AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004852.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004852.01.T01 MTR_1g088420 90.132 456 13 1 1 424 1 456 0.0 744
MsG0180004852.01.T01 MTR_3g108700 36.364 308 166 8 105 394 83 378 8.25e-49 175
MsG0180004852.01.T01 MTR_4g036495 30.412 194 121 4 119 311 38 218 3.65e-18 87.4
MsG0180004852.01.T01 MTR_4g011370 26.910 301 171 8 111 389 6 279 2.37e-17 84.3
MsG0180004852.01.T01 MTR_4g011370 26.910 301 171 8 111 389 6 279 3.16e-17 84.0
MsG0180004852.01.T01 MTR_4g011370 26.910 301 171 8 111 389 6 279 4.35e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004852.01.T01 AT2G47590 66.047 430 98 5 29 424 32 447 0.0 517
MsG0180004852.01.T01 AT5G24850 38.699 292 160 8 110 394 73 352 1.16e-55 193
MsG0180004852.01.T01 AT3G15620 28.571 294 191 7 109 393 15 298 1.47e-18 87.8
MsG0180004852.01.T01 AT3G15620 28.571 294 191 7 109 393 15 298 1.86e-18 88.2
MsG0180004852.01.T01 AT4G25290 28.780 205 125 6 111 311 28 215 3.09e-13 72.0

Find 164 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGTACTTTAAGCTTAT+TGG 0.135446 1:-83593478 None:intergenic
GTTGAATTGGCGAAGGAAAT+TGG 0.181084 1:+83593924 MsG0180004852.01.T01:CDS
TGATAGTAAAGATGGGATTT+TGG 0.196469 1:-83593445 None:intergenic
AAGATTATGGAGCATTAATT+AGG 0.204246 1:-83597649 None:intergenic
ATCTATGGGTCCAGAATTTA+TGG 0.205391 1:+83597453 MsG0180004852.01.T01:three_prime_UTR
GAGGATATGCCTTCAAATTA+TGG 0.232389 1:+83594098 MsG0180004852.01.T01:CDS
CCTAAGCTACAAGTTTCTTA+TGG 0.234167 1:+83597233 MsG0180004852.01.T01:exon
GTTGGTACTTTAAGCTTATT+GGG 0.245968 1:-83593477 None:intergenic
TCAACCAAACAAGGGGTTTA+AGG 0.252150 1:+83595063 MsG0180004852.01.T01:CDS
TTGTCATACTCGAAAGATTA+TGG 0.253775 1:-83597662 None:intergenic
CTCTGGTGGTGTTTGGTTGT+TGG 0.268353 1:-83593319 None:intergenic
CATCCTCAATTCAAACAAAA+TGG 0.286670 1:+83593293 MsG0180004852.01.T01:exon
TAGAGACAGAGTTCAGAAAT+TGG 0.288265 1:+83594127 MsG0180004852.01.T01:CDS
AGTAGGACGGTGAGGGATTA+AGG 0.295386 1:-83593613 None:intergenic
ACAGAAACACCCCTTCAATA+AGG 0.315520 1:-83597713 None:intergenic
GGAGGAGAGAGGAGAGAGAA+AGG 0.315575 1:-83593410 None:intergenic
TTGTTCATCTTACTATGTTA+TGG 0.315772 1:+83597625 MsG0180004852.01.T01:three_prime_UTR
TTGAATCGGTTTCGGATCTT+AGG 0.318994 1:+83593838 MsG0180004852.01.T01:CDS
TGGGAAGCCGGAGACGGTTT+TGG 0.320562 1:+83593902 MsG0180004852.01.T01:CDS
TGAGGAAGAGCCATAAATTC+TGG 0.334279 1:-83597463 None:intergenic
TGAGGATTTGCCGTTTAGTT+TGG 0.341260 1:+83594076 MsG0180004852.01.T01:CDS
GCAATCACATTGTATCAATA+TGG 0.342904 1:+83597321 MsG0180004852.01.T01:three_prime_UTR
CCATCCTTAAACCCCTTGTT+TGG 0.346676 1:-83595067 None:intergenic
TTGAATTGGCGAAGGAAATT+GGG 0.347653 1:+83593925 MsG0180004852.01.T01:CDS
TGGTGATATTCCTACTTTGA+TGG 0.349316 1:+83594217 MsG0180004852.01.T01:CDS
TCTGGTGGTGTTTGGTTGTT+GGG 0.358189 1:-83593318 None:intergenic
TTCCTCAATAACACATACTT+TGG 0.361266 1:+83597479 MsG0180004852.01.T01:three_prime_UTR
TCTCTTTCTCTGGTGGTGTT+TGG 0.362699 1:-83593326 None:intergenic
GATTATGGGAAATCTTCATC+TGG 0.364632 1:+83593777 MsG0180004852.01.T01:CDS
CTTCTTCCGCCGCTGCTCTT+CGG 0.373965 1:+83593640 MsG0180004852.01.T01:CDS
TGCTCCAGCCACTGCTTGTA+CGG 0.374998 1:+83597201 MsG0180004852.01.T01:CDS
TTCGGAGAACCGCCATTGTT+TGG 0.378423 1:+83593658 MsG0180004852.01.T01:CDS
AGGTTGAGATTCTCTTTCTC+TGG 0.381169 1:-83593336 None:intergenic
TGTTAGTGTTCCCTTATTGA+AGG 0.389632 1:+83597702 MsG0180004852.01.T01:three_prime_UTR
TGAGGCTGTGGATCAACTTA+AGG 0.390363 1:+83594166 MsG0180004852.01.T01:CDS
AGATTATGGAGCATTAATTA+GGG 0.390607 1:-83597648 None:intergenic
GGATCTTAGGAAGAATCTTA+AGG 0.401605 1:+83593851 MsG0180004852.01.T01:CDS
GGGGCACAAGATAGTATATA+TGG 0.403980 1:+83595088 MsG0180004852.01.T01:CDS
TCATCTGGGTTTGATAAAAC+AGG 0.408572 1:+83593792 MsG0180004852.01.T01:CDS
TTTGTTGGAAGGGGAAGAAT+GGG 0.416847 1:-83593541 None:intergenic
GGAAGTGGTGGTTCCGGTGA+GGG 0.418998 1:-83593363 None:intergenic
GGAAGGGGAAGAATGGGTTT+TGG 0.423682 1:-83593535 None:intergenic
AGATGGAGGAGAAGATTGAA+GGG 0.424911 1:+83593994 MsG0180004852.01.T01:CDS
CCATAAGAAACTTGTAGCTT+AGG 0.428628 1:-83597233 None:intergenic
CGGATCTTGTGGTGAGAGTT+GGG 0.432143 1:+83593883 MsG0180004852.01.T01:CDS
GCAGGATCAAAACAATAAAC+AGG 0.432831 1:-83593753 None:intergenic
CTAAAACCACCATAATTTGA+AGG 0.438317 1:-83594107 None:intergenic
GGTGGTGGAAGTGGTGGTTC+CGG 0.439900 1:-83593369 None:intergenic
CGAAGAGCAGCGGCGGAAGA+AGG 0.444187 1:-83593639 None:intergenic
CAGAAACACCCCTTCAATAA+GGG 0.446870 1:-83597712 None:intergenic
AGGAGAGTGGTGATTTGAGA+GGG 0.452904 1:-83593593 None:intergenic
TCCTCAATAACACATACTTT+GGG 0.459183 1:+83597480 MsG0180004852.01.T01:three_prime_UTR
ATTCCTACTTTGATGGACCT+TGG 0.462040 1:+83594224 MsG0180004852.01.T01:CDS
ACTTTAAGCTTATTGGGTGG+TGG 0.462910 1:-83593471 None:intergenic
GCTCCAGCCACTGCTTGTAC+GGG 0.464062 1:+83597202 MsG0180004852.01.T01:CDS
GAGGAGAGAGGAGAGAGAAA+GGG 0.465168 1:-83593409 None:intergenic
GTTAGTGTTCCCTTATTGAA+GGG 0.467319 1:+83597703 MsG0180004852.01.T01:three_prime_UTR
GGCATATCCTCCAAACTAAA+CGG 0.469033 1:-83594086 None:intergenic
TAGTTCTACTAAGAAACAAC+TGG 0.469217 1:+83597174 MsG0180004852.01.T01:CDS
AATTTCTCCATGGTTGGCAA+TGG 0.472113 1:+83595129 MsG0180004852.01.T01:CDS
AAGTTGATCCACAGCCTCAA+TGG 0.473649 1:-83594162 None:intergenic
ATTTCTCCATGGTTGGCