AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017588.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017588.01.T01 MTR_3g109450 97.612 712 12 2 1 707 1 712 0.0 1427
MsG0380017588.01.T01 MTR_2g102050 54.690 565 224 5 167 707 204 760 0.0 585
MsG0380017588.01.T01 MTR_4g012430 55.224 402 168 4 264 660 117 511 6.51e-146 436
MsG0380017588.01.T01 MTR_4g012430 64.407 59 21 0 1 59 1 59 2.09e-13 73.6
MsG0380017588.01.T01 MTR_8g006850 28.634 454 289 9 272 701 279 721 9.23e-54 197
MsG0380017588.01.T01 MTR_8g006850 55.932 59 26 0 1 59 1 59 3.85e-14 76.6
MsG0380017588.01.T01 MTR_7g081705 28.728 456 290 6 266 701 401 841 3.53e-52 194
MsG0380017588.01.T01 MTR_7g081705 57.627 59 25 0 1 59 1 59 2.22e-14 77.4
MsG0380017588.01.T01 MTR_5g022530 29.688 448 269 8 272 695 206 631 5.31e-52 191
MsG0380017588.01.T01 MTR_1g112850 24.215 764 494 16 1 706 1 737 1.22e-49 186
MsG0380017588.01.T01 MTR_2g048360 29.247 465 300 9 250 697 179 631 5.83e-46 174
MsG0380017588.01.T01 MTR_8g091250 26.308 669 369 22 1 591 1 623 1.82e-41 161
MsG0380017588.01.T01 MTR_4g127620 28.916 332 213 8 272 586 337 662 1.12e-33 138
MsG0380017588.01.T01 MTR_4g127620 36.134 119 70 3 1 113 1 119 7.88e-12 69.3
MsG0380017588.01.T01 MTR_3g088190 24.229 454 306 7 272 696 456 900 2.69e-33 137
MsG0380017588.01.T01 MTR_3g078830 27.749 382 216 10 257 585 307 681 3.23e-33 137
MsG0380017588.01.T01 MTR_5g087740 27.427 412 217 11 270 629 308 689 7.05e-31 129
MsG0380017588.01.T01 MTR_5g098980 25.537 419 274 8 283 692 367 756 2.04e-30 128
MsG0380017588.01.T01 MTR_3g115120 22.779 439 288 10 269 695 280 679 8.30e-26 113
MsG0380017588.01.T01 MTR_2g036920 26.724 348 210 9 270 583 503 839 2.31e-25 112
MsG0380017588.01.T01 MTR_2g036920 50.847 59 29 0 1 59 1 59 2.66e-12 70.9
MsG0380017588.01.T01 MTR_2g036920 26.724 348 210 9 270 583 474 810 2.71e-25 112
MsG0380017588.01.T01 MTR_2g036920 50.847 59 29 0 1 59 1 59 2.58e-12 70.9
MsG0380017588.01.T01 MTR_3g096950 23.362 351 253 4 353 696 434 775 9.39e-21 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017588.01.T01 AT5G25590 54.789 783 265 14 1 706 1 771 0.0 730
MsG0380017588.01.T01 AT1G52320 63.122 442 159 3 257 695 10 450 0.0 567
MsG0380017588.01.T01 AT1G52320 63.122 442 159 3 257 695 10 450 0.0 567
MsG0380017588.01.T01 AT1G02110 28.753 473 296 7 249 701 250 701 1.10e-57 208
MsG0380017588.01.T01 AT1G02110 52.542 59 28 0 1 59 1 59 5.78e-13 72.8
MsG0380017588.01.T01 AT3G51290 29.955 444 283 5 272 703 202 629 4.26e-55 200
MsG0380017588.01.T01 AT3G51290 29.955 444 283 5 272 703 202 629 6.00e-55 202
MsG0380017588.01.T01 AT3G51290 29.505 444 279 6 272 703 202 623 1.56e-50 187
MsG0380017588.01.T01 AT3G60320 29.128 436 285 9 266 685 351 778 1.07e-46 178
MsG0380017588.01.T01 AT3G60320 45.946 111 56 2 1 111 1 107 7.08e-16 82.4
MsG0380017588.01.T01 AT2G27090 25.036 695 406 21 1 600 1 675 5.88e-45 172
MsG0380017588.01.T01 AT2G27090 25.036 695 406 21 1 600 1 675 5.88e-45 172
MsG0380017588.01.T01 AT4G39790 26.984 630 361 20 1 573 9 596 4.06e-42 163
MsG0380017588.01.T01 AT2G34670 28.539 445 278 10 271 695 250 674 2.48e-39 155
MsG0380017588.01.T01 AT1G21740 24.105 531 350 10 199 696 432 942 4.43e-34 140
MsG0380017588.01.T01 AT4G30130 25.299 668 390 21 1 586 1 641 7.60e-34 139
MsG0380017588.01.T01 AT4G30130 25.299 668 390 21 1 586 1 641 7.60e-34 139
MsG0380017588.01.T01 AT1G77500 25.792 442 290 7 272 696 451 871 7.69e-32 133
MsG0380017588.01.T01 AT4G35240 24.208 442 278 8 274 695 423 827 2.20e-27 119
MsG0380017588.01.T01 AT4G35240 24.208 442 278 8 274 695 423 827 2.20e-27 119
MsG0380017588.01.T01 AT4G35240 24.208 442 278 8 274 695 423 827 2.31e-27 119
MsG0380017588.01.T01 AT4G35240 24.208 442 278 8 274 695 423 827 2.31e-27 119
MsG0380017588.01.T01 AT1G20530 23.519 574 358 18 1 558 1 509 4.02e-27 117
MsG0380017588.01.T01 AT2G34670 26.940 464 259 17 158 576 121 549 7.34e-25 110
MsG0380017588.01.T01 AT2G19090 26.857 350 213 6 270 586 385 724 1.33e-24 110
MsG0380017588.01.T01 AT2G17110 25.079 315 224 3 274 576 313 627 1.79e-23 106
MsG0380017588.01.T01 AT1G52320 34.921 252 91 9 1 184 1 247 9.46e-18 88.2
MsG0380017588.01.T01 AT1G52320 34.921 252 91 9 1 184 1 247 9.46e-18 88.2
MsG0380017588.01.T01 AT5G54480 23.601 411 267 12 292 695 345 715 2.44e-17 87.0
MsG0380017588.01.T01 AT4G30130 36.508 126 77 1 351 476 398 520 1.15e-14 77.8
MsG0380017588.01.T01 AT4G30130 36.508 126 77 1 351 476 398 520 1.15e-14 77.8

Find 186 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATGGATATGGATAATA+TGG 0.114095 3:-98176571 MsG0380017588.01.T01:CDS
GGGCTTGGATTGGTGGATTT+TGG 0.116448 3:+98174490 None:intergenic
GGCTTGGGATTATTTCTTTA+TGG 0.126467 3:-98176586 MsG0380017588.01.T01:CDS
AAACTTGTTGCTCTTGTTAT+TGG 0.151747 3:-98175360 MsG0380017588.01.T01:CDS
GGATTATTTCTTTATGGATA+TGG 0.176860 3:-98176580 MsG0380017588.01.T01:CDS
CAAATTGTGACTCCCATTCT+TGG 0.206075 3:+98174628 None:intergenic
GTTCTAACCATCCTTAATTA+TGG 0.212748 3:-98173832 MsG0380017588.01.T01:three_prime_UTR
AGAGAAGCAGGTGAGAAATT+AGG 0.229302 3:+98176822 None:intergenic
GCGCCACCTTCTCCTCTATC+TGG 0.241574 3:-98176654 MsG0380017588.01.T01:CDS
ATAACAAGAGCAACAAGTTT+TGG 0.264787 3:+98175363 None:intergenic
AAATGTGCTTTCCATAATTA+AGG 0.266395 3:+98173821 None:intergenic
TTCTAATTTCGCCGATGGTC+GGG 0.270291 3:-98176187 MsG0380017588.01.T01:CDS
GAAGAGGCGGTGGAGGAGGG+AGG 0.286829 3:+98176847 None:intergenic
AGAAACACATGCCACTGTTT+TGG 0.288622 3:-98175827 MsG0380017588.01.T01:CDS
GGTGAGAATGTTGATGTTAA+TGG 0.289655 3:-98176492 MsG0380017588.01.T01:CDS
GCCTTCGCCGCCGGTCATTC+CGG 0.299872 3:-98177005 MsG0380017588.01.T01:CDS
CCCTTCGTTGTAAATGCTTC+TGG 0.304621 3:+98174280 None:intergenic
TCCGCCTCCTCCACCGCCTT+TGG 0.313457 3:-98176877 MsG0380017588.01.T01:CDS
CTCAACTTTCTCCGGTGTCT+TGG 0.318035 3:+98176443 None:intergenic
ACAACTGAGAATCGCGAATA+TGG 0.320972 3:+98175388 None:intergenic
GGAGGAAGAGGCGGTGGAGG+AGG 0.326831 3:+98176843 None:intergenic
AACTTGTTGCTCTTGTTATT+GGG 0.330220 3:-98175359 MsG0380017588.01.T01:intron
GGAGGAAGAGATGAAGTTAA+AGG 0.341872 3:-98174364 MsG0380017588.01.T01:CDS
TGAGGTTGATGTGTATAATA+AGG 0.342260 3:-98176424 MsG0380017588.01.T01:CDS
TGAGTTTAGAAGAGCAATTA+AGG 0.371298 3:-98176328 MsG0380017588.01.T01:CDS
TCAACTTTCTCCGGTGTCTT+GGG 0.378191 3:+98176444 None:intergenic
TTAGGAGGAAGAGGCGGTGG+AGG 0.380955 3:+98176840 None:intergenic
GAACATATTCTCCCACATAT+TGG 0.386881 3:+98174770 None:intergenic
TTTGAGAGCCATGGCATAAC+CGG 0.391707 3:+98176986 None:intergenic
GCAGATTTCGCTAGCTCGTC+AGG 0.404088 3:+98174432 None:intergenic
ACGACCGCACCGTGCAGCTT+TGG 0.406384 3:-98174659 MsG0380017588.01.T01:CDS
TGATATTTCTCAAGATCATA+AGG 0.409383 3:-98174700 MsG0380017588.01.T01:CDS
ATTCTAATTTCGCCGATGGT+CGG 0.410137 3:-98176188 MsG0380017588.01.T01:CDS
AAATTAGGAGGAAGAGGCGG+TGG 0.411893 3:+98176837 None:intergenic
GACGCCGCCACCGCCTTTGC+CGG 0.411999 3:-98176622 MsG0380017588.01.T01:CDS
TCTTCCAAAGGCGGTGGAGG+AGG 0.417718 3:+98176873 None:intergenic
GAGAAATATCAAGAGATTTG+AGG 0.419497 3:+98174712 None:intergenic
GAGAACTAAGAATCTGCATA+AGG 0.420407 3:+98176289 None:intergenic
GAGGAAGAGGCGGTGGAGGA+GGG 0.421531 3:+98176844 None:intergenic
CAAGCCATGTTCTTCGAATC+CGG 0.423759 3:+98176603 None:intergenic
TGAGCTCTTCCGCGCGCTAT+CGG 0.425047 3:-98174088 MsG0380017588.01.T01:CDS
GCTCGTAACGCCTTCGCCGC+CGG 0.436376 3:-98177014 MsG0380017588.01.T01:CDS
CTAAGATGCTTGAAGCTACT+AGG 0.436626 3:-98176221 MsG0380017588.01.T01:CDS
TATGTATCAAAGTGTATGTT+TGG 0.444857 3:-98173663 MsG0380017588.01.T01:three_prime_UTR
ATCATCTCTTTCTAGATCAT+CGG 0.445892 3:+98174254 None:intergenic
GGTACCATTCTTCAAAAGCT+TGG 0.451334 3:+98174301 None:intergenic
TCTAATTTCGCCGATGGTCG+GGG 0.454232 3:-98176186 MsG0380017588.01.T01:intron
ACAAACTGCTTCTCCGAGAC+CGG 0.455691 3:+98174216 None:intergenic
TTGTTGAAGAGGTGGAAGAA+GGG 0.456126 3:-98176716 MsG0380017588.01.T01:CDS
CTTTCAGGATGGCCAATATG+TGG 0.463738 3:-98174782 MsG0380017588.01.T01:intron
TCCAAAGGCGGTGGAGGAGG+CGG 0.464614 3:+98176876 None:intergenic
GTGAGGATGCAGCTTAACTT+AGG 0.464738 3:+98173934 None:intergenic
TTCGAATCCGGCAAAGGCGG+TGG 0.466283 3:+98176615 None:intergenic
GATAGCGCGCGGAAGAGCTC+AGG 0.466453 3:+98174090 None:intergenic
AAGATCGGCGGTGGAATTAG+TGG 0.472783 3:-98176750 MsG0380017588.01.T01:CDS
CGGATTCGAAGAACATGGCT+TGG 0.473814 3:-98176602 MsG0380017588.01.T01:CDS
TCATCTCTTTCTAGATCATC+GGG 0.475608 3:+98174255 None:intergenic
AAGAGGCGGTGGAGGAGGGA+GGG 0.476979 3:+98176848 None:intergenic
CCCTACACAACACTATCTTA+AGG 0.478827 3:+98173777 None:intergenic
CATTCAAGGGTGTATCCAAT+GGG 0.479178 3:-98175885 MsG0380017588.01.T01:CDS
CGCCACCTTCTCCTCTATCT+GGG 0.481797 3:-98176653 MsG0380017588.01.T01:CDS
ACATCCAAGCTCTTTATAGC+TGG 0.481961 3:-98174578 MsG0380017588.01.T01:CDS
GATTCTTCCAAAGGCGGTGG+AGG 0.482481 3:+98176870 None:intergenic
TAAAGAAGGGCTTGGATTGG+TGG 0.484719 3:+98174483 None:intergenic
ACAGAGCGTTTGAGAGAAGC+AGG 0.486078 3:+98176810 None:intergenic
GAAATGTGAGGAAACTAGAA+AGG 0.486729 3:-98174340 MsG0380017588.01.T01:CDS
AAAACAAAATAATCTGTGTT+GGG 0.487035 3:-98177273 MsG0380017588.01.T01:five_prime_UTR
CAAAACAAAATAATCTGTGT+TGG 0.487391 3:-98177274 MsG0380017588.01.T01:five_prime_UTR
ATTGTTGAAGAGGTGGAAGA+AGG 0.490175 3:-98176717 MsG0380017588.01.T01:CDS
GATGAGATTGAGAATGAAGA+AGG 0.491897 3:-98176525 MsG0380017588.01.T01:CDS
ATTGCCCACGCTCAAGGTGG+TGG 0.492952 3:-98174021 MsG0380017588.01.T01:CDS
TAAAGCTTCTGAGACTGCTC+AGG 0.493736 3:-98176250 MsG0380017588.01.T01:CDS
TTTGGAATGTAATCCAAGAA+TGG 0.494175 3:-98174641 MsG0380017588.01.T01:CDS
ATTGCTCTTCTAAACTCAGC+AGG 0.495940 3:+98176333 None:intergenic
GGCGCCAGTGTTGAATCATT+AGG 0.496446 3:-98175495 MsG0380017588.01.T01:CDS
GAGAATGAGAAGAAAAGAGA+AGG 0.496594 3:+98177152 None:intergenic
TTGGAATGTAATCCAAGAAT+GGG 0.497192 3:-98174640 MsG0380017588.01.T01:CDS
CAGTTACAGCACCGCAAGAT+CGG 0.497409 3:-98176765 MsG0380017588.01.T01:CDS
GGGAAGAGGTTCTTTGAATG+AGG 0.498151 3:-98176550 MsG0380017588.01.T01:CDS
GGATTCGAAGAACATGGCTT+GGG 0.499143 3:-98176601 MsG0380017588.01.T01:CDS
AGAACTAAGAATCTGCATAA+GGG 0.500689 3:+98176290 None:intergenic
GAATCCGGCAAAGGCGGTGG+CGG 0.501551 3:+98176618 None:intergenic
CTTTATCACTGCAGCAAATG+AGG 0.502909 3:+98174404 None:intergenic
AGAATGAGAAGAAAAGAGAA+GGG 0.507845 3:+98177153 None:intergenic
TGCAAGTGATAACATGGAAT+CGG 0.508476 3:-98175909 MsG0380017588.01.T01:CDS
TTTATGGATATGGATAATAT+GGG 0.509779 3:-98176570 MsG0380017588.01.T01:CDS
AGAGGAGAAGGTGGCGCGTG+AGG 0.514111 3:+98176660 None:intergenic
AATCATGCCATGCATAAAGA+AGG 0.514400 3:+98174469 None:intergenic
AAATACAAACAATCCGGTCT+CGG 0.515130 3:-98174229 MsG0380017588.01.T01:CDS
GGTGAGAAATTAGGAGGAAG+AGG 0.515672 3:+98176831 None:intergenic
TGATGTAAATACAAACAATC+CGG 0.517170 3:-98174235 MsG0380017588.01.T01:CDS
TCTTGTGTGTAAATGACTTA+CGG 0.517302 3:+98175458 None:intergenic
AAAGACGATCATACTTCAGC+AGG 0.518195 3:-98174385 MsG0380017588.01.T01:CDS
CAGCACCGCAAGATCGGCGG+TGG 0.518911 3:-98176759 MsG0380017588.01.T01:CDS
CATGGCATAACCGGAATGAC+CGG 0.520438 3:+98176995 None:intergenic
TGAGCCAGCTATAAAGAGCT+TGG 0.525015 3:+98174574 None:intergenic
ACCGGAATGACCGGCGGCGA+AGG 0.525985 3:+98177004 None:intergenic
CGGTCATTCCGGTTATGCCA+TGG 0.529624 3:-98176994 MsG0380017588.01.T01:CDS
AGGCACATAATTGAACACTT+AGG 0.530110 3:+98173797 None:intergenic
GTCACTTTACTCCCAGATAG+AGG 0.530493 3:+98176642 None:intergenic
ACATCAACCTCAACTTTCTC+CGG 0.530753 3:+98176435 None:intergenic
GTGCTTTCCATAATTAAGGA+TGG 0.531625 3:+98173825 None:intergenic
TCATTCAAGGGTGTATCCAA+TGG 0.533090 3:-98175886 MsG0380017588.01.T01:CDS
TATCATTCTAATTTCGCCGA+TGG 0.533390 3:-98176192 MsG0380017588.01.T01:CDS
TCCAAGCCCTTCTTTATGCA+TGG 0.533581 3:-98174476 MsG0380017588.01.T01:CDS
AAGTCGATTGCCCACGCTCA+AGG 0.535916 3:-98174027 MsG0380017588.01.T01:CDS
AACATGGAATCGGTCATTCA+AGG 0.539680 3:-98175899 MsG0380017588.01.T01:CDS
GGTGTATCCAATGGGGAGGG+TGG 0.541152 3:-98175877 MsG0380017588.01.T01:CDS
GCCATGCATAAAGAAGGGCT+TGG 0.543280 3:+98174475 None:intergenic
GATATGGATAATATGGGAAG+AGG 0.547615 3:-98176564 MsG0380017588.01.T01:CDS
GGCGGTGGAATTAGTGGTGG+AGG 0.549912 3:-98176744 MsG0380017588.01.T01:CDS
CCAGAAGCATTTACAACGAA+GGG 0.551600 3:-98174280 MsG0380017588.01.T01:CDS
GAAGCAGGTGAGAAATTAGG+AGG 0.551998 3:+98176825 None:intergenic
ATGAGAATGGTGACAAAGAG+AGG 0.555734 3:+98177196 None:intergenic
TTTGGACAAGTTGTTAGCAT+GGG 0.555933 3:-98175809 MsG0380017588.01.T01:CDS
GCATAAAGAAGGGCTTGGAT+TGG 0.556125 3:+98174480 None:intergenic
TAATTCCACCGCCGATCTTG+CGG 0.558644 3:+98176754 None:intergenic
TGCTGTAACTGCAACGACAC+AGG 0.563887 3:+98176777 None:intergenic
ACATGGAATCGGTCATTCAA+GGG 0.566506 3:-98175898 MsG0380017588.01.T01:CDS
AGGGATTCTTCCAAAGGCGG+TGG 0.573076 3:+98176867 None:intergenic
AGTTTCGCCGTGAGCGTAGT+CGG 0.573795 3:+98176944 None:intergenic
TTTCAGGATGGCCAATATGT+GGG 0.579247 3:-98174781 MsG0380017588.01.T01:intron
GGTTAGAACCTACAAAGCTA+TGG 0.579602 3:+98173846 None:intergenic
AAATACATTACCCCGACCAT+CGG 0.580330 3:+98176176 None:intergenic
AATGAAGAAGGTGAAATTGA+AGG 0.580423 3:-98176513 MsG0380017588.01.T01:CDS
TATTGTTGATATGCAGTCGA+TGG 0.581443 3:-98175433 MsG0380017588.01.T01:CDS
TTCTTCGAATCCGGCAAAGG+CGG 0.581499 3:+98176612 None:intergenic
GAAGAGGTGGAAGAAGGGAA+AGG 0.581945 3:-98176711 MsG0380017588.01.T01:CDS
GTATGCTGCTTTCTTGTGTG+AGG 0.582315 3:+98173917 None:intergenic
GGGAAAGGCGGTGATGCTGA+TGG 0.584993 3:-98176696 MsG0380017588.01.T01:CDS
TGGAGGTGACATTGTTGAAG+AGG 0.585814 3:-98176727 MsG0380017588.01.T01:CDS
GAAACTCTATGAAGAAGTCA+AGG 0.586792 3:-98175782 MsG0380017588.01.T01:intron
CGCACCACCACCTTGAGCGT+GGG 0.587071 3:+98174017 None:intergenic
GAGGTGGAAGAAGGGAAAGG+CGG 0.588013 3:-98176708 MsG0380017588.01.T01:CDS
CCGCACCACCACCTTGAGCG+TGG 0.589202 3:+98174016 None:intergenic
GTAGTCGGAGAGAGCGGCGC+CGG 0.592343 3:+98176959 None:intergenic
GCCTTAAGATAGTGTTGTGT+AGG 0.592871 3:-98173778 MsG0380017588.01.T01:three_prime_UTR
GAGTCATGCAAGTGATAACA+TGG 0.593246 3:-98175915 MsG0380017588.01.T01:CDS
CAGAAGCATTTACAACGAAG+GGG 0.593582 3:-98174279 MsG0380017588.01.T01:CDS
AGGTGACATTGTTGAAGAGG+TGG 0.593877 3:-98176724 MsG0380017588.01.T01:CDS
GGTGCGGTCGTAATGATGCT+TGG 0.594455 3:+98174671 None:intergenic
GGACTCAACAGTTTCTGAAG+TGG 0.596338 3:-98175412 MsG0380017588.01.T01:CDS
TTACTCCCAGATAGAGGAGA+AGG 0.597069 3:+98176648 None:intergenic
GAGAGGACAGAAGAGAGAGA+AGG 0.602114 3:+98177213 None:intergenic
CCACGCTCAAGGTGGTGGTG+CGG 0.602808 3:-98174016 MsG0380017588.01.T01:CDS
GGATCAGAATGAAGAGGCGG+TGG 0.604173 3:+98176897 None:intergenic
ATGTTCTTCGAATCCGGCAA+AGG 0.605600 3:+98176609 None:intergenic
ATCATGCCATGCATAAAGAA+GGG 0.611365 3:+98174470 None:intergenic
GAAGTTAAAGGAGAAATGTG+AGG 0.611782 3:-98174352 MsG0380017588.01.T01:CDS
AAACTAGAAAGGAATTCTTG+AGG 0.618185 3:-98174329 MsG0380017588.01.T01:CDS
GAGAAATTAGGAGGAAGAGG+CGG 0.619004 3:+98176834 None:intergenic
GGAGGGAGGGATTCTTCCAA+AGG 0.620699 3:+98176861 None:intergenic
CAAGGGTGTATCCAATGGGG+AGG 0.622313 3:-98175881 MsG0380017588.01.T01:CDS
GCTCTCTCCGACTACGCTCA+CGG 0.622545 3:-98176951 MsG0380017588.01.T01:CDS
ATCTGCATAAGGGTAACAGA+AGG 0.622988 3:+98176300 None:intergenic
ACCAGAAGCATTTACAACGA+AGG 0.625698 3:-98174281 MsG0380017588.01.T01:CDS
CTGAACAAGCAGAAGAAGCG+TGG 0.626103 3:-98175516 MsG0380017588.01.T01:CDS
CCTTAAGATAGTGTTGTGTA+GGG 0.628462 3:-98173777 MsG0380017588.01.T01:three_prime_UTR
GACGATCATACTTCAGCAGG+AGG 0.629306 3:-98174382 MsG0380017588.01.T01:CDS
ATCGGCGGTGGAATTAGTGG+TGG 0.630858 3:-98176747 MsG0380017588.01.T01:CDS
ATTTGAGTGAAGAATGAGAA+TGG 0.631267 3:+98177183 None:intergenic
TGAGATTGAACCCAAGACAC+CGG 0.633573 3:-98176454 MsG0380017588.01.T01:CDS
GGAGCATGAACATGTACATG+AGG 0.635866 3:-98176403 MsG0380017588.01.T01:CDS
GATTACATTCCAAAGCTGCA+CGG 0.636378 3:+98174650 None:intergenic
CTCCCAGATAGAGGAGAAGG+TGG 0.636470 3:+98176651 None:intergenic
CAAGACACCGGAGAAAGTTG+AGG 0.641109 3:-98176442 MsG0380017588.01.T01:CDS
TTTGCCGGATTCGAAGAACA+TGG 0.646207 3:-98176607 MsG0380017588.01.T01:CDS
TGAGGATGATGTGATAAGAG+AGG 0.648109 3:-98176385 MsG0380017588.01.T01:CDS
GTGAGCGTAGTCGGAGAGAG+CGG 0.649810 3:+98176953 None:intergenic
GGCATAACCGGAATGACCGG+CGG 0.652370 3:+98176998 None:intergenic
TTACAGCACCGCAAGATCGG+CGG 0.652795 3:-98176762 MsG0380017588.01.T01:CDS
GGCGGATCAGAATGAAGAGG+CGG 0.657993 3:+98176894 None:intergenic
GAGAATGTTGATGTTAATGG+AGG 0.660500 3:-98176489 MsG0380017588.01.T01:CDS
TGATGTTAATGGAGGACATG+TGG 0.660982 3:-98176481 MsG0380017588.01.T01:CDS
AAGGGTGTATCCAATGGGGA+GGG 0.663838 3:-98175880 MsG0380017588.01.T01:CDS
GGAGGCGGATCAGAATGAAG+AGG 0.664266 3:+98176891 None:intergenic
TGTTAATGGAGGACATGTGG+AGG 0.675457 3:-98176478 MsG0380017588.01.T01:CDS
CATTCCAAAGCTGCACGGTG+CGG 0.678361 3:+98174655 None:intergenic
GGGAGGGATTCTTCCAAAGG+CGG 0.689716 3:+98176864 None:intergenic
GTTTAGAAGAGCAATTAAGG+TGG 0.690000 3:-98176325 MsG0380017588.01.T01:CDS
GAGTATAATCCGATAGCGCG+CGG 0.690717 3:+98174079 None:intergenic
TGTAACTGCAACGACACAGG+CGG 0.699824 3:+98176780 None:intergenic
AGAAGCATTTACAACGAAGG+GGG 0.702303 3:-98174278 MsG0380017588.01.T01:CDS
TCGATTGCCCACGCTCAAGG+TGG 0.713047 3:-98174024 MsG0380017588.01.T01:CDS
TAACAACTTGTCCAAAACAG+TGG 0.715371 3:+98175816 None:intergenic
ATTCAAGGGTGTATCCAATG+GGG 0.730624 3:-98175884 MsG0380017588.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGAAATTGAATAAAATAA+AGG + Chr3:98174800-98174819 None:intergenic 15.0%
!! TACAACATTAAAATAAACTT+CGG + Chr3:98175952-98175971 None:intergenic 15.0%
!!! CAATAAGTGAAATTTTAAAA+AGG + Chr3:98175346-98175365 None:intergenic 15.0%
!! AAAACAAAATAATCTGTGTT+GGG - Chr3:98173661-98173680 MsG0380017588.01.T01:three_prime_UTR 20.0%
!! TTTATGGATATGGATAATAT+GGG - Chr3:98174364-98174383 MsG0380017588.01.T01:CDS 20.0%
!!! ATAATAAAATGCTTTTCGAT+TGG + Chr3:98175871-98175890 None:intergenic 20.0%
!!! ATATTCTAGAAAATTGTAAG+TGG - Chr3:98175839-98175858 MsG0380017588.01.T01:CDS 20.0%
!!! CAACTAGAGTTTTAAAAAAA+AGG + Chr3:98174905-98174924 None:intergenic 20.0%
!!! GAAAGTATAAATGTCAAAAA+TGG + Chr3:98175191-98175210 None:intergenic 20.0%
!!! TAATAAAATGCTTTTCGATT+GGG + Chr3:98175870-98175889 None:intergenic 20.0%
!!! TAGAATATATTTTGCAACAT+CGG + Chr3:98175827-98175846 None:intergenic 20.0%
! AAATGTGCTTTCCATAATTA+AGG + Chr3:98177116-98177135 None:intergenic 25.0%
! ATCATTAGGAAAAACTAAAG+CGG - Chr3:98175453-98175472 MsG0380017588.01.T01:CDS 25.0%
! CTTTATGGATATGGATAATA+TGG - Chr3:98174363-98174382 MsG0380017588.01.T01:CDS 25.0%
! TAAAATAAACTTCGGTATCT+AGG + Chr3:98175944-98175963 None:intergenic 25.0%
! TATGTATCAAAGTGTATGTT+TGG - Chr3:98177271-98177290 MsG0380017588.01.T01:five_prime_UTR 25.0%
! TGATATTTCTCAAGATCATA+AGG - Chr3:98176234-98176253 MsG0380017588.01.T01:CDS 25.0%
! TGATGCAAAAAATAGAAACT+TGG + Chr3:98176086-98176105 None:intergenic 25.0%
! TGATGTAAATACAAACAATC+CGG - Chr3:98176699-98176718 MsG0380017588.01.T01:CDS 25.0%
!! GGATTATTTCTTTATGGATA+TGG - Chr3:98174354-98174373 MsG0380017588.01.T01:CDS 25.0%
!! TCCATTTTCTAACTCAAAAT+GGG - Chr3:98173815-98173834 MsG0380017588.01.T01:three_prime_UTR 25.0%
!!! AAATTTTACCATAGCTTTGT+AGG - Chr3:98177080-98177099 MsG0380017588.01.T01:CDS 25.0%
!!! GAGTTTTAAAAAAAAGGTCT+AGG + Chr3:98174899-98174918 None:intergenic 25.0%
!!! TCTATTTTTTGCATCACAAA+TGG - Chr3:98176090-98176109 MsG0380017588.01.T01:intron 25.0%
!!! TTTTCAATTTGTTCTGGTAT+TGG - Chr3:98176018-98176037 MsG0380017588.01.T01:intron 25.0%
AAACTAGAAAGGAATTCTTG+AGG - Chr3:98176605-98176624 MsG0380017588.01.T01:CDS 30.0%
AAAGCTAACTAACAAGATGA+AGG + Chr3:98175213-98175232 None:intergenic 30.0%
AATGAAGAAGGTGAAATTGA+AGG - Chr3:98174421-98174440 MsG0380017588.01.T01:CDS 30.0%
ACCAGAACAAATTGAAAACT+AGG + Chr3:98176016-98176035 None:intergenic 30.0%
AGAACTAAGAATCTGCATAA+GGG + Chr3:98174647-98174666 None:intergenic 30.0%
AGAATGAGAAGAAAAGAGAA+GGG + Chr3:98173784-98173803 None:intergenic 30.0%
ATAGAAACTTGGTACTTGAT+TGG + Chr3:98176075-98176094 None:intergenic 30.0%
ATCATCTCTTTCTAGATCAT+CGG + Chr3:98176683-98176702 None:intergenic 30.0%
ATTTGAGTGAAGAATGAGAA+TGG + Chr3:98173754-98173773 None:intergenic 30.0%
CAAATATAGATTGAGAATCC+AGG + Chr3:98175905-98175924 None:intergenic 30.0%
CAATTTGGATAATGACATCA+AGG + Chr3:98174872-98174891 None:intergenic 30.0%
CTAAGATATCAAATAAGCAC+AGG + Chr3:98175643-98175662 None:intergenic 30.0%
GAATCTACTTGATTTCTTTC+AGG - Chr3:98176137-98176156 MsG0380017588.01.T01:intron 30.0%
GAGAAATATCAAGAGATTTG+AGG + Chr3:98176225-98176244 None:intergenic 30.0%
GTGCTTATTTGATATCTTAG+TGG - Chr3:98175643-98175662 MsG0380017588.01.T01:intron 30.0%
GTTCTAACCATCCTTAATTA+TGG - Chr3:98177102-98177121 MsG0380017588.01.T01:CDS 30.0%
TCAAGTAGATTCATGAATCA+TGG + Chr3:98176129-98176148 None:intergenic 30.0%
TCTTGTGTGTAAATGACTTA+CGG + Chr3:98175479-98175498 None:intergenic 30.0%
TGAGTTTAGAAGAGCAATTA+AGG - Chr3:98174606-98174625 MsG0380017588.01.T01:CDS 30.0%
TTATTATGCAGTTTAGTACC+TGG - Chr3:98175884-98175903 MsG0380017588.01.T01:CDS 30.0%
TTGGAATGTAATCCAAGAAT+GGG - Chr3:98176294-98176313 MsG0380017588.01.T01:CDS 30.0%
! ATAACAAGAGCAACAAGTTT+TGG + Chr3:98175574-98175593 None:intergenic 30.0%
! CTCCATTTTCTAACTCAAAA+TGG - Chr3:98173814-98173833 MsG0380017588.01.T01:three_prime_UTR 30.0%
! TTGGTGTGTTAGCAAAATTT+TGG + Chr3:98176056-98176075 None:intergenic 30.0%
! TTGGTTAAAGGAAGTTTTCA+AGG + Chr3:98175728-98175747 None:intergenic 30.0%
! TTTGGAATGTAATCCAAGAA+TGG - Chr3:98176293-98176312 MsG0380017588.01.T01:CDS 30.0%
! TTTTCCTAATGATTCAACAC+TGG + Chr3:98175446-98175465 None:intergenic 30.0%
!! AAAACCAAGCTTTTGAAGAA+TGG - Chr3:98176629-98176648 MsG0380017588.01.T01:CDS 30.0%
!! AAACTTGTTGCTCTTGTTAT+TGG - Chr3:98175574-98175593 MsG0380017588.01.T01:intron 30.0%
!! AACTTGTTGCTCTTGTTATT+GGG - Chr3:98175575-98175594 MsG0380017588.01.T01:intron 30.0%
!! TAACTTGTTGCTCTTAATGA+GGG - Chr3:98175316-98175335 MsG0380017588.01.T01:intron 30.0%
!! TCCTAGTTTTCAATTTGTTC+TGG - Chr3:98176012-98176031 MsG0380017588.01.T01:intron 30.0%
!! TGAGGTTGATGTGTATAATA+AGG - Chr3:98174510-98174529 MsG0380017588.01.T01:CDS 30.0%
!!! ACCCATTTTGAGTTAGAAAA+TGG + Chr3:98173819-98173838 None:intergenic 30.0%
!!! GAGACGAGATTTTTTCTTTT+AGG + Chr3:98176414-98176433 None:intergenic 30.0%
!!! GTTTAAGGTTTTTAGTTAGC+TGG - Chr3:98174931-98174950 MsG0380017588.01.T01:intron 30.0%
AAATACAAACAATCCGGTCT+CGG - Chr3:98176705-98176724 MsG0380017588.01.T01:CDS 35.0%
AAGGATGAACTGCAAAAATG+AGG + Chr3:98173705-98173724 None:intergenic 35.0%
AATCATGCCATGCATAAAGA+AGG + Chr3:98176468-98176487 None:intergenic 35.0%
AGGCACATAATTGAACACTT+AGG + Chr3:98177140-98177159 None:intergenic 35.0%
ATCATGCCATGCATAAAGAA+GGG + Chr3:98176467-98176486 None:intergenic 35.0%
CCTTAAGATAGTGTTGTGTA+GGG - Chr3:98177157-98177176 MsG0380017588.01.T01:five_prime_UTR 35.0%
CTACTTGATTTCTTTCAGGA+TGG - Chr3:98176141-98176160 MsG0380017588.01.T01:intron 35.0%
CTCACATTCAAGACTAATTC+AGG + Chr3:98175781-98175800 None:intergenic 35.0%
CTCTAGTTGTGTGAAGTTTA+AGG - Chr3:98174916-98174935 MsG0380017588.01.T01:intron 35.0%
GAAACTCTATGAAGAAGTCA+AGG - Chr3:98175152-98175171 MsG0380017588.01.T01:intron 35.0%
GAAATGTGAGGAAACTAGAA+AGG - Chr3:98176594-98176613 MsG0380017588.01.T01:CDS 35.0%
GAACATATTCTCCCACATAT+TGG + Chr3:98176167-98176186 None:intergenic 35.0%
GAAGTTAAAGGAGAAATGTG+AGG - Chr3:98176582-98176601 MsG0380017588.01.T01:CDS 35.0%
GAGAACTAAGAATCTGCATA+AGG + Chr3:98174648-98174667 None:intergenic 35.0%
GAGAATGAGAAGAAAAGAGA+AGG + Chr3:98173785-98173804 None:intergenic 35.0%
GAGAATGTTGATGTTAATGG+AGG - Chr3:98174445-98174464 MsG0380017588.01.T01:CDS 35.0%
GATATGGATAATATGGGAAG+AGG - Chr3:98174370-98174389 MsG0380017588.01.T01:CDS 35.0%
GATGAGATTGAGAATGAAGA+AGG - Chr3:98174409-98174428 MsG0380017588.01.T01:CDS 35.0%
GGTGAGAATGTTGATGTTAA+TGG - Chr3:98174442-98174461 MsG0380017588.01.T01:CDS 35.0%
GTCCTAAATTTCATGCTTGT+TGG - Chr3:98175755-98175774 MsG0380017588.01.T01:intron 35.0%
GTGCTTTCCATAATTAAGGA+TGG + Chr3:98177112-98177131 None:intergenic 35.0%
GTTTAGAAGAGCAATTAAGG+TGG - Chr3:98174609-98174628 MsG0380017588.01.T01:CDS 35.0%
TAACAACTTGTCCAAAACAG+TGG + Chr3:98175121-98175140 None:intergenic 35.0%
TAGAAAACACGACAGTACAA+TGG + Chr3:98175263-98175282 None:intergenic 35.0%
TATCATTCTAATTTCGCCGA+TGG - Chr3:98174742-98174761 MsG0380017588.01.T01:CDS 35.0%
TATTGTTGATATGCAGTCGA+TGG - Chr3:98175501-98175520 MsG0380017588.01.T01:CDS 35.0%
TCATCTCTTTCTAGATCATC+GGG + Chr3:98176682-98176701 None:intergenic 35.0%
TGCAAGTGATAACATGGAAT+CGG - Chr3:98175025-98175044 MsG0380017588.01.T01:intron 35.0%
TGTAAAGTGACGCGATTATT+AGG + Chr3:98175983-98176002 None:intergenic 35.0%
TTAGCTGGAATTGACATGTA+AGG - Chr3:98174946-98174965 MsG0380017588.01.T01:intron 35.0%
TTTGGACAAGTTGTTAGCAT+GGG - Chr3:98175125-98175144 MsG0380017588.01.T01:intron 35.0%
! ATATCTCTTTGACTTCCCAT+TGG + Chr3:98175610-98175629 None:intergenic 35.0%
! ATTGGGTAAGTATTGCCAAT+GGG - Chr3:98175592-98175611 MsG0380017588.01.T01:intron 35.0%
! CTTCACGCATTAAGTTTTTG+CGG + Chr3:98173892-98173911 None:intergenic 35.0%
! GAAATTTAGGACGTTGTCAT+TGG + Chr3:98175747-98175766 None:intergenic 35.0%
! GGCTTGGGATTATTTCTTTA+TGG - Chr3:98174348-98174367 MsG0380017588.01.T01:CDS 35.0%
! TATTGGGTAAGTATTGCCAA+TGG - Chr3:98175591-98175610 MsG0380017588.01.T01:intron 35.0%
! TGATTTGCAATGACATTAGC+AGG - Chr3:98174976-98174995 MsG0380017588.01.T01:intron 35.0%
! TTTTGGACAAGTTGTTAGCA+TGG - Chr3:98175124-98175143 MsG0380017588.01.T01:intron 35.0%
!! GTAACTTGTTGCTCTTAATG+AGG - Chr3:98175315-98175334 MsG0380017588.01.T01:intron 35.0%
!! GTTTTCAAGGAAGTTCACAA+CGG + Chr3:98175715-98175734 None:intergenic 35.0%
!!! GTGACCAAAGTTTTAAATCG+CGG - Chr3:98174834-98174853 MsG0380017588.01.T01:intron 35.0%
!!! TCTTTTAGGTTGCTTTCGAT+GGG + Chr3:98176400-98176419 None:intergenic 35.0%
!!! TGACCAAAGTTTTAAATCGC+GGG - Chr3:98174835-98174854 MsG0380017588.01.T01:intron 35.0%
!!! TTCTTTTAGGTTGCTTTCGA+TGG + Chr3:98176401-98176420 None:intergenic 35.0%
AAAGACGATCATACTTCAGC+AGG - Chr3:98176549-98176568 MsG0380017588.01.T01:CDS 40.0%
AAATACATTACCCCGACCAT+CGG + Chr3:98174761-98174780 None:intergenic 40.0%
AACATGGAATCGGTCATTCA+AGG - Chr3:98175035-98175054 MsG0380017588.01.T01:intron 40.0%
ACAACTGAGAATCGCGAATA+TGG + Chr3:98175549-98175568 None:intergenic 40.0%
ACATCAACCTCAACTTTCTC+CGG + Chr3:98174502-98174521 None:intergenic 40.0%
ACATCCAAGCTCTTTATAGC+TGG - Chr3:98176356-98176375 MsG0380017588.01.T01:CDS 40.0%
ACATGGAATCGGTCATTCAA+GGG - Chr3:98175036-98175055 MsG0380017588.01.T01:intron 40.0%
AGAGAAGCAGGTGAGAAATT+AGG + Chr3:98174115-98174134 None:intergenic 40.0%
ATCTGCATAAGGGTAACAGA+AGG + Chr3:98174637-98174656 None:intergenic 40.0%
ATGAGAATGGTGACAAAGAG+AGG + Chr3:98173741-98173760 None:intergenic 40.0%
ATTCTAATTTCGCCGATGGT+CGG - Chr3:98174746-98174765 MsG0380017588.01.T01:CDS 40.0%
ATTGCTCTTCTAAACTCAGC+AGG + Chr3:98174604-98174623 None:intergenic 40.0%
ATTGTTGAAGAGGTGGAAGA+AGG - Chr3:98174217-98174236 MsG0380017588.01.T01:CDS 40.0%
CAAATTGTGACTCCCATTCT+TGG + Chr3:98176309-98176328 None:intergenic 40.0%
CCCTACACAACACTATCTTA+AGG + Chr3:98177160-98177179 None:intergenic 40.0%
CTAAGATGCTTGAAGCTACT+AGG - Chr3:98174713-98174732 MsG0380017588.01.T01:CDS 40.0%
CTTTATCACTGCAGCAAATG+AGG + Chr3:98176533-98176552 None:intergenic 40.0%
GAGTCATGCAAGTGATAACA+TGG - Chr3:98175019-98175038 MsG0380017588.01.T01:intron 40.0%
GATTACATTCCAAAGCTGCA+CGG + Chr3:98176287-98176306 None:intergenic 40.0%
GCCTTAAGATAGTGTTGTGT+AGG - Chr3:98177156-98177175 MsG0380017588.01.T01:five_prime_UTR 40.0%
GGAATTGACATGTAAGGTTG+AGG - Chr3:98174952-98174971 MsG0380017588.01.T01:intron 40.0%
GGAGGAAGAGATGAAGTTAA+AGG - Chr3:98176570-98176589 MsG0380017588.01.T01:CDS 40.0%
GGCCAACAAGCATGAAATTT+AGG + Chr3:98175760-98175779 None:intergenic 40.0%
GGTACCATTCTTCAAAAGCT+TGG + Chr3:98176636-98176655 None:intergenic 40.0%
GGTTAGAACCTACAAAGCTA+TGG + Chr3:98177091-98177110 None:intergenic 40.0%
TGAGGATGATGTGATAAGAG+AGG - Chr3:98174549-98174568 MsG0380017588.01.T01:CDS 40.0%
TGATGTTAATGGAGGACATG+TGG - Chr3:98174453-98174472 MsG0380017588.01.T01:CDS 40.0%
TTCACTTATTGTCGACAGCA+AGG - Chr3:98175355-98175374 MsG0380017588.01.T01:intron 40.0%
TTGTTGAAGAGGTGGAAGAA+GGG - Chr3:98174218-98174237 MsG0380017588.01.T01:CDS 40.0%
TTTCAGGATGGCCAATATGT+GGG - Chr3:98176153-98176172 MsG0380017588.01.T01:intron 40.0%
! AAAGGTCTAGGACTGCAATT+TGG + Chr3:98174887-98174906 None:intergenic 40.0%
! AGAAACACATGCCACTGTTT+TGG - Chr3:98175107-98175126 MsG0380017588.01.T01:intron 40.0%
! AGGACGTTGTCATTGGTTAA+AGG + Chr3:98175740-98175759 None:intergenic 40.0%
! ATTCAAGGGTGTATCCAATG+GGG - Chr3:98175050-98175069 MsG0380017588.01.T01:intron 40.0%
! CATTCAAGGGTGTATCCAAT+GGG - Chr3:98175049-98175068 MsG0380017588.01.T01:intron 40.0%
! GGTCTGTAACTATTTTCAGC+TGG + Chr3:98176204-98176223 None:intergenic 40.0%
! TCATTCAAGGGTGTATCCAA+TGG - Chr3:98175048-98175067 MsG0380017588.01.T01:intron 40.0%
! TTGCAACATCGGTTACTACT+AGG + Chr3:98175816-98175835 None:intergenic 40.0%
!! ACCAGAAGCATTTACAACGA+AGG - Chr3:98176653-98176672 MsG0380017588.01.T01:CDS 40.0%
!! AGAAGCATTTACAACGAAGG+GGG - Chr3:98176656-98176675 MsG0380017588.01.T01:CDS 40.0%
!! CAGAAGCATTTACAACGAAG+GGG - Chr3:98176655-98176674 MsG0380017588.01.T01:CDS 40.0%
!! CCAGAAGCATTTACAACGAA+GGG - Chr3:98176654-98176673 MsG0380017588.01.T01:CDS 40.0%
AGGTGACATTGTTGAAGAGG+TGG - Chr3:98174210-98174229 MsG0380017588.01.T01:CDS 45.0%
ATCGGTTACTACTAGGATGC+TGG + Chr3:98175809-98175828 None:intergenic 45.0%
ATGTTCTTCGAATCCGGCAA+AGG + Chr3:98174328-98174347 None:intergenic 45.0%
CAAGCCATGTTCTTCGAATC+CGG + Chr3:98174334-98174353 None:intergenic 45.0%
CCCTTCGTTGTAAATGCTTC+TGG + Chr3:98176657-98176676 None:intergenic 45.0%
CTTTCAGGATGGCCAATATG+TGG - Chr3:98176152-98176171 MsG0380017588.01.T01:intron 45.0%
GAAGCAGGTGAGAAATTAGG+AGG + Chr3:98174112-98174131 None:intergenic 45.0%
GAGAAATTAGGAGGAAGAGG+CGG + Chr3:98174103-98174122 None:intergenic 45.0%
GCATAAAGAAGGGCTTGGAT+TGG + Chr3:98176457-98176476 None:intergenic 45.0%
GGAGCATGAACATGTACATG+AGG - Chr3:98174531-98174550 MsG0380017588.01.T01:CDS 45.0%
GGATTCGAAGAACATGGCTT+GGG - Chr3:98174333-98174352 MsG0380017588.01.T01:CDS 45.0%
GGGAAGAGGTTCTTTGAATG+AGG - Chr3:98174384-98174403 MsG0380017588.01.T01:CDS 45.0%
GGTGAGAAATTAGGAGGAAG+AGG + Chr3:98174106-98174125 None:intergenic 45.0%
GTGAGGATGCAGCTTAACTT+AGG + Chr3:98177003-98177022 None:intergenic 45.0%
TCAACTTTCTCCGGTGTCTT+GGG + Chr3:98174493-98174512 None:intergenic 45.0%
TCCAAGCCCTTCTTTATGCA+TGG - Chr3:98176458-98176477 MsG0380017588.01.T01:CDS 45.0%
TGAGATTGAACCCAAGACAC+CGG - Chr3:98174480-98174499 MsG0380017588.01.T01:CDS 45.0%
TGAGCCAGCTATAAAGAGCT+TGG + Chr3:98176363-98176382 None:intergenic 45.0%
TGGAGGTGACATTGTTGAAG+AGG - Chr3:98174207-98174226 MsG0380017588.01.T01:CDS 45.0%
TGTTAATGGAGGACATGTGG+AGG - Chr3:98174456-98174475 MsG0380017588.01.T01:CDS 45.0%
TTACTCCCAGATAGAGGAGA+AGG + Chr3:98174289-98174308 None:intergenic 45.0%
TTCTAATTTCGCCGATGGTC+GGG - Chr3:98174747-98174766 MsG0380017588.01.T01:CDS 45.0%
TTTGAGAGCCATGGCATAAC+CGG + Chr3:98173951-98173970 None:intergenic 45.0%
TTTGCCGGATTCGAAGAACA+TGG - Chr3:98174327-98174346 MsG0380017588.01.T01:CDS 45.0%
! GGACTCAACAGTTTCTGAAG+TGG - Chr3:98175522-98175541 MsG0380017588.01.T01:CDS 45.0%
! GTCACTTTACTCCCAGATAG+AGG + Chr3:98174295-98174314 None:intergenic 45.0%
! GTGCCCGCGATTTAAAACTT+TGG + Chr3:98174841-98174860 None:intergenic 45.0%
! TAAAGAAGGGCTTGGATTGG+TGG + Chr3:98176454-98176473 None:intergenic 45.0%
!! GTATGCTGCTTTCTTGTGTG+AGG + Chr3:98177020-98177039 None:intergenic 45.0%
!! TAAAGCTTCTGAGACTGCTC+AGG - Chr3:98174684-98174703 MsG0380017588.01.T01:CDS 45.0%
!!! ATTGGTGGATTTTGGGCTCT+TGG + Chr3:98176439-98176458 None:intergenic 45.0%
!!! GGCTTGGATTGGTGGATTTT+GGG + Chr3:98176446-98176465 None:intergenic 45.0%
AAATTAGGAGGAAGAGGCGG+TGG + Chr3:98174100-98174119 None:intergenic 50.0%
AAGATCGGCGGTGGAATTAG+TGG - Chr3:98174184-98174203 MsG0380017588.01.T01:CDS 50.0%
ACAAACTGCTTCTCCGAGAC+CGG + Chr3:98176721-98176740 None:intergenic 50.0%
CAAGACACCGGAGAAAGTTG+AGG - Chr3:98174492-98174511 MsG0380017588.01.T01:CDS 50.0%
CAGTTACAGCACCGCAAGAT+CGG - Chr3:98174169-98174188 MsG0380017588.01.T01:CDS 50.0%
CATGGCATAACCGGAATGAC+CGG + Chr3:98173942-98173961 None:intergenic 50.0%
CGGATTCGAAGAACATGGCT+TGG - Chr3:98174332-98174351 MsG0380017588.01.T01:CDS 50.0%
CTCAACTTTCTCCGGTGTCT+TGG + Chr3:98174494-98174513 None:intergenic 50.0%
CTGAACAAGCAGAAGAAGCG+TGG - Chr3:98175418-98175437 MsG0380017588.01.T01:CDS 50.0%
GAAGAGGTGGAAGAAGGGAA+AGG - Chr3:98174223-98174242 MsG0380017588.01.T01:CDS 50.0%
GACGATCATACTTCAGCAGG+AGG - Chr3:98176552-98176571 MsG0380017588.01.T01:CDS 50.0%
GAGAGGACAGAAGAGAGAGA+AGG + Chr3:98173724-98173743 None:intergenic 50.0%
GAGTATAATCCGATAGCGCG+CGG + Chr3:98176858-98176877 None:intergenic 50.0%
GCCATGCATAAAGAAGGGCT+TGG + Chr3:98176462-98176481 None:intergenic 50.0%
GCCATGGCTCTCAAAAACAC+CGG - Chr3:98173956-98173975 MsG0380017588.01.T01:three_prime_UTR 50.0%
TAATTCCACCGCCGATCTTG+CGG + Chr3:98174183-98174202 None:intergenic 50.0%
TCTAATTTCGCCGATGGTCG+GGG - Chr3:98174748-98174767 MsG0380017588.01.T01:CDS 50.0%
TGCTGTAACTGCAACGACAC+AGG + Chr3:98174160-98174179 None:intergenic 50.0%
TGTAACTGCAACGACACAGG+CGG + Chr3:98174157-98174176 None:intergenic 50.0%
TTCTTCGAATCCGGCAAAGG+CGG + Chr3:98174325-98174344 None:intergenic 50.0%
! AAGGGTGTATCCAATGGGGA+GGG - Chr3:98175054-98175073 MsG0380017588.01.T01:intron 50.0%
! ACAGAGCGTTTGAGAGAAGC+AGG + Chr3:98174127-98174146 None:intergenic 50.0%
! ATCTTTTCCACCCTCCCCAT+TGG + Chr3:98175067-98175086 None:intergenic 50.0%
! GGCGCCAGTGTTGAATCATT+AGG - Chr3:98175439-98175458 MsG0380017588.01.T01:CDS 50.0%
!!! GCAAGCGAGTTTTGAGACTC+TGG + Chr3:98176825-98176844 None:intergenic 50.0%
!!! GGGCTTGGATTGGTGGATTT+TGG + Chr3:98176447-98176466 None:intergenic 50.0%
AAGTCGATTGCCCACGCTCA+AGG - Chr3:98176907-98176926 MsG0380017588.01.T01:CDS 55.0%
AGGGATTCTTCCAAAGGCGG+TGG + Chr3:98174070-98174089 None:intergenic 55.0%
AGTTTCGCCGTGAGCGTAGT+CGG + Chr3:98173993-98174012 None:intergenic 55.0%
ATCGGCGGTGGAATTAGTGG+TGG - Chr3:98174187-98174206 MsG0380017588.01.T01:CDS 55.0%
CATTCCAAAGCTGCACGGTG+CGG + Chr3:98176282-98176301 None:intergenic 55.0%
CGCCACCTTCTCCTCTATCT+GGG - Chr3:98174281-98174300 MsG0380017588.01.T01:CDS 55.0%
CGGTCATTCCGGTTATGCCA+TGG - Chr3:98173940-98173959 MsG0380017588.01.T01:three_prime_UTR 55.0%
CTCCCAGATAGAGGAGAAGG+TGG + Chr3:98174286-98174305 None:intergenic 55.0%
GAGGTGGAAGAAGGGAAAGG+CGG - Chr3:98174226-98174245 MsG0380017588.01.T01:CDS 55.0%
GATTCTTCCAAAGGCGGTGG+AGG + Chr3:98174067-98174086 None:intergenic 55.0%
GCAGATTTCGCTAGCTCGTC+AGG + Chr3:98176505-98176524 None:intergenic 55.0%
GGAGGCGGATCAGAATGAAG+AGG + Chr3:98174046-98174065 None:intergenic 55.0%
GGAGGGAGGGATTCTTCCAA+AGG + Chr3:98174076-98174095 None:intergenic 55.0%
GGATCAGAATGAAGAGGCGG+TGG + Chr3:98174040-98174059 None:intergenic 55.0%
GGCGGATCAGAATGAAGAGG+CGG + Chr3:98174043-98174062 None:intergenic 55.0%
GGGAGGGATTCTTCCAAAGG+CGG + Chr3:98174073-98174092 None:intergenic 55.0%
GGTGCGGTCGTAATGATGCT+TGG + Chr3:98176266-98176285 None:intergenic 55.0%
TTACAGCACCGCAAGATCGG+CGG - Chr3:98174172-98174191 MsG0380017588.01.T01:CDS 55.0%
! CAAGGGTGTATCCAATGGGG+AGG - Chr3:98175053-98175072 MsG0380017588.01.T01:intron 55.0%
!! GCCGGTGTTTTTGAGAGCCA+TGG + Chr3:98173960-98173979 None:intergenic 55.0%
!! GGTGGATTTTGGGCTCTTGG+CGG + Chr3:98176436-98176455 None:intergenic 55.0%
ATTGCCCACGCTCAAGGTGG+TGG - Chr3:98176913-98176932 MsG0380017588.01.T01:CDS 60.0%
GCGCCACCTTCTCCTCTATC+TGG - Chr3:98174280-98174299 MsG0380017588.01.T01:CDS 60.0%
GCTCTCTCCGACTACGCTCA+CGG - Chr3:98173983-98174002 MsG0380017588.01.T01:three_prime_UTR 60.0%
GGCATAACCGGAATGACCGG+CGG + Chr3:98173939-98173958 None:intergenic 60.0%
GGCGGTGGAATTAGTGGTGG+AGG - Chr3:98174190-98174209 MsG0380017588.01.T01:CDS 60.0%
GGGAAAGGCGGTGATGCTGA+TGG - Chr3:98174238-98174257 MsG0380017588.01.T01:CDS 60.0%
GGTGTATCCAATGGGGAGGG+TGG - Chr3:98175057-98175076 MsG0380017588.01.T01:intron 60.0%
GTGAGCGTAGTCGGAGAGAG+CGG + Chr3:98173984-98174003 None:intergenic 60.0%
TCGATTGCCCACGCTCAAGG+TGG - Chr3:98176910-98176929 MsG0380017588.01.T01:CDS 60.0%
TCTTCCAAAGGCGGTGGAGG+AGG + Chr3:98174064-98174083 None:intergenic 60.0%
TGAGCTCTTCCGCGCGCTAT+CGG - Chr3:98176846-98176865 MsG0380017588.01.T01:CDS 60.0%
TTAGGAGGAAGAGGCGGTGG+AGG + Chr3:98174097-98174116 None:intergenic 60.0%
TTCGAATCCGGCAAAGGCGG+TGG + Chr3:98174322-98174341 None:intergenic 60.0%
AAGAGGCGGTGGAGGAGGGA+GGG + Chr3:98174089-98174108 None:intergenic 65.0%
ACGACCGCACCGTGCAGCTT+TGG - Chr3:98176275-98176294 MsG0380017588.01.T01:CDS 65.0%
AGAGGAGAAGGTGGCGCGTG+AGG + Chr3:98174277-98174296 None:intergenic 65.0%
CGCACCACCACCTTGAGCGT+GGG + Chr3:98176920-98176939 None:intergenic 65.0%
GAATCCGGCAAAGGCGGTGG+CGG + Chr3:98174319-98174338 None:intergenic 65.0%
GAGGAAGAGGCGGTGGAGGA+GGG + Chr3:98174093-98174112 None:intergenic 65.0%
GATAGCGCGCGGAAGAGCTC+AGG + Chr3:98176847-98176866 None:intergenic 65.0%
TCCAAAGGCGGTGGAGGAGG+CGG + Chr3:98174061-98174080 None:intergenic 65.0%
! CCACGCTCAAGGTGGTGGTG+CGG - Chr3:98176918-98176937 MsG0380017588.01.T01:CDS 65.0%
ACCGGAATGACCGGCGGCGA+AGG + Chr3:98173933-98173952 None:intergenic 70.0%
CAGCACCGCAAGATCGGCGG+TGG - Chr3:98174175-98174194 MsG0380017588.01.T01:CDS 70.0%
CCGCACCACCACCTTGAGCG+TGG + Chr3:98176921-98176940 None:intergenic 70.0%
GAAGAGGCGGTGGAGGAGGG+AGG + Chr3:98174090-98174109 None:intergenic 70.0%
GCCTTCGCCGCCGGTCATTC+CGG - Chr3:98173929-98173948 MsG0380017588.01.T01:three_prime_UTR 70.0%
GCTCGTAACGCCTTCGCCGC+CGG - Chr3:98173920-98173939 MsG0380017588.01.T01:three_prime_UTR 70.0%
GGAGGAAGAGGCGGTGGAGG+AGG + Chr3:98174094-98174113 None:intergenic 70.0%
GTAGTCGGAGAGAGCGGCGC+CGG + Chr3:98173978-98173997 None:intergenic 70.0%
TCCGCCTCCTCCACCGCCTT+TGG - Chr3:98174057-98174076 MsG0380017588.01.T01:CDS 70.0%
GACGCCGCCACCGCCTTTGC+CGG - Chr3:98174312-98174331 MsG0380017588.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98173661 98177295 98173661 ID=MsG0380017588.01;Name=MsG0380017588.01
Chr3 mRNA 98173661 98177295 98173661 ID=MsG0380017588.01.T01;Parent=MsG0380017588.01;Name=MsG0380017588.01.T01;_AED=0.17;_eAED=0.17;_QI=172|1|1|1|1|1|4|350|707
Chr3 exon 98173661 98174797 98173661 ID=MsG0380017588.01.T01:exon:4138;Parent=MsG0380017588.01.T01
Chr3 exon 98175360 98175583 98175360 ID=MsG0380017588.01.T01:exon:4137;Parent=MsG0380017588.01.T01
Chr3 exon 98175783 98175958 98175783 ID=MsG0380017588.01.T01:exon:4136;Parent=MsG0380017588.01.T01
Chr3 exon 98176187 98177295 98176187 ID=MsG0380017588.01.T01:exon:4135;Parent=MsG0380017588.01.T01
Chr3 five_prime_UTR 98177124 98177295 98177124 ID=MsG0380017588.01.T01:five_prime_utr;Parent=MsG0380017588.01.T01
Chr3 CDS 98176187 98177123 98176187 ID=MsG0380017588.01.T01:cds;Parent=MsG0380017588.01.T01
Chr3 CDS 98175783 98175958 98175783 ID=MsG0380017588.01.T01:cds;Parent=MsG0380017588.01.T01
Chr3 CDS 98175360 98175583 98175360 ID=MsG0380017588.01.T01:cds;Parent=MsG0380017588.01.T01
Chr3 CDS 98174011 98174797 98174011 ID=MsG0380017588.01.T01:cds;Parent=MsG0380017588.01.T01
Chr3 three_prime_UTR 98173661 98174010 98173661 ID=MsG0380017588.01.T01:three_prime_utr;Parent=MsG0380017588.01.T01
Gene Sequence

>MsG0380017588.01.T01

ATGGGTTGCGCTCAATCACGCATAGACAATGAAGAATCAGTAGCACGTTGCAAAGACCGCAAAAACTTAATGCGTGAAGCTGTCGCTGCTCGTAACGCCTTCGCCGCCGGTCATTCCGGTTATGCCATGGCTCTCAAAAACACCGGCGCCGCTCTCTCCGACTACGCTCACGGCGAAACTCATCTCGACGACATTGAGCTTCATCCACCGCCTCTTCATTCTGATCCGCCTCCTCCACCGCCTTTGGAAGAATCCCTCCCTCCTCCACCGCCTCTTCCTCCTAATTTCTCACCTGCTTCTCTCAAACGCTCTGTAACATTGCCGCCTGTGTCGTTGCAGTTACAGCACCGCAAGATCGGCGGTGGAATTAGTGGTGGAGGTGACATTGTTGAAGAGGTGGAAGAAGGGAAAGGCGGTGATGCTGATGGACATGTTCACGCGCCTCACGCGCCACCTTCTCCTCTATCTGGGAGTAAAGTGACGCCGCCACCGCCTTTGCCGGATTCGAAGAACATGGCTTGGGATTATTTCTTTATGGATATGGATAATATGGGAAGAGGTTCTTTGAATGAGGAAGATGAGATTGAGAATGAAGAAGGTGAAATTGAAGGTGAGAATGTTGATGTTAATGGAGGACATGTGGAGGATGAGATTGAACCCAAGACACCGGAGAAAGTTGAGGTTGATGTGTATAATAAGGAGCATGAACATGTACATGAGGATGATGTGATAAGAGAGGCTACACATATTGAACATTCTAAAACTGCTCCTGCTGAGTTTAGAAGAGCAATTAAGGTGGTTCCTTCTGTTACCCTTATGCAGATTCTTAGTTCTCTTGATGATCATTTTCTTAAAGCTTCTGAGACTGCTCAGGATGTTTCTAAGATGCTTGAAGCTACTAGGTTGCATTATCATTCTAATTTCGCCGATGGTCGGGGTCACATTGATCATTCTGCTAGAGTCATGCAAGTGATAACATGGAATCGGTCATTCAAGGGTGTATCCAATGGGGAGGGTGGAAAAGATGATTTTGATTCTGAAGATAAAGAAACACATGCCACTGTTTTGGACAAGTTGTTAGCATGGGAAAAGAAACTCTATGAAGAAGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAAAGAAAAGTTGCAATTCTGAACAAGCAGAAGAAGCGTGGCGCCAGTGTTGAATCATTAGGAAAAACTAAAGCGGCCGTAAGTCATTTACACACAAGATATATTGTTGATATGCAGTCGATGGACTCAACAGTTTCTGAAGTGGACCATATTCGCGATTCTCAGTTGTATCCAAAACTTGTTGCTCTTGTTATTGGGATGGCCAATATGTGGGAGAATATGTTCATGCATCATGACAGCCAGCTGAAAATAGTTACAGACCTCAAATCTCTTGATATTTCTCAAGATCATAAGGAAACAACCAAGCATCATTACGACCGCACCGTGCAGCTTTGGAATGTAATCCAAGAATGGGAGTCACAATTTGAGAAGCTTGTGACTCAACAGAAGCATTACATCCAAGCTCTTTATAGCTGGCTCAAGTTAAATCTCATTCCCATCGAAAGCAACCTAAAAGAAAAAATCTCGTCTCCGCCAAGAGCCCAAAATCCACCAATCCAAGCCCTTCTTTATGCATGGCATGATTATCTCGACAAGCTTCCTGACGAGCTAGCGAAATCTGCTATTACCTCATTTGCTGCAGTGATAAAGACGATCATACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGAAATGTGAGGAAACTAGAAAGGAATTCTTGAGGAAAAACCAAGCTTTTGAAGAATGGTACCAGAAGCATTTACAACGAAGGGGGCCCGATGATCTAGAAAGAGATGATGTAAATACAAACAATCCGGTCTCGGAGAAGCAGTTTGTCGTTGAGAGCTTGAAGAAGAGATTAGAAGAAGAAACTGAATCTCACAAAAAATTGTGTGTTCAAGTAAGAGAGAAATCACTCCAGAGTCTCAAAACTCGCTTGCCTGAGCTCTTCCGCGCGCTATCGGATTATACTCATGCGTGTTCTGATGCTTATGAGAAACTGAAGTCGATTGCCCACGCTCAAGGTGGTGGTGCGGCGTGA

Protein sequence

>MsG0380017588.01.T01

MGCAQSRIDNEESVARCKDRKNLMREAVAARNAFAAGHSGYAMALKNTGAALSDYAHGETHLDDIELHPPPLHSDPPPPPPLEESLPPPPPLPPNFSPASLKRSVTLPPVSLQLQHRKIGGGISGGGDIVEEVEEGKGGDADGHVHAPHAPPSPLSGSKVTPPPPLPDSKNMAWDYFFMDMDNMGRGSLNEEDEIENEEGEIEGENVDVNGGHVEDEIEPKTPEKVEVDVYNKEHEHVHEDDVIREATHIEHSKTAPAEFRRAIKVVPSVTLMQILSSLDDHFLKASETAQDVSKMLEATRLHYHSNFADGRGHIDHSARVMQVITWNRSFKGVSNGEGGKDDFDSEDKETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASVESLGKTKAAVSHLHTRYIVDMQSMDSTVSEVDHIRDSQLYPKLVALVIGMANMWENMFMHHDSQLKIVTDLKSLDISQDHKETTKHHYDRTVQLWNVIQEWESQFEKLVTQQKHYIQALYSWLKLNLIPIESNLKEKISSPPRAQNPPIQALLYAWHDYLDKLPDELAKSAITSFAAVIKTIILQQEEEMKLKEKCEETRKEFLRKNQAFEEWYQKHLQRRGPDDLERDDVNTNNPVSEKQFVVESLKKRLEEETESHKKLCVQVREKSLQSLKTRLPELFRALSDYTHACSDAYEKLKSIAHAQGGGAA*