AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005563.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005563.01.T01 MTR_1g102980 88.428 458 14 4 1 421 1 456 0.0 796
MsG0180005563.01.T01 MTR_1g041395 61.284 483 109 10 1 420 1 468 5.39e-135 395
MsG0180005563.01.T01 MTR_1g041395 61.077 483 111 10 1 420 1 469 7.39e-135 395
MsG0180005563.01.T01 MTR_1g041395 60.575 487 113 10 1 420 1 475 4.29e-133 391
MsG0180005563.01.T01 MTR_1g102980 84.923 325 11 3 134 421 8 331 8.15e-131 380
MsG0180005563.01.T01 MTR_1g071450 55.724 463 139 11 20 419 24 483 3.16e-113 340
MsG0180005563.01.T01 MTR_7g095500 54.402 443 138 10 22 404 20 458 2.49e-107 329
MsG0180005563.01.T01 MTR_1g041395 65.192 339 68 5 131 420 1 338 2.32e-86 267
MsG0180005563.01.T01 MTR_3g110182 35.507 414 216 15 22 417 33 413 1.04e-42 155
MsG0180005563.01.T01 MTR_3g110182 38.348 339 145 13 22 353 31 312 5.07e-32 125
MsG0180005563.01.T01 MTR_4g039910 41.350 237 111 7 160 370 99 333 7.09e-29 115
MsG0180005563.01.T01 MTR_5g012870 33.213 277 145 7 162 409 113 378 4.11e-26 109
MsG0180005563.01.T01 MTR_4g019730 72.727 44 10 1 345 386 10 53 2.22e-15 72.8
MsG0180005563.01.T01 MTR_4g129510 33.962 265 150 8 162 412 118 371 1.14e-13 72.4
MsG0180005563.01.T01 MTR_4g129510 33.962 265 150 8 162 412 87 340 4.59e-13 70.5
MsG0180005563.01.T01 MTR_4g129510 52.000 125 54 1 162 286 118 236 1.14e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005563.01.T01 AT3G22810 59.959 482 122 16 1 421 1 472 2.77e-154 445
MsG0180005563.01.T01 AT4G14740 57.231 484 131 13 1 418 1 474 6.36e-149 431
MsG0180005563.01.T01 AT4G14740 57.231 484 131 13 1 418 1 474 6.36e-149 431
MsG0180005563.01.T01 AT5G43870 56.550 458 137 10 7 418 11 452 2.90e-132 388
MsG0180005563.01.T01 AT3G22810 64.800 375 97 15 1 350 1 365 3.97e-120 356
MsG0180005563.01.T01 AT4G14740 61.579 380 106 12 1 350 1 370 4.24e-118 350
MsG0180005563.01.T01 AT3G63300 53.564 491 140 17 10 419 7 490 4.76e-106 323
MsG0180005563.01.T01 AT3G22810 63.366 303 68 4 161 421 33 334 1.04e-102 308
MsG0180005563.01.T01 AT5G43870 61.017 354 112 9 7 350 11 348 1.09e-101 308
MsG0180005563.01.T01 AT4G14740 63.333 300 67 3 161 418 37 335 1.35e-99 300
MsG0180005563.01.T01 AT3G63300 59.211 304 82 6 154 418 31 331 1.19e-64 211
MsG0180005563.01.T01 AT5G47440 30.583 412 199 11 22 413 43 387 1.36e-28 116
MsG0180005563.01.T01 AT4G17350 36.823 277 138 8 162 409 115 383 5.40e-27 112
MsG0180005563.01.T01 AT4G32780 32.791 430 181 12 21 410 53 414 1.67e-23 102
MsG0180005563.01.T01 AT4G32780 32.791 430 181 12 21 410 34 395 1.78e-23 102
MsG0180005563.01.T01 AT4G16670 29.682 283 158 6 162 409 132 408 3.41e-20 92.4
MsG0180005563.01.T01 AT4G16670 40.588 170 88 2 162 323 132 296 2.50e-19 89.4
MsG0180005563.01.T01 AT4G16670 40.588 170 88 2 162 323 132 296 3.61e-19 89.0
MsG0180005563.01.T01 AT5G57770 37.963 216 114 5 162 359 128 341 1.52e-15 78.6
MsG0180005563.01.T01 AT5G57770 45.139 144 74 2 162 302 128 269 1.91e-15 77.4
MsG0180005563.01.T01 AT4G32780 35.521 259 117 6 21 276 53 264 3.34e-12 67.0

Find 165 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGCTTGTGGTGTTTC+TGG 0.157684 1:+93403630 None:intergenic
GAAATATGCATTGGGGTATT+TGG 0.162692 1:-93400519 MsG0180005563.01.T01:three_prime_UTR
ATTAATACAATATAAAATTA+TGG 0.203256 1:-93400248 MsG0180005563.01.T01:three_prime_UTR
GCAGCCACCGCCGCTTCGTC+TGG 0.211127 1:-93402365 MsG0180005563.01.T01:CDS
ATAAAGCTCAAACCCATTTC+TGG 0.227451 1:-93403689 MsG0180005563.01.T01:CDS
TCAGAGGAAGCAAAGGAAAA+TGG 0.240625 1:+93403456 None:intergenic
TCTTCTATGGTGGTGTTTAT+AGG 0.252498 1:+93403528 None:intergenic
TGTAAGCTTAAATAGTTATC+TGG 0.254925 1:-93402543 MsG0180005563.01.T01:CDS
GCTCACCGCTGAAGCTACTA+TGG 0.269009 1:+93401877 None:intergenic
AGCAAAGGAAAATGGGTTTA+AGG 0.281335 1:+93403464 None:intergenic
TCTGTGTCTCCAAGAACTTC+AGG 0.287973 1:-93403267 MsG0180005563.01.T01:CDS
AGAAGAAGAGGAGAGAGTTT+TGG 0.301084 1:+93403563 None:intergenic
ATTCCTGTGGAGAGAAGTTT+GGG 0.323759 1:-93401930 MsG0180005563.01.T01:CDS
ACAGGACAACTATCTGTTAA+AGG 0.327867 1:+93403222 None:intergenic
GGATAGAAAGGAGAAGAAAA+AGG 0.331067 1:-93402468 MsG0180005563.01.T01:CDS
TGGAGTTTCTCTCACGTTCA+TGG 0.340417 1:-93403608 MsG0180005563.01.T01:CDS
CAATATAAAATTATGGGCTT+TGG 0.341496 1:-93400241 MsG0180005563.01.T01:three_prime_UTR
TGAAACCACTCAAATGATAA+TGG 0.341964 1:-93403436 MsG0180005563.01.T01:CDS
CGAGGGCATTGAAGGAAGTT+TGG 0.344004 1:-93401968 MsG0180005563.01.T01:CDS
AAATTATGGGCTTTGGCTCC+TGG 0.344786 1:-93400234 MsG0180005563.01.T01:three_prime_UTR
AATGGGGAAAGAATCATATT+AGG 0.349637 1:-93400379 MsG0180005563.01.T01:three_prime_UTR
GAGAGTCTCCCTGAAGTTCT+TGG 0.351457 1:+93403258 None:intergenic
TTAATACAATATAAAATTAT+GGG 0.359321 1:-93400247 MsG0180005563.01.T01:three_prime_UTR
AGTTGGGGTTACTTTAATCT+TGG 0.360475 1:-93400542 MsG0180005563.01.T01:three_prime_UTR
GATTCCTGTGGAGAGAAGTT+TGG 0.362060 1:-93401931 MsG0180005563.01.T01:CDS
AGGCAAAAGGTATGCCAGTT+GGG 0.368488 1:-93400558 MsG0180005563.01.T01:three_prime_UTR
GGTGGTGTTTATAGGAGGTT+TGG 0.369428 1:+93403536 None:intergenic
AGCGAATAGTGACTCGGCTT+TGG 0.378325 1:-93402321 MsG0180005563.01.T01:CDS
CAGAGGAAGCAAAGGAAAAT+GGG 0.383629 1:+93403457 None:intergenic
GTGGGTCGGGTCTCCAGAAA+TGG 0.392955 1:+93403676 None:intergenic
ATGGGCTTTGGCTCCTGGGT+TGG 0.393202 1:-93400229 MsG0180005563.01.T01:three_prime_UTR
GAAAATGAAAATGAGTATCT+TGG 0.397997 1:-93400422 MsG0180005563.01.T01:three_prime_UTR
GTTGAGACTGCAGAGGCGTT+GGG 0.398723 1:-93402266 MsG0180005563.01.T01:CDS
GGCAGACCACCTGGTGGTGG+TGG 0.399889 1:-93402518 MsG0180005563.01.T01:CDS
AATCTTGGGAAATATGCATT+GGG 0.403290 1:-93400527 MsG0180005563.01.T01:three_prime_UTR
AACAGAGGAGGTTTCTTCTT+CGG 0.406189 1:+93403488 None:intergenic
ACCGCCGCTTCGTCTGGGTC+TGG 0.406896 1:-93402359 MsG0180005563.01.T01:CDS
TTAACTGCTGCTGCTGCAAC+AGG 0.412989 1:-93402170 MsG0180005563.01.T01:intron
CAGATACCGCAGCATGAACC+TGG 0.413528 1:+93402423 None:intergenic
GTTGGGGTTACTTTAATCTT+GGG 0.415960 1:-93400541 MsG0180005563.01.T01:three_prime_UTR
AGACCACCTGGTGGTGGTGG+TGG 0.418708 1:-93402515 MsG0180005563.01.T01:CDS
AGCATGAACCTGGGCATTGT+GGG 0.420669 1:+93402433 None:intergenic
TCGATTTCAGATGGTGAAAC+AGG 0.421017 1:+93403204 None:intergenic
ATTGAAAGCGAGGGCATTGA+AGG 0.436129 1:-93401976 MsG0180005563.01.T01:CDS
CAGCCACCGCCGCTTCGTCT+GGG 0.436691 1:-93402364 MsG0180005563.01.T01:CDS
GGCTTCTGCAGCAACGTTGG+TGG 0.436826 1:-93402300 MsG0180005563.01.T01:CDS
TAATCTTGGGAAATATGCAT+TGG 0.440071 1:-93400528 MsG0180005563.01.T01:three_prime_UTR
CTTCAGAAGTTCACAACCTC+TGG 0.443601 1:+93401803 None:intergenic
AATTATGGGCTTTGGCTCCT+GGG 0.444167 1:-93400233 MsG0180005563.01.T01:three_prime_UTR
GGTTTCTTCTTCGGTTTCTC+CGG 0.446422 1:+93403497 None:intergenic
GGTGGCAGACCACCTGGTGG+TGG 0.447164 1:-93402521 MsG0180005563.01.T01:CDS
GTGGACGGGACGCCATTTGC+TGG 0.450660 1:-93400877 MsG0180005563.01.T01:CDS
GAGAAGAGAATAGAAGATTG+AGG 0.451721 1:+93403747 None:intergenic
AGAAGAGAATAGAAGATTGA+GGG 0.452206 1:+93403748 None:intergenic
TGTACCTGAAGATAATTTCT+CGG 0.455360 1:-93401853 MsG0180005563.01.T01:CDS
ATGGAAGAGTGAAGTGGGTC+GGG 0.467808 1:+93403663 None:intergenic
GGTGAGAATCGTCGCTACTT+TGG 0.470784 1:-93400849 MsG0180005563.01.T01:CDS
AAGATTAAAGTAACCCCAAC+TGG 0.475311 1:+93400544 None:intergenic
GACGGTTGGAAGATGGCTTA+AGG 0.476572 1:-93402489 MsG0180005563.01.T01:CDS
GCCGTGAATGTTAGATCTGC+TGG 0.478252 1:-93402206 MsG0180005563.01.T01:CDS
GAAAATGAGTATCTTGGACT+AGG 0.480373 1:-93400416 MsG0180005563.01.T01:three_prime_UTR
TCTCACCGCCTTCCAGCAAA+TGG 0.482869 1:+93400865 None:intergenic
CTGTGTCTCCAAGAACTTCA+GGG 0.484560 1:-93403266 MsG0180005563.01.T01:CDS
AGACCCAGACGAAGCGGCGG+TGG 0.489654 1:+93402361 None:intergenic
TTTGGCTTCTGCAGCAACGT+TGG 0.493716 1:-93402303 MsG0180005563.01.T01:CDS
AAGATGGCTTAAGGATAGAA+AGG 0.499120 1:-93402480 MsG0180005563.01.T01:CDS
TGTTGAGACTGCAGAGGCGT+TGG 0.500590 1:-93402267 MsG0180005563.01.T01:CDS
TCTTCCCTGCAGTACGGCCG+TGG 0.502954 1:-93402578 MsG0180005563.01.T01:intron
CACCCACTCGCTCTCTCTCA+TGG 0.503010 1:-93403712 MsG0180005563.01.T01:exon
CAGCATGAACCTGGGCATTG+TGG 0.503265 1:+93402432 None:intergenic
AAAGATATGCCCGCGTGGAC+GGG 0.506938 1:-93400891 MsG0180005563.01.T01:CDS
TCTCAGCTGCAATGGAAAGC+AGG 0.508738 1:+93400742 None:intergenic
AGGTTTGGAAGAAGAAGAAG+AGG 0.509796 1:+93403551 None:intergenic
AAAATGAGTATCTTGGACTA+GGG 0.511166 1:-93400415 MsG0180005563.01.T01:three_prime_UTR
TTCTGCAGCAACGTTGGTGG+CGG 0.514743 1:-93402297 MsG0180005563.01.T01:CDS
TTGAGCTCCTGTTCTGAGGG+GGG 0.518041 1:-93400700 MsG0180005563.01.T01:exon
GTGGTAAGACGGTTGGAAGA+TGG 0.518581 1:-93402496 MsG0180005563.01.T01:CDS
TGACTGACACACAATACAAT+CGG 0.518611 1:-93403839 None:intergenic
GGTGGTGGTGGTAAGACGGT+TGG 0.518939 1:-93402503 MsG0180005563.01.T01:CDS
TTTGAGCTCCTGTTCTGAGG+GGG 0.519648 1:-93400701 MsG0180005563.01.T01:exon
GCTTCTGGTGGTAATGGTAA+TGG 0.519867 1:-93401906 MsG0180005563.01.T01:CDS
GTACCTGAAGATAATTTCTC+GGG 0.522129 1:-93401852 MsG0180005563.01.T01:CDS
TATCTGGGTGGCAGACCACC+TGG 0.524730 1:-93402527 MsG0180005563.01.T01:CDS
GCTGTTCTTCTCAGCTGCAA+TGG 0.525858 1:+93400734 None:intergenic
GTACCCGAGAAATTATCTTC+AGG 0.529680 1:+93401849 None:intergenic
ATACAACTATAGTTCACATT+GGG 0.530833 1:+93400471 None:intergenic
CGGAACATGGAAGAGTGAAG+TGG 0.533073 1:+93403657 None:intergenic
GGGAGAAATTTAGGCAATGG+GGG 0.535550 1:-93400680 MsG0180005563.01.T01:three_prime_UTR
TCTATGGTGGTGTTTATAGG+AGG 0.537077 1:+93403531 None:intergenic
TTACACCGCCGTTGTTTCCA+CGG 0.537355 1:+93402561 None:intergenic
TGTTTCTGGTGGACGGAACA+TGG 0.537758 1:+93403644 None:intergenic
GTAAGCTTAAATAGTTATCT+GGG 0.538154 1:-93402542 MsG0180005563.01.T01:CDS
CAAAGATATGCCCGCGTGGA+CGG 0.539246 1:-93400892 MsG0180005563.01.T01:CDS
ACGGGAACACCTTGCTGCGG+TGG 0.539252 1:-93402237 MsG0180005563.01.T01:CDS
AAGGCAAAAGGTATGCCAGT+TGG 0.541356 1:-93400559 MsG0180005563.01.T01:three_prime_UTR
ATCTGAAATCGACGATATCA+AGG 0.541670 1:-93403193 MsG0180005563.01.T01:intron
TGGGTCGGGTCTCCAGAAAT+GGG 0.543717 1:+93403677 None:intergenic
AGCAAGGGCCCACAATGCCC+AGG 0.543868 1:-93402441 MsG0180005563.01.T01:CDS
CTTGTGGTGTTTCTGGTGGA+CGG 0.553644 1:+93403637 None:intergenic
GGGGAAAGAATCATATTAGG+AGG 0.554020 1:-93400376 MsG0180005563.01.T01:three_prime_UTR
GCGTTCCATTATCATTTGAG+TGG 0.554237 1:+93403431 None:intergenic
AGAAACACCACAAGCACCAA+TGG 0.558033 1:-93403628 MsG0180005563.01.T01:CDS
AGAGTATGATGTGTGGACTC+AGG 0.560327 1:-93400775 MsG0180005563.01.T01:CDS
GTGTTGTTGTAGCTTTGCGT+GGG 0.562118 1:-93402007 MsG0180005563.01.T01:intron
AATGTGCAAACAACACAGAT+AGG 0.562501 1:+93400321 None:intergenic
TGGGTTTAAGGAAACAGAGG+AGG 0.566625 1:+93403476 None:intergenic
CTTCTGAAGCGCACACGCAA+AGG 0.567901 1:-93401789 MsG0180005563.01.T01:intron
TTGATATCGTCGATTTCAGA+TGG 0.568899 1:+93403195 None:intergenic
CATGGAAGAGTGAAGTGGGT+CGG 0.569299 1:+93403662 None:intergenic
ACGGGACGCCATTTGCTGGA+AGG 0.572423 1:-93400873 MsG0180005563.01.T01:CDS
AGAAACTCCATTGGTGCTTG+TGG 0.572480 1:+93403621 None:intergenic
TGCAGCAATTGCAGCTACTG+CGG 0.572535 1:+93402385 None:intergenic
TTGAGACTGCAGAGGCGTTG+GGG 0.573228 1:-93402265 MsG0180005563.01.T01:CDS
AGTGGTTTCAGAGGAAGCAA+AGG 0.575283 1:+93403449 None:intergenic
AATACAACTATAGTTCACAT+TGG 0.577034 1:+93400470 None:intergenic
TCCTGTGGAGAGAAGTTTGG+GGG 0.582754 1:-93401928 MsG0180005563.01.T01:CDS
GGGAAAGAATCATATTAGGA+GGG 0.583654 1:-93400375 MsG0180005563.01.T01:three_prime_UTR
GGGGAGAAATTTAGGCAATG+GGG 0.590118 1:-93400681 MsG0180005563.01.T01:three_prime_UTR
ACCAGCAGATCTAACATTCA+CGG 0.590450 1:+93402205 None:intergenic
GGTGCTTGTGGTGTTTCTGG+TGG 0.594073 1:+93403633 None:intergenic
GGCAAAAGGTATGCCAGTTG+GGG 0.595796 1:-93400557 MsG0180005563.01.T01:three_prime_UTR
GGGCTGCAACATTGAAAGCG+AGG 0.600321 1:-93401986 MsG0180005563.01.T01:CDS
TGTGTTGTTGTAGCTTTGCG+TGG 0.600647 1:-93402008 MsG0180005563.01.T01:intron
TCCAGACCCAGACGAAGCGG+CGG 0.601265 1:+93402358 None:intergenic
TATCATTTGAGTGGTTTCAG+AGG 0.602274 1:+93403440 None:intergenic
AGCAATTGCAGCTACTGCGG+CGG 0.603464 1:+93402388 None:intergenic
TGAGACTGCAGAGGCGTTGG+GGG 0.605085 1:-93402264 MsG0180005563.01.T01:CDS
GAGTATGATGTGTGGACTCA+GGG 0.611655 1:-93400774 MsG0180005563.01.T01:CDS
GGTTCATGCTGCGGTATCTG+TGG 0.615364 1:-93402420 MsG0180005563.01.T01:CDS
CTCACCGCTGAAGCTACTAT+GGG 0.618283 1:+93401878 None:intergenic
ACCATAGAAGAAAACATCAC+CGG 0.620032 1:-93403516 MsG0180005563.01.T01:CDS
CAGTACGGCCGTGGAAACAA+CGG 0.622108 1:-93402569 MsG0180005563.01.T01:CDS
AAGAGAATAGAAGAGCAGAG+AGG 0.624385 1:+93403787 None:intergenic
AAATGGGTTTAAGGAAACAG+AGG 0.625133 1:+93403473 None:intergenic
GAACGTGAGAGAAACTCCAT+TGG 0.627617 1:+93403612 None:intergenic
GGCTGCAACATTGAAAGCGA+GGG 0.631800 1:-93401985 MsG0180005563.01.T01:CDS
CAATGCCCAGGTTCATGCTG+CGG 0.633356 1:-93402429 MsG0180005563.01.T01:CDS
GGAACATGGAAGAGTGAAGT+GGG 0.633559 1:+93403658 None:intergenic
AAATGGCGTCCCGTCCACGC+GGG 0.636753 1:+93400882 None:intergenic
TATCCATGAGAGAGAGCGAG+TGG 0.640295 1:+93403709 None:intergenic
TTTGATCAATGATAAAGGGG+GGG 0.640872 1:-93400599 MsG0180005563.01.T01:three_prime_UTR
AGTAGAGAATTACTTGCCAG+AGG 0.643361 1:-93401819 MsG0180005563.01.T01:CDS
GGGAGACTCTCACACAGTAG+TGG 0.643580 1:-93403246 MsG0180005563.01.T01:CDS
ATCTTGGGAAATATGCATTG+GGG 0.649049 1:-93400526 MsG0180005563.01.T01:three_prime_UTR
GGACGCCATTTGCTGGAAGG+CGG 0.651970 1:-93400870 MsG0180005563.01.T01:CDS
GGAACGGGAACACCTTGCTG+CGG 0.652259 1:-93402240 MsG0180005563.01.T01:CDS
TTCCTGTGGAGAGAAGTTTG+GGG 0.655019 1:-93401929 MsG0180005563.01.T01:CDS
CGGAGTTAACCACCGCAGCA+AGG 0.656849 1:+93402228 None:intergenic
GTCTGGGTCTGGAAAAGACG+AGG 0.656862 1:-93402348 MsG0180005563.01.T01:CDS
AGATACCGCAGCATGAACCT+GGG 0.662936 1:+93402424 None:intergenic
AGTTCCCATAGTAGCTTCAG+CGG 0.663806 1:-93401882 MsG0180005563.01.T01:CDS
CAAATGGCGTCCCGTCCACG+CGG 0.674933 1:+93400881 None:intergenic
CTGGGTGGCAGACCACCTGG+TGG 0.677295 1:-93402524 MsG0180005563.01.T01:CDS
TATTGCAGCAGTGATTCCTG+TGG 0.684636 1:-93401943 MsG0180005563.01.T01:CDS
AGCTTAAATAGTTATCTGGG+TGG 0.684648 1:-93402539 MsG0180005563.01.T01:CDS
ATCCATGAGAGAGAGCGAGT+GGG 0.688769 1:+93403710 None:intergenic
GGAGAAAGCGAATAGTGACT+CGG 0.696370 1:-93402327 MsG0180005563.01.T01:CDS
TGTTGTTGTAGCTTTGCGTG+GGG 0.698828 1:-93402006 MsG0180005563.01.T01:intron
TCAGTGTGTTGAGACTGCAG+AGG 0.701979 1:-93402273 MsG0180005563.01.T01:CDS
ATCAAAGAGAGTATGATGTG+TGG 0.717389 1:-93400782 MsG0180005563.01.T01:CDS
GGATTGAAAACATTATTGCG+TGG 0.721694 1:-93400828 MsG0180005563.01.T01:CDS
TACGGCCGTGGAAACAACGG+CGG 0.736881 1:-93402566 MsG0180005563.01.T01:CDS
ATAGTTCAAAGATCCAACCC+AGG 0.737894 1:+93400216 None:intergenic
TGATCAAAGATATGCCCGCG+TGG 0.739134 1:-93400896 MsG0180005563.01.T01:CDS
AGCAGATCTAACATTCACGG+CGG 0.776495 1:+93402208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAATTAATTTAAT+GGG + Chr1:93400994-93401013 None:intergenic 0.0%
!! TAAATTAATAATTAATTTAA+TGG + Chr1:93400995-93401014 None:intergenic 0.0%
!! TATTAATTAGTAATTTACAT+TGG + Chr1:93400949-93400968 None:intergenic 10.0%
!!! AAAATTTTTTTTTGTTTTGT+AGG - Chr1:93400760-93400779 MsG0180005563.01.T01:CDS 10.0%
!!! AATTTAATGTAAATTTTTAG+AGG - Chr1:93402377-93402396 MsG0180005563.01.T01:CDS 10.0%
!!! TTTTTTTTTGTTGTAATAAA+TGG + Chr1:93402559-93402578 None:intergenic 10.0%
!! ATATATAAACAAAATGAATC+AGG - Chr1:93402691-93402710 MsG0180005563.01.T01:intron 15.0%
!! ATGATAAAAACAAAATTTCA+AGG - Chr1:93401929-93401948 MsG0180005563.01.T01:CDS 15.0%
!! TAATTATTTAACAACAGATT+TGG - Chr1:93403033-93403052 MsG0180005563.01.T01:intron 15.0%
!! TTTGTTCAAATTAATTACAA+AGG - Chr1:93401320-93401339 MsG0180005563.01.T01:intron 15.0%
!!! AGGAATTTTTTATTGAATAA+TGG - Chr1:93401394-93401413 MsG0180005563.01.T01:intron 15.0%
!!! ATGAAATATTTTCATGTAAA+TGG - Chr1:93402325-93402344 MsG0180005563.01.T01:CDS 15.0%
!! AATCAGTCACTTAATTATTT+GGG - Chr1:93402775-93402794 MsG0180005563.01.T01:intron 20.0%
!! ACAAAGTTTACTAAAAATAG+TGG + Chr1:93401082-93401101 None:intergenic 20.0%
!! ATGAAAAAGTTATATGAAGT+GGG - Chr1:93402834-93402853 MsG0180005563.01.T01:intron 20.0%
!! CAAAGTTTACTAAAAATAGT+GGG + Chr1:93401081-93401100 None:intergenic 20.0%
!! CTGTAAATTCAAAACATAAA+GGG + Chr1:93403127-93403146 None:intergenic 20.0%
!! CTTAAAGCTAAAATCAATTA+TGG - Chr1:93402419-93402438 MsG0180005563.01.T01:CDS 20.0%
!! TAATCAGTCACTTAATTATT+TGG - Chr1:93402774-93402793 MsG0180005563.01.T01:intron 20.0%
!! TAATTAGTAATTTACATTGG+AGG + Chr1:93400946-93400965 None:intergenic 20.0%
!! TATATTTCTTATTGTGTGTT+TGG - Chr1:93402292-93402311 MsG0180005563.01.T01:CDS 20.0%
!! TCTGTAAATTCAAAACATAA+AGG + Chr1:93403128-93403147 None:intergenic 20.0%
!! TTTGAAAATTCTTTATGTGA+AGG - Chr1:93402915-93402934 MsG0180005563.01.T01:intron 20.0%
!!! ACCTTTTTTTTTTTCTTCTT+CGG - Chr1:93400702-93400721 MsG0180005563.01.T01:exon 20.0%
!!! ACTCTTTTTCTTTTTCTTAA+TGG + Chr1:93402977-93402996 None:intergenic 20.0%
!!! ATAAAAGCACAATATTGTTA+AGG + Chr1:93402737-93402756 None:intergenic 20.0%
!!! ATTTTTTTTTGTTTTGTAGG+AGG - Chr1:93400763-93400782 MsG0180005563.01.T01:CDS 20.0%
!!! CATAATTGATTTTAGCTTTA+AGG + Chr1:93402421-93402440 None:intergenic 20.0%
!!! CTATAGATCTTTTTGATATA+TGG - Chr1:93403430-93403449 MsG0180005563.01.T01:CDS 20.0%
!!! TGTAATTTAGGACAAATTTT+GGG + Chr1:93401202-93401221 None:intergenic 20.0%
!!! TTCACATAAAGAATTTTCAA+AGG + Chr1:93402916-93402935 None:intergenic 20.0%
!!! TTTTGACTACTTTTGTTTTA+AGG + Chr1:93403773-93403792 None:intergenic 20.0%
! AAAAAGATCTATAGTGCTAA+GGG + Chr1:93403424-93403443 None:intergenic 25.0%
! AAAATTGTACGCTGTAATTT+AGG + Chr1:93401214-93401233 None:intergenic 25.0%
! AAAGCTAAAATCAATTATGG+AGG - Chr1:93402422-93402441 MsG0180005563.01.T01:CDS 25.0%
! AACATCATAAGACTAGAAAA+TGG + Chr1:93402602-93402621 None:intergenic 25.0%
! AATACAACTATAGTTCACAT+TGG + Chr1:93403591-93403610 None:intergenic 25.0%
! AATTCAAAACATAAAGGGAA+TGG + Chr1:93403122-93403141 None:intergenic 25.0%
! ACGAAAAGAATAAATCATTG+TGG + Chr1:93401294-93401313 None:intergenic 25.0%
! ATAAGACTAGAAAATGGAAA+GGG + Chr1:93402596-93402615 None:intergenic 25.0%
! ATACAACTATAGTTCACATT+GGG + Chr1:93403590-93403609 None:intergenic 25.0%
! CAATATAAAATTATGGGCTT+TGG - Chr1:93403817-93403836 MsG0180005563.01.T01:five_prime_UTR 25.0%
! CATGAAAAAGTTATATGAAG+TGG - Chr1:93402833-93402852 MsG0180005563.01.T01:intron 25.0%
! GAAAATGAAAATGAGTATCT+TGG - Chr1:93403636-93403655 MsG0180005563.01.T01:CDS 25.0%
! GTAAGCTTAAATAGTTATCT+GGG - Chr1:93401516-93401535 MsG0180005563.01.T01:intron 25.0%
! TCAATAAAAAATTCCTTCCA+TGG + Chr1:93401390-93401409 None:intergenic 25.0%
! TCCGAAGAAGAAAAAAAAAA+AGG + Chr1:93400706-93400725 None:intergenic 25.0%
! TGAAAAAGTTATATGAAGTG+GGG - Chr1:93402835-93402854 MsG0180005563.01.T01:intron 25.0%
! TGATTCTTAAGACTTGATAT+TGG + Chr1:93402486-93402505 None:intergenic 25.0%
! TGTAAGCTTAAATAGTTATC+TGG - Chr1:93401515-93401534 MsG0180005563.01.T01:intron 25.0%
! TTATTTAACAACAGATTTGG+AGG - Chr1:93403036-93403055 MsG0180005563.01.T01:intron 25.0%
!! AGATCTTTTTGATATATGGT+GGG - Chr1:93403434-93403453 MsG0180005563.01.T01:CDS 25.0%
!! AGTTTGTATGTTGATGTTTT+TGG - Chr1:93401999-93402018 MsG0180005563.01.T01:intron 25.0%
!! TAGATCTTTTTGATATATGG+TGG - Chr1:93403433-93403452 MsG0180005563.01.T01:CDS 25.0%
!! TGTTCTTTTCATCACTATTA+TGG - Chr1:93403610-93403629 MsG0180005563.01.T01:CDS 25.0%
!! TTACTCTAAAAATGAAGAGT+AGG - Chr1:93402938-93402957 MsG0180005563.01.T01:intron 25.0%
!!! ATATTGGTTTTAGTGTTTGA+TGG + Chr1:93402470-93402489 None:intergenic 25.0%
!!! ATGTATTTGTTTTGTTTACC+TGG - Chr1:93401132-93401151 MsG0180005563.01.T01:intron 25.0%
!!! ATTGATTTTAGCTTTAAGGT+AGG + Chr1:93402417-93402436 None:intergenic 25.0%
!!! CATTTTCTGAAAATGTGAAT+TGG - Chr1:93401958-93401977 MsG0180005563.01.T01:CDS 25.0%
!!! CTGTAATTTAGGACAAATTT+TGG + Chr1:93401203-93401222 None:intergenic 25.0%
!!! TTTTTGTTGTAATAAATGGC+AGG + Chr1:93402555-93402574 None:intergenic 25.0%
!!! TTTTTTTGTCCTTGTTATGA+AGG - Chr1:93401352-93401371 MsG0180005563.01.T01:intron 25.0%
AAAATGAGTATCTTGGACTA+GGG - Chr1:93403643-93403662 MsG0180005563.01.T01:CDS 30.0%
AATCTTGGGAAATATGCATT+GGG - Chr1:93403531-93403550 MsG0180005563.01.T01:CDS 30.0%
AATGGGGAAAGAATCATATT+AGG - Chr1:93403679-93403698 MsG0180005563.01.T01:CDS 30.0%
AGAAGAGAATAGAAGATTGA+GGG + Chr1:93400313-93400332 None:intergenic 30.0%
AGCTAAAAACTAAAGGCAAA+AGG - Chr1:93403487-93403506 MsG0180005563.01.T01:CDS 30.0%
CAAAAAGATCTATAGTGCTA+AGG + Chr1:93403425-93403444 None:intergenic 30.0%
CATAAGACTAGAAAATGGAA+AGG + Chr1:93402597-93402616 None:intergenic 30.0%
CATTCACCTTATCATACTAA+AGG + Chr1:93402864-93402883 None:intergenic 30.0%
CTAACAGAAAATCGTCAAAT+TGG - Chr1:93401165-93401184 MsG0180005563.01.T01:intron 30.0%
GAAAAAGTTATATGAAGTGG+GGG - Chr1:93402836-93402855 MsG0180005563.01.T01:intron 30.0%
GAATAAATCATTGTGGCATA+AGG + Chr1:93401287-93401306 None:intergenic 30.0%
GACTGATTATTGAGTACTAA+AGG + Chr1:93402763-93402782 None:intergenic 30.0%
GTTTCTATTCCTTCATAACA+AGG + Chr1:93401364-93401383 None:intergenic 30.0%
TAATCTTGGGAAATATGCAT+TGG - Chr1:93403530-93403549 MsG0180005563.01.T01:CDS 30.0%
TGAAACCACTCAAATGATAA+TGG - Chr1:93400622-93400641 MsG0180005563.01.T01:three_prime_UTR 30.0%
TGTACCTGAAGATAATTTCT+CGG - Chr1:93402205-93402224 MsG0180005563.01.T01:CDS 30.0%
TTCCATTTAAGGATTTGTGA+GGG - Chr1:93403068-93403087 MsG0180005563.01.T01:intron 30.0%
! ACGATTTTCTGTTAGATTGT+AGG + Chr1:93401160-93401179 None:intergenic 30.0%
! CGATTTTCTGTTAGATTGTA+GGG + Chr1:93401159-93401178 None:intergenic 30.0%
! GATCTTTTTGATATATGGTG+GGG - Chr1:93403435-93403454 MsG0180005563.01.T01:CDS 30.0%
! TTTTGATCAATGATAAAGGG+GGG - Chr1:93403458-93403477 MsG0180005563.01.T01:CDS 30.0%
!! AATTTAGGACAAATTTTGGG+TGG + Chr1:93401199-93401218 None:intergenic 30.0%
!! GGGTTTTGATCAATGATAAA+GGG - Chr1:93403455-93403474 MsG0180005563.01.T01:CDS 30.0%
!! GGTTTTGATCAATGATAAAG+GGG - Chr1:93403456-93403475 MsG0180005563.01.T01:CDS 30.0%
!! GTTTTGATCAATGATAAAGG+GGG - Chr1:93403457-93403476 MsG0180005563.01.T01:CDS 30.0%
AAGATGGCTTAAGGATAGAA+AGG - Chr1:93401578-93401597 MsG0180005563.01.T01:intron 35.0%
AAGATTAAAGTAACCCCAAC+TGG + Chr1:93403517-93403536 None:intergenic 35.0%
AATGTGCAAACAACACAGAT+AGG + Chr1:93403740-93403759 None:intergenic 35.0%
ACAGGACAACTATCTGTTAA+AGG + Chr1:93400839-93400858 None:intergenic 35.0%
ACCATAGAAGAAAACATCAC+CGG - Chr1:93400542-93400561 MsG0180005563.01.T01:three_prime_UTR 35.0%
AGAAGAAAAAGGAAGAAGCA+AGG - Chr1:93401601-93401620 MsG0180005563.01.T01:intron 35.0%
AGCTTAAATAGTTATCTGGG+TGG - Chr1:93401519-93401538 MsG0180005563.01.T01:intron 35.0%
AGGGAACAGTCAAAAAGAAT+GGG - Chr1:93403662-93403681 MsG0180005563.01.T01:CDS 35.0%
ATAAAGCTCAAACCCATTTC+TGG - Chr1:93400369-93400388 MsG0180005563.01.T01:three_prime_UTR 35.0%
ATCTTGGGAAATATGCATTG+GGG - Chr1:93403532-93403551 MsG0180005563.01.T01:CDS 35.0%
GAAAATGAGTATCTTGGACT+AGG - Chr1:93403642-93403661 MsG0180005563.01.T01:CDS 35.0%
GAAGAAAAAGGAAGAAGCAA+GGG - Chr1:93401602-93401621 MsG0180005563.01.T01:intron 35.0%
GAAGGAATAGAAACAAACCA+TGG - Chr1:93401370-93401389 MsG0180005563.01.T01:intron 35.0%
GAATAGAAACAAACCATGGA+AGG - Chr1:93401374-93401393 MsG0180005563.01.T01:intron 35.0%
GAGAAGAGAATAGAAGATTG+AGG + Chr1:93400314-93400333 None:intergenic 35.0%
GGATAGAAAGGAGAAGAAAA+AGG - Chr1:93401590-93401609 MsG0180005563.01.T01:intron 35.0%
GGATTGAAAACATTATTGCG+TGG - Chr1:93403230-93403249 MsG0180005563.01.T01:CDS 35.0%
GGCTGTAAGCTAAAAACTAA+AGG - Chr1:93403480-93403499 MsG0180005563.01.T01:CDS 35.0%
GGGAAAGAATCATATTAGGA+GGG - Chr1:93403683-93403702 MsG0180005563.01.T01:CDS 35.0%
GTACCTGAAGATAATTTCTC+GGG - Chr1:93402206-93402225 MsG0180005563.01.T01:CDS 35.0%
GTATTGTAACCCCAAAAACA+TGG - Chr1:93401446-93401465 MsG0180005563.01.T01:intron 35.0%
GTTCCATTTAAGGATTTGTG+AGG - Chr1:93403067-93403086 MsG0180005563.01.T01:intron 35.0%
TAGGGAACAGTCAAAAAGAA+TGG - Chr1:93403661-93403680 MsG0180005563.01.T01:CDS 35.0%
TATCATTTGAGTGGTTTCAG+AGG + Chr1:93400621-93400640 None:intergenic 35.0%
TATGCATGTTGTGTTGTAGA+AGG + Chr1:93400674-93400693 None:intergenic 35.0%
TCCATTTAAGGATTTGTGAG+GGG - Chr1:93403069-93403088 MsG0180005563.01.T01:intron 35.0%
TTAACAACAGATTTGGAGGT+GGG - Chr1:93403040-93403059 MsG0180005563.01.T01:intron 35.0%
TTGTGTTGTAGAAGGACTTA+CGG + Chr1:93400666-93400685 None:intergenic 35.0%
TTTAACAACAGATTTGGAGG+TGG - Chr1:93403039-93403058 MsG0180005563.01.T01:intron 35.0%
TTTGATCAATGATAAAGGGG+GGG - Chr1:93403459-93403478 MsG0180005563.01.T01:CDS 35.0%
! AAATGGGTTTAAGGAAACAG+AGG + Chr1:93400588-93400607 None:intergenic 35.0%
! AGCAAAGGAAAATGGGTTTA+AGG + Chr1:93400597-93400616 None:intergenic 35.0%
! AGTTGGGGTTACTTTAATCT+TGG - Chr1:93403516-93403535 MsG0180005563.01.T01:CDS 35.0%
! ATCAAAGAGAGTATGATGTG+TGG - Chr1:93403276-93403295 MsG0180005563.01.T01:CDS 35.0%
! ATCTGAAATCGACGATATCA+AGG - Chr1:93400865-93400884 MsG0180005563.01.T01:CDS 35.0%
! ATGCATAGAAGCCATGTTTT+TGG + Chr1:93401460-93401479 None:intergenic 35.0%
! GAAATATGCATTGGGGTATT+TGG - Chr1:93403539-93403558 MsG0180005563.01.T01:CDS 35.0%
! GTTGGGGTTACTTTAATCTT+GGG - Chr1:93403517-93403536 MsG0180005563.01.T01:CDS 35.0%
! TCTTCTATGGTGGTGTTTAT+AGG + Chr1:93400533-93400552 None:intergenic 35.0%
! TGCATAGAAGCCATGTTTTT+GGG + Chr1:93401459-93401478 None:intergenic 35.0%
!! GGGGTTTTGATCAATGATAA+AGG - Chr1:93403454-93403473 MsG0180005563.01.T01:CDS 35.0%
!! TTGATATCGTCGATTTCAGA+TGG + Chr1:93400866-93400885 None:intergenic 35.0%
!!! TATGTTGATGTTTTTGGCGT+CGG - Chr1:93402005-93402024 MsG0180005563.01.T01:intron 35.0%
AACAGAGGAGGTTTCTTCTT+CGG + Chr1:93400573-93400592 None:intergenic 40.0%
AAGAGAATAGAAGAGCAGAG+AGG + Chr1:93400274-93400293 None:intergenic 40.0%
ACCAGCAGATCTAACATTCA+CGG + Chr1:93401856-93401875 None:intergenic 40.0%
AGGTTTGGAAGAAGAAGAAG+AGG + Chr1:93400510-93400529 None:intergenic 40.0%
AGTAGAGAATTACTTGCCAG+AGG - Chr1:93402239-93402258 MsG0180005563.01.T01:CDS 40.0%
ATTCCTGTGGAGAGAAGTTT+GGG - Chr1:93402128-93402147 MsG0180005563.01.T01:intron 40.0%
ATTGAATCCAAACACGCACT+TGG - Chr1:93402523-93402542 MsG0180005563.01.T01:CDS 40.0%
CAACCATTAATGCAGAGAGA+GGG + Chr1:93401245-93401264 None:intergenic 40.0%
CAGAGGAAGCAAAGGAAAAT+GGG + Chr1:93400604-93400623 None:intergenic 40.0%
GCGTTCCATTATCATTTGAG+TGG + Chr1:93400630-93400649 None:intergenic 40.0%
GGGAACAGTCAAAAAGAATG+GGG - Chr1:93403663-93403682 MsG0180005563.01.T01:CDS 40.0%
GGGGAAAGAATCATATTAGG+AGG - Chr1:93403682-93403701 MsG0180005563.01.T01:CDS 40.0%
GTAAAATCCAAGTGCGTGTT+TGG + Chr1:93402533-93402552 None:intergenic 40.0%
GTACCCGAGAAATTATCTTC+AGG + Chr1:93402212-93402231 None:intergenic 40.0%
GTTGAAGATTGTGCAGATGA+AGG - Chr1:93401261-93401280 MsG0180005563.01.T01:intron 40.0%
TATCCCTCTCTCTGCATTAA+TGG - Chr1:93401239-93401258 MsG0180005563.01.T01:intron 40.0%
TCAACCATTAATGCAGAGAG+AGG + Chr1:93401246-93401265 None:intergenic 40.0%
TCAGAGGAAGCAAAGGAAAA+TGG + Chr1:93400605-93400624 None:intergenic 40.0%
TCGATTTCAGATGGTGAAAC+AGG + Chr1:93400857-93400876 None:intergenic 40.0%
! AGAAGAAGAGGAGAGAGTTT+TGG + Chr1:93400498-93400517 None:intergenic 40.0%
! ATTTTGAGCTCCTGTTCTGA+GGG - Chr1:93403355-93403374 MsG0180005563.01.T01:intron 40.0%
! GGTGATGTTTTCTTCTATGG+TGG + Chr1:93400543-93400562 None:intergenic 40.0%
! TCCGGTGATGTTTTCTTCTA+TGG + Chr1:93400546-93400565 None:intergenic 40.0%
! TCTATGGTGGTGTTTATAGG+AGG + Chr1:93400530-93400549 None:intergenic 40.0%
!! GCATAGAAGCCATGTTTTTG+GGG + Chr1:93401458-93401477 None:intergenic 40.0%
!! TTGATTCCTGAGTTTTGTGC+AGG - Chr1:93402641-93402660 MsG0180005563.01.T01:intron 40.0%
AGAAACACCACAAGCACCAA+TGG - Chr1:93400430-93400449 MsG0180005563.01.T01:three_prime_UTR 45.0%
AGAGTATGATGTGTGGACTC+AGG - Chr1:93403283-93403302 MsG0180005563.01.T01:intron 45.0%
AGATCACCTGCACAAAACTC+AGG + Chr1:93402650-93402669 None:intergenic 45.0%
AGCAGATCTAACATTCACGG+CGG + Chr1:93401853-93401872 None:intergenic 45.0%
AGTGGTTTCAGAGGAAGCAA+AGG + Chr1:93400612-93400631 None:intergenic 45.0%
AGTTCCCATAGTAGCTTCAG+CGG - Chr1:93402176-93402195 MsG0180005563.01.T01:CDS 45.0%
ATGCATTCTTCCCTGCAGTA+CGG - Chr1:93401474-93401493 MsG0180005563.01.T01:intron 45.0%
CTGTGTCTCCAAGAACTTCA+GGG - Chr1:93400792-93400811 MsG0180005563.01.T01:CDS 45.0%
CTTCAGAAGTTCACAACCTC+TGG + Chr1:93402258-93402277 None:intergenic 45.0%
GAACGTGAGAGAAACTCCAT+TGG + Chr1:93400449-93400468 None:intergenic 45.0%
GAGTATGATGTGTGGACTCA+GGG - Chr1:93403284-93403303 MsG0180005563.01.T01:intron 45.0%
GATTCCTGTGGAGAGAAGTT+TGG - Chr1:93402127-93402146 MsG0180005563.01.T01:intron 45.0%
GCCCCTCACAAATCCTTAAA+TGG + Chr1:93403073-93403092 None:intergenic 45.0%
GGAACATGGAAGAGTGAAGT+GGG + Chr1:93400403-93400422 None:intergenic 45.0%
GGAGAAAGCGAATAGTGACT+CGG - Chr1:93401731-93401750 MsG0180005563.01.T01:intron 45.0%
GGGAGAAATTTAGGCAATGG+GGG - Chr1:93403378-93403397 MsG0180005563.01.T01:intron 45.0%
GGGGAGAAATTTAGGCAATG+GGG - Chr1:93403377-93403396 MsG0180005563.01.T01:intron 45.0%
GGGGGAGAAATTTAGGCAAT+GGG - Chr1:93403376-93403395 MsG0180005563.01.T01:intron 45.0%
GGTGGTGTTTATAGGAGGTT+TGG + Chr1:93400525-93400544 None:intergenic 45.0%
GGTTTCTTCTTCGGTTTCTC+CGG + Chr1:93400564-93400583 None:intergenic 45.0%
TATTGCAGCAGTGATTCCTG+TGG - Chr1:93402115-93402134 MsG0180005563.01.T01:intron 45.0%
TCTGTGTCTCCAAGAACTTC+AGG - Chr1:93400791-93400810 MsG0180005563.01.T01:CDS 45.0%
TCTGTTAGATTGTAGGGACC+AGG + Chr1:93401153-93401172 None:intergenic 45.0%
TGGAGTTTCTCTCACGTTCA+TGG - Chr1:93400450-93400469 MsG0180005563.01.T01:three_prime_UTR 45.0%
TGGGTTTAAGGAAACAGAGG+AGG + Chr1:93400585-93400604 None:intergenic 45.0%
TGTGAGGGGCAAGATCAAAA+GGG - Chr1:93403083-93403102 MsG0180005563.01.T01:intron 45.0%
TTCCTGTGGAGAGAAGTTTG+GGG - Chr1:93402129-93402148 MsG0180005563.01.T01:intron 45.0%
TTGTGAGGGGCAAGATCAAA+AGG - Chr1:93403082-93403101 MsG0180005563.01.T01:intron 45.0%
TTTGTGCAGGTGATCTTCAC+TGG - Chr1:93402654-93402673 MsG0180005563.01.T01:intron 45.0%
! AAATTATGGGCTTTGGCTCC+TGG - Chr1:93403824-93403843 MsG0180005563.01.T01:five_prime_UTR 45.0%
! AAGGCAAAAGGTATGCCAGT+TGG - Chr1:93403499-93403518 MsG0180005563.01.T01:CDS 45.0%
! AATTATGGGCTTTGGCTCCT+GGG - Chr1:93403825-93403844 MsG0180005563.01.T01:five_prime_UTR 45.0%
! AGAAACTCCATTGGTGCTTG+TGG + Chr1:93400440-93400459 None:intergenic 45.0%
! AGGCAAAAGGTATGCCAGTT+GGG - Chr1:93403500-93403519 MsG0180005563.01.T01:CDS 45.0%
! ATTGGTGCTTGTGGTGTTTC+TGG + Chr1:93400431-93400450 None:intergenic 45.0%
! GATTTTGAGCTCCTGTTCTG+AGG - Chr1:93403354-93403373 MsG0180005563.01.T01:intron 45.0%
! GGGGCACCTTTAGTATGATA+AGG - Chr1:93402855-93402874 MsG0180005563.01.T01:intron 45.0%
! GTGTTGTTGTAGCTTTGCGT+GGG - Chr1:93402051-93402070 MsG0180005563.01.T01:intron 45.0%
! TGTGTTGTTGTAGCTTTGCG+TGG - Chr1:93402050-93402069 MsG0180005563.01.T01:intron 45.0%
! TGTTGTTGTAGCTTTGCGTG+GGG - Chr1:93402052-93402071 MsG0180005563.01.T01:intron 45.0%
! TTCTGAGGGGGGAGAAATTT+AGG - Chr1:93403369-93403388 MsG0180005563.01.T01:intron 45.0%
!! ATTGAAAGCGAGGGCATTGA+AGG - Chr1:93402082-93402101 MsG0180005563.01.T01:intron 45.0%
!! GCTTCTGGTGGTAATGGTAA+TGG - Chr1:93402152-93402171 MsG0180005563.01.T01:intron 45.0%
!! GGTGGGTCTTGTTCCATTTA+AGG - Chr1:93403057-93403076 MsG0180005563.01.T01:intron 45.0%
!! TTTTGAGCTCCTGTTCTGAG+GGG - Chr1:93403356-93403375 MsG0180005563.01.T01:intron 45.0%
!! ATTAATACAATATAAAATTA+TGG - Chr1:93403810-93403829 MsG0180005563.01.T01:five_prime_UTR 5.0%
!! TTAATACAATATAAAATTAT+GGG - Chr1:93403811-93403830 MsG0180005563.01.T01:five_prime_UTR 5.0%
AATTTCTCCCCCCTCAGAAC+AGG + Chr1:93403368-93403387 None:intergenic 50.0%
AGATACCGCAGCATGAACCT+GGG + Chr1:93401637-93401656 None:intergenic 50.0%
ATCCATGAGAGAGAGCGAGT+GGG + Chr1:93400351-93400370 None:intergenic 50.0%
ATGAAGAGTAGGCACGTTGC+TGG - Chr1:93402949-93402968 MsG0180005563.01.T01:intron 50.0%
ATGGAAGAGTGAAGTGGGTC+GGG + Chr1:93400398-93400417 None:intergenic 50.0%
CATGGAAGAGTGAAGTGGGT+CGG + Chr1:93400399-93400418 None:intergenic 50.0%
CGGAACATGGAAGAGTGAAG+TGG + Chr1:93400404-93400423 None:intergenic 50.0%
CTCACCGCTGAAGCTACTAT+GGG + Chr1:93402183-93402202 None:intergenic 50.0%
GACGGTTGGAAGATGGCTTA+AGG - Chr1:93401569-93401588 MsG0180005563.01.T01:intron 50.0%
GAGAGTCTCCCTGAAGTTCT+TGG + Chr1:93400803-93400822 None:intergenic 50.0%
GCCGTGAATGTTAGATCTGC+TGG - Chr1:93401852-93401871 MsG0180005563.01.T01:CDS 50.0%
GCTGTTCTTCTCAGCTGCAA+TGG + Chr1:93403327-93403346 None:intergenic 50.0%
GGCTGCAACATTGAAAGCGA+GGG - Chr1:93402073-93402092 MsG0180005563.01.T01:intron 50.0%
GGGGGACATACAAGGATCTA+TGG - Chr1:93403396-93403415 MsG0180005563.01.T01:intron 50.0%
GGGGGGAGAAATTTAGGCAA+TGG - Chr1:93403375-93403394 MsG0180005563.01.T01:intron 50.0%
GGTGAGAATCGTCGCTACTT+TGG - Chr1:93403209-93403228 MsG0180005563.01.T01:CDS 50.0%
GTGGTAAGACGGTTGGAAGA+TGG - Chr1:93401562-93401581 MsG0180005563.01.T01:intron 50.0%
TAGGCAATGGGGGACATACA+AGG - Chr1:93403388-93403407 MsG0180005563.01.T01:intron 50.0%
TATCCATGAGAGAGAGCGAG+TGG + Chr1:93400352-93400371 None:intergenic 50.0%
TCAGTGTGTTGAGACTGCAG+AGG - Chr1:93401785-93401804 MsG0180005563.01.T01:intron 50.0%
TCCTGTGGAGAGAAGTTTGG+GGG - Chr1:93402130-93402149 MsG0180005563.01.T01:intron 50.0%
TCTCAGCTGCAATGGAAAGC+AGG + Chr1:93403319-93403338 None:intergenic 50.0%
TGAAGAGTAGGCACGTTGCT+GGG - Chr1:93402950-93402969 MsG0180005563.01.T01:intron 50.0%
TGATCAAAGATATGCCCGCG+TGG - Chr1:93403162-93403181 MsG0180005563.01.T01:intron 50.0%
TGCAGCAATTGCAGCTACTG+CGG + Chr1:93401676-93401695 None:intergenic 50.0%
TTAACTGCTGCTGCTGCAAC+AGG - Chr1:93401888-93401907 MsG0180005563.01.T01:CDS 50.0%
! AGCATGAACCTGGGCATTGT+GGG + Chr1:93401628-93401647 None:intergenic 50.0%
! AGCGAATAGTGACTCGGCTT+TGG - Chr1:93401737-93401756 MsG0180005563.01.T01:intron 50.0%
! GGCAAAAGGTATGCCAGTTG+GGG - Chr1:93403501-93403520 MsG0180005563.01.T01:CDS 50.0%
! TTACACCGCCGTTGTTTCCA+CGG + Chr1:93401500-93401519 None:intergenic 50.0%
! TTTGGCTTCTGCAGCAACGT+TGG - Chr1:93401755-93401774 MsG0180005563.01.T01:intron 50.0%
! TTTTCCAGACCCAGACGAAG+CGG + Chr1:93401706-93401725 None:intergenic 50.0%
!! CGAGGGCATTGAAGGAAGTT+TGG - Chr1:93402090-93402109 MsG0180005563.01.T01:intron 50.0%
!! CTTGTGGTGTTTCTGGTGGA+CGG + Chr1:93400424-93400443 None:intergenic 50.0%
!! TGTTTCTGGTGGACGGAACA+TGG + Chr1:93400417-93400436 None:intergenic 50.0%
!! TTTGAGCTCCTGTTCTGAGG+GGG - Chr1:93403357-93403376 MsG0180005563.01.T01:intron 50.0%
AAAGATATGCCCGCGTGGAC+GGG - Chr1:93403167-93403186 MsG0180005563.01.T01:intron 55.0%
AGAAGTTTGGGGGCTTCTGG+TGG - Chr1:93402140-93402159 MsG0180005563.01.T01:intron 55.0%
AGCAATTGCAGCTACTGCGG+CGG + Chr1:93401673-93401692 None:intergenic 55.0%
CAAAGATATGCCCGCGTGGA+CGG - Chr1:93403166-93403185 MsG0180005563.01.T01:intron 55.0%
CAATGCCCAGGTTCATGCTG+CGG - Chr1:93401629-93401648 MsG0180005563.01.T01:intron 55.0%
CAGATACCGCAGCATGAACC+TGG + Chr1:93401638-93401657 None:intergenic 55.0%
CAGTACGGCCGTGGAAACAA+CGG - Chr1:93401489-93401508 MsG0180005563.01.T01:intron 55.0%
GAGAGAAGTTTGGGGGCTTC+TGG - Chr1:93402137-93402156 MsG0180005563.01.T01:intron 55.0%
GCTCACCGCTGAAGCTACTA+TGG + Chr1:93402184-93402203 None:intergenic 55.0%
GGGAGACTCTCACACAGTAG+TGG - Chr1:93400812-93400831 MsG0180005563.01.T01:CDS 55.0%
GGGCTGCAACATTGAAAGCG+AGG - Chr1:93402072-93402091 MsG0180005563.01.T01:intron 55.0%
GGTTCATGCTGCGGTATCTG+TGG - Chr1:93401638-93401657 MsG0180005563.01.T01:intron 55.0%
GTCTGGGTCTGGAAAAGACG+AGG - Chr1:93401710-93401729 MsG0180005563.01.T01:intron 55.0%
TCTCACCGCCTTCCAGCAAA+TGG + Chr1:93403196-93403215 None:intergenic 55.0%
TGGGTCGGGTCTCCAGAAAT+GGG + Chr1:93400384-93400403 None:intergenic 55.0%
TTGGGGGCTTCTGGTGGTAA+TGG - Chr1:93402146-93402165 MsG0180005563.01.T01:intron 55.0%
! CAGCATGAACCTGGGCATTG+TGG + Chr1:93401629-93401648 None:intergenic 55.0%
! TGTTGAGACTGCAGAGGCGT+TGG - Chr1:93401791-93401810 MsG0180005563.01.T01:CDS 55.0%
! TTCTGCAGCAACGTTGGTGG+CGG - Chr1:93401761-93401780 MsG0180005563.01.T01:intron 55.0%
!! CTTCTGAAGCGCACACGCAA+AGG - Chr1:93402269-93402288 MsG0180005563.01.T01:CDS 55.0%
!! GGTGCTTGTGGTGTTTCTGG+TGG + Chr1:93400428-93400447 None:intergenic 55.0%
!! GTTGAGACTGCAGAGGCGTT+GGG - Chr1:93401792-93401811 MsG0180005563.01.T01:CDS 55.0%
!! TGGTGGTGGTGGTGGTAAGA+CGG - Chr1:93401551-93401570 MsG0180005563.01.T01:intron 55.0%
!! TTGAGACTGCAGAGGCGTTG+GGG - Chr1:93401793-93401812 MsG0180005563.01.T01:CDS 55.0%
!! TTGAGCTCCTGTTCTGAGGG+GGG - Chr1:93403358-93403377 MsG0180005563.01.T01:intron 55.0%
CACCCACTCGCTCTCTCTCA+TGG - Chr1:93400346-93400365 MsG0180005563.01.T01:three_prime_UTR 60.0%
CGGAGTTAACCACCGCAGCA+AGG + Chr1:93401833-93401852 None:intergenic 60.0%
GCCCCCAAACTTCTCTCCAC+AGG + Chr1:93402134-93402153 None:intergenic 60.0%
GGAACGGGAACACCTTGCTG+CGG - Chr1:93401818-93401837 MsG0180005563.01.T01:CDS 60.0%
GGCTTCTGCAGCAACGTTGG+TGG - Chr1:93401758-93401777 MsG0180005563.01.T01:intron 60.0%
GTCTTACCACCACCACCACC+AGG + Chr1:93401552-93401571 None:intergenic 60.0%
GTGGGTCGGGTCTCCAGAAA+TGG + Chr1:93400385-93400404 None:intergenic 60.0%
GTTTCCACGGCCGTACTGCA+GGG + Chr1:93401487-93401506 None:intergenic 60.0%
TACGGCCGTGGAAACAACGG+CGG - Chr1:93401492-93401511 MsG0180005563.01.T01:intron 60.0%
TATCTGGGTGGCAGACCACC+TGG - Chr1:93401531-93401550 MsG0180005563.01.T01:intron 60.0%
TGTTTCCACGGCCGTACTGC+AGG + Chr1:93401488-93401507 None:intergenic 60.0%
TTACCACCACCACCACCAGG+TGG + Chr1:93401549-93401568 None:intergenic 60.0%
! ACGGGACGCCATTTGCTGGA+AGG - Chr1:93403185-93403204 MsG0180005563.01.T01:intron 60.0%
! ATGGGCTTTGGCTCCTGGGT+TGG - Chr1:93403829-93403848 MsG0180005563.01.T01:five_prime_UTR 60.0%
! GGACGCCATTTGCTGGAAGG+CGG - Chr1:93403188-93403207 MsG0180005563.01.T01:intron 60.0%
!! GGTGGTGGTGGTAAGACGGT+TGG - Chr1:93401555-93401574 MsG0180005563.01.T01:intron 60.0%
!! TGAGACTGCAGAGGCGTTGG+GGG - Chr1:93401794-93401813 MsG0180005563.01.T01:CDS 60.0%
AAATGGCGTCCCGTCCACGC+GGG + Chr1:93403179-93403198 None:intergenic 65.0%
ACGGGAACACCTTGCTGCGG+TGG - Chr1:93401821-93401840 MsG0180005563.01.T01:CDS 65.0%
AGCAAGGGCCCACAATGCCC+AGG - Chr1:93401617-93401636 MsG0180005563.01.T01:intron 65.0%
CAAATGGCGTCCCGTCCACG+CGG + Chr1:93403180-93403199 None:intergenic 65.0%
GTGGACGGGACGCCATTTGC+TGG - Chr1:93403181-93403200 MsG0180005563.01.T01:intron 65.0%
TCCAGACCCAGACGAAGCGG+CGG + Chr1:93401703-93401722 None:intergenic 65.0%
TCTTCCCTGCAGTACGGCCG+TGG - Chr1:93401480-93401499 MsG0180005563.01.T01:intron 65.0%
!! AGACCACCTGGTGGTGGTGG+TGG - Chr1:93401543-93401562 MsG0180005563.01.T01:intron 65.0%
ACCGCCGCTTCGTCTGGGTC+TGG - Chr1:93401699-93401718 MsG0180005563.01.T01:intron 70.0%
AGACCCAGACGAAGCGGCGG+TGG + Chr1:93401700-93401719 None:intergenic 70.0%
CAGCCACCGCCGCTTCGTCT+GGG - Chr1:93401694-93401713 MsG0180005563.01.T01:intron 70.0%
CTGGGTGGCAGACCACCTGG+TGG - Chr1:93401534-93401553 MsG0180005563.01.T01:intron 70.0%
GGTGGCAGACCACCTGGTGG+TGG - Chr1:93401537-93401556 MsG0180005563.01.T01:intron 70.0%
!! AGAGGCGTTGGGGGCGGAAC+GGG - Chr1:93401803-93401822 MsG0180005563.01.T01:CDS 70.0%
!! CAGAGGCGTTGGGGGCGGAA+CGG - Chr1:93401802-93401821 MsG0180005563.01.T01:CDS 70.0%
!! GACTGCAGAGGCGTTGGGGG+CGG - Chr1:93401797-93401816 MsG0180005563.01.T01:CDS 70.0%
!! GGCAGACCACCTGGTGGTGG+TGG - Chr1:93401540-93401559 MsG0180005563.01.T01:intron 70.0%
GCAGCCACCGCCGCTTCGTC+TGG - Chr1:93401693-93401712 MsG0180005563.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93400224 93403856 93400224 ID=MsG0180005563.01;Name=MsG0180005563.01
Chr1 mRNA 93400224 93403856 93400224 ID=MsG0180005563.01.T01;Parent=MsG0180005563.01;Name=MsG0180005563.01.T01;_AED=0.26;_eAED=0.26;_QI=141|0.75|1|1|1|1|5|495|421
Chr1 exon 93400224 93400933 93400224 ID=MsG0180005563.01.T01:exon:16104;Parent=MsG0180005563.01.T01
Chr1 exon 93401790 93402017 93401790 ID=MsG0180005563.01.T01:exon:16103;Parent=MsG0180005563.01.T01
Chr1 exon 93402171 93402588 93402171 ID=MsG0180005563.01.T01:exon:16102;Parent=MsG0180005563.01.T01
Chr1 exon 93403194 93403298 93403194 ID=MsG0180005563.01.T01:exon:16101;Parent=MsG0180005563.01.T01
Chr1 exon 93403416 93403856 93403416 ID=MsG0180005563.01.T01:exon:16100;Parent=MsG0180005563.01.T01
Chr1 five_prime_UTR 93403716 93403856 93403716 ID=MsG0180005563.01.T01:five_prime_utr;Parent=MsG0180005563.01.T01
Chr1 CDS 93403416 93403715 93403416 ID=MsG0180005563.01.T01:cds;Parent=MsG0180005563.01.T01
Chr1 CDS 93403194 93403298 93403194 ID=MsG0180005563.01.T01:cds;Parent=MsG0180005563.01.T01
Chr1 CDS 93402171 93402588 93402171 ID=MsG0180005563.01.T01:cds;Parent=MsG0180005563.01.T01
Chr1 CDS 93401790 93402017 93401790 ID=MsG0180005563.01.T01:cds;Parent=MsG0180005563.01.T01
Chr1 CDS 93400719 93400933 93400719 ID=MsG0180005563.01.T01:cds;Parent=MsG0180005563.01.T01
Chr1 three_prime_UTR 93400224 93400718 93400224 ID=MsG0180005563.01.T01:three_prime_utr;Parent=MsG0180005563.01.T01
Gene Sequence

>MsG0180005563.01.T01

ATGGATAAAGCTCAAACCCATTTCTGGAGACCCGACCCACTTCACTCTTCCATGTTCCGTCCACCAGAAACACCACAAGCACCAATGGAGTTTCTCTCACGTTCATGGAGTGTATCAGCTCTTGAAATCTCCAAAACTCTCTCCTCTTCTTCTTCTTCCAAACCTCCTATAAACACCACCATAGAAGAAAACATCACCGGAGAAACCGAAGAAGAAACCTCCTCTGTTTCCTTAAACCCATTTTCCTTTGCTTCCTCTGAAACCACTCAAATGATAATGGAACGCATCATGTCACAAACCGAGGATGTTTCTGTGTCTCCAAGAACTTCAGGGAGACTCTCACACAGTAGTGGTCCTTTAACAGATAGTTGTCCTGTTTCACCATCTGAAATCGACGATATCAAGTACGGCCGTGGAAACAACGGCGGTGTAAGCTTAAATAGTTATCTGGGTGGCAGACCACCTGGTGGTGGTGGTGGTAAGACGGTTGGAAGATGGCTTAAGGATAGAAAGGAGAAGAAAAAGGAAGAAGCAAGGGCCCACAATGCCCAGGTTCATGCTGCGGTATCTGTGGCTGCTGTTGCCGCCGCAGTAGCTGCAATTGCTGCAGCCACCGCCGCTTCGTCTGGGTCTGGAAAAGACGAGGAGAAAGCGAATAGTGACTCGGCTTTGGCTTCTGCAGCAACGTTGGTGGCGGCTCAGTGTGTTGAGACTGCAGAGGCGTTGGGGGCGGAACGGGAACACCTTGCTGCGGTGGTTAACTCCGCCGTGAATGTTAGATCTGCTGGTGATATTATGACTTTAACTGCTGCTGCTGCAACAGCTTTGCGTGGGGCTGCAACATTGAAAGCGAGGGCATTGAAGGAAGTTTGGAATATTGCAGCAGTGATTCCTGTGGAGAGAAGTTTGGGGGCTTCTGGTGGTAATGGTAATGGAAGTTCCCATAGTAGCTTCAGCGGTGAGCTTGTACCTGAAGATAATTTCTCGGGTACTATCTATAGTAGAGAATTACTTGCCAGAGGTTGTGAACTTCTGAAGCGCACACGCAAAGATGTCGTGATTGAATTGATCAAAGATATGCCCGCGTGGACGGGACGCCATTTGCTGGAAGGCGGTGAGAATCGTCGCTACTTTGGATTGAAAACATTATTGCGTGGTGTCGTTGAATTTGAGTGCATGAATCAAAGAGAGTATGATGTGTGGACTCAGGGTGTCTCTAGCCTGCTTTCCATTGCAGCTGAGAAGAACAGCAGAAATAGATTTTGA
Protein sequence

>MsG0180005563.01.T01

MDKAQTHFWRPDPLHSSMFRPPETPQAPMEFLSRSWSVSALEISKTLSSSSSSKPPINTTIEENITGETEEETSSVSLNPFSFASSETTQMIMERIMSQTEDVSVSPRTSGRLSHSSGPLTDSCPVSPSEIDDIKYGRGNNGGVSLNSYLGGRPPGGGGGKTVGRWLKDRKEKKKEEARAHNAQVHAAVSVAAVAAAVAAIAAATAASSGSGKDEEKANSDSALASAATLVAAQCVETAEALGAEREHLAAVVNSAVNVRSAGDIMTLTAAAATALRGAATLKARALKEVWNIAAVIPVERSLGASGGNGNGSSHSSFSGELVPEDNFSGTIYSRELLARGCELLKRTRKDVVIELIKDMPAWTGRHLLEGGENRRYFGLKTLLRGVVEFECMNQREYDVWTQGVSSLLSIAAEKNSRNRF*