AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040644.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040644.01.T01 MTR_7g094980 95.105 286 7 3 1 282 1 283 0.0 517
MsG0780040644.01.T01 MTR_1g015700 36.652 221 126 2 73 282 185 402 2.11e-36 134
MsG0780040644.01.T01 MTR_1g015700 36.667 120 62 2 73 181 185 301 9.53e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040644.01.T01 AT3G63170 55.396 278 120 2 1 278 1 274 5.99e-102 299
MsG0780040644.01.T01 AT2G26310 37.755 196 116 1 83 272 192 387 1.67e-34 129
MsG0780040644.01.T01 AT2G26310 37.755 196 116 1 83 272 192 387 1.67e-34 129
MsG0780040644.01.T01 AT2G26310 37.143 175 104 1 83 251 192 366 7.92e-27 107
MsG0780040644.01.T01 AT2G26310 33.673 196 99 2 83 272 192 362 8.90e-26 105
MsG0780040644.01.T01 AT2G26310 36.709 158 93 2 83 233 192 349 6.37e-22 94.4

Find 83 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAGGATTGAGGTGGTTT+TGG 0.135229 7:+80533737 None:intergenic
GTTAAGAACGAAAAGAATTT+TGG 0.155565 7:-80533459 MsG0780040644.01.T01:CDS
CAACAACTCCTTGCCTCTTT+GGG 0.168951 7:-80533585 MsG0780040644.01.T01:CDS
GGCTGCTGCAGCGGCGAATT+TGG 0.206859 7:+80533706 None:intergenic
AGATGTCTGTCTGAGAAATA+TGG 0.266325 7:-80533151 MsG0780040644.01.T01:CDS
AACATTGATGTATATGCTTT+TGG 0.274436 7:-80533428 MsG0780040644.01.T01:intron
GCAACAACTCCTTGCCTCTT+TGG 0.280639 7:-80533586 MsG0780040644.01.T01:CDS
TCTCAGAAACTCTGTGGAAT+TGG 0.281241 7:-80533482 MsG0780040644.01.T01:CDS
AATGAGATATGAATAAATTC+AGG 0.340733 7:+80531120 None:intergenic
GCTGCAGCAGCCGCCACTGC+TGG 0.344961 7:-80533695 MsG0780040644.01.T01:CDS
TCTTTAGCTTGTTTATCAAA+TGG 0.380206 7:+80531331 None:intergenic
CTCCTTGTTTCCCTTCAATT+CGG 0.388808 7:+80533114 None:intergenic
CCTCGCCAACGTATAAATCT+AGG 0.389464 7:+80531356 None:intergenic
AGCACAAGGGATGCATCAAC+AGG 0.396096 7:+80531165 None:intergenic
AAAGAGACGGTGGCGGTCAT+TGG 0.410130 7:+80533643 None:intergenic
CTCAGAAACTCTGTGGAATT+GGG 0.422840 7:-80533481 MsG0780040644.01.T01:CDS
CCTATTGTTGACTCGAGAAC+CGG 0.423269 7:-80533533 MsG0780040644.01.T01:CDS
ACGGAAGTTACGAAGTGTTT+CGG 0.427586 7:+80533803 None:intergenic
GGAGTTTAATGAGGATCTAC+TGG 0.431474 7:-80533095 MsG0780040644.01.T01:CDS
ACCTACACAGGAGTTTACTT+TGG 0.433749 7:+80531383 None:intergenic
TCTTTGGGGTTCTCTCAGTC+TGG 0.434966 7:-80533570 MsG0780040644.01.T01:CDS
ATGATATACATTTAACAGTA+AGG 0.442640 7:-80533069 MsG0780040644.01.T01:CDS
TGCAGTTGACGGACAGGAAG+TGG 0.444813 7:-80531413 MsG0780040644.01.T01:intron
CCGGTTCTCGAGTCAACAAT+AGG 0.456771 7:+80533533 None:intergenic
AAGAGGCAAGGAGTTGTTGC+TGG 0.461051 7:+80533589 None:intergenic
AACAGAAGGGAACGAGGATC+CGG 0.468367 7:+80533514 None:intergenic
GTTACGAAGTGTTTCGGAGT+TGG 0.469859 7:+80533809 None:intergenic
AGCAGTGGCGGCTGCTGCAG+CGG 0.471585 7:+80533697 None:intergenic
GAGAAAGGGCGTGAGGATTG+AGG 0.476918 7:+80533728 None:intergenic
GCAGCGGCGAATTTGGAGAA+AGG 0.483136 7:+80533713 None:intergenic
AACAACTCCTTGCCTCTTTG+GGG 0.492409 7:-80533584 MsG0780040644.01.T01:CDS
GATGTCTGTCTGAGAAATAT+GGG 0.494327 7:-80533150 MsG0780040644.01.T01:CDS
AACTTTGGAGGTAAGAAGCC+AGG 0.495322 7:+80531293 None:intergenic
TCTCTCAGTCTGGCTGATAG+TGG 0.497372 7:-80533560 MsG0780040644.01.T01:CDS
