCACAATAAGTG+CGG 0.648865 4:-4920631 None:intergenic
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4:+4920447 MsG0480018439.01.T01:CDS
TGATGTCGTAGCCCAGATCG+TGG 0.666479 4:+4920289 MsG0480018439.01.T01:CDS
TGTTCTCTAACCCCAATGGA+GGG 0.668675 4:+4920483 MsG0480018439.01.T01:CDS
CTATATTGGTCAATATCCAG+TGG 0.672212 4:+4919398 MsG0480018439.01.T01:CDS
AACCATACATTCCTTCTCTG+AGG 0.672793 4:+4919878 MsG0480018439.01.T01:CDS
GTAGCTTAGTCTCTAAAGGG+AGG 0.679630 4:-4919347 None:intergenic
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4:+4920459 MsG0480018439.01.T01:CDS
ACTTACTGCTCAAATTACAT+CGG 0.686134 4:+4920662 MsG0480018439.01.T01:three_prime_UTR
AGGTGTTGAAAAGTACATGG+AGG 0.723372 4:+4919950 MsG0480018439.01.T01:CDS
TCACTCTCGAGAAGGCATGG+GGG 0.750694 4:+4920595 MsG0480018439.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAATCAAATTAATA+AGG - Chr4:4919851-4919870 None:intergenic 10.0%
!! AAAGAAAATCAAATTAATAA+GGG - Chr4:4919850-4919869 None:intergenic 10.0%
!!! TTTAAAATATTAACAACTTT+AGG - Chr4:4919567-4919586 None:intergenic 10.0%
!! ATTTATAAATAACCATCAAT+TGG + Chr4:4920220-4920239 MsG0480018439.01.T01:CDS 15.0%
!! CATAATAATAAATTTCAACA+TGG - Chr4:4920333-4920352 None:intergenic 15.0%
!! CATGTTGAAATTTATTATTA+TGG + Chr4:4920331-4920350 MsG0480018439.01.T01:intron 15.0%
!! TATAGCTTATGTTATTAAGA+GGG + Chr4:4920797-4920816 MsG0480018439.01.T01:three_prime_UTR 20.0%
!! TATCCTATTTATCTTATCAT+TGG + Chr4:4919802-4919821 MsG0480018439.01.T01:intron 20.0%
!! TTATTAACAAGTTTCATCAT+TGG + Chr4:4919666-4919685 MsG0480018439.01.T01:intron 20.0%
!!! AATTATTAGGAAGATGATTT+TGG + Chr4:4919920-4919939 MsG0480018439.01.T01:CDS 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG - Chr4:4920873-4920892 None:intergenic 20.0%
!!! ACACACAACATATATATTTT+TGG - Chr4:4920827-4920846 None:intergenic 20.0%
!!! TTGATGGTTATTTATAAATG+AGG - Chr4:4920219-4920238 None:intergenic 20.0%
! CATTGACCTTAATCAAAATA+GGG + Chr4:4919101-4919120 MsG0480018439.01.T01:five_prime_UTR 25.0%
! CTATAGCTTATGTTATTAAG+AGG + Chr4:4920796-4920815 MsG0480018439.01.T01:three_prime_UTR 25.0%
! CTTAATCAAAATAGGGAATA+GGG + Chr4:4919108-4919127 MsG0480018439.01.T01:five_prime_UTR 25.0%
! GAAACTCGATATATTGTTAA+CGG - Chr4:4919746-4919765 None:intergenic 25.0%
! GGTTATTTATAAATGAGGAA+TGG - Chr4:4920214-4920233 None:intergenic 25.0%
! GTTCCAATGATAAGATAAAT+AGG - Chr4:4919808-4919827 None:intergenic 25.0%
!! ATTACTCATGTAAATTTTGC+AGG + Chr4:4920382-4920401 MsG0480018439.01.T01:intron 25.0%
!! TATATGTTGTTTGCATTCAT+TGG + Chr4:4920893-4920912 MsG0480018439.01.T01:three_prime_UTR 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG + Chr4:4919930-4919949 MsG0480018439.01.T01:CDS 25.0%
!!! CTAAAATTTTTGTTTCCATC+CGG - Chr4:4919501-4919520 None:intergenic 25.0%
!!! TTGAGTTGGATCAAATTATT+AGG + Chr4:4919907-4919926 MsG0480018439.01.T01:CDS 25.0%
AAGCAAATATGTCTTTACGA+AGG - Chr4:4919308-4919327 None:intergenic 30.0%
AAGTATTACTACTCTCATGA+AGG + Chr4:4920754-4920773 MsG0480018439.01.T01:three_prime_UTR 30.0%
ACTTACTGCTCAAATTACAT+CGG + Chr4:4920662-4920681 MsG0480018439.01.T01:three_prime_UTR 30.0%
AGGTTATTGAAGACAATTAG+TGG - Chr4:4919177-4919196 None:intergenic 30.0%
ATATCGAGTTTCTTCAAAGT+GGG + Chr4:4919754-4919773 MsG0480018439.01.T01:intron 30.0%
CAAAAGGCTTAAAGAGTAAA+GGG - Chr4:4920550-4920569 None:intergenic 30.0%
CAACACAATACTTCTTACAA+AGG - Chr4:4920925-4920944 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG + Chr4:4920082-4920101 MsG0480018439.01.T01:CDS 30.0%
CCTTAATCAAAATAGGGAAT+AGG + Chr4:4919107-4919126 MsG0480018439.01.T01:five_prime_UTR 30.0%
CTTCATTAGTTACCAATTGA+TGG - Chr4:4920235-4920254 None:intergenic 30.0%
TAAGATATTTGCATCCTCAA+TGG - Chr4:4919445-4919464 None:intergenic 30.0%
TAAGTAGCTTAGTCTCTAAA+GGG - Chr4:4919353-4919372 None:intergenic 30.0%
TATAAATGAGGAATGGTGAA+TGG - Chr4:4920207-4920226 None:intergenic 30.0%
TATATCGAGTTTCTTCAAAG+TGG + Chr4:4919753-4919772 MsG0480018439.01.T01:intron 30.0%
TCAAAAGGCTTAAAGAGTAA+AGG - Chr4:4920551-4920570 None:intergenic 30.0%
TTAAGTAGCTTAGTCTCTAA+AGG - Chr4:4919354-4919373 None:intergenic 30.0%
TTTATAATGTACCCTCCATT+GGG - Chr4:4920497-4920516 None:intergenic 30.0%
! ACTACAAAACTTTCTGAAGA+AGG - Chr4:4920155-4920174 None:intergenic 30.0%
! CATCAATTGGTAACTAATGA+AGG + Chr4:4920233-4920252 MsG0480018439.01.T01:CDS 30.0%
! CGGATGGAAACAAAAATTTT+AGG + Chr4:4919499-4919518 MsG0480018439.01.T01:CDS 30.0%
! GCATTGACCTTAATCAAAAT+AGG + Chr4:4919100-4919119 MsG0480018439.01.T01:five_prime_UTR 30.0%
! TTTTATAATGTACCCTCCAT+TGG - Chr4:4920498-4920517 None:intergenic 30.0%
!! CACTTGATTTTGGTACAATA+TGG - Chr4:4920084-4920103 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG + Chr4:4919947-4919966 MsG0480018439.01.T01:CDS 30.0%
!!! CCTATTCCCTATTTTGATTA+AGG - Chr4:4919110-4919129 None:intergenic 30.0%
AAAGCATGACCAATATCTTG+TGG + Chr4:4919475-4919494 MsG0480018439.01.T01:CDS 35.0%
AAGACAATTAGTGGAAGCTT+TGG - Chr4:4919168-4919187 None:intergenic 35.0%
AAGTATTATCACTCTCGAGA+AGG + Chr4:4920587-4920606 MsG0480018439.01.T01:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG - Chr4:4920566-4920585 None:intergenic 35.0%
ATCAAAATAGGGAATAGGGA+AGG + Chr4:4919112-4919131 MsG0480018439.01.T01:five_prime_UTR 35.0%
ATGTCTTTACGAAGGTCTAA+AGG - Chr4:4919300-4919319 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG + Chr4:4920026-4920045 MsG0480018439.01.T01:CDS 35.0%
CATGAGAGTAGTAATACTTG+AGG - Chr4:4920753-4920772 None:intergenic 35.0%
CTATATTGGTCAATATCCAG+TGG + Chr4:4919398-4919417 MsG0480018439.01.T01:CDS 35.0%
GCTTATCCATTGTTCATCTT+TGG - Chr4:4920126-4920145 None:intergenic 35.0%
GTAAATTGTCTAGAGAACAC+TGG - Chr4:4920851-4920870 None:intergenic 35.0%
TACTAATGCCTTGTAGACTT+GGG - Chr4:4919241-4919260 None:intergenic 35.0%
TGACCAATATAGCCATCATA+AGG - Chr4:4919390-4919409 None:intergenic 35.0%
TGATGACCAAAGATGAACAA+TGG + Chr4:4920117-4920136 MsG0480018439.01.T01:CDS 35.0%
TGTAATTTGAGCAGTAAGTG+TGG - Chr4:4920661-4920680 None:intergenic 35.0%
TGTCTTCAATAACCTCAACT+TGG + Chr4:4919182-4919201 MsG0480018439.01.T01:CDS 35.0%
TTATAATGTACCCTCCATTG+GGG - Chr4:4920496-4920515 None:intergenic 35.0%
TTGTACCAAAATCAAGTGGA+AGG + Chr4:4920086-4920105 MsG0480018439.01.T01:CDS 35.0%
! AAGCCTTATGATGGCTATAT+TGG + Chr4:4919384-4919403 MsG0480018439.01.T01:CDS 35.0%
! CTAAACCTTCCACTTGATTT+TGG - Chr4:4920094-4920113 None:intergenic 35.0%
! GTGTCTAATAAGCCTTATGA+TGG + Chr4:4919375-4919394 MsG0480018439.01.T01:CDS 35.0%
! TACAAGGCATTAGTAGAGTA+TGG + Chr4:4919246-4919265 MsG0480018439.01.T01:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG + Chr4:4920387-4920406 MsG0480018439.01.T01:intron 35.0%
!! GAAAGTTTTGTAGTTGTGCT+TGG + Chr4:4920161-4920180 MsG0480018439.01.T01:CDS 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG - Chr4:4920026-4920045 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG - Chr4:4920025-4920044 None:intergenic 35.0%
AACCATACATTCCTTCTCTG+AGG + Chr4:4919878-4919897 MsG0480018439.01.T01:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG - Chr4:4920059-4920078 None:intergenic 40.0%
CTACTAATGCCTTGTAGACT+TGG - Chr4:4919242-4919261 None:intergenic 40.0%
CTCAAACACCACAATAAGTG+CGG - Chr4:4920634-4920653 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG + Chr4:4919999-4920018 MsG0480018439.01.T01:CDS 40.0%
CTCGAGAGTGATAATACTTG+AGG - Chr4:4920586-4920605 None:intergenic 40.0%
GACTTCACTAACTCCCAATT+GGG - Chr4:4919219-4919238 None:intergenic 40.0%
GGAAGGACAGGTGAAAATAT+GGG + Chr4:4919129-4919148 MsG0480018439.01.T01:exon 40.0%
GTACATTATAAAAGCTCCCG+TGG + Chr4:4920505-4920524 MsG0480018439.01.T01:CDS 40.0%
TGTACTTCATAACCCTGAGA+CGG - Chr4:4919998-4920017 None:intergenic 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG + Chr4:4920395-4920414 MsG0480018439.01.T01:intron 40.0%
! TAACTCCCAATTGGGACTTT+TGG - Chr4:4919211-4919230 None:intergenic 40.0%
! TTTGCTATCCGCACTTATTG+TGG + Chr4:4920623-4920642 MsG0480018439.01.T01:CDS 40.0%
!! AATTAGTGGAAGCTTTGGAG+TGG - Chr4:4919163-4919182 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG + Chr4:4919950-4919969 MsG0480018439.01.T01:CDS 40.0%
!! ATTACATCGGTGTTACGTCT+AGG + Chr4:4920675-4920694 MsG0480018439.01.T01:three_prime_UTR 40.0%
AAATGCATGTGACCACGATC+TGG - Chr4:4920304-4920323 None:intergenic 45.0%
AATAGGGAATAGGGAAGGAC+AGG + Chr4:4919117-4919136 MsG0480018439.01.T01:five_prime_UTR 45.0%
AATGCATGTGACCACGATCT+GGG - Chr4:4920303-4920322 None:intergenic 45.0%
ACTACTCTCATGAAGGCCAA+AGG + Chr4:4920761-4920780 MsG0480018439.01.T01:three_prime_UTR 45.0%
ACTCAACCAATTACCGTCTC+AGG + Chr4:4919982-4920001 MsG0480018439.01.T01:CDS 45.0%
AGTGAAGTCCCAAGTCTACA+AGG + Chr4:4919230-4919249 MsG0480018439.01.T01:CDS 45.0%
ATAGCTCAAACCCATCCCTT+TGG - Chr4:4920780-4920799 None:intergenic 45.0%
ATGGCCATGCTCTCATAAAG+TGG - Chr4:4919426-4919445 None:intergenic 45.0%
CATAACCCTGAGACGGTAAT+TGG - Chr4:4919991-4920010 None:intergenic 45.0%
CATGACCAATATCTTGTGGC+CGG + Chr4:4919479-4919498 MsG0480018439.01.T01:CDS 45.0%
CTACTCTCATGAAGGCCAAA+GGG + Chr4:4920762-4920781 MsG0480018439.01.T01:three_prime_UTR 45.0%
CTCAACCAATTACCGTCTCA+GGG + Chr4:4919983-4920002 MsG0480018439.01.T01:CDS 45.0%
CTCAATTAGCTCCTCAGAGA+AGG - Chr4:4919892-4919911 None:intergenic 45.0%
CTCCTCAGAGAAGGAATGTA+TGG - Chr4:4919883-4919902 None:intergenic 45.0%
CTCTCATAAAGTGGAACCAC+TGG - Chr4:4919417-4919436 None:intergenic 45.0%
GGACTTCACTAACTCCCAAT+TGG - Chr4:4919220-4919239 None:intergenic 45.0%
GGATGCCAAAAGTCCCAATT+GGG + Chr4:4919203-4919222 MsG0480018439.01.T01:CDS 45.0%
GGGAAGGACAGGTGAAAATA+TGG + Chr4:4919128-4919147 MsG0480018439.01.T01:exon 45.0%
GGTTCCACTTTATGAGAGCA+TGG + Chr4:4919419-4919438 MsG0480018439.01.T01:CDS 45.0%
TCGAGTTTCTTCAAAGTGGG+TGG + Chr4:4919757-4919776 MsG0480018439.01.T01:intron 45.0%
TGGATGCCAAAAGTCCCAAT+TGG + Chr4:4919202-4919221 MsG0480018439.01.T01:CDS 45.0%
TGTTCTCTAACCCCAATGGA+GGG + Chr4:4920483-4920502 MsG0480018439.01.T01:CDS 45.0%
TTATCACTCTCGAGAAGGCA+TGG + Chr4:4920592-4920611 MsG0480018439.01.T01:CDS 45.0%
TTGTTCTCTAACCCCAATGG+AGG + Chr4:4920482-4920501 MsG0480018439.01.T01:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG + Chr4:4920458-4920477 MsG0480018439.01.T01:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG + Chr4:4920459-4920478 MsG0480018439.01.T01:CDS 45.0%
! CTCTGAGGAGCTAATTGAGT+TGG + Chr4:4919893-4919912 MsG0480018439.01.T01:CDS 45.0%
! GACTTTTGGCATCCAAGTTG+AGG - Chr4:4919197-4919216 None:intergenic 45.0%
! GTAGCTTAGTCTCTAAAGGG+AGG - Chr4:4919350-4919369 None:intergenic 45.0%
! TATCACTCTCGAGAAGGCAT+GGG + Chr4:4920593-4920612 MsG0480018439.01.T01:CDS 45.0%
! TTATGAGAGCATGGCCATTG+AGG + Chr4:4919428-4919447 MsG0480018439.01.T01:CDS 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG + Chr4:4920396-4920415 MsG0480018439.01.T01:intron 45.0%
ACCAATATCTTGTGGCCGGA+TGG + Chr4:4919483-4919502 MsG0480018439.01.T01:CDS 50.0%
CATTCCCACTCATCATCACC+CGG - Chr4:4920442-4920461 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG - Chr4:4920434-4920453 None:intergenic 50.0%
CTCATGAAGGCCAAAGGGAT+GGG + Chr4:4920767-4920786 MsG0480018439.01.T01:three_prime_UTR 50.0%
GGGTTGTTCTCTAACCCCAA+TGG + Chr4:4920479-4920498 MsG0480018439.01.T01:CDS 50.0%
TATAAAAGCTCCCGTGGAGC+TGG + Chr4:4920511-4920530 MsG0480018439.01.T01:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG - Chr4:4919487-4919506 None:intergenic 50.0%
TCTCATGAAGGCCAAAGGGA+TGG + Chr4:4920766-4920785 MsG0480018439.01.T01:three_prime_UTR 50.0%
TGATGAGTGGGAATGAGGCA+AGG + Chr4:4920447-4920466 MsG0480018439.01.T01:CDS 50.0%
! ATCACTCTCGAGAAGGCATG+GGG + Chr4:4920594-4920613 MsG0480018439.01.T01:CDS 50.0%
! GGTGATGATGAGTGGGAATG+AGG + Chr4:4920442-4920461 MsG0480018439.01.T01:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG - Chr4:4920052-4920071 None:intergenic 50.0%
! TTCACCGGGTGATGATGAGT+GGG + Chr4:4920435-4920454 MsG0480018439.01.T01:CDS 50.0%
! TTTCACCGGGTGATGATGAG+TGG + Chr4:4920434-4920453 MsG0480018439.01.T01:CDS 50.0%
GCTGCATTCGCCATTTCACC+GGG + Chr4:4920421-4920440 MsG0480018439.01.T01:CDS 55.0%
GGCTGCATTCGCCATTTCAC+CGG + Chr4:4920420-4920439 MsG0480018439.01.T01:CDS 55.0%
TGATGTCGTAGCCCAGATCG+TGG + Chr4:4920289-4920308 MsG0480018439.01.T01:CDS 55.0%
! TCACTCTCGAGAAGGCATGG+GGG + Chr4:4920595-4920614 MsG0480018439.01.T01:CDS 55.0%
AAAAGCTCCCGTGGAGCTGG+TGG + Chr4:4920514-4920533 MsG0480018439.01.T01:CDS 60.0%
CTCCTCATCCACCAGCTCCA+CGG - Chr4:4920525-4920544 None:intergenic 60.0%
TCCTCATCCACCAGCTCCAC+GGG - Chr4:4920524-4920543 None:intergenic 60.0%
TGCAGGCATGGTCAAACGGG+AGG + Chr4:4920399-4920418 MsG0480018439.01.T01:intron 60.0%
! CTCGAGAAGGCATGGGGGCT+CGG + Chr4:4920600-4920619 MsG0480018439.01.T01:CDS 65.0%
! TCCCGTGGAGCTGGTGGATG+AGG + Chr4:4920520-4920539 MsG0480018439.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 4919092 4920976 4919092 ID=MsG0480018439.01;Name=MsG0480018439.01
Chr4 mRNA 4919092 4920976 4919092 ID=MsG0480018439.01.T01;Parent=MsG0480018439.01;Name=MsG0480018439.01.T01;_AED=0.49;_eAED=0.50;_QI=55|0.5|0.66|1|1|1|3|324|352
Chr4 exon 4919092 4919520 4919092 ID=MsG0480018439.01.T01:exon:1313;Parent=MsG0480018439.01.T01
Chr4 exon 4919875 4920310 4919875 ID=MsG0480018439.01.T01:exon:1314;Parent=MsG0480018439.01.T01
Chr4 exon 4920404 4920976 4920404 ID=MsG0480018439.01.T01:exon:1315;Parent=MsG0480018439.01.T01
Chr4 five_prime_UTR 4919092 4919146 4919092 ID=MsG0480018439.01.T01:five_prime_utr;Parent=MsG0480018439.01.T01
Chr4 CDS 4919147 4919520 4919147 ID=MsG0480018439.01.T01:cds;Parent=MsG0480018439.01.T01
Chr4 CDS 4919875 4920310 4919875 ID=MsG0480018439.01.T01:cds;Parent=MsG0480018439.01.T01
Chr4 CDS 4920404 4920652 4920404 ID=MsG0480018439.01.T01:cds;Parent=MsG0480018439.01.T01
Chr4 three_prime_UTR 4920653 4920976 4920653 ID=MsG0480018439.01.T01:three_prime_utr;Parent=MsG0480018439.01.T01
Gene Sequence

>MsG0480018439.01.T01

ATGGGCTCAGAAACCACTCCAAAGCTTCCACTAATTGTCTTCAATAACCTCAACTTGGATGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTACAAGGCATTAGTAGAGTATGGTTGCTTTGAAGCAATTTTTGATAAAGTTCCTTTAGACCTTCGTAAAGACATATTTGCTTCAATAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTACTTAATGTGTCTAATAAGCCTTATGATGGCTATATTGGTCAATATCCAGTGGTTCCACTTTATGAGAGCATGGCCATTGAGGATGCAAATATCTTAGAGAAAGTAAAAAGCATGACCAATATCTTGTGGCCGGATGGAAACAAAAATTTTAGTGAAACCATACATTCCTTCTCTGAGGAGCTAATTGAGTTGGATCAAATTATTAGGAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCGTCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGAACAATGGATAAGCTACAAGCCTTCTTCAGAAAGTTTTGTAGTTGTGCTTGGTGATTCTATGCATGTAAATTCCATTCACCATTCCTCATTTATAAATAACCATCAATTGGTAACTAATGAAGGTTTAAATCAGTGTCGTGATCGCATAAAAATCTCTGATGTCGTAGCCCAGATCGTGGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTAACCCCAATGGAGGGTACATTATAAAAGCTCCCGTGGAGCTGGTGGATGAGGAGCACCCTTTACTCTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTATCACTCTCGAGAAGGCATGGGGGCTCGGTTTGCTATCCGCACTTATTGTGGTGTTTGA

Protein sequence

>MsG0480018439.01.T01

MGSETTPKLPLIVFNNLNLDAKSPNWELVKSQVYKALVEYGCFEAIFDKVPLDLRKDIFASIEELFDLPLETKLLNVSNKPYDGYIGQYPVVPLYESMAIEDANILEKVKSMTNILWPDGNKNFSETIHSFSEELIELDQIIRKMILESLGVEKYMEEHMNSTNYRLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDEQWISYKPSSESFVVVLGDSMHVNSIHHSSFINNHQLVTNEGLNQCRDRIKISDVVAQIVAWSNGRLHSPFHRVMMSGNEARYSAGLFSNPNGGYIIKAPVELVDEEHPLLFKPFDYAEFLKYYHSREGMGARFAIRTYCGV*