AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004177.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004177.01.T01 MTR_1g076570 98.824 340 4 0 1 340 1 340 0.0 697
MsG0180004177.01.T01 MTR_1g071110 75.287 348 77 3 1 340 1 347 1.74e-176 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004177.01.T01 AT3G63410 76.522 345 69 4 1 340 1 338 2.96e-180 502

Find 125 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGAACATTGTTTATT+TGG 0.134864 1:-74488420 MsG0180004177.01.T01:three_prime_UTR
AACACAAGAAAGAAGCATTT+TGG 0.213825 1:-74490472 MsG0180004177.01.T01:CDS
AGCATATAAGCCAAGTTTAT+TGG 0.221137 1:-74488373 MsG0180004177.01.T01:three_prime_UTR
GTCCTGTATACCCAACATTT+TGG 0.229561 1:-74489077 MsG0180004177.01.T01:CDS
TCTTTAAGCCACATGTAAAT+TGG 0.231207 1:+74488664 None:intergenic
CGCACACCGCGATACCATTT+TGG 0.239417 1:+74488946 None:intergenic
AGAAACACCAATGGATTTAC+AGG 0.256390 1:+74488736 None:intergenic
CTGATTTCTGATTTCATGTC+TGG 0.273349 1:-74488323 MsG0180004177.01.T01:three_prime_UTR
TTCAGCACCACTAAGCATTA+AGG 0.275776 1:+74490676 None:intergenic
GTATATTGAATGGTTTAAAA+AGG 0.282915 1:-74489004 MsG0180004177.01.T01:CDS
TTTCTCTCAAGGCTCATTCT+TGG 0.311957 1:-74488718 MsG0180004177.01.T01:CDS
TTCTTGTGTTGGATGAATCT+AGG 0.315559 1:+74490485 None:intergenic
TCAATATACTCTTCCTCCTT+AGG 0.315806 1:+74489018 None:intergenic
GTTAATTTGTTGACATGTTT+TGG 0.318002 1:-74488492 MsG0180004177.01.T01:three_prime_UTR
ATGTCAACAAATTAACATTA+TGG 0.319352 1:+74488499 None:intergenic
GCCTGCCCTTTGGAACAATT+TGG 0.321260 1:+74488641 None:intergenic
GCATATAGAGTTCTGAAAAT+AGG 0.330673 1:-74489120 MsG0180004177.01.T01:CDS
TTTGCAACTGAAATGGAAAA+TGG 0.332120 1:+74490812 None:intergenic
ATCAGGCGACTCTCCCCTTC+AGG 0.333951 1:-74488875 MsG0180004177.01.T01:intron
GGAGGCAAAGCGTGCATTAT+AGG 0.339249 1:-74489099 MsG0180004177.01.T01:CDS
TATAAAAGTGTTAATTTCCT+TGG 0.349879 1:-74490736 MsG0180004177.01.T01:five_prime_UTR
TGAAAAGAATAGGTCCAAAA+TGG 0.366680 1:-74488960 MsG0180004177.01.T01:CDS
TGTTGTTCAGTATTGAATAC+TGG 0.372308 1:-74489170 MsG0180004177.01.T01:intron
GATTAAATACGCCTGCCCTT+TGG 0.378600 1:+74488631 None:intergenic
TGTTTATTTGGAGGTTAGTC+AGG 0.380528 1:-74488408 MsG0180004177.01.T01:three_prime_UTR
TTGGAGAATCAAGTAAAGTT+GGG 0.387660 1:-74488603 MsG0180004177.01.T01:three_prime_UTR
ACTGGTGTCAAACCTTTATC+AGG 0.388260 1:-74488892 MsG0180004177.01.T01:CDS
AACCAAAATGTTGGGTATAC+AGG 0.392300 1:+74489075 None:intergenic
GTGGATGTTGGAGGAGGAAC+TGG 0.396715 1:-74490332 MsG0180004177.01.T01:CDS
AGCATAGTTCCATCTGGATT+AGG 0.398282 1:-74490635 MsG0180004177.01.T01:CDS
ATTGGAGAATCAAGTAAAGT+TGG 0.403522 1:-74488604 MsG0180004177.01.T01:three_prime_UTR
TTTGGAATTTGCAACTGAAA+TGG 0.404023 1:+74490805 None:intergenic
TGGTAAGGTACATAATGTTA+TGG 0.407729 1:+74490832 None:intergenic
GCGGCGGCACGGCCTCATCA+TGG 0.410184 1:-74488926 MsG0180004177.01.T01:CDS
AAAATGCTTCTTTCTTGTGT+TGG 0.410236 1:+74490474 None:intergenic
AGGGGAGAGTCGCCTGATAA+AGG 0.412042 1:+74488880 None:intergenic
GAATCGTAGTAAAATTTAAG+AGG 0.413419 1:+74488457 None:intergenic
GAAATGAGACATGGATGGTT+TGG 0.414913 1:+74490787 None:intergenic
CAATATACTCTTCCTCCTTA+GGG 0.416784 1:+74489019 None:intergenic
TTAATGCCACGCTGTGGATC+AGG 0.419899 1:+74489147 None:intergenic
CAGACATGAAATCAGAAATC+AGG 0.420206 1:+74488324 None:intergenic
AGAAATAATGTAGTTTCATA+TGG 0.423298 1:-74490575 MsG0180004177.01.T01:CDS
AAAGAATGTAAGATAATTGA+AGG 0.432985 1:-74490206 MsG0180004177.01.T01:CDS
ATTAATAGCATAGTTCCATC+TGG 0.434382 1:-74490641 MsG0180004177.01.T01:CDS
ATGGCCTCCTTAATGCTTAG+TGG 0.436810 1:-74490683 MsG0180004177.01.T01:CDS
CTTTATGTAGCTTGGTCCTA+AGG 0.446738 1:-74488776 MsG0180004177.01.T01:intron
TCCGCATAATCAGTTGGAAA+TGG 0.449194 1:+74490167 None:intergenic
ATCATGGGTTGTTCTGTCAC+TGG 0.452148 1:-74488910 MsG0180004177.01.T01:CDS
GATGTCAAGCTGAAAAGAAT+AGG 0.453690 1:-74488970 MsG0180004177.01.T01:CDS
ATTATGGAAGGCAAAGTTCA+TGG 0.458064 1:+74488515 None:intergenic
CGGCGGCACGGCCTCATCAT+GGG 0.458451 1:-74488925 MsG0180004177.01.T01:CDS
GCGGACCGATATGTTTCTGC+TGG 0.461499 1:-74490149 MsG0180004177.01.T01:CDS
TTTGAACATTGTTTATTTGG+AGG 0.466055 1:-74488417 MsG0180004177.01.T01:three_prime_UTR
GTTTCATATGGTAACAAATA+CGG 0.485582 1:-74490563 MsG0180004177.01.T01:CDS
CATCCACAACTCGCATTCTC+CGG 0.485995 1:+74490348 None:intergenic
ACCAAATTGTTCCAAAGGGC+AGG 0.486418 1:-74488642 MsG0180004177.01.T01:CDS
TATCGCGGTGTGCGGCGGCA+CGG 0.488724 1:-74488937 MsG0180004177.01.T01:CDS
AGGCGTATTTAATCGAAGAT+TGG 0.490077 1:-74488622 MsG0180004177.01.T01:exon
ATGTCTTCAGTCCAGTGACC+TGG 0.491830 1:+74490407 None:intergenic
AATTGAGACAACCAAAATGT+TGG 0.493584 1:+74489066 None:intergenic
ATTGAGACAACCAAAATGTT+GGG 0.494828 1:+74489067 None:intergenic
TTCTGTACATCCTCTACCTT+AGG 0.496880 1:+74488760 None:intergenic
AAACTTGGCTTATATGCTGC+AGG 0.498720 1:+74488378 None:intergenic
GGAACTGGATTCACTACTCT+TGG 0.502345 1:-74490317 MsG0180004177.01.T01:CDS
ATATAATAAATCCAGGTCAC+TGG 0.503119 1:-74490418 MsG0180004177.01.T01:CDS
ATAAGCCAAGTTTATTGGAT+AGG 0.503163 1:-74488368 MsG0180004177.01.T01:three_prime_UTR
GTCTCCTCATCAGCTGGCTA+AGG 0.507432 1:-74490249 MsG0180004177.01.T01:CDS
ACCTTCCAGCAGAAACATAT+CGG 0.509798 1:+74490144 None:intergenic
ATCCATTGGTGTTTCTCTCA+AGG 0.513270 1:-74488729 MsG0180004177.01.T01:CDS
CTCCGGTCATACAAATCAGC+AGG 0.515409 1:+74490365 None:intergenic
CTCAATTCTTTGCAGACATG+TGG 0.515450 1:-74489050 MsG0180004177.01.T01:CDS
AGCAATACCTCAGTGGTGAA+TGG 0.518290 1:-74490941 MsG0180004177.01.T01:five_prime_UTR
TGATCAGTCTCCTCATCAGC+TGG 0.520456 1:-74490255 MsG0180004177.01.T01:CDS
TACATGTGAGTGGTGCTGAT+TGG 0.522534 1:+74490895 None:intergenic
TCTGATGATTGATGTTCTCA+AGG 0.524510 1:-74488560 MsG0180004177.01.T01:three_prime_UTR
TAAAGACCAAATTGTTCCAA+AGG 0.528009 1:-74488647 MsG0180004177.01.T01:CDS
AGCCTGCTGATTTGTATGAC+CGG 0.529953 1:-74490367 MsG0180004177.01.T01:CDS
AACTGAAATGGAAAATGGTA+AGG 0.530261 1:+74490817 None:intergenic
GCTGGCTAAGGCTAAGAAGA+AGG 0.533762 1:-74490237 MsG0180004177.01.T01:CDS
TATGATCATATAATAAATCC+AGG 0.542176 1:-74490425 MsG0180004177.01.T01:CDS
AAAGACCAAATTGTTCCAAA+GGG 0.542862 1:-74488646 MsG0180004177.01.T01:CDS
ACCGATATGTTTCTGCTGGA+AGG 0.544245 1:-74490145 MsG0180004177.01.T01:intron
TCCATTTCCAACTGATTATG+CGG 0.544265 1:-74490168 MsG0180004177.01.T01:CDS
CATGTGGATGCTCTTCCCTA+AGG 0.545532 1:-74489034 MsG0180004177.01.T01:CDS
CACCACTCACATGTATTATG+TGG 0.551164 1:-74490887 MsG0180004177.01.T01:five_prime_UTR
ATGCGAGTTGTGGATGTTGG+AGG 0.558982 1:-74490341 MsG0180004177.01.T01:CDS
TGGAACTAGTACATAGTAAG+TGG 0.561824 1:+74488684 None:intergenic
GTAGCTTGGTCCTAAGGTAG+AGG 0.563615 1:-74488770 MsG0180004177.01.T01:intron
ACTAAGCATTAAGGAGGCCA+TGG 0.563703 1:+74490685 None:intergenic
AGGAGGAAGAGTATATTGAA+TGG 0.563879 1:-74489014 MsG0180004177.01.T01:CDS
ATGAATCTAGGCTGAGAAGA+AGG 0.567539 1:+74490497 None:intergenic
TACTAGTTCCAATTTACATG+TGG 0.569755 1:-74488672 MsG0180004177.01.T01:CDS
GATGCAGCATCTCATCCGCA+AGG 0.572011 1:-74490520 MsG0180004177.01.T01:CDS
CAACAAATTAACATTATGGA+AGG 0.575099 1:+74488503 None:intergenic
AGAATGCGAGTTGTGGATGT+TGG 0.578151 1:-74490344 MsG0180004177.01.T01:CDS
ACAGAAGCCTGTAAATCCAT+TGG 0.579520 1:-74488743 MsG0180004177.01.T01:CDS
CTCACAGAACCTAATCCAGA+TGG 0.579852 1:+74490626 None:intergenic
TTAGCCTTAGCCAGCTGATG+AGG 0.582379 1:+74490245 None:intergenic
TGTATTCTATAGTACCTGAA+GGG 0.582741 1:+74488861 None:intergenic
TTAATACTAAGATTCTTCCA+AGG 0.583577 1:+74490719 None:intergenic
CAAAATGGTATCGCGGTGTG+CGG 0.584931 1:-74488945 MsG0180004177.01.T01:CDS
TGGAGAATCAAGTAAAGTTG+GGG 0.588040 1:-74488602 MsG0180004177.01.T01:three_prime_UTR
AATGGTATCGCGGTGTGCGG+CGG 0.590801 1:-74488942 MsG0180004177.01.T01:CDS
GAATCAAGTAAAGTTGGGGT+AGG 0.591713 1:-74488598 MsG0180004177.01.T01:three_prime_UTR
TATAGAGTTCTGAAAATAGG+AGG 0.592372 1:-74489117 MsG0180004177.01.T01:CDS
TATGCTGCAATATAACTAAG+TGG 0.595980 1:+74490857 None:intergenic
TATCGGTCCGCATAATCAGT+TGG 0.596748 1:+74490161 None:intergenic
TATTAAGTTCTACAACTCCA+TGG 0.596798 1:-74490702 MsG0180004177.01.T01:exon
TGTGGTCAAACATTGACTCA+TGG 0.611013 1:+74488236 None:intergenic
CGAGTTGTGGATGTTGGAGG+AGG 0.623443 1:-74490338 MsG0180004177.01.T01:CDS
AGCACCACTAAGCATTAAGG+AGG 0.625927 1:+74490679 None:intergenic
TGACCGGAGAATGCGAGTTG+TGG 0.630299 1:-74490351 MsG0180004177.01.T01:CDS
TGACAGAACAACCCATGATG+AGG 0.635531 1:+74488914 None:intergenic
GTGGATGCTCTTCCCTAAGG+AGG 0.637523 1:-74489031 MsG0180004177.01.T01:CDS
TCATAGAAATGAGACATGGA+TGG 0.640099 1:+74490782 None:intergenic
GCTTCTTTAATGCCACGCTG+TGG 0.647758 1:+74489141 None:intergenic
AGCCTTGAGAGAAACACCAA+TGG 0.656851 1:+74488727 None:intergenic
GTATTCTATAGTACCTGAAG+GGG 0.660431 1:+74488862 None:intergenic
AGGCTGAGAAGAAGGCCTTG+CGG 0.675664 1:+74490505 None:intergenic
ATAGGTCCAAAATGGTATCG+CGG 0.700687 1:-74488952 MsG0180004177.01.T01:CDS
ATGTGATAGCAATACCTCAG+TGG 0.708177 1:-74490948 MsG0180004177.01.T01:five_prime_UTR
TATATCATAGAAATGAGACA+TGG 0.715108 1:+74490778 None:intergenic
TGTTGTTCCATTCACCACTG+AGG 0.726264 1:+74490934 None:intergenic
TACTGGCCTGATCCACAGCG+TGG 0.734098 1:-74489153 MsG0180004177.01.T01:CDS
CACCACATAATACATGTGAG+TGG 0.746020 1:+74490885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTAAAGAACTTTAGA+AGG + Chr1:74490362-74490381 None:intergenic 15.0%
!! TTATAAAATGTCATTCAAAA+TGG - Chr1:74489409-74489428 MsG0180004177.01.T01:intron 15.0%
!!! ATCTTTTTGTTTTACTTAAT+AGG - Chr1:74489309-74489328 MsG0180004177.01.T01:intron 15.0%
!!! GATTTACTTTTCAAAATTAA+TGG - Chr1:74490659-74490678 MsG0180004177.01.T01:CDS 15.0%
!!! TTATTTTAAGTTAAAAGACT+AGG - Chr1:74489161-74489180 MsG0180004177.01.T01:CDS 15.0%
!! AAAGAATGTAAGATAATTGA+AGG - Chr1:74488991-74489010 MsG0180004177.01.T01:CDS 20.0%
!! AAATGAGTAAATAGACAAAT+TGG + Chr1:74489840-74489859 None:intergenic 20.0%
!! AGAAATAATGTAGTTTCATA+TGG - Chr1:74488622-74488641 MsG0180004177.01.T01:exon 20.0%
!! ATGTCAACAAATTAACATTA+TGG + Chr1:74490701-74490720 None:intergenic 20.0%
!! GTATATTGAATGGTTTAAAA+AGG - Chr1:74490193-74490212 MsG0180004177.01.T01:CDS 20.0%
!! TACTTTGAACATTGTTTATT+TGG - Chr1:74490777-74490796 MsG0180004177.01.T01:five_prime_UTR 20.0%
!! TATGATCATATAATAAATCC+AGG - Chr1:74488772-74488791 MsG0180004177.01.T01:intron 20.0%
!! TTATGTTACATTGATACATA+AGG + Chr1:74490000-74490019 None:intergenic 20.0%
!!! AAATGAAAAGACATCTTTTA+TGG - Chr1:74489279-74489298 MsG0180004177.01.T01:intron 20.0%
!!! AATATTTTGTAAAGCTCAAA+TGG + Chr1:74489255-74489274 None:intergenic 20.0%
!!! ATATTTTGTAAAGCTCAAAT+GGG + Chr1:74489254-74489273 None:intergenic 20.0%
!!! CTAATTTGTCTATGAAATTT+AGG - Chr1:74489543-74489562 MsG0180004177.01.T01:intron 20.0%
!!! GTTTTACTTAATAGGAAAAT+TGG - Chr1:74489317-74489336 MsG0180004177.01.T01:intron 20.0%
!!! TATAAAAGTGTTAATTTCCT+TGG - Chr1:74488461-74488480 MsG0180004177.01.T01:three_prime_UTR 20.0%
! AGGTCAACTAAAGAAAAAAA+TGG - Chr1:74489563-74489582 MsG0180004177.01.T01:intron 25.0%
! CAACAAATTAACATTATGGA+AGG + Chr1:74490697-74490716 None:intergenic 25.0%
! GAATCGTAGTAAAATTTAAG+AGG + Chr1:74490743-74490762 None:intergenic 25.0%
! GTTTCATATGGTAACAAATA+CGG - Chr1:74488634-74488653 MsG0180004177.01.T01:CDS 25.0%
! TATATCATAGAAATGAGACA+TGG + Chr1:74488422-74488441 None:intergenic 25.0%
! TGTATATACTGCAAGATTTA+TGG - Chr1:74489123-74489142 MsG0180004177.01.T01:CDS 25.0%
! TTAATACTAAGATTCTTCCA+AGG + Chr1:74488481-74488500 None:intergenic 25.0%
! TTTGAACATTGTTTATTTGG+AGG - Chr1:74490780-74490799 MsG0180004177.01.T01:five_prime_UTR 25.0%
!! TCTATTTACTCATTTTCTAG+AGG - Chr1:74489845-74489864 MsG0180004177.01.T01:intron 25.0%
!! TTTTACCTATCCAATAAACT+TGG + Chr1:74490837-74490856 None:intergenic 25.0%
!!! ATTTTACTACGATTCTGAAA+TGG - Chr1:74490748-74490767 MsG0180004177.01.T01:five_prime_UTR 25.0%
!!! GTTAATTTGTTGACATGTTT+TGG - Chr1:74490705-74490724 MsG0180004177.01.T01:exon 25.0%
AAAATGCTTCTTTCTTGTGT+TGG + Chr1:74488726-74488745 None:intergenic 30.0%
AAAGACCAAATTGTTCCAAA+GGG - Chr1:74490551-74490570 MsG0180004177.01.T01:CDS 30.0%
AACTGAAATGGAAAATGGTA+AGG + Chr1:74488383-74488402 None:intergenic 30.0%
AATTGAGACAACCAAAATGT+TGG + Chr1:74490134-74490153 None:intergenic 30.0%
AGCATATAAGCCAAGTTTAT+TGG - Chr1:74490824-74490843 MsG0180004177.01.T01:five_prime_UTR 30.0%
ATAAGCCAAGTTTATTGGAT+AGG - Chr1:74490829-74490848 MsG0180004177.01.T01:five_prime_UTR 30.0%
ATATAATAAATCCAGGTCAC+TGG - Chr1:74488779-74488798 MsG0180004177.01.T01:intron 30.0%
ATTAATAGCATAGTTCCATC+TGG - Chr1:74488556-74488575 MsG0180004177.01.T01:three_prime_UTR 30.0%
ATTGAATGGTTTAAAAAGGC+TGG - Chr1:74490197-74490216 MsG0180004177.01.T01:CDS 30.0%
ATTGAGACAACCAAAATGTT+GGG + Chr1:74490133-74490152 None:intergenic 30.0%
ATTGGAGAATCAAGTAAAGT+TGG - Chr1:74490593-74490612 MsG0180004177.01.T01:CDS 30.0%
CCAATTTGAATGACATATCA+TGG + Chr1:74489474-74489493 None:intergenic 30.0%
CCATGATATGTCATTCAAAT+TGG - Chr1:74489471-74489490 MsG0180004177.01.T01:intron 30.0%
TAAAGACCAAATTGTTCCAA+AGG - Chr1:74490550-74490569 MsG0180004177.01.T01:CDS 30.0%
TACTAGTTCCAATTTACATG+TGG - Chr1:74490525-74490544 MsG0180004177.01.T01:CDS 30.0%
TAGCTGTAAAAGCTAACATA+TGG - Chr1:74489721-74489740 MsG0180004177.01.T01:intron 30.0%
TATGCTGCAATATAACTAAG+TGG + Chr1:74488343-74488362 None:intergenic 30.0%
TATTAAGTTCTACAACTCCA+TGG - Chr1:74488495-74488514 MsG0180004177.01.T01:three_prime_UTR 30.0%
TCCCTAAAATTGTTAAGTGA+CGG + Chr1:74489757-74489776 None:intergenic 30.0%
TCTTGCAGTATATACAATGA+AGG + Chr1:74489119-74489138 None:intergenic 30.0%
TCTTTAAGCCACATGTAAAT+TGG + Chr1:74490536-74490555 None:intergenic 30.0%
TGAAAAGAATAGGTCCAAAA+TGG - Chr1:74490237-74490256 MsG0180004177.01.T01:CDS 30.0%
TGGTAAGGTACATAATGTTA+TGG + Chr1:74488368-74488387 None:intergenic 30.0%
TGTATTCTATAGTACCTGAA+GGG + Chr1:74490339-74490358 None:intergenic 30.0%
TTGGAGAATCAAGTAAAGTT+GGG - Chr1:74490594-74490613 MsG0180004177.01.T01:CDS 30.0%
TTTGCAACTGAAATGGAAAA+TGG + Chr1:74488388-74488407 None:intergenic 30.0%
! ACCGTCACTTAACAATTTTA+GGG - Chr1:74489753-74489772 MsG0180004177.01.T01:intron 30.0%
! TGTTGTTCAGTATTGAATAC+TGG - Chr1:74490027-74490046 MsG0180004177.01.T01:intron 30.0%
! TTTGGAATTTGCAACTGAAA+TGG + Chr1:74488395-74488414 None:intergenic 30.0%
!! ACTCATTTTCTAGAGGAAAA+TGG - Chr1:74489852-74489871 MsG0180004177.01.T01:intron 30.0%
!! GCATATAGAGTTCTGAAAAT+AGG - Chr1:74490077-74490096 MsG0180004177.01.T01:intron 30.0%
!! TATAGAGTTCTGAAAATAGG+AGG - Chr1:74490080-74490099 MsG0180004177.01.T01:intron 30.0%
!! TGACAAATTAGTCTTTAGTG+TGG - Chr1:74489618-74489637 MsG0180004177.01.T01:intron 30.0%
!!! AACACAAGAAAGAAGCATTT+TGG - Chr1:74488725-74488744 MsG0180004177.01.T01:CDS 30.0%
!!! AAGAAGCATTTTGGTTTTAC+AGG - Chr1:74488734-74488753 MsG0180004177.01.T01:CDS 30.0%
AACCAAAATGTTGGGTATAC+AGG + Chr1:74490125-74490144 None:intergenic 35.0%
AAGACTAGGTATGTGTTACA+TGG - Chr1:74489175-74489194 MsG0180004177.01.T01:intron 35.0%
ACATCAATGTCAACTCACTA+AGG - Chr1:74489519-74489538 MsG0180004177.01.T01:intron 35.0%
ACTCAAAATTAAGGCATGGT+TGG - Chr1:74489208-74489227 MsG0180004177.01.T01:intron 35.0%
AGGCGTATTTAATCGAAGAT+TGG - Chr1:74490575-74490594 MsG0180004177.01.T01:CDS 35.0%
ATGCATGTCTTTATGTAGCT+TGG - Chr1:74490413-74490432 MsG0180004177.01.T01:CDS 35.0%
ATTATGGAAGGCAAAGTTCA+TGG + Chr1:74490685-74490704 None:intergenic 35.0%
CAATATACTCTTCCTCCTTA+GGG + Chr1:74490181-74490200 None:intergenic 35.0%
CAGACATGAAATCAGAAATC+AGG + Chr1:74490876-74490895 None:intergenic 35.0%
CTGATTTCTGATTTCATGTC+TGG - Chr1:74490874-74490893 MsG0180004177.01.T01:five_prime_UTR 35.0%
GATAGGTAAAAAACATGTGC+TGG - Chr1:74490846-74490865 MsG0180004177.01.T01:five_prime_UTR 35.0%
GATGTCAAGCTGAAAAGAAT+AGG - Chr1:74490227-74490246 MsG0180004177.01.T01:CDS 35.0%
GTATTCTATAGTACCTGAAG+GGG + Chr1:74490338-74490357 None:intergenic 35.0%
GTGTATTCTATAGTACCTGA+AGG + Chr1:74490340-74490359 None:intergenic 35.0%
TCAATATACTCTTCCTCCTT+AGG + Chr1:74490182-74490201 None:intergenic 35.0%
TCATAGAAATGAGACATGGA+TGG + Chr1:74488418-74488437 None:intergenic 35.0%
TCCATTTCCAACTGATTATG+CGG - Chr1:74489029-74489048 MsG0180004177.01.T01:CDS 35.0%
TCTGATGATTGATGTTCTCA+AGG - Chr1:74490637-74490656 MsG0180004177.01.T01:CDS 35.0%
TGGAACTAGTACATAGTAAG+TGG + Chr1:74490516-74490535 None:intergenic 35.0%
TGGAGAATCAAGTAAAGTTG+GGG - Chr1:74490595-74490614 MsG0180004177.01.T01:CDS 35.0%
TTCTTGTGTTGGATGAATCT+AGG + Chr1:74488715-74488734 None:intergenic 35.0%
TTGCCAATTCGCAAAATTGA+TGG + Chr1:74489375-74489394 None:intergenic 35.0%
TTGGACTCAAAATTAAGGCA+TGG - Chr1:74489204-74489223 MsG0180004177.01.T01:intron 35.0%
! ACGGTTTGGACTCAAAATTA+AGG - Chr1:74489199-74489218 MsG0180004177.01.T01:intron 35.0%
! AGAAACACCAATGGATTTAC+AGG + Chr1:74490464-74490483 None:intergenic 35.0%
! AGGAGGAAGAGTATATTGAA+TGG - Chr1:74490183-74490202 MsG0180004177.01.T01:CDS 35.0%
! AGTCCATCAATTTTGCGAAT+TGG - Chr1:74489369-74489388 MsG0180004177.01.T01:intron 35.0%
! GACCGTCACTTAACAATTTT+AGG - Chr1:74489752-74489771 MsG0180004177.01.T01:intron 35.0%
! TAGTGAGTTGACATTGATGT+GGG + Chr1:74489519-74489538 None:intergenic 35.0%
! TGTTTATTTGGAGGTTAGTC+AGG - Chr1:74490789-74490808 MsG0180004177.01.T01:five_prime_UTR 35.0%
! TTAGTGAGTTGACATTGATG+TGG + Chr1:74489520-74489539 None:intergenic 35.0%
!! CAAATTAGTCTTTAGTGTGG+TGG - Chr1:74489621-74489640 MsG0180004177.01.T01:intron 35.0%
AAACTTGGCTTATATGCTGC+AGG + Chr1:74490822-74490841 None:intergenic 40.0%
ACAGAAGCCTGTAAATCCAT+TGG - Chr1:74490454-74490473 MsG0180004177.01.T01:CDS 40.0%
ACCTTCCAGCAGAAACATAT+CGG + Chr1:74489056-74489075 None:intergenic 40.0%
AGCATAGTTCCATCTGGATT+AGG - Chr1:74488562-74488581 MsG0180004177.01.T01:three_prime_UTR 40.0%
ATAGGTCCAAAATGGTATCG+CGG - Chr1:74490245-74490264 MsG0180004177.01.T01:CDS 40.0%
ATGAATCTAGGCTGAGAAGA+AGG + Chr1:74488703-74488722 None:intergenic 40.0%
ATGATATGGAATCAAGGTGG+AGG - Chr1:74489653-74489672 MsG0180004177.01.T01:intron 40.0%
ATGGCCATGATATGGAATCA+AGG - Chr1:74489647-74489666 MsG0180004177.01.T01:intron 40.0%
ATGTGATAGCAATACCTCAG+TGG - Chr1:74488249-74488268 MsG0180004177.01.T01:three_prime_UTR 40.0%
CACCACATAATACATGTGAG+TGG + Chr1:74488315-74488334 None:intergenic 40.0%
CACCACTCACATGTATTATG+TGG - Chr1:74488310-74488329 MsG0180004177.01.T01:three_prime_UTR 40.0%
CTCAATTCTTTGCAGACATG+TGG - Chr1:74490147-74490166 MsG0180004177.01.T01:CDS 40.0%
CTTTATGTAGCTTGGTCCTA+AGG - Chr1:74490421-74490440 MsG0180004177.01.T01:CDS 40.0%
GAAATGAGACATGGATGGTT+TGG + Chr1:74488413-74488432 None:intergenic 40.0%
GAATCAAGTAAAGTTGGGGT+AGG - Chr1:74490599-74490618 MsG0180004177.01.T01:CDS 40.0%
TAGGTATGTGTTACATGGCA+CGG - Chr1:74489180-74489199 MsG0180004177.01.T01:intron 40.0%
TCCACCTTGATTCCATATCA+TGG + Chr1:74489654-74489673 None:intergenic 40.0%
TCCGCATAATCAGTTGGAAA+TGG + Chr1:74489033-74489052 None:intergenic 40.0%
TGATTCCATATCATGGCCAT+TGG + Chr1:74489647-74489666 None:intergenic 40.0%
TTCAGCACCACTAAGCATTA+AGG + Chr1:74488524-74488543 None:intergenic 40.0%
TTCTGTACATCCTCTACCTT+AGG + Chr1:74490440-74490459 None:intergenic 40.0%
TTTCTCTCAAGGCTCATTCT+TGG - Chr1:74490479-74490498 MsG0180004177.01.T01:CDS 40.0%
! ACTGGTGTCAAACCTTTATC+AGG - Chr1:74490305-74490324 MsG0180004177.01.T01:CDS 40.0%
! ATCCATTGGTGTTTCTCTCA+AGG - Chr1:74490468-74490487 MsG0180004177.01.T01:CDS 40.0%
! GTCCTGTATACCCAACATTT+TGG - Chr1:74490120-74490139 MsG0180004177.01.T01:intron 40.0%
!! TGTGGTCAAACATTGACTCA+TGG + Chr1:74490964-74490983 None:intergenic 40.0%
ACCAAATTGTTCCAAAGGGC+AGG - Chr1:74490555-74490574 MsG0180004177.01.T01:CDS 45.0%
ACTAAGCATTAAGGAGGCCA+TGG + Chr1:74488515-74488534 None:intergenic 45.0%
AGAATGCGAGTTGTGGATGT+TGG - Chr1:74488853-74488872 MsG0180004177.01.T01:intron 45.0%
AGCAATACCTCAGTGGTGAA+TGG - Chr1:74488256-74488275 MsG0180004177.01.T01:three_prime_UTR 45.0%
AGCACCACTAAGCATTAAGG+AGG + Chr1:74488521-74488540 None:intergenic 45.0%
AGCCTTGAGAGAAACACCAA+TGG + Chr1:74490473-74490492 None:intergenic 45.0%
ATGGCCTCCTTAATGCTTAG+TGG - Chr1:74488514-74488533 MsG0180004177.01.T01:three_prime_UTR 45.0%
ATGTGTTACATGGCACGGTT+TGG - Chr1:74489185-74489204 MsG0180004177.01.T01:intron 45.0%
CTCACAGAACCTAATCCAGA+TGG + Chr1:74488574-74488593 None:intergenic 45.0%
GATTAAATACGCCTGCCCTT+TGG + Chr1:74490569-74490588 None:intergenic 45.0%
GCCATGATATGGAATCAAGG+TGG - Chr1:74489650-74489669 MsG0180004177.01.T01:intron 45.0%
GGAACTGGATTCACTACTCT+TGG - Chr1:74488880-74488899 MsG0180004177.01.T01:CDS 45.0%
TACTGCTAGAGACTATGACG+TGG - Chr1:74489448-74489467 MsG0180004177.01.T01:intron 45.0%
TATCGGTCCGCATAATCAGT+TGG + Chr1:74489039-74489058 None:intergenic 45.0%
TGACACCTCCACCAAATATG+TGG + Chr1:74489689-74489708 None:intergenic 45.0%
TGACAGAACAACCCATGATG+AGG + Chr1:74490286-74490305 None:intergenic 45.0%
TGTTGTTCCATTCACCACTG+AGG + Chr1:74488266-74488285 None:intergenic 45.0%
! ACCGATATGTTTCTGCTGGA+AGG - Chr1:74489052-74489071 MsG0180004177.01.T01:CDS 45.0%
! ATCATGGGTTGTTCTGTCAC+TGG - Chr1:74490287-74490306 MsG0180004177.01.T01:CDS 45.0%
!! AGCCTGCTGATTTGTATGAC+CGG - Chr1:74488830-74488849 MsG0180004177.01.T01:intron 45.0%
!! TACATGTGAGTGGTGCTGAT+TGG + Chr1:74488305-74488324 None:intergenic 45.0%
AGGAGGAGCCACATATTTGG+TGG - Chr1:74489678-74489697 MsG0180004177.01.T01:intron 50.0%
ATGCGAGTTGTGGATGTTGG+AGG - Chr1:74488856-74488875 MsG0180004177.01.T01:intron 50.0%
ATGGAATCAAGGTGGAGGAC+AGG - Chr1:74489658-74489677 MsG0180004177.01.T01:intron 50.0%
ATGTCTTCAGTCCAGTGACC+TGG + Chr1:74488793-74488812 None:intergenic 50.0%
CAAAATGGTATCGCGGTGTG+CGG - Chr1:74490252-74490271 MsG0180004177.01.T01:CDS 50.0%
CATCCACAACTCGCATTCTC+CGG + Chr1:74488852-74488871 None:intergenic 50.0%
CATGTGGATGCTCTTCCCTA+AGG - Chr1:74490163-74490182 MsG0180004177.01.T01:CDS 50.0%
CTCCGGTCATACAAATCAGC+AGG + Chr1:74488835-74488854 None:intergenic 50.0%
GACAGGAGGAGCCACATATT+TGG - Chr1:74489675-74489694 MsG0180004177.01.T01:intron 50.0%
GCTGGCTAAGGCTAAGAAGA+AGG - Chr1:74488960-74488979 MsG0180004177.01.T01:CDS 50.0%
GCTTCTTTAATGCCACGCTG+TGG + Chr1:74490059-74490078 None:intergenic 50.0%
GGAGGCAAAGCGTGCATTAT+AGG - Chr1:74490098-74490117 MsG0180004177.01.T01:intron 50.0%
GTAGCTTGGTCCTAAGGTAG+AGG - Chr1:74490427-74490446 MsG0180004177.01.T01:CDS 50.0%
GTCTTTAGTGTGGTGGCCAA+TGG - Chr1:74489628-74489647 MsG0180004177.01.T01:intron 50.0%
TGATCAGTCTCCTCATCAGC+TGG - Chr1:74488942-74488961 MsG0180004177.01.T01:CDS 50.0%
TTAATGCCACGCTGTGGATC+AGG + Chr1:74490053-74490072 None:intergenic 50.0%
! AGGAGCCACATATTTGGTGG+AGG - Chr1:74489681-74489700 MsG0180004177.01.T01:intron 50.0%
!! GCCTGCCCTTTGGAACAATT+TGG + Chr1:74490559-74490578 None:intergenic 50.0%
!! TTAGCCTTAGCCAGCTGATG+AGG + Chr1:74488955-74488974 None:intergenic 50.0%
AGGCTGAGAAGAAGGCCTTG+CGG + Chr1:74488695-74488714 None:intergenic 55.0%
AGGGGAGAGTCGCCTGATAA+AGG + Chr1:74490320-74490339 None:intergenic 55.0%
CGAGTTGTGGATGTTGGAGG+AGG - Chr1:74488859-74488878 MsG0180004177.01.T01:intron 55.0%
GAATCAAGGTGGAGGACAGG+AGG - Chr1:74489661-74489680 MsG0180004177.01.T01:intron 55.0%
GATGCAGCATCTCATCCGCA+AGG - Chr1:74488677-74488696 MsG0180004177.01.T01:CDS 55.0%
GGTGGCCAATGGCCATGATA+TGG - Chr1:74489639-74489658 MsG0180004177.01.T01:intron 55.0%
GTCTCCTCATCAGCTGGCTA+AGG - Chr1:74488948-74488967 MsG0180004177.01.T01:CDS 55.0%
GTGGATGCTCTTCCCTAAGG+AGG - Chr1:74490166-74490185 MsG0180004177.01.T01:CDS 55.0%
GTGGATGTTGGAGGAGGAAC+TGG - Chr1:74488865-74488884 MsG0180004177.01.T01:intron 55.0%
TGACCGGAGAATGCGAGTTG+TGG - Chr1:74488846-74488865 MsG0180004177.01.T01:intron 55.0%
! CGCACACCGCGATACCATTT+TGG + Chr1:74490254-74490273 None:intergenic 55.0%
! GCGGACCGATATGTTTCTGC+TGG - Chr1:74489048-74489067 MsG0180004177.01.T01:CDS 55.0%
AATGGTATCGCGGTGTGCGG+CGG - Chr1:74490255-74490274 MsG0180004177.01.T01:CDS 60.0%
ATCAGGCGACTCTCCCCTTC+AGG - Chr1:74490322-74490341 MsG0180004177.01.T01:CDS 60.0%
! TACTGGCCTGATCCACAGCG+TGG - Chr1:74490044-74490063 MsG0180004177.01.T01:intron 60.0%
CGGCGGCACGGCCTCATCAT+GGG - Chr1:74490272-74490291 MsG0180004177.01.T01:CDS 70.0%
TATCGCGGTGTGCGGCGGCA+CGG - Chr1:74490260-74490279 MsG0180004177.01.T01:CDS 70.0%
GCGGCGGCACGGCCTCATCA+TGG - Chr1:74490271-74490290 MsG0180004177.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 74488235 74490984 74488235 ID=MsG0180004177.01;Name=MsG0180004177.01
Chr1 mRNA 74488235 74490984 74488235 ID=MsG0180004177.01.T01;Parent=MsG0180004177.01;Name=MsG0180004177.01.T01;_AED=0.47;_eAED=0.47;_QI=279|1|1|1|1|1|3|398|340
Chr1 exon 74488235 74488788 74488235 ID=MsG0180004177.01.T01:exon:31589;Parent=MsG0180004177.01.T01
Chr1 exon 74488876 74489182 74488876 ID=MsG0180004177.01.T01:exon:31588;Parent=MsG0180004177.01.T01
Chr1 exon 74490146 74490984 74490146 ID=MsG0180004177.01.T01:exon:31587;Parent=MsG0180004177.01.T01
Chr1 five_prime_UTR 74490706 74490984 74490706 ID=MsG0180004177.01.T01:five_prime_utr;Parent=MsG0180004177.01.T01
Chr1 CDS 74490146 74490705 74490146 ID=MsG0180004177.01.T01:cds;Parent=MsG0180004177.01.T01
Chr1 CDS 74488876 74489182 74488876 ID=MsG0180004177.01.T01:cds;Parent=MsG0180004177.01.T01
Chr1 CDS 74488633 74488788 74488633 ID=MsG0180004177.01.T01:cds;Parent=MsG0180004177.01.T01
Chr1 three_prime_UTR 74488235 74488632 74488235 ID=MsG0180004177.01.T01:three_prime_utr;Parent=MsG0180004177.01.T01
Gene Sequence

>MsG0180004177.01.T01

ATGGCCTCCTTAATGCTTAGTGGTGCTGAAAATACAAAGCTTATTAATAGCATAGTTCCATCTGGATTAGGTTCTGTGAGTCTTAACTTTCACAAGAAGTGTTTCATCAGAAATAATGTAGTTTCATATGGTAACAAATACGGTGCTAGAAACTTGACAGCGCGATGCAGCATCTCATCCGCAAGGCCTTCTTCTCAGCCTAGATTCATCCAACACAAGAAAGAAGCATTTTGGTTTTACAGGTTTTTGTCTATTGTGTATGATCATATAATAAATCCAGGTCACTGGACTGAAGACATGAGAGATGATGCACTTGAGCCTGCTGATTTGTATGACCGGAGAATGCGAGTTGTGGATGTTGGAGGAGGAACTGGATTCACTACTCTTGGTATAGTGAAGCATGTTGATGCTAAAAATGTTACAATTCTTGATCAGTCTCCTCATCAGCTGGCTAAGGCTAAGAAGAAGGAAGCATTGAAAGAATGTAAGATAATTGAAGGTGATGCAGAAGATCTTCCATTTCCAACTGATTATGCGGACCGATATGTTTCTGCTGGAAGTATTGAATACTGGCCTGATCCACAGCGTGGCATTAAAGAAGCATATAGAGTTCTGAAAATAGGAGGCAAAGCGTGCATTATAGGTCCTGTATACCCAACATTTTGGTTGTCTCAATTCTTTGCAGACATGTGGATGCTCTTCCCTAAGGAGGAAGAGTATATTGAATGGTTTAAAAAGGCTGGTTTCAAAGATGTCAAGCTGAAAAGAATAGGTCCAAAATGGTATCGCGGTGTGCGGCGGCACGGCCTCATCATGGGTTGTTCTGTCACTGGTGTCAAACCTTTATCAGGCGACTCTCCCCTTCAGCTTGGTCCTAAGGTAGAGGATGTACAGAAGCCTGTAAATCCATTGGTGTTTCTCTCAAGGCTCATTCTTGGTACAATTGCAGCCACTTACTATGTACTAGTTCCAATTTACATGTGGCTTAAAGACCAAATTGTTCCAAAGGGCAGGCGTATTTAA

Protein sequence

>MsG0180004177.01.T01

MASLMLSGAENTKLINSIVPSGLGSVSLNFHKKCFIRNNVVSYGNKYGARNLTARCSISSARPSSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLYDRRMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKKKEALKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVYPTFWLSQFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVQKPVNPLVFLSRLILGTIAATYYVLVPIYMWLKDQIVPKGRRI*