TGCGGCGGTGGCACCAGCAG+TGG 0.498989 7:+80533682 None:intergenic
GGTTGTTGCAGTTGACGGAC+AGG 0.501877 7:-80531419 MsG0780040644.01.T01:intron
CGGAGTTGGAACATGGAGAC+TGG 0.504539 7:+80533823 None:intergenic
TTTGGGTTAGAAAATGTGAA+AGG 0.508855 7:+80533755 None:intergenic
GACGGCGATGAATGCGGCGG+TGG 0.511495 7:+80533670 None:intergenic
GGCGGTGGCACCAGCAGTGG+CGG 0.517725 7:+80533685 None:intergenic
GAGACGGTGGCGGTCATTGG+AGG 0.519519 7:+80533646 None:intergenic
GGAAGTGAAGAAAGAGTTCA+AGG 0.519936 7:+80533610 None:intergenic
CAGCGGCGAATTTGGAGAAA+GGG 0.523567 7:+80533714 None:intergenic
TGAGATGCTTCAAGAACAGA+AGG 0.526047 7:+80533500 None:intergenic
ATGAGATATGAATAAATTCA+GGG 0.526922 7:+80531121 None:intergenic
TTGTTTCCCTTCAATTCGGA+CGG 0.540407 7:+80533118 None:intergenic
AGTGCATTTGAAGAGTCTGT+TGG 0.545083 7:-80533004 MsG0780040644.01.T01:CDS
AGTGTTTCGGAGTTGGAACA+TGG 0.547591 7:+80533816 None:intergenic
GTCCGAATTGAAGGGAAACA+AGG 0.569239 7:-80533116 MsG0780040644.01.T01:CDS
TTGGGTTAGAAAATGTGAAA+GGG 0.569537 7:+80533756 None:intergenic
TCAATCCTAGATTTATACGT+TGG 0.577790 7:-80531361 MsG0780040644.01.T01:CDS
ATAATAAAGAATTGCTTCAG+AGG 0.585265 7:-80532952 MsG0780040644.01.T01:intron
GGGAAACAAGGAGTTTAATG+AGG 0.593911 7:-80533104 MsG0780040644.01.T01:CDS
CTAGAGGCATGGAATTAGCA+AGG 0.595016 7:+80531230 None:intergenic
AATTCATCTCACAAGAGAGA+AGG 0.595124 7:-80532495 MsG0780040644.01.T01:CDS
ATTCATCTCACAAGAGAGAA+GGG 0.595545 7:-80532494 MsG0780040644.01.T01:CDS
GAACAAAGTTACTAGAGGCA+TGG 0.595989 7:+80531219 None:intergenic
AATCTAGGATTGACCTACAC+AGG 0.602235 7:+80531371 None:intergenic
GCAGTTGACGGACAGGAAGT+GGG 0.604670 7:-80531412 MsG0780040644.01.T01:intron
GAGAGAACCCCAAAGAGGCA+AGG 0.606859 7:+80533577 None:intergenic
GGAGGAGACGGCGATGAATG+CGG 0.608626 7:+80533664 None:intergenic
GTGGCGGTCATTGGAGGAGA+CGG 0.609813 7:+80533652 None:intergenic
TTTGTAGAAAGAGACGGTGG+CGG 0.615662 7:+80533636 None:intergenic
CCTAGATTTATACGTTGGCG+AGG 0.617834 7:-80531356 MsG0780040644.01.T01:CDS
TTCTTGTCTCTTGAAGCACA+AGG 0.619784 7:+80531151 None:intergenic
ATTGAATCCATGTCCTACAA+AGG 0.620352 7:+80531253 None:intergenic
ATGAAATCAAAATACCTCGT+GGG 0.630447 7:-80532523 MsG0780040644.01.T01:CDS
AAAGGGCGTGAGGATTGAGG+TGG 0.632521 7:+80533731 None:intergenic
TACTTGTTGTGCGAAGAACA+TGG 0.634201 7:+80532471 None:intergenic
TCTTGTCTCTTGAAGCACAA+GGG 0.643717 7:+80531152 None:intergenic
GAATTTGGAGAAAGGGCGTG+AGG 0.655933 7:+80533721 None:intergenic
TTCAAGAACAGAAGGGAACG+AGG 0.656237 7:+80533508 None:intergenic
AGACTGAGAGAACCCCAAAG+AGG 0.657269 7:+80533572 None:intergenic
GATGAAATCAAAATACCTCG+TGG 0.663911 7:-80532524 MsG0780040644.01.T01:CDS
TCCAAAGTAAACTCCTGTGT+AGG 0.666013 7:-80531384 MsG0780040644.01.T01:CDS
AGAAGAAATAGAGCTCAACC+TGG 0.668098 7:-80531311 MsG0780040644.01.T01:CDS
GAAGCATCTCAGAAACTCTG+TGG 0.672841 7:-80533488 MsG0780040644.01.T01:CDS
GATTGAGCATTCGTTCTGTG+AGG 0.683191 7:-80533027 MsG0780040644.01.T01:CDS
GCACAAGGGATGCATCAACA+GGG 0.683819 7:+80531166 None:intergenic
GGAGACGGCGATGAATGCGG+CGG 0.700801 7:+80533667 None:intergenic
ATATTGAACAAAGTTACTAG+AGG 0.703138 7:+80531214 None:intergenic
GAGATGCTTCAAGAACAGAA+GGG 0.737233 7:+80533501 None:intergenic
AGATGAATTACAGACCCACG+AGG 0.819642 7:+80532509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATGAAATATTATTG+TGG + Chr7:80532765-80532784 None:intergenic 10.0%
!! GTAAAATAATTAGATAAAAA+AGG + Chr7:80531555-80531574 None:intergenic 10.0%
!! TATAAATGAAATATTATTGT+GGG + Chr7:80532764-80532783 None:intergenic 10.0%
!!! TTTTATAATGTTTCTTATTT+GGG - Chr7:80531700-80531719 MsG0780040644.01.T01:intron 10.0%
!!! TTTTTATAATGTTTCTTATT+TGG - Chr7:80531699-80531718 MsG0780040644.01.T01:intron 10.0%
!! ATTAGATAAAAAAGGTAAAT+TGG + Chr7:80531547-80531566 None:intergenic 15.0%
!! GGTTCTTAAAAAAAAAAAAA+AGG + Chr7:80533083-80533102 None:intergenic 15.0%
!! TCTTAAAAAAAAAAAAAAGG+AGG + Chr7:80533080-80533099 None:intergenic 15.0%
!!! ATTTTAGTAATGTTGAAATA+TGG - Chr7:80532998-80533017 MsG0780040644.01.T01:CDS 15.0%
!!! TTTTAGTAATGTTGAAATAT+GGG - Chr7:80532999-80533018 MsG0780040644.01.T01:CDS 15.0%
!! AAAAAAAAAAAAAGGAGGTA+AGG + Chr7:80533075-80533094 None:intergenic 20.0%
!! AATGAGATATGAATAAATTC+AGG + Chr7:80533808-80533827 None:intergenic 20.0%
!! ATGAGATATGAATAAATTCA+GGG + Chr7:80533807-80533826 None:intergenic 20.0%
!! ATGATATACATTTAACAGTA+AGG - Chr7:80531856-80531875 MsG0780040644.01.T01:intron 20.0%
!! ATTGGTAAAATAATTAGTTG+AGG + Chr7:80531529-80531548 None:intergenic 20.0%
!! TTACAGTAAAAAAAAAGTAG+CGG + Chr7:80532938-80532957 None:intergenic 20.0%
!!! AAAATTATGTTGTTTGTTGA+AGG - Chr7:80531723-80531742 MsG0780040644.01.T01:intron 20.0%
!!! CTTGCTTTTTTTTTTTTTTG+TGG + Chr7:80533207-80533226 None:intergenic 20.0%
!!! TTAAGAACGAAAAGAATTTT+GGG - Chr7:80531467-80531486 MsG0780040644.01.T01:intron 20.0%
! AAACCTGACAATTTGATTAT+TGG - Chr7:80532956-80532975 MsG0780040644.01.T01:CDS 25.0%
! ACCCATTTCCTTAAAATAAT+GGG + Chr7:80532792-80532811 None:intergenic 25.0%
! ATAATAAAGAATTGCTTCAG+AGG - Chr7:80531973-80531992 MsG0780040644.01.T01:intron 25.0%
! ATATTGAACAAAGTTACTAG+AGG + Chr7:80533714-80533733 None:intergenic 25.0%
! CGCTCATAAAAAAAAAGAAA+AGG + Chr7:80532170-80532189 None:intergenic 25.0%
! GAAGAAAAAGATACAAACAA+AGG + Chr7:80532138-80532157 None:intergenic 25.0%
! TATCCAATAATCAAATTGTC+AGG + Chr7:80532962-80532981 None:intergenic 25.0%
! TGCTAAAAAAAATCCTTTGT+AGG - Chr7:80533659-80533678 MsG0780040644.01.T01:CDS 25.0%
!! AACATTGATGTATATGCTTT+TGG - Chr7:80531497-80531516 MsG0780040644.01.T01:intron 25.0%
!! CTTTGATGTTAATTTTGTCT+TGG - Chr7:80533485-80533504 MsG0780040644.01.T01:CDS 25.0%
!! GTTAAGAACGAAAAGAATTT+TGG - Chr7:80531466-80531485 MsG0780040644.01.T01:intron 25.0%
!!! ACTTGAGTTATCTTTTTCAT+AGG - Chr7:80532012-80532031 MsG0780040644.01.T01:intron 25.0%
!!! ATATCTTCCCCATTATTTTA+AGG - Chr7:80532781-80532800 MsG0780040644.01.T01:intron 25.0%
!!! GCTTTTTTTTTTTTTTGTGG+TGG + Chr7:80533204-80533223 None:intergenic 25.0%
!!! TAGTGATACCATTTTTGTTA+CGG + Chr7:80531144-80531163 None:intergenic 25.0%
!!! TCTTTAGCTTGTTTATCAAA+TGG + Chr7:80533597-80533616 None:intergenic 25.0%
!!! TTTTGAAATCCAATGATTAG+AGG + Chr7:80532601-80532620 None:intergenic 25.0%
!!! TTTTTTTAGCAGTCTAACTT+TGG + Chr7:80533650-80533669 None:intergenic 25.0%
AAAAAATCCTTTGTAGGACA+TGG - Chr7:80533665-80533684 MsG0780040644.01.T01:CDS 30.0%
AAGATGGAAATGCAAATACA+GGG + Chr7:80532490-80532509 None:intergenic 30.0%
AATTCAAGTCCTCTAATCAT+TGG - Chr7:80532589-80532608 MsG0780040644.01.T01:intron 30.0%
AGCAGAAAAGATACAAACAA+AGG + Chr7:80532194-80532213 None:intergenic 30.0%
AGTTAAACTTTCAACTCAGT+TGG - Chr7:80533315-80533334 MsG0780040644.01.T01:intron 30.0%
ATGAAATCAAAATACCTCGT+GGG - Chr7:80532402-80532421 MsG0780040644.01.T01:intron 30.0%
CACCCATTTCCTTAAAATAA+TGG + Chr7:80532793-80532812 None:intergenic 30.0%
CCCATTTCCTTAAAATAATG+GGG + Chr7:80532791-80532810 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - Chr7:80533159-80533178 MsG0780040644.01.T01:CDS 30.0%
TAAGTATCAAGTACCTTACA+CGG - Chr7:80533251-80533270 MsG0780040644.01.T01:intron 30.0%
TAGCTAACTGAATGAATTTG+CGG - Chr7:80531607-80531626 MsG0780040644.01.T01:intron 30.0%
TCAATCCTAGATTTATACGT+TGG - Chr7:80533564-80533583 MsG0780040644.01.T01:CDS 30.0%
TCAATGCTAAATCACAACAA+GGG - Chr7:80533461-80533480 MsG0780040644.01.T01:CDS 30.0%
! AATTCTGAAAGTTGAGAAGA+TGG + Chr7:80532506-80532525 None:intergenic 30.0%
! ACTTGGAATACAGTTTTCAA+TGG + Chr7:80532270-80532289 None:intergenic 30.0%
! GGTAAGGTTTAAGTGTTATT+AGG + Chr7:80533059-80533078 None:intergenic 30.0%
! GGTTTAAGTGTTATTAGGTT+CGG + Chr7:80533054-80533073 None:intergenic 30.0%
! TATTTTACCAAGATTCTGCA+TGG - Chr7:80531567-80531586 MsG0780040644.01.T01:intron 30.0%
! TGAATTTTTCACAGTCAACA+TGG + Chr7:80531677-80531696 None:intergenic 30.0%
! TTGGGTTAGAAAATGTGAAA+GGG + Chr7:80531172-80531191 None:intergenic 30.0%
! TTTGGGTTAGAAAATGTGAA+AGG + Chr7:80531173-80531192 None:intergenic 30.0%
!!! CATTATTTTAAGGAAATGGG+TGG - Chr7:80532791-80532810 MsG0780040644.01.T01:intron 30.0%
!!! CCCCATTATTTTAAGGAAAT+GGG - Chr7:80532788-80532807 MsG0780040644.01.T01:intron 30.0%
!!! TCCCCATTATTTTAAGGAAA+TGG - Chr7:80532787-80532806 MsG0780040644.01.T01:intron 30.0%
!!! TTAGGTGTTTTAGTTGCTTT+TGG - Chr7:80533423-80533442 MsG0780040644.01.T01:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG + Chr7:80533199-80533218 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+TGG + Chr7:80533200-80533219 None:intergenic 30.0%
AACTAAAACACCTAATACCG+GGG + Chr7:80533418-80533437 None:intergenic 35.0%
AATTCATCTCACAAGAGAGA+AGG - Chr7:80532430-80532449 MsG0780040644.01.T01:intron 35.0%
AGATGTCTGTCTGAGAAATA+TGG - Chr7:80531774-80531793 MsG0780040644.01.T01:intron 35.0%
ATTCATCTCACAAGAGAGAA+GGG - Chr7:80532431-80532450 MsG0780040644.01.T01:intron 35.0%
ATTGAATCCATGTCCTACAA+AGG + Chr7:80533675-80533694 None:intergenic 35.0%
CAACTAAAACACCTAATACC+GGG + Chr7:80533419-80533438 None:intergenic 35.0%
CATAATATATGCAAGGTCTG+GGG - Chr7:80533166-80533185 MsG0780040644.01.T01:CDS 35.0%
CGTAACTTCCGTAACAAAAA+TGG - Chr7:80531133-80531152 MsG0780040644.01.T01:three_prime_UTR 35.0%
GAAGATGGAAATGCAAATAC+AGG + Chr7:80532491-80532510 None:intergenic 35.0%
GATGAAATCAAAATACCTCG+TGG - Chr7:80532401-80532420 MsG0780040644.01.T01:intron 35.0%
GATGTCTGTCTGAGAAATAT+GGG - Chr7:80531775-80531794 MsG0780040644.01.T01:intron 35.0%
GCAACTAAAACACCTAATAC+CGG + Chr7:80533420-80533439 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - Chr7:80533165-80533184 MsG0780040644.01.T01:CDS 35.0%
GTCAATGCTAAATCACAACA+AGG - Chr7:80533460-80533479 MsG0780040644.01.T01:CDS 35.0%
TAAGATTCATGTAGCCAGTT+TGG + Chr7:80532722-80532741 None:intergenic 35.0%
TCGTGAGATGAATAAACACT+TGG + Chr7:80532287-80532306 None:intergenic 35.0%
TGATATACCACATTCCAAAC+TGG - Chr7:80532705-80532724 MsG0780040644.01.T01:intron 35.0%
TGCATAATATATGCAAGGTC+TGG - Chr7:80533164-80533183 MsG0780040644.01.T01:CDS 35.0%
TGGTGATTTCAAATTCGAAC+TGG - Chr7:80533335-80533354 MsG0780040644.01.T01:intron 35.0%
! ACTTCAATAACATTTTCCCG+TGG + Chr7:80531057-80531076 None:intergenic 35.0%
! AGGCATTTTGTAGAAAGAGA+CGG + Chr7:80531298-80531317 None:intergenic 35.0%
! AGTATTGAGTCTAACCGAAA+GGG - Chr7:80532675-80532694 MsG0780040644.01.T01:intron 35.0%
! AGTTTGGAATGTGGTATATC+AGG + Chr7:80532706-80532725 None:intergenic 35.0%
! GTTTGGAATGTGGTATATCA+GGG + Chr7:80532705-80532724 None:intergenic 35.0%
! TAGTATTGAGTCTAACCGAA+AGG - Chr7:80532674-80532693 MsG0780040644.01.T01:intron 35.0%
! TATACTCGCTCTTTTAAGCA+GGG + Chr7:80533111-80533130 None:intergenic 35.0%
! TTATACTCGCTCTTTTAAGC+AGG + Chr7:80533112-80533131 None:intergenic 35.0%
! TTTGGAATGTGGTATATCAG+GGG + Chr7:80532704-80532723 None:intergenic 35.0%
! TTTTAGCAGTCTAACTTTGG+AGG + Chr7:80533647-80533666 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG + Chr7:80533198-80533217 None:intergenic 35.0%
AAAAAAGTAGCGGCAGATCA+TGG + Chr7:80532928-80532947 None:intergenic 40.0%
AAACCTACATCAAAGCATGC+TGG + Chr7:80532366-80532385 None:intergenic 40.0%
AAGCCGATTGCAAAAATACG+GGG - Chr7:80531944-80531963 MsG0780040644.01.T01:intron 40.0%
AATCCTTCACAAATTGGCCA+TGG + Chr7:80532880-80532899 None:intergenic 40.0%
ACCTACACAGGAGTTTACTT+TGG + Chr7:80533545-80533564 None:intergenic 40.0%
ACTAAAACACCTAATACCGG+GGG + Chr7:80533417-80533436 None:intergenic 40.0%
AGAAGAAATAGAGCTCAACC+TGG - Chr7:80533614-80533633 MsG0780040644.01.T01:CDS 40.0%
AGTGCATTTGAAGAGTCTGT+TGG - Chr7:80531921-80531940 MsG0780040644.01.T01:intron 40.0%
ATGGCCACCATATAATACCA+TGG + Chr7:80532909-80532928 None:intergenic 40.0%
CAACACGGAATTCACTCAAT+TGG + Chr7:80532336-80532355 None:intergenic 40.0%
CTACCAGTGTTGCCAAATAT+CGG - Chr7:80532819-80532838 MsG0780040644.01.T01:intron 40.0%
CTCAGAAACTCTGTGGAATT+GGG - Chr7:80531444-80531463 MsG0780040644.01.T01:intron 40.0%
GAACAAAGTTACTAGAGGCA+TGG + Chr7:80533709-80533728 None:intergenic 40.0%
GAAGCCGATTGCAAAAATAC+GGG - Chr7:80531943-80531962 MsG0780040644.01.T01:intron 40.0%
GAATTGCTTCAGAGGTGAAA+TGG - Chr7:80531981-80532000 MsG0780040644.01.T01:intron 40.0%
GAGATGCTTCAAGAACAGAA+GGG + Chr7:80531427-80531446 None:intergenic 40.0%
GGAAGCCGATTGCAAAAATA+CGG - Chr7:80531942-80531961 MsG0780040644.01.T01:intron 40.0%
GGAAGTGAAGAAAGAGTTCA+AGG + Chr7:80531318-80531337 None:intergenic 40.0%
GGAGTTTAATGAGGATCTAC+TGG - Chr7:80531830-80531849 MsG0780040644.01.T01:intron 40.0%
GGGAAACAAGGAGTTTAATG+AGG - Chr7:80531821-80531840 MsG0780040644.01.T01:intron 40.0%
TAACCAGCATGCTTTGATGT+AGG - Chr7:80532360-80532379 MsG0780040644.01.T01:intron 40.0%
TCCAAAGTAAACTCCTGTGT+AGG - Chr7:80533541-80533560 MsG0780040644.01.T01:CDS 40.0%
TCTCAGAAACTCTGTGGAAT+TGG - Chr7:80531443-80531462 MsG0780040644.01.T01:intron 40.0%
TCTTGTCTCTTGAAGCACAA+GGG + Chr7:80533776-80533795 None:intergenic 40.0%
TGAGATGCTTCAAGAACAGA+AGG + Chr7:80531428-80531447 None:intergenic 40.0%
TGGAAATGCAAATACAGGGA+AGG + Chr7:80532486-80532505 None:intergenic 40.0%
TTCTTGTCTCTTGAAGCACA+AGG + Chr7:80533777-80533796 None:intergenic 40.0%
TTGTTTCCCTTCAATTCGGA+CGG + Chr7:80531810-80531829 None:intergenic 40.0%
! AATCTAGGATTGACCTACAC+AGG + Chr7:80533557-80533576 None:intergenic 40.0%
! ACGGAAGTTACGAAGTGTTT+CGG + Chr7:80531125-80531144 None:intergenic 40.0%
! ATACTCGCTCTTTTAAGCAG+GGG + Chr7:80533110-80533129 None:intergenic 40.0%
! ATTTTCTCCGTCCGAATTGA+AGG - Chr7:80531800-80531819 MsG0780040644.01.T01:intron 40.0%
! CATGCTGGTTAACTACAACA+CGG + Chr7:80532351-80532370 None:intergenic 40.0%
! CATTTTGTAGAAAGAGACGG+TGG + Chr7:80531295-80531314 None:intergenic 40.0%
! CTCCTTGTTTCCCTTCAATT+CGG + Chr7:80531814-80531833 None:intergenic 40.0%
! TTTTCTCCGTCCGAATTGAA+GGG - Chr7:80531801-80531820 MsG0780040644.01.T01:intron 40.0%
!! AACCCCCGTATTTTTGCAAT+CGG + Chr7:80531950-80531969 None:intergenic 40.0%
!! GGGGCTCTAAAAATTTGCAT+GGG + Chr7:80533398-80533417 None:intergenic 40.0%
!! TACTTGTTGTGCGAAGAACA+TGG + Chr7:80532457-80532476 None:intergenic 40.0%
!!! AGATTTTTTGACAGCAGCCA+TGG - Chr7:80532860-80532879 MsG0780040644.01.T01:intron 40.0%
!!! ATGCAAATTTTTAGAGCCCC+CGG - Chr7:80533398-80533417 MsG0780040644.01.T01:intron 40.0%
AACAACTCCTTGCCTCTTTG+GGG - Chr7:80531341-80531360 MsG0780040644.01.T01:CDS 45.0%
AATTACACAAGAGAACCGCG+CGG + Chr7:80533285-80533304 None:intergenic 45.0%
AGATGAATTACAGACCCACG+AGG + Chr7:80532419-80532438 None:intergenic 45.0%
AGCCGATTGCAAAAATACGG+GGG - Chr7:80531945-80531964 MsG0780040644.01.T01:intron 45.0%
AGTGTTTCGGAGTTGGAACA+TGG + Chr7:80531112-80531131 None:intergenic 45.0%
CAACAACTCCTTGCCTCTTT+GGG - Chr7:80531340-80531359 MsG0780040644.01.T01:CDS 45.0%
CCTAGATTTATACGTTGGCG+AGG - Chr7:80533569-80533588 MsG0780040644.01.T01:CDS 45.0%
CCTCGCCAACGTATAAATCT+AGG + Chr7:80533572-80533591 None:intergenic 45.0%
CGCCACAATCCTTCACAAAT+TGG + Chr7:80532886-80532905 None:intergenic 45.0%
GATTGAGCATTCGTTCTGTG+AGG - Chr7:80531898-80531917 MsG0780040644.01.T01:intron 45.0%
GGCCAATTTGTGAAGGATTG+TGG - Chr7:80532881-80532900 MsG0780040644.01.T01:intron 45.0%
GTCCGAATTGAAGGGAAACA+AGG - Chr7:80531809-80531828 MsG0780040644.01.T01:intron 45.0%
GTCTTGGTTGTTGCAGTTGA+CGG - Chr7:80533501-80533520 MsG0780040644.01.T01:CDS 45.0%
TAGCCGATATTTGGCAACAC+TGG + Chr7:80532825-80532844 None:intergenic 45.0%
TATATCAGGGGACACCCTTT+CGG + Chr7:80532692-80532711 None:intergenic 45.0%
TGTGGCGCCATGGTATTATA+TGG - Chr7:80532899-80532918 MsG0780040644.01.T01:intron 45.0%
TTCAAGAACAGAAGGGAACG+AGG + Chr7:80531420-80531439 None:intergenic 45.0%
TTGCTTGCCATGCAGAATCT+TGG + Chr7:80531577-80531596 None:intergenic 45.0%
TTTGTAGAAAGAGACGGTGG+CGG + Chr7:80531292-80531311 None:intergenic 45.0%
! AACTTTGGAGGTAAGAAGCC+AGG + Chr7:80533635-80533654 None:intergenic 45.0%
! CATGTAGCCAGTTTGGAATG+TGG + Chr7:80532715-80532734 None:intergenic 45.0%
! CTAGAGGCATGGAATTAGCA+AGG + Chr7:80533698-80533717 None:intergenic 45.0%
! GAAGCATCTCAGAAACTCTG+TGG - Chr7:80531437-80531456 MsG0780040644.01.T01:intron 45.0%
! GTGAGGATTGAGGTGGTTTT+GGG + Chr7:80531190-80531209 None:intergenic 45.0%
! GTGTTGCCAAATATCGGCTA+TGG - Chr7:80532825-80532844 MsG0780040644.01.T01:intron 45.0%
! GTTACGAAGTGTTTCGGAGT+TGG + Chr7:80531119-80531138 None:intergenic 45.0%
! TTGCCAAATATCGGCTATGG+CGG - Chr7:80532828-80532847 MsG0780040644.01.T01:intron 45.0%
!! CCTATTGTTGACTCGAGAAC+CGG - Chr7:80531392-80531411 MsG0780040644.01.T01:CDS 45.0%
!! GCTCTTTTAAGCAGGGGTAT+AGG + Chr7:80533104-80533123 None:intergenic 45.0%
!! GGGGGCTCTAAAAATTTGCA+TGG + Chr7:80533399-80533418 None:intergenic 45.0%
!!! TTTTTAGAGCCCCCGGTATT+AGG - Chr7:80533405-80533424 MsG0780040644.01.T01:intron 45.0%
AACAGAAGGGAACGAGGATC+CGG + Chr7:80531414-80531433 None:intergenic 50.0%
AAGAGGCAAGGAGTTGTTGC+TGG + Chr7:80531339-80531358 None:intergenic 50.0%
AGACTGAGAGAACCCCAAAG+AGG + Chr7:80531356-80531375 None:intergenic 50.0%
AGCACAAGGGATGCATCAAC+AGG + Chr7:80533763-80533782 None:intergenic 50.0%
CAGCCATGGCCAATTTGTGA+AGG - Chr7:80532874-80532893 MsG0780040644.01.T01:intron 50.0%
CAGCGGCGAATTTGGAGAAA+GGG + Chr7:80531214-80531233 None:intergenic 50.0%
CCGGTTCTCGAGTCAACAAT+AGG + Chr7:80531395-80531414 None:intergenic 50.0%
GCAACAACTCCTTGCCTCTT+TGG - Chr7:80531339-80531358 MsG0780040644.01.T01:CDS 50.0%
GCACAAGGGATGCATCAACA+GGG + Chr7:80533762-80533781 None:intergenic 50.0%
GGCGCCATGGTATTATATGG+TGG - Chr7:80532902-80532921 MsG0780040644.01.T01:intron 50.0%
TCTCTCAGTCTGGCTGATAG+TGG - Chr7:80531365-80531384 MsG0780040644.01.T01:CDS 50.0%
! CGTGAGGATTGAGGTGGTTT+TGG + Chr7:80531191-80531210 None:intergenic 50.0%
! GAATTTGGAGAAAGGGCGTG+AGG + Chr7:80531207-80531226 None:intergenic 50.0%
!! TCTTTGGGGTTCTCTCAGTC+TGG - Chr7:80531355-80531374 MsG0780040644.01.T01:CDS 50.0%
CCAACTGAGCTAAGCTCACG+AGG + Chr7:80533137-80533156 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - Chr7:80533134-80533153 MsG0780040644.01.T01:CDS 55.0%
CGGAGTTGGAACATGGAGAC+TGG + Chr7:80531105-80531124 None:intergenic 55.0%
CGTGAGCTTAGCTCAGTTGG+TGG - Chr7:80533137-80533156 MsG0780040644.01.T01:CDS 55.0%
GAGAGAACCCCAAAGAGGCA+AGG + Chr7:80531351-80531370 None:intergenic 55.0%
GCACCGCCATAGCCGATATT+TGG + Chr7:80532834-80532853 None:intergenic 55.0%
GCAGCGGCGAATTTGGAGAA+AGG + Chr7:80531215-80531234 None:intergenic 55.0%
TACACGGTTATACCTCCGCG+CGG - Chr7:80533267-80533286 MsG0780040644.01.T01:intron 55.0%
TGTGAAGGATTGTGGCGCCA+TGG - Chr7:80532889-80532908 MsG0780040644.01.T01:intron 55.0%
! AAAGAGACGGTGGCGGTCAT+TGG + Chr7:80531285-80531304 None:intergenic 55.0%
! AAAGGGCGTGAGGATTGAGG+TGG + Chr7:80531197-80531216 None:intergenic 55.0%
! CGCGGAGGTATAACCGTGTA+AGG + Chr7:80533267-80533286 None:intergenic 55.0%
! GAGAAAGGGCGTGAGGATTG+AGG + Chr7:80531200-80531219 None:intergenic 55.0%
! GCAGTTGACGGACAGGAAGT+GGG - Chr7:80533513-80533532 MsG0780040644.01.T01:CDS 55.0%
! GGTTGTTGCAGTTGACGGAC+AGG - Chr7:80533506-80533525 MsG0780040644.01.T01:CDS 55.0%
! TATCGGCTATGGCGGTGCAA+CGG - Chr7:80532836-80532855 MsG0780040644.01.T01:intron 55.0%
! TGCAGTTGACGGACAGGAAG+TGG - Chr7:80533512-80533531 MsG0780040644.01.T01:CDS 55.0%
GGAGGAGACGGCGATGAATG+CGG + Chr7:80531264-80531283 None:intergenic 60.0%
GTGGCGGTCATTGGAGGAGA+CGG + Chr7:80531276-80531295 None:intergenic 60.0%
TACACAAGAGAACCGCGCGG+AGG + Chr7:80533282-80533301 None:intergenic 60.0%
GGAGACGGCGATGAATGCGG+CGG + Chr7:80531261-80531280 None:intergenic 65.0%
GGCTGCTGCAGCGGCGAATT+TGG + Chr7:80531222-80531241 None:intergenic 65.0%
! GAGACGGTGGCGGTCATTGG+AGG + Chr7:80531282-80531301 None:intergenic 65.0%
AGCAGTGGCGGCTGCTGCAG+CGG + Chr7:80531231-80531250 None:intergenic 70.0%
GACGGCGATGAATGCGGCGG+TGG + Chr7:80531258-80531277 None:intergenic 70.0%
GCTGCAGCAGCCGCCACTGC+TGG - Chr7:80531230-80531249 MsG0780040644.01.T01:three_prime_UTR 75.0%
GGCGGTGGCACCAGCAGTGG+CGG + Chr7:80531243-80531262 None:intergenic 75.0%
TGCGGCGGTGGCACCAGCAG+TGG + Chr7:80531246-80531265 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 80531056 80533891 80531056 ID=MsG0780040644.01;Name=MsG0780040644.01
Chr7 mRNA 80531056 80533891 80531056 ID=MsG0780040644.01.T01;Parent=MsG0780040644.01;Name=MsG0780040644.01.T01;_AED=0.47;_eAED=0.47;_QI=96|1|1|1|1|1|4|235|282
Chr7 exon 80531056 80531430 80531056 ID=MsG0780040644.01.T01:exon:18608;Parent=MsG0780040644.01.T01
Chr7 exon 80532474 80532565 80532474 ID=MsG0780040644.01.T01:exon:18607;Parent=MsG0780040644.01.T01
Chr7 exon 80532953 80533202 80532953 ID=MsG0780040644.01.T01:exon:18606;Parent=MsG0780040644.01.T01
Chr7 exon 80533429 80533891 80533429 ID=MsG0780040644.01.T01:exon:18605;Parent=MsG0780040644.01.T01
Chr7 five_prime_UTR 80533796 80533891 80533796 ID=MsG0780040644.01.T01:five_prime_utr;Parent=MsG0780040644.01.T01
Chr7 CDS 80533429 80533795 80533429 ID=MsG0780040644.01.T01:cds;Parent=MsG0780040644.01.T01
Chr7 CDS 80532953 80533202 80532953 ID=MsG0780040644.01.T01:cds;Parent=MsG0780040644.01.T01
Chr7 CDS 80532474 80532565 80532474 ID=MsG0780040644.01.T01:cds;Parent=MsG0780040644.01.T01
Chr7 CDS 80531291 80531430 80531291 ID=MsG0780040644.01.T01:cds;Parent=MsG0780040644.01.T01
Chr7 three_prime_UTR 80531056 80531290 80531056 ID=MsG0780040644.01.T01:three_prime_utr;Parent=MsG0780040644.01.T01
Gene Sequence

>MsG0780040644.01.T01

ATGGTATCACTACGCTTCCCTTTCACATTTTCTAACCCAAAACCACCTCAATCCTCACGCCCTTTCTCCAAATTCGCCGCTGCAGCAGCCGCCACTGCTGGTGCCACCGCCGCATTCATCGCCGTCTCCTCCAATGACCGCCACCGTCTCTTTCTACAAAATGCCTTGAACTCTTTCTTCACTTCCAGCAACAACTCCTTGCCTCTTTGGGGTTCTCTCAGTCTGGCTGATAGTGGTGTTCCTATTGTTGACTCGAGAACCGGATCCTCGTTCCCTTCTGTTCTTGAAGCATCTCAGAAACTCTGTGGAATTGGGTTAAGAACGAAAAGAATTTTGGGTTTGAAGAACATTGATGTATATGCTTTTGGTGTTTATGCTGACGATGATGACGTAAAGAGATGTCTGTCTGAGAAATATGGGAAATTTTCTCCGTCCGAATTGAAGGGAAACAAGGAGTTTAATGAGGATCTACTGGAAAATGATATACATTTAACAGTAAGGCTTCAAATTGTTTATAGTAGATTGAGCATTCGTTCTGTGAGGAGTGCATTTGAAGAGTCTGTTGGAAGCCGATTGCAAAAATACGGGGGTTCAGATAATAAAGAATTGCTTCAGAGGTTTACTTCACAGTTTAGAGATGAAATCAAAATACCTCGTGGGTCTGTAATTCATCTCACAAGAGAGAAGGGCCATGTTCTTCGCACAACAATTGACGGACAGGAAGTGGGAAGCATCCAAAGTAAACTCCTGTGTAGGTCAATCCTAGATTTATACGTTGGCGAGGAACCATTTGATAAACAAGCTAAAGAAGAAATAGAGCTCAACCTGGCTTCTTACCTCCAAAGTTAG

Protein sequence

>MsG0780040644.01.T01

MVSLRFPFTFSNPKPPQSSRPFSKFAAAAAATAGATAAFIAVSSNDRHRLFLQNALNSFFTSSNNSLPLWGSLSLADSGVPIVDSRTGSSFPSVLEASQKLCGIGLRTKRILGLKNIDVYAFGVYADDDDVKRCLSEKYGKFSPSELKGNKEFNEDLLENDIHLTVRLQIVYSRLSIRSVRSAFEESVGSRLQKYGGSDNKELLQRFTSQFRDEIKIPRGSVIHLTREKGHVLRTTIDGQEVGSIQSKLLCRSILDLYVGEEPFDKQAKEEIELNLASYLQS*