AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018072.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018072.01.T01 MTR_3g118430 95.761 401 4 2 1 396 1 393 0.0 778
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018072.01.T01 AT4G35250 93.353 331 22 0 66 396 65 395 0.0 650

Find 118 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCAATGCAGGGTCTTAT+TGG 0.228861 3:-104002005 MsG0380018072.01.T01:intron
CTCTAATGTAATTATATCTT+TGG 0.230175 3:+104001003 None:intergenic
GAGAACTTCCTCCGTGATTC+TGG 0.246351 3:-104002134 MsG0380018072.01.T01:CDS
AGCTGACTTCCTTCGTGATT+GGG 0.252587 3:-104002405 MsG0380018072.01.T01:CDS
CACTTCTCACTATGTACATT+TGG 0.269798 3:+104000695 None:intergenic
CAGCTGACTTCCTTCGTGAT+TGG 0.278974 3:-104002406 MsG0380018072.01.T01:CDS
AGTATCCATGTAAGCGATTC+TGG 0.290196 3:+104001926 None:intergenic
GGTAAACTTCTTACATTTGC+TGG 0.304653 3:-104001757 MsG0380018072.01.T01:CDS
AGTATACTTGTTGGCCTAAC+AGG 0.305613 3:+104002527 None:intergenic
TGGCTGTTGGTAACCTCATC+AGG 0.328407 3:+104002741 None:intergenic
TATAAATTAACCAATGTGTT+TGG 0.334141 3:+104000759 None:intergenic
GTTGGAGCCACGGGGACTTT+GGG 0.335711 3:-104002500 MsG0380018072.01.T01:CDS
TTATTCTTAAATACGCTTGC+CGG 0.343333 3:-104000844 MsG0380018072.01.T01:three_prime_UTR
CTTTGGGAAGGCAGATTGTT+CGG 0.350602 3:-104002484 MsG0380018072.01.T01:CDS
CAGGATGTTTGTCGCAGTTA+TGG 0.353588 3:+104002189 None:intergenic
AGGAAGAAGGATTATTAGAG+TGG 0.354956 3:-104002627 MsG0380018072.01.T01:CDS
TACATTAGAGAAGTATTTGC+AGG 0.361917 3:-104000990 MsG0380018072.01.T01:CDS
ACTATTCCTGCTACATTAGT+TGG 0.362432 3:-104002344 MsG0380018072.01.T01:CDS
TTCTTACGTGGGCTTACAAT+TGG 0.375224 3:-104000803 MsG0380018072.01.T01:three_prime_UTR
GGTTGGAGCCACGGGGACTT+TGG 0.381360 3:-104002501 MsG0380018072.01.T01:CDS
GCCTATCAAAACAGTTGATT+GGG 0.393639 3:-104002279 MsG0380018072.01.T01:CDS
ACATTGTGTGAGAGGCTTGC+GGG 0.395591 3:-104001703 MsG0380018072.01.T01:CDS
TCAGAGAGGGCGGTGAATCT+TGG 0.400193 3:-104002560 MsG0380018072.01.T01:CDS
AGCCTATCAAAACAGTTGAT+TGG 0.402139 3:-104002280 MsG0380018072.01.T01:CDS
CACACAATGTAATCACCTCT+TGG 0.411787 3:+104001716 None:intergenic
ACTGTTATTGATTGCGCCAC+TGG 0.416466 3:-104002314 MsG0380018072.01.T01:CDS
AGGATACGACGTCCGGTGTC+TGG 0.418347 3:-104002447 MsG0380018072.01.T01:CDS
ACTTCTCACTATGTACATTT+GGG 0.418749 3:+104000696 None:intergenic
ATCTCCATGAGTGGGACCTC+AGG 0.428640 3:+104002170 None:intergenic
ATACTTGTGGTTGGAGCCAC+GGG 0.432518 3:-104002509 MsG0380018072.01.T01:CDS
CACATTGTCATCCGTTTATG+TGG 0.441513 3:-104002104 MsG0380018072.01.T01:CDS
CGAGGATAGGAACAGCATAT+TGG 0.442348 3:+104001982 None:intergenic
AAATATCTGATTGTTTCGAC+TGG 0.443973 3:+104000924 None:intergenic
CTTGCATGAAACCACATAAA+CGG 0.459989 3:+104002093 None:intergenic
CTGTAGTTACATTAGCATCT+TGG 0.467915 3:+104001680 None:intergenic
TTGGACCAGGGACACCTGTT+AGG 0.469779 3:-104002541 MsG0380018072.01.T01:CDS
TGCATACGAGGTAATGTTGT+GGG 0.476275 3:-104000878 MsG0380018072.01.T01:three_prime_UTR
GTTGGCCTAACAGGTGTCCC+TGG 0.478236 3:+104002536 None:intergenic
TGAGGACTGGGATAAAGAAC+AGG 0.486085 3:+104002680 None:intergenic
CATGTAAGCGATTCTGGTGG+GGG 0.487749 3:+104001932 None:intergenic
ATTCAATGTGCTAAAGCAAT+GGG 0.487829 3:-104002239 MsG0380018072.01.T01:CDS
AAGTCAGCTGGAGCAGGCCT+CGG 0.491663 3:+104002419 None:intergenic
CTGACGAGTGAGTCTTAAAA+CGG 0.500828 3:+104001648 None:intergenic
GAACATATTGAAGAAGTTGA+AGG 0.506295 3:-104000957 MsG0380018072.01.T01:CDS
CGAAGGAAGTCAGCTGGAGC+AGG 0.509309 3:+104002413 None:intergenic
TTGCAAAACTCAACAAAATG+AGG 0.512716 3:+104002662 None:intergenic
TATTCAATGTGCTAAAGCAA+TGG 0.515599 3:-104002240 MsG0380018072.01.T01:CDS
CCCCACCAGAATCGCTTACA+TGG 0.515621 3:-104001931 MsG0380018072.01.T01:CDS
ACGACGTCCGGTGTCTGGTA+AGG 0.516950 3:-104002442 MsG0380018072.01.T01:CDS
CCATGTAAGCGATTCTGGTG+GGG 0.516968 3:+104001931 None:intergenic
GCAGATTGTTCGGAGGGCAC+TGG 0.517013 3:-104002474 MsG0380018072.01.T01:CDS
TCCGGTGTCTGGTAAGGCCG+AGG 0.517171 3:-104002436 MsG0380018072.01.T01:CDS
AAACTCAACAAAATGAGGAC+TGG 0.519785 3:+104002667 None:intergenic
GTCCTCCTCACCACCCTACC+AGG 0.521131 3:+104002716 None:intergenic
TGAACTCCAACTAATGTAGC+AGG 0.522361 3:+104002338 None:intergenic
GGAAGAAGGATTATTAGAGT+GGG 0.524254 3:-104002626 MsG0380018072.01.T01:CDS
CCTCACCACCCTACCAGGTG+TGG 0.525876 3:+104002721 None:intergenic
CCAACCACAAGTATACTTGT+TGG 0.527488 3:+104002518 None:intergenic
AAATGATGTTGCTGACAGAT+TGG 0.529217 3:-104001602 MsG0380018072.01.T01:CDS
GCTGACTTCCTTCGTGATTG+GGG 0.529696 3:-104002404 MsG0380018072.01.T01:CDS
GAGCCACGGGGACTTTGGGA+AGG 0.531810 3:-104002496 MsG0380018072.01.T01:CDS
ACACAATGTAATCACCTCTT+GGG 0.536741 3:+104001717 None:intergenic
ATGTTTGTCGCAGTTATGGA+TGG 0.537280 3:+104002193 None:intergenic
ACATCCTGAGGTCCCACTCA+TGG 0.537298 3:-104002174 MsG0380018072.01.T01:CDS
CAATCACGAAGGAAGTCAGC+TGG 0.537462 3:+104002407 None:intergenic
TATACTTGTGGTTGGAGCCA+CGG 0.537842 3:-104002510 MsG0380018072.01.T01:CDS
AGGTTGTATGTCTCCGCCAT+TGG 0.538477 3:+104001040 None:intergenic
AATGTAGCAGGAATAGTCTC+AGG 0.539300 3:+104002350 None:intergenic
CCACACCTGGTAGGGTGGTG+AGG 0.551319 3:-104002721 MsG0380018072.01.T01:CDS
TCCATGTAAGCGATTCTGGT+GGG 0.555397 3:+104001930 None:intergenic
AACTCAACAAAATGAGGACT+GGG 0.556955 3:+104002668 None:intergenic
GTGAGTCTTAAAACGGAGAC+AGG 0.566202 3:+104001655 None:intergenic
AGGCTCTTCAGGACGGCCAG+TGG 0.567494 3:+104002298 None:intergenic
GCGGAGACATACAACCTACT+TGG 0.567860 3:-104001034 MsG0380018072.01.T01:CDS
ACCAACAGCCACACCTGGTA+GGG 0.570641 3:-104002729 MsG0380018072.01.T01:CDS
AATATCTGATTGTTTCGACT+GGG 0.571429 3:+104000925 None:intergenic
TACATTGTGTGAGAGGCTTG+CGG 0.572162 3:-104001704 MsG0380018072.01.T01:CDS
ACCCTACCAGGTGTGGCTGT+TGG 0.574945 3:+104002728 None:intergenic
AATCGCTTACATGGATACTC+AGG 0.576431 3:-104001922 MsG0380018072.01.T01:intron
CATTTGCTGGTCCTCGTGCG+TGG 0.576997 3:-104001744 MsG0380018072.01.T01:CDS
GGGAAGGCAGATTGTTCGGA+GGG 0.578906 3:-104002480 MsG0380018072.01.T01:CDS
AGGGCGGTGAATCTTGGACC+AGG 0.579063 3:-104002554 MsG0380018072.01.T01:CDS
AGGTGATTACATTGTGTGAG+AGG 0.579608 3:-104001711 MsG0380018072.01.T01:CDS
AAGGTGGAAGAAGAGGAAGA+AGG 0.582412 3:-104002640 MsG0380018072.01.T01:CDS
CTTTGGTATCGACACCAAGT+AGG 0.582966 3:+104001020 None:intergenic
TGGACGAAGGATACGACGTC+CGG 0.585255 3:-104002454 MsG0380018072.01.T01:CDS
TGAAAATGGCGACCCTGATG+AGG 0.599647 3:-104002754 MsG0380018072.01.T01:CDS
ATCAAAACAGTTGATTGGGA+AGG 0.599943 3:-104002275 MsG0380018072.01.T01:CDS
AGGTTACCAACAGCCACACC+TGG 0.599991 3:-104002734 MsG0380018072.01.T01:CDS
GGTGGTGAGGAGGACGAGAG+AGG 0.604065 3:-104002708 MsG0380018072.01.T01:CDS
CCAACAAGTATACTTGTGGT+TGG 0.608034 3:-104002518 MsG0380018072.01.T01:CDS
TTGCATACGAGGTAATGTTG+TGG 0.612997 3:-104000879 MsG0380018072.01.T01:three_prime_UTR
AACAGCCACACCTGGTAGGG+TGG 0.616669 3:-104002726 MsG0380018072.01.T01:CDS
TTGTATTCATCCAAACACAT+TGG 0.619267 3:-104000769 MsG0380018072.01.T01:three_prime_UTR
TACCAACAGCCACACCTGGT+AGG 0.624838 3:-104002730 MsG0380018072.01.T01:CDS
ATCCATGTAAGCGATTCTGG+TGG 0.627734 3:+104001929 None:intergenic
CAATACTTGATCTCCATGAG+TGG 0.630169 3:+104002161 None:intergenic
TGGGAAGGCAGATTGTTCGG+AGG 0.630372 3:-104002481 MsG0380018072.01.T01:CDS
GTTCGGAGGGCACTGGACGA+AGG 0.631129 3:-104002467 MsG0380018072.01.T01:CDS
TGTGATTGAGTCCAGAATCA+CGG 0.632628 3:+104002123 None:intergenic
TAGGCCAACAAGTATACTTG+TGG 0.636061 3:-104002522 MsG0380018072.01.T01:CDS
GGCTGTTGGTAACCTCATCA+GGG 0.639067 3:+104002742 None:intergenic
CACCTGGTAGGGTGGTGAGG+AGG 0.643631 3:-104002718 MsG0380018072.01.T01:CDS
ATGATTTGTAATTGCATACG+AGG 0.645440 3:-104000890 MsG0380018072.01.T01:three_prime_UTR
GCCTCGGCCTTACCAGACAC+CGG 0.648299 3:+104002435 None:intergenic
TAGCAATAGCAATTCAGAGA+GGG 0.651939 3:-104002573 MsG0380018072.01.T01:CDS
AATACTTGATCTCCATGAGT+GGG 0.653716 3:+104002162 None:intergenic
GGGCGGTGAATCTTGGACCA+GGG 0.653844 3:-104002553 MsG0380018072.01.T01:CDS
CAATAGCAATTCAGAGAGGG+CGG 0.659474 3:-104002570 MsG0380018072.01.T01:CDS
CTGCCTTCCCAAAGTCCCCG+TGG 0.669955 3:+104002493 None:intergenic
TCGTGCGTGGACTACCCAAG+AGG 0.692160 3:-104001731 MsG0380018072.01.T01:CDS
TAACTGCGACAAACATCCTG+AGG 0.699487 3:-104002186 MsG0380018072.01.T01:CDS
GTATTGGATAGAATGAACGA+AGG 0.702781 3:-104002823 None:intergenic
TCTTGGGTAGTCCACGCACG+AGG 0.707865 3:+104001733 None:intergenic
CAGTTGCTCCCCAATCACGA+AGG 0.720142 3:+104002396 None:intergenic
ATAGCAATAGCAATTCAGAG+AGG 0.747554 3:-104002574 MsG0380018072.01.T01:CDS
TACTTGTGGTTGGAGCCACG+GGG 0.774798 3:-104002508 MsG0380018072.01.T01:CDS
GATTGAGTCCAGAATCACGG+AGG 0.804340 3:+104002126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAACAATATACAC+CGG + Chr3:104002599-104002618 None:intergenic 15.0%
!!! TATTTTCTCTTTCATTTTAA+TGG - Chr3:104002284-104002303 MsG0380018072.01.T01:CDS 15.0%
!! CTCTAATGTAATTATATCTT+TGG + Chr3:104002421-104002440 None:intergenic 20.0%
!! TATAAATTAACCAATGTGTT+TGG + Chr3:104002665-104002684 None:intergenic 20.0%
!! TTACGAAATGAAAAAATCAA+TGG - Chr3:104001643-104001662 MsG0380018072.01.T01:CDS 20.0%
!! TTATTTCCGAAAAATGAAAA+TGG - Chr3:104000653-104000672 MsG0380018072.01.T01:three_prime_UTR 20.0%
!!! ATTGATTTTTTCATTTCGTA+AGG + Chr3:104001644-104001663 None:intergenic 20.0%
!!! TGTTTTTTTATTTCTTACGT+GGG - Chr3:104002607-104002626 MsG0380018072.01.T01:CDS 20.0%
!!! TTGTTTTTTTATTTCTTACG+TGG - Chr3:104002606-104002625 MsG0380018072.01.T01:CDS 20.0%
! AAAAAAGAAGAAGAAGGATT+TGG + Chr3:104001946-104001965 None:intergenic 25.0%
! AAAAAGAAGAAGAAGGATTT+GGG + Chr3:104001945-104001964 None:intergenic 25.0%
! ATGAATGAAGTGATTGATTA+AGG + Chr3:104001573-104001592 None:intergenic 25.0%
! CATACAAAAAAAGAAGAAGA+AGG + Chr3:104001952-104001971 None:intergenic 25.0%
! GAGAAAATATTATATGCACT+AGG + Chr3:104002273-104002292 None:intergenic 25.0%
! GATGTATCAAATAATAGTGT+TGG + Chr3:104002213-104002232 None:intergenic 25.0%
!! TGATTGATAAAGCATTAAAC+AGG + Chr3:104001890-104001909 None:intergenic 25.0%
!! TTTTTGTTACATTGCTTGAA+TGG - Chr3:104001993-104002012 MsG0380018072.01.T01:CDS 25.0%
!!! TATCAAATAATAGTGTTGGT+CGG + Chr3:104002209-104002228 None:intergenic 25.0%
!!! TTTCTCTTTCATTTTAATGG+TGG - Chr3:104002287-104002306 MsG0380018072.01.T01:CDS 25.0%
AAATATCTGATTGTTTCGAC+TGG + Chr3:104002500-104002519 None:intergenic 30.0%
AATATCTGATTGTTTCGACT+GGG + Chr3:104002499-104002518 None:intergenic 30.0%
ACAATTCATAATTCCAATGC+AGG - Chr3:104001406-104001425 MsG0380018072.01.T01:intron 30.0%
ACAGGTTTATTCCATTCTAT+TGG - Chr3:104002182-104002201 MsG0380018072.01.T01:CDS 30.0%
ACTTCTCACTATGTACATTT+GGG + Chr3:104002728-104002747 None:intergenic 30.0%
ATGCCTATAGTTGATTATAC+GGG - Chr3:104002316-104002335 MsG0380018072.01.T01:CDS 30.0%
ATTATACGGGAAATATTTGC+AGG - Chr3:104002329-104002348 MsG0380018072.01.T01:CDS 30.0%
ATTCAATGTGCTAAAGCAAT+GGG - Chr3:104001182-104001201 MsG0380018072.01.T01:intron 30.0%
CAATTCATAATTCCAATGCA+GGG - Chr3:104001407-104001426 MsG0380018072.01.T01:intron 30.0%
CATGCCTATAGTTGATTATA+CGG - Chr3:104002315-104002334 MsG0380018072.01.T01:CDS 30.0%
GAACATATTGAAGAAGTTGA+AGG - Chr3:104002464-104002483 MsG0380018072.01.T01:CDS 30.0%
GGAATAAACCTGTAAGAATA+GGG + Chr3:104002175-104002194 None:intergenic 30.0%
TATTCAATGTGCTAAAGCAA+TGG - Chr3:104001181-104001200 MsG0380018072.01.T01:intron 30.0%
TGCATTACTACATTTCCATT+GGG - Chr3:104002063-104002082 MsG0380018072.01.T01:intron 30.0%
TGGAATAAACCTGTAAGAAT+AGG + Chr3:104002176-104002195 None:intergenic 30.0%
TTATTCTTAAATACGCTTGC+CGG - Chr3:104002577-104002596 MsG0380018072.01.T01:CDS 30.0%
TTGCAAAACTCAACAAAATG+AGG + Chr3:104000762-104000781 None:intergenic 30.0%
TTGTATTCATCCAAACACAT+TGG - Chr3:104002652-104002671 MsG0380018072.01.T01:CDS 30.0%
TTTCCCGTATAATCAACTAT+AGG + Chr3:104002322-104002341 None:intergenic 30.0%
! ATGATTTGTAATTGCATACG+AGG - Chr3:104002531-104002550 MsG0380018072.01.T01:CDS 30.0%
! CATTTTGTTGAGTTTTGCAA+AGG - Chr3:104000762-104000781 MsG0380018072.01.T01:three_prime_UTR 30.0%
! CTCATTAATACTTGTTGCAT+TGG - Chr3:104001911-104001930 MsG0380018072.01.T01:intron 30.0%
! TTGATAAAGCATTAAACAGG+TGG + Chr3:104001887-104001906 None:intergenic 30.0%
!! TACATTAGAGAAGTATTTGC+AGG - Chr3:104002431-104002450 MsG0380018072.01.T01:CDS 30.0%
AAACTCAACAAAATGAGGAC+TGG + Chr3:104000757-104000776 None:intergenic 35.0%
AAATGATGTTGCTGACAGAT+TGG - Chr3:104001819-104001838 MsG0380018072.01.T01:intron 35.0%
AACTCAACAAAATGAGGACT+GGG + Chr3:104000756-104000775 None:intergenic 35.0%
AATACTTGATCTCCATGAGT+GGG + Chr3:104001262-104001281 None:intergenic 35.0%
ACACAATGTAATCACCTCTT+GGG + Chr3:104001707-104001726 None:intergenic 35.0%
ACTATTCCTGCTACATTAGT+TGG - Chr3:104001077-104001096 MsG0380018072.01.T01:intron 35.0%
AGCCTATCAAAACAGTTGAT+TGG - Chr3:104001141-104001160 MsG0380018072.01.T01:intron 35.0%
AGGAAGAAGGATTATTAGAG+TGG - Chr3:104000794-104000813 MsG0380018072.01.T01:three_prime_UTR 35.0%
ATAGCAATAGCAATTCAGAG+AGG - Chr3:104000847-104000866 MsG0380018072.01.T01:three_prime_UTR 35.0%
ATATGCACTAGGAATCTGTT+TGG + Chr3:104002262-104002281 None:intergenic 35.0%
ATCAAAACAGTTGATTGGGA+AGG - Chr3:104001146-104001165 MsG0380018072.01.T01:intron 35.0%
ATTTGTCCACTCAAAAAAGC+GGG + Chr3:104001803-104001822 None:intergenic 35.0%
CAAACAAACCCTATTCTTAC+AGG - Chr3:104002164-104002183 MsG0380018072.01.T01:CDS 35.0%
CACTTCTCACTATGTACATT+TGG + Chr3:104002729-104002748 None:intergenic 35.0%
CATTTGTCCACTCAAAAAAG+CGG + Chr3:104001804-104001823 None:intergenic 35.0%
CCTCGAAGAAAAATCTGTTT+GGG - Chr3:104001457-104001476 MsG0380018072.01.T01:intron 35.0%
CTCGAAGAAAAATCTGTTTG+GGG - Chr3:104001458-104001477 MsG0380018072.01.T01:intron 35.0%
CTGCATTACTACATTTCCAT+TGG - Chr3:104002062-104002081 MsG0380018072.01.T01:intron 35.0%
CTGTAGTTACATTAGCATCT+TGG + Chr3:104001744-104001763 None:intergenic 35.0%
CTTGCATGAAACCACATAAA+CGG + Chr3:104001331-104001350 None:intergenic 35.0%
GCATTACTACATTTCCATTG+GGG - Chr3:104002064-104002083 MsG0380018072.01.T01:intron 35.0%
GCCTATCAAAACAGTTGATT+GGG - Chr3:104001142-104001161 MsG0380018072.01.T01:intron 35.0%
GGAAGAAGGATTATTAGAGT+GGG - Chr3:104000795-104000814 MsG0380018072.01.T01:three_prime_UTR 35.0%
GGTAAACTTCTTACATTTGC+TGG - Chr3:104001664-104001683 MsG0380018072.01.T01:CDS 35.0%
TAGCAATAGCAATTCAGAGA+GGG - Chr3:104000848-104000867 MsG0380018072.01.T01:three_prime_UTR 35.0%
TCCTCGAAGAAAAATCTGTT+TGG - Chr3:104001456-104001475 MsG0380018072.01.T01:intron 35.0%
! ACAGATTTTTCTTCGAGGAT+AGG + Chr3:104001455-104001474 None:intergenic 35.0%
! CTGTAAGAATAGGGTTTGTT+TGG + Chr3:104002166-104002185 None:intergenic 35.0%
! TTTGTTGAGTTTTGCAAAGG+TGG - Chr3:104000765-104000784 MsG0380018072.01.T01:three_prime_UTR 35.0%
!!! TCCCAATCAACTGTTTTGAT+AGG + Chr3:104001146-104001165 None:intergenic 35.0%
AATCGCTTACATGGATACTC+AGG - Chr3:104001499-104001518 MsG0380018072.01.T01:intron 40.0%
AATGTAGCAGGAATAGTCTC+AGG + Chr3:104001074-104001093 None:intergenic 40.0%
AGGTGATTACATTGTGTGAG+AGG - Chr3:104001710-104001729 MsG0380018072.01.T01:CDS 40.0%
AGTATCCATGTAAGCGATTC+TGG + Chr3:104001498-104001517 None:intergenic 40.0%
ATGTTTGTCGCAGTTATGGA+TGG + Chr3:104001231-104001250 None:intergenic 40.0%
CAATACTTGATCTCCATGAG+TGG + Chr3:104001263-104001282 None:intergenic 40.0%
CACACAATGTAATCACCTCT+TGG + Chr3:104001708-104001727 None:intergenic 40.0%
CACATTGTCATCCGTTTATG+TGG - Chr3:104001317-104001336 MsG0380018072.01.T01:intron 40.0%
CCAACAAGTATACTTGTGGT+TGG - Chr3:104000903-104000922 MsG0380018072.01.T01:exon 40.0%
CCAACCACAAGTATACTTGT+TGG + Chr3:104000906-104000925 None:intergenic 40.0%
CTATATCCTAAAAGCAGCAG+AGG + Chr3:104001603-104001622 None:intergenic 40.0%
CTGACGAGTGAGTCTTAAAA+CGG + Chr3:104001776-104001795 None:intergenic 40.0%
GCATTAAACAGGTGGAGATT+AGG + Chr3:104001879-104001898 None:intergenic 40.0%
TAGGCCAACAAGTATACTTG+TGG - Chr3:104000899-104000918 MsG0380018072.01.T01:exon 40.0%
TGAACTCCAACTAATGTAGC+AGG + Chr3:104001086-104001105 None:intergenic 40.0%
TGCATACGAGGTAATGTTGT+GGG - Chr3:104002543-104002562 MsG0380018072.01.T01:CDS 40.0%
TGGATTTGGGTAAAAGCCAA+TGG + Chr3:104002098-104002117 None:intergenic 40.0%
TGTGATTGAGTCCAGAATCA+CGG + Chr3:104001301-104001320 None:intergenic 40.0%
TTCTTACGTGGGCTTACAAT+TGG - Chr3:104002618-104002637 MsG0380018072.01.T01:CDS 40.0%
TTGCATACGAGGTAATGTTG+TGG - Chr3:104002542-104002561 MsG0380018072.01.T01:CDS 40.0%
! ACTACTAGAGCAGCTGATTT+GGG + Chr3:104002029-104002048 None:intergenic 40.0%
! AGTATACTTGTTGGCCTAAC+AGG + Chr3:104000897-104000916 None:intergenic 40.0%
! AGTTTTCTCTGTTCCAATGG+CGG - Chr3:104002368-104002387 MsG0380018072.01.T01:CDS 40.0%
! ATTCCAATGCAGGGTCTTAT+TGG - Chr3:104001416-104001435 MsG0380018072.01.T01:intron 40.0%
! CACAGTTTTCTCTGTTCCAA+TGG - Chr3:104002365-104002384 MsG0380018072.01.T01:CDS 40.0%
! CCCAAACAGATTTTTCTTCG+AGG + Chr3:104001460-104001479 None:intergenic 40.0%
! TGACAGATTGGCATTTTCAG+AGG - Chr3:104001831-104001850 MsG0380018072.01.T01:intron 40.0%
! TTTTGATAGGCTCTTCAGGA+CGG + Chr3:104001133-104001152 None:intergenic 40.0%
! TTTTGCAAAGGTGGAAGAAG+AGG - Chr3:104000774-104000793 MsG0380018072.01.T01:three_prime_UTR 40.0%
!! GGGTCGCCATTTTCATTTTT+CGG + Chr3:104000662-104000681 None:intergenic 40.0%
!!! ACTGTTTTGATAGGCTCTTC+AGG + Chr3:104001137-104001156 None:intergenic 40.0%
!!! AGTTAACCCGCTTTTTTGAG+TGG - Chr3:104001794-104001813 MsG0380018072.01.T01:CDS 40.0%
AAGGTGGAAGAAGAGGAAGA+AGG - Chr3:104000781-104000800 MsG0380018072.01.T01:three_prime_UTR 45.0%
ATCCATGTAAGCGATTCTGG+TGG + Chr3:104001495-104001514 None:intergenic 45.0%
CAATAGCAATTCAGAGAGGG+CGG - Chr3:104000851-104000870 MsG0380018072.01.T01:three_prime_UTR 45.0%
CAGGATGTTTGTCGCAGTTA+TGG + Chr3:104001235-104001254 None:intergenic 45.0%
CGAGGATAGGAACAGCATAT+TGG + Chr3:104001442-104001461 None:intergenic 45.0%
GACTACTAGAGCAGCTGATT+TGG + Chr3:104002030-104002049 None:intergenic 45.0%
GGGTAAAAGCCAATGGCAAT+AGG + Chr3:104002091-104002110 None:intergenic 45.0%
GTGAGTCTTAAAACGGAGAC+AGG + Chr3:104001769-104001788 None:intergenic 45.0%
TAACTGCGACAAACATCCTG+AGG - Chr3:104001235-104001254 MsG0380018072.01.T01:intron 45.0%
TACATTGTGTGAGAGGCTTG+CGG - Chr3:104001717-104001736 MsG0380018072.01.T01:CDS 45.0%
TATACTTGTGGTTGGAGCCA+CGG - Chr3:104000911-104000930 MsG0380018072.01.T01:exon 45.0%
TCCATGTAAGCGATTCTGGT+GGG + Chr3:104001494-104001513 None:intergenic 45.0%
TGAGGACTGGGATAAAGAAC+AGG + Chr3:104000744-104000763 None:intergenic 45.0%
TGTTGGTCGGACCAATAGAA+TGG + Chr3:104002196-104002215 None:intergenic 45.0%
TTGATGTCCATCGACATGAG+TGG + Chr3:104002118-104002137 None:intergenic 45.0%
! ACTGTTATTGATTGCGCCAC+TGG - Chr3:104001107-104001126 MsG0380018072.01.T01:intron 45.0%
! AGCTGACTTCCTTCGTGATT+GGG - Chr3:104001016-104001035 MsG0380018072.01.T01:CDS 45.0%
! CCATCGACATGAGTGGATTT+GGG + Chr3:104002111-104002130 None:intergenic 45.0%
! CTTTGGGAAGGCAGATTGTT+CGG - Chr3:104000937-104000956 MsG0380018072.01.T01:CDS 45.0%
! TCCATCGACATGAGTGGATT+TGG + Chr3:104002112-104002131 None:intergenic 45.0%
!! CTTTGGTATCGACACCAAGT+AGG + Chr3:104002404-104002423 None:intergenic 45.0%
ACATTGTGTGAGAGGCTTGC+GGG - Chr3:104001718-104001737 MsG0380018072.01.T01:CDS 50.0%
AGGTTGTATGTCTCCGCCAT+TGG + Chr3:104002384-104002403 None:intergenic 50.0%
ATACTTGTGGTTGGAGCCAC+GGG - Chr3:104000912-104000931 MsG0380018072.01.T01:exon 50.0%
CAATCACGAAGGAAGTCAGC+TGG + Chr3:104001017-104001036 None:intergenic 50.0%
CAATGGCAATAGGTCCCCAA+TGG + Chr3:104002081-104002100 None:intergenic 50.0%
CATGTAAGCGATTCTGGTGG+GGG + Chr3:104001492-104001511 None:intergenic 50.0%
CATTGGGGACCTATTGCCAT+TGG - Chr3:104002079-104002098 MsG0380018072.01.T01:intron 50.0%
CCATGTAAGCGATTCTGGTG+GGG + Chr3:104001493-104001512 None:intergenic 50.0%
CCCAAATCCACTCATGTCGA+TGG - Chr3:104002108-104002127 MsG0380018072.01.T01:CDS 50.0%
GAGAACTTCCTCCGTGATTC+TGG - Chr3:104001287-104001306 MsG0380018072.01.T01:intron 50.0%
GATTGAGTCCAGAATCACGG+AGG + Chr3:104001298-104001317 None:intergenic 50.0%
GCGGAGACATACAACCTACT+TGG - Chr3:104002387-104002406 MsG0380018072.01.T01:CDS 50.0%
TGAAAATGGCGACCCTGATG+AGG - Chr3:104000667-104000686 MsG0380018072.01.T01:three_prime_UTR 50.0%
TGGCCAATAAGACCCTGCAT+TGG + Chr3:104001422-104001441 None:intergenic 50.0%
! CAGCTGACTTCCTTCGTGAT+TGG - Chr3:104001015-104001034 MsG0380018072.01.T01:CDS 50.0%
! GCTGACTTCCTTCGTGATTG+GGG - Chr3:104001017-104001036 MsG0380018072.01.T01:CDS 50.0%
!! GGCTGTTGGTAACCTCATCA+GGG + Chr3:104000682-104000701 None:intergenic 50.0%
!! TGGCTGTTGGTAACCTCATC+AGG + Chr3:104000683-104000702 None:intergenic 50.0%
!!! TGTCTGCCTCTGCTGCTTTT+AGG - Chr3:104001594-104001613 MsG0380018072.01.T01:CDS 50.0%
ACATCCTGAGGTCCCACTCA+TGG - Chr3:104001247-104001266 MsG0380018072.01.T01:intron 55.0%
ACCAACAGCCACACCTGGTA+GGG - Chr3:104000692-104000711 MsG0380018072.01.T01:three_prime_UTR 55.0%
AGGTTACCAACAGCCACACC+TGG - Chr3:104000687-104000706 MsG0380018072.01.T01:three_prime_UTR 55.0%
ATCTCCATGAGTGGGACCTC+AGG + Chr3:104001254-104001273 None:intergenic 55.0%
CAGTTGCTCCCCAATCACGA+AGG + Chr3:104001028-104001047 None:intergenic 55.0%
CCCCACCAGAATCGCTTACA+TGG - Chr3:104001490-104001509 MsG0380018072.01.T01:intron 55.0%
GGGAAGGCAGATTGTTCGGA+GGG - Chr3:104000941-104000960 MsG0380018072.01.T01:CDS 55.0%
TACCAACAGCCACACCTGGT+AGG - Chr3:104000691-104000710 MsG0380018072.01.T01:three_prime_UTR 55.0%
TACTTGTGGTTGGAGCCACG+GGG - Chr3:104000913-104000932 MsG0380018072.01.T01:exon 55.0%
TCAGAGAGGGCGGTGAATCT+TGG - Chr3:104000861-104000880 MsG0380018072.01.T01:three_prime_UTR 55.0%
TGGACGAAGGATACGACGTC+CGG - Chr3:104000967-104000986 MsG0380018072.01.T01:CDS 55.0%
TGGGAAGGCAGATTGTTCGG+AGG - Chr3:104000940-104000959 MsG0380018072.01.T01:CDS 55.0%
TTGGACCAGGGACACCTGTT+AGG - Chr3:104000880-104000899 MsG0380018072.01.T01:three_prime_UTR 55.0%
AACAGCCACACCTGGTAGGG+TGG - Chr3:104000695-104000714 MsG0380018072.01.T01:three_prime_UTR 60.0%
AAGTCAGCTGGAGCAGGCCT+CGG + Chr3:104001005-104001024 None:intergenic 60.0%
ACCCTACCAGGTGTGGCTGT+TGG + Chr3:104000696-104000715 None:intergenic 60.0%
ACGACGTCCGGTGTCTGGTA+AGG - Chr3:104000979-104000998 MsG0380018072.01.T01:CDS 60.0%
AGGATACGACGTCCGGTGTC+TGG - Chr3:104000974-104000993 MsG0380018072.01.T01:CDS 60.0%
AGGGCGGTGAATCTTGGACC+AGG - Chr3:104000867-104000886 MsG0380018072.01.T01:three_prime_UTR 60.0%
CGAAGGAAGTCAGCTGGAGC+AGG + Chr3:104001011-104001030 None:intergenic 60.0%
GGGCGGTGAATCTTGGACCA+GGG - Chr3:104000868-104000887 MsG0380018072.01.T01:three_prime_UTR 60.0%
GTTGGAGCCACGGGGACTTT+GGG - Chr3:104000921-104000940 MsG0380018072.01.T01:CDS 60.0%
TCTTGGGTAGTCCACGCACG+AGG + Chr3:104001691-104001710 None:intergenic 60.0%
! CATTTGCTGGTCCTCGTGCG+TGG - Chr3:104001677-104001696 MsG0380018072.01.T01:CDS 60.0%
! GCAGATTGTTCGGAGGGCAC+TGG - Chr3:104000947-104000966 MsG0380018072.01.T01:CDS 60.0%
! GTTGGCCTAACAGGTGTCCC+TGG + Chr3:104000888-104000907 None:intergenic 60.0%
! TCGTGCGTGGACTACCCAAG+AGG - Chr3:104001690-104001709 MsG0380018072.01.T01:CDS 60.0%
AGGCTCTTCAGGACGGCCAG+TGG + Chr3:104001126-104001145 None:intergenic 65.0%
CACCTGGTAGGGTGGTGAGG+AGG - Chr3:104000703-104000722 MsG0380018072.01.T01:three_prime_UTR 65.0%
CCACACCTGGTAGGGTGGTG+AGG - Chr3:104000700-104000719 MsG0380018072.01.T01:three_prime_UTR 65.0%
CCTCACCACCCTACCAGGTG+TGG + Chr3:104000703-104000722 None:intergenic 65.0%
CTGCCTTCCCAAAGTCCCCG+TGG + Chr3:104000931-104000950 None:intergenic 65.0%
GCCTCGGCCTTACCAGACAC+CGG + Chr3:104000989-104001008 None:intergenic 65.0%
GGTGGTGAGGAGGACGAGAG+AGG - Chr3:104000713-104000732 MsG0380018072.01.T01:three_prime_UTR 65.0%
GGTTGGAGCCACGGGGACTT+TGG - Chr3:104000920-104000939 MsG0380018072.01.T01:CDS 65.0%
GTCCTCCTCACCACCCTACC+AGG + Chr3:104000708-104000727 None:intergenic 65.0%
TCCGGTGTCTGGTAAGGCCG+AGG - Chr3:104000985-104001004 MsG0380018072.01.T01:CDS 65.0%
! GAGCCACGGGGACTTTGGGA+AGG - Chr3:104000925-104000944 MsG0380018072.01.T01:CDS 65.0%
!! GTTCGGAGGGCACTGGACGA+AGG - Chr3:104000954-104000973 MsG0380018072.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 104000613 104002830 104000613 ID=MsG0380018072.01;Name=MsG0380018072.01
Chr3 mRNA 104000613 104002830 104000613 ID=MsG0380018072.01.T01;Parent=MsG0380018072.01;Name=MsG0380018072.01.T01;_AED=0.45;_eAED=0.45;_QI=53|1|1|1|1|1|4|303|396
Chr3 exon 104000613 104001092 104000613 ID=MsG0380018072.01.T01:exon:6212;Parent=MsG0380018072.01.T01
Chr3 exon 104001591 104001827 104001591 ID=MsG0380018072.01.T01:exon:6211;Parent=MsG0380018072.01.T01
Chr3 exon 104001923 104002015 104001923 ID=MsG0380018072.01.T01:exon:6210;Parent=MsG0380018072.01.T01
Chr3 exon 104002094 104002830 104002094 ID=MsG0380018072.01.T01:exon:6209;Parent=MsG0380018072.01.T01
Chr3 five_prime_UTR 104002778 104002830 104002778 ID=MsG0380018072.01.T01:five_prime_utr;Parent=MsG0380018072.01.T01
Chr3 CDS 104002094 104002777 104002094 ID=MsG0380018072.01.T01:cds;Parent=MsG0380018072.01.T01
Chr3 CDS 104001923 104002015 104001923 ID=MsG0380018072.01.T01:cds;Parent=MsG0380018072.01.T01
Chr3 CDS 104001591 104001827 104001591 ID=MsG0380018072.01.T01:cds;Parent=MsG0380018072.01.T01
Chr3 CDS 104000916 104001092 104000916 ID=MsG0380018072.01.T01:cds;Parent=MsG0380018072.01.T01
Chr3 three_prime_UTR 104000613 104000915 104000613 ID=MsG0380018072.01.T01:three_prime_utr;Parent=MsG0380018072.01.T01
Gene Sequence

>MsG0380018072.01.T01

ATGAAAATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGGGTGGTGAGGAGGACGAGAGAGGCATTTCCTGTTCTTTATCCCAGTCCTCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGAGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCGGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGATTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCTGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGGTCTTATTGGCCAATATGCTGTTCCTATCCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCGTTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>MsG0380018072.01.T01

MKMATLMRLPTATPGRVVRRTREAFPVLYPSPHFVEFCKGGRRGRRIIRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF*