Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004366.01.T01 | XP_013468863.1 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 1.39E-77 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004366.01.T01 | Q8LC95 | 31.776 | 107 | 71 | 2 | 9 | 114 | 6 | 111 | 1.86E-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004366.01.T01 | I3SLL8 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.63e-78 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049008.01 | MsG0180004366.01 | 0.830520 | 2.804821e-55 | 2.962057e-52 |
| MsG0180004366.01 | MsG0280007054.01 | 0.813310 | 2.730462e-51 | 1.776920e-48 |
| MsG0180004366.01 | MsG0380011846.01 | 0.825273 | 5.127533e-54 | 4.651884e-51 |
| MsG0180004366.01 | MsG0380017079.01 | 0.823663 | 1.227133e-53 | 1.063423e-50 |
| MsG0180004366.01 | MsG0380017588.01 | 0.802501 | 5.444965e-49 | 2.671445e-46 |
| MsG0180004366.01 | MsG0480022923.01 | 0.812500 | 4.108531e-51 | 2.616637e-48 |
| MsG0180004366.01 | MsG0580026446.01 | 0.835663 | 1.472281e-56 | 1.812487e-53 |
| MsG0180004366.01 | MsG0580027854.01 | 0.839423 | 1.599008e-57 | 2.207257e-54 |
| MsG0180004366.01 | MsG0580028364.01 | 0.844869 | 5.788602e-59 | 9.472283e-56 |
| MsG0180004366.01 | MsG0780040978.01 | 0.869625 | 2.691657e-66 | 1.016844e-62 |
| MsG0180004366.01 | MsG0780040990.01 | 0.875635 | 2.637610e-68 | 1.240785e-64 |
| MsG0180004366.01 | MsG0780041282.01 | 0.810521 | 1.106021e-50 | 6.681585e-48 |
| MsG0180004366.01 | MsG0780041354.01 | 0.841260 | 5.291940e-58 | 7.732215e-55 |
| MsG0180004366.01 | MsG0880045949.01 | 0.826153 | 3.171933e-54 | 2.950601e-51 |
| MsG0180004366.01 | MsG0880045963.01 | 0.848210 | 7.086660e-60 | 1.290800e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004366.01.T01 | MTR_1g077790 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 1.68e-81 | 239 |
| MsG0180004366.01.T01 | MTR_6g022170 | 33.898 | 118 | 66 | 2 | 28 | 145 | 33 | 138 | 1.45e-20 | 83.2 |
| MsG0180004366.01.T01 | MTR_4g111640 | 33.028 | 109 | 70 | 2 | 26 | 133 | 29 | 135 | 1.44e-16 | 73.2 |
| MsG0180004366.01.T01 | MTR_2g090580 | 32.692 | 104 | 67 | 1 | 26 | 129 | 24 | 124 | 1.48e-15 | 70.9 |
| MsG0180004366.01.T01 | MTR_4g081100 | 35.870 | 92 | 58 | 1 | 23 | 114 | 26 | 116 | 3.81e-15 | 70.5 |
| MsG0180004366.01.T01 | MTR_4g077787 | 32.110 | 109 | 71 | 2 | 26 | 133 | 29 | 135 | 4.53e-15 | 69.3 |
| MsG0180004366.01.T01 | MTR_1g104800 | 34.906 | 106 | 63 | 2 | 9 | 114 | 8 | 107 | 4.69e-15 | 69.3 |
| MsG0180004366.01.T01 | MTR_4g078410 | 35.354 | 99 | 61 | 1 | 28 | 126 | 24 | 119 | 7.40e-15 | 68.9 |
| MsG0180004366.01.T01 | MTR_1g014120 | 31.373 | 102 | 69 | 1 | 32 | 133 | 29 | 129 | 9.90e-15 | 68.6 |
| MsG0180004366.01.T01 | MTR_2g101300 | 34.862 | 109 | 66 | 2 | 6 | 114 | 7 | 110 | 1.26e-14 | 68.2 |
| MsG0180004366.01.T01 | MTR_8g086360 | 37.143 | 105 | 62 | 2 | 13 | 116 | 7 | 108 | 1.37e-14 | 68.2 |
| MsG0180004366.01.T01 | MTR_2g083250 | 37.634 | 93 | 57 | 1 | 23 | 114 | 20 | 112 | 8.55e-14 | 67.4 |
| MsG0180004366.01.T01 | MTR_2g090575 | 38.462 | 91 | 53 | 1 | 26 | 116 | 22 | 109 | 1.26e-13 | 67.4 |
| MsG0180004366.01.T01 | MTR_8g095020 | 39.773 | 88 | 51 | 1 | 27 | 114 | 23 | 108 | 1.35e-13 | 67.0 |
| MsG0180004366.01.T01 | MTR_3g105930 | 30.612 | 98 | 67 | 1 | 32 | 129 | 31 | 127 | 7.50e-13 | 63.5 |
| MsG0180004366.01.T01 | MTR_4g112310 | 33.333 | 87 | 56 | 1 | 47 | 133 | 1 | 85 | 1.18e-11 | 59.3 |
| MsG0180004366.01.T01 | MTR_8g094990 | 29.197 | 137 | 91 | 3 | 13 | 145 | 8 | 142 | 2.13e-11 | 60.8 |
| MsG0180004366.01.T01 | MTR_2g079030 | 27.907 | 129 | 87 | 3 | 26 | 153 | 22 | 145 | 3.59e-11 | 60.8 |
| MsG0180004366.01.T01 | MTR_8g099220 | 35.802 | 81 | 50 | 1 | 31 | 111 | 31 | 109 | 3.75e-11 | 57.8 |
| MsG0180004366.01.T01 | MTR_8g095013 | 28.966 | 145 | 95 | 4 | 13 | 151 | 8 | 150 | 4.98e-11 | 59.7 |
| MsG0180004366.01.T01 | MTR_5g006040 | 35.294 | 85 | 52 | 1 | 30 | 114 | 27 | 108 | 6.72e-11 | 58.2 |
| MsG0180004366.01.T01 | MTR_8g463180 | 32.222 | 90 | 58 | 1 | 26 | 115 | 21 | 107 | 7.42e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004366.01.T01 | AT1G64640 | 67.391 | 92 | 28 | 1 | 23 | 114 | 27 | 116 | 1.66e-40 | 135 |
| MsG0180004366.01.T01 | AT3G20570 | 35.345 | 116 | 73 | 1 | 14 | 129 | 15 | 128 | 3.34e-23 | 91.3 |
| MsG0180004366.01.T01 | AT1G79800 | 38.384 | 99 | 59 | 1 | 28 | 126 | 33 | 129 | 1.69e-17 | 75.9 |
| MsG0180004366.01.T01 | AT1G48940 | 33.333 | 111 | 71 | 2 | 24 | 133 | 21 | 129 | 8.28e-17 | 73.9 |
| MsG0180004366.01.T01 | AT4G28365 | 36.364 | 88 | 53 | 2 | 27 | 114 | 27 | 111 | 1.14e-14 | 68.6 |
| MsG0180004366.01.T01 | AT3G18590 | 36.364 | 88 | 53 | 2 | 28 | 114 | 26 | 111 | 2.27e-14 | 67.8 |
| MsG0180004366.01.T01 | AT5G25090 | 31.776 | 107 | 71 | 2 | 9 | 114 | 6 | 111 | 1.90e-13 | 65.1 |
| MsG0180004366.01.T01 | AT2G23990 | 38.554 | 83 | 50 | 1 | 32 | 114 | 31 | 112 | 2.39e-13 | 65.1 |
| MsG0180004366.01.T01 | AT2G25060 | 33.010 | 103 | 65 | 2 | 12 | 114 | 18 | 116 | 3.18e-13 | 64.3 |
| MsG0180004366.01.T01 | AT5G57920 | 32.653 | 98 | 65 | 1 | 32 | 129 | 26 | 122 | 3.33e-13 | 64.3 |
| MsG0180004366.01.T01 | AT5G57920 | 36.905 | 84 | 52 | 1 | 32 | 115 | 59 | 141 | 3.52e-13 | 65.1 |
| MsG0180004366.01.T01 | AT5G57920 | 36.905 | 84 | 52 | 1 | 32 | 115 | 27 | 109 | 3.61e-13 | 64.3 |
| MsG0180004366.01.T01 | AT4G30590 | 34.940 | 83 | 53 | 1 | 32 | 114 | 32 | 113 | 7.00e-13 | 63.5 |
| MsG0180004366.01.T01 | AT4G27520 | 33.981 | 103 | 65 | 1 | 12 | 114 | 14 | 113 | 9.37e-13 | 65.1 |
| MsG0180004366.01.T01 | AT4G32490 | 32.955 | 88 | 56 | 1 | 27 | 114 | 29 | 113 | 1.41e-12 | 63.5 |
| MsG0180004366.01.T01 | AT5G14345 | 32.673 | 101 | 62 | 2 | 14 | 114 | 5 | 99 | 2.76e-12 | 61.2 |
| MsG0180004366.01.T01 | AT4G31840 | 35.455 | 110 | 64 | 4 | 11 | 114 | 4 | 112 | 4.20e-12 | 61.2 |
| MsG0180004366.01.T01 | AT5G26330 | 38.372 | 86 | 50 | 2 | 29 | 114 | 24 | 106 | 7.00e-12 | 60.8 |
| MsG0180004366.01.T01 | AT5G53870 | 30.894 | 123 | 77 | 3 | 8 | 129 | 12 | 127 | 7.70e-12 | 62.4 |
| MsG0180004366.01.T01 | AT5G53870 | 30.894 | 123 | 77 | 3 | 8 | 129 | 12 | 127 | 8.70e-12 | 62.4 |
| MsG0180004366.01.T01 | AT2G32300 | 28.070 | 114 | 74 | 2 | 1 | 114 | 31 | 136 | 7.08e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATGAAAATTTGAAATT+AGG | 0.209944 | 1:+76995431 | None:intergenic |
| AAGGGTGAAGTTGTGAAATT+TGG | 0.223732 | 1:+76995909 | None:intergenic |
| CATATATCTGTTGGAGGAAT+TGG | 0.263666 | 1:-76995568 | MsG0180004366.01.T01:CDS |
| CCATTGTTCATAAACAATAT+TGG | 0.281321 | 1:+76995675 | None:intergenic |
| AAAACACTTTGGTTTGGATT+TGG | 0.318460 | 1:+76996010 | None:intergenic |
| ATCCACAAGTCTATGCTAAA+TGG | 0.353275 | 1:-76995933 | MsG0180004366.01.T01:CDS |
| CAGTCATAACAACTGGTTCT+TGG | 0.354742 | 1:-76996058 | MsG0180004366.01.T01:CDS |
| GTTGTTATGACTGGCCATTT+TGG | 0.356548 | 1:+76996068 | None:intergenic |
| GAAAATAATAGAAACCAAAA+TGG | 0.373724 | 1:-76996082 | MsG0180004366.01.T01:exon |
| AATGAAATACTACTTTGTAT+TGG | 0.388385 | 1:-76995143 | None:intergenic |
| TCTCAATCTGTAATTCTTTG+TGG | 0.390988 | 1:-76995279 | MsG0180004366.01.T01:three_prime_UTR |
| TTAGATCTCCAACTTTGAAT+TGG | 0.398002 | 1:+76995983 | None:intergenic |
| GGTAGCAAAACACTTTGGTT+TGG | 0.401653 | 1:+76996004 | None:intergenic |
| CCCTCTTCACAAACAGTGTT+GGG | 0.402700 | 1:-76995493 | MsG0180004366.01.T01:CDS |
| AGTTGGAGATCTAAATGCTT+GGG | 0.404972 | 1:-76995974 | MsG0180004366.01.T01:CDS |
| CTATTTCACAAGTGGAGAAA+TGG | 0.411705 | 1:-76995616 | MsG0180004366.01.T01:CDS |
| CCCAACACTGTTTGTGAAGA+GGG | 0.415369 | 1:+76995493 | None:intergenic |
| TTTGATGAAGAAGGAGCTAC+TGG | 0.443782 | 1:+76995463 | None:intergenic |
| CAAAAGATTCATATATCTGT+TGG | 0.454335 | 1:-76995577 | MsG0180004366.01.T01:CDS |
| TGAGGTGAATTTGATGAAGA+AGG | 0.457613 | 1:+76995454 | None:intergenic |
| AAATTTCACAACTTCACCCT+TGG | 0.467456 | 1:-76995907 | MsG0180004366.01.T01:CDS |
| AAATGGCCAGTCATAACAAC+TGG | 0.486950 | 1:-76996065 | MsG0180004366.01.T01:CDS |
| AACAAAGTATTGCATAATCA+AGG | 0.490198 | 1:+76995232 | None:intergenic |
| ATCAATGAATCTTGACTTGG+TGG | 0.501009 | 1:+76995741 | None:intergenic |
| ACCCTCTTCACAAACAGTGT+TGG | 0.516827 | 1:-76995494 | MsG0180004366.01.T01:CDS |
| TGTGAAGAGGGTGCAGATGC+AGG | 0.517498 | 1:+76995505 | None:intergenic |
| TGGCTTTAATGTAAAAGCAA+AGG | 0.519119 | 1:-76995375 | MsG0180004366.01.T01:three_prime_UTR |
| GACCATTTAGCATAGACTTG+TGG | 0.528971 | 1:+76995931 | None:intergenic |
| AATGTTGATGCTGAAGCTAA+TGG | 0.532427 | 1:-76995544 | MsG0180004366.01.T01:CDS |
| GAATTGGTAGCAAAACACTT+TGG | 0.533380 | 1:+76995999 | None:intergenic |
| CCAATATTGTTTATGAACAA+TGG | 0.534060 | 1:-76995675 | MsG0180004366.01.T01:CDS |
| GATGCAGGCAATGAAGAACT+TGG | 0.536171 | 1:+76995520 | None:intergenic |
| AAGTTGGAGATCTAAATGCT+TGG | 0.539050 | 1:-76995975 | MsG0180004366.01.T01:CDS |
| GGTGATTTCTATTTCACAAG+TGG | 0.546187 | 1:-76995624 | MsG0180004366.01.T01:CDS |
| AAGATTCATATATCTGTTGG+AGG | 0.558686 | 1:-76995574 | MsG0180004366.01.T01:CDS |
| GACTTGTGGATTTGCTGAGG+TGG | 0.563923 | 1:+76995945 | None:intergenic |
| CAAGAACCAGTTGTTATGAC+TGG | 0.565931 | 1:+76996059 | None:intergenic |
| ACTTACAAAGTGAGTCTCCA+AGG | 0.579525 | 1:+76995890 | None:intergenic |
| TGAAAATTTGAAATTAGGTG+AGG | 0.580254 | 1:+76995436 | None:intergenic |
| TTGTTTAACATAACATCACA+TGG | 0.586899 | 1:-76995645 | MsG0180004366.01.T01:CDS |
| TGAATCAATGAATCTTGACT+TGG | 0.587776 | 1:+76995738 | None:intergenic |
| ACTTGTGGATTTGCTGAGGT+GGG | 0.610232 | 1:+76995946 | None:intergenic |
| GTTGGAGATCTAAATGCTTG+GGG | 0.615224 | 1:-76995973 | MsG0180004366.01.T01:CDS |
| TCCCAACACTGTTTGTGAAG+AGG | 0.627353 | 1:+76995492 | None:intergenic |
| ATAGACTTGTGGATTTGCTG+AGG | 0.672234 | 1:+76995942 | None:intergenic |
| CTTACAAAGTGAGTCTCCAA+GGG | 0.672775 | 1:+76995891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAATAAAAACAGT+AGG | + | Chr1:76996096-76996115 | None:intergenic | 15.0% |
| !! | AAAACAAAATAAAAACAGTA+GGG | + | Chr1:76996095-76996114 | None:intergenic | 15.0% |
| !!! | AGTATTTCATTTCAAATTTT+TGG | + | Chr1:76996123-76996142 | None:intergenic | 15.0% |
| !!! | GTATTTCATTTCAAATTTTT+GGG | + | Chr1:76996122-76996141 | None:intergenic | 15.0% |
| !!! | TATTTCATTTCAAATTTTTG+GGG | + | Chr1:76996121-76996140 | None:intergenic | 15.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | Chr1:76995185-76995204 | None:intergenic | 15.0% |
| !! | AAACAAAATAAAAACAGTAG+GGG | + | Chr1:76996094-76996113 | None:intergenic | 20.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | Chr1:76995193-76995212 | MsG0180004366.01.T01:three_prime_UTR | 20.0% |
| !! | GTAACACTAAAATGAAATTA+AGG | + | Chr1:76995436-76995455 | None:intergenic | 20.0% |
| !! | GTTGGAATATATTGTATATA+TGG | + | Chr1:76995411-76995430 | None:intergenic | 20.0% |
| !! | TAAAATGAAATTAAGGAAGT+TGG | + | Chr1:76995429-76995448 | None:intergenic | 20.0% |
| !!! | AATTTTCATGTGTTCATTAT+TGG | - | Chr1:76995854-76995873 | MsG0180004366.01.T01:intron | 20.0% |
| !!! | ACACATGAAAATTTGAAATT+AGG | + | Chr1:76995847-76995866 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | Chr1:76995691-76995710 | None:intergenic | 20.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | Chr1:76995698-76995717 | MsG0180004366.01.T01:CDS | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | Chr1:76995600-76995619 | MsG0180004366.01.T01:CDS | 25.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | Chr1:76995603-76995622 | None:intergenic | 25.0% |
| ! | TAGTGTTACAAAACTCAAAA+GGG | - | Chr1:76995447-76995466 | MsG0180004366.01.T01:three_prime_UTR | 25.0% |
| ! | TTAGTGTTACAAAACTCAAA+AGG | - | Chr1:76995446-76995465 | MsG0180004366.01.T01:three_prime_UTR | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | Chr1:76995630-76995649 | MsG0180004366.01.T01:CDS | 25.0% |
| !! | TGAAAATTTGAAATTAGGTG+AGG | + | Chr1:76995842-76995861 | None:intergenic | 25.0% |
| !!! | AACAAAGTATTGCATAATCA+AGG | + | Chr1:76996046-76996065 | None:intergenic | 25.0% |
| AAGATTCATATATCTGTTGG+AGG | - | Chr1:76995701-76995720 | MsG0180004366.01.T01:CDS | 30.0% | |
| TCTCAATCTGTAATTCTTTG+TGG | - | Chr1:76995996-76996015 | MsG0180004366.01.T01:CDS | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | Chr1:76995540-76995559 | None:intergenic | 30.0% | |
| TTAGATCTCCAACTTTGAAT+TGG | + | Chr1:76995295-76995314 | None:intergenic | 30.0% | |
| ! | TCTCATATATGCACTGTTTT+TGG | - | Chr1:76995880-76995899 | MsG0180004366.01.T01:intron | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | Chr1:76995284-76995303 | MsG0180004366.01.T01:three_prime_UTR | 30.0% |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | Chr1:76995268-76995287 | None:intergenic | 30.0% |
| !! | TGGCTTTAATGTAAAAGCAA+AGG | - | Chr1:76995900-76995919 | MsG0180004366.01.T01:CDS | 30.0% |
| AAATTTCACAACTTCACCCT+TGG | - | Chr1:76995368-76995387 | MsG0180004366.01.T01:three_prime_UTR | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | Chr1:76995369-76995388 | None:intergenic | 35.0% | |
| AAGTTGGAGATCTAAATGCT+TGG | - | Chr1:76995300-76995319 | MsG0180004366.01.T01:three_prime_UTR | 35.0% | |
| AATAAAAAGTCCTCGTTGAG+GGG | - | Chr1:76995157-76995176 | MsG0180004366.01.T01:three_prime_UTR | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | Chr1:76995731-76995750 | MsG0180004366.01.T01:CDS | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | Chr1:76995301-76995320 | MsG0180004366.01.T01:three_prime_UTR | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | Chr1:76995342-76995361 | MsG0180004366.01.T01:three_prime_UTR | 35.0% | |
| CAATAAAAAGTCCTCGTTGA+GGG | - | Chr1:76995156-76995175 | MsG0180004366.01.T01:three_prime_UTR | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | Chr1:76995707-76995726 | MsG0180004366.01.T01:CDS | 35.0% | |
| CTATTTCACAAGTGGAGAAA+TGG | - | Chr1:76995659-76995678 | MsG0180004366.01.T01:CDS | 35.0% | |
| GGTGATTTCTATTTCACAAG+TGG | - | Chr1:76995651-76995670 | MsG0180004366.01.T01:CDS | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | Chr1:76995824-76995843 | None:intergenic | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | Chr1:76995279-76995298 | None:intergenic | 35.0% |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | Chr1:76995537-76995556 | None:intergenic | 35.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | Chr1:76995210-76995229 | MsG0180004366.01.T01:three_prime_UTR | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | Chr1:76995388-76995407 | None:intergenic | 40.0% | |
| ATAAAAAGTCCTCGTTGAGG+GGG | - | Chr1:76995158-76995177 | MsG0180004366.01.T01:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | Chr1:76995219-76995238 | None:intergenic | 40.0% | |
| CCAATAAAAAGTCCTCGTTG+AGG | - | Chr1:76995155-76995174 | MsG0180004366.01.T01:three_prime_UTR | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | Chr1:76995387-76995406 | None:intergenic | 40.0% | |
| GACCATTTAGCATAGACTTG+TGG | + | Chr1:76995347-76995366 | None:intergenic | 40.0% | |
| GGTAGCAAAACACTTTGGTT+TGG | + | Chr1:76995274-76995293 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | Chr1:76995302-76995321 | MsG0180004366.01.T01:three_prime_UTR | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | Chr1:76995815-76995834 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | Chr1:76995217-76995236 | MsG0180004366.01.T01:three_prime_UTR | 40.0% |
| ! | CCTCAACGAGGACTTTTTAT+TGG | + | Chr1:76995158-76995177 | None:intergenic | 40.0% |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | Chr1:76995336-76995355 | None:intergenic | 40.0% |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | Chr1:76995210-76995229 | None:intergenic | 40.0% |
| ACCCTCTTCACAAACAGTGT+TGG | - | Chr1:76995781-76995800 | MsG0180004366.01.T01:intron | 45.0% | |
| CCCAACACTGTTTGTGAAGA+GGG | + | Chr1:76995785-76995804 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+GGG | - | Chr1:76995782-76995801 | MsG0180004366.01.T01:intron | 45.0% | |
| GATGCAGGCAATGAAGAACT+TGG | + | Chr1:76995758-76995777 | None:intergenic | 45.0% | |
| TCCCAACACTGTTTGTGAAG+AGG | + | Chr1:76995786-76995805 | None:intergenic | 45.0% | |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | Chr1:76995332-76995351 | None:intergenic | 45.0% |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | Chr1:76995333-76995352 | None:intergenic | 50.0% |
| ! | GATTTAGGACCCCCTCAACG+AGG | + | Chr1:76995170-76995189 | None:intergenic | 55.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | Chr1:76995773-76995792 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 76995144 | 76996153 | 76995144 | ID=MsG0180004366.01;Name=MsG0180004366.01 |
| Chr1 | mRNA | 76995144 | 76996153 | 76995144 | ID=MsG0180004366.01.T01;Parent=MsG0180004366.01;Name=MsG0180004366.01.T01;_AED=0.49;_eAED=0.49;_QI=68|1|1|1|0|0|2|335|161 |
| Chr1 | exon | 76995144 | 76995774 | 76995144 | ID=MsG0180004366.01.T01:exon:45029;Parent=MsG0180004366.01.T01 |
| Chr1 | exon | 76995896 | 76996153 | 76995896 | ID=MsG0180004366.01.T01:exon:45028;Parent=MsG0180004366.01.T01 |
| Chr1 | five_prime_UTR | 76996086 | 76996153 | 76996086 | ID=MsG0180004366.01.T01:five_prime_utr;Parent=MsG0180004366.01.T01 |
| Chr1 | CDS | 76995896 | 76996085 | 76995896 | ID=MsG0180004366.01.T01:cds;Parent=MsG0180004366.01.T01 |
| Chr1 | CDS | 76995479 | 76995774 | 76995479 | ID=MsG0180004366.01.T01:cds;Parent=MsG0180004366.01.T01 |
| Chr1 | three_prime_UTR | 76995144 | 76995478 | 76995144 | ID=MsG0180004366.01.T01:three_prime_utr;Parent=MsG0180004366.01.T01 |
| Gene Sequence |
| Protein sequence |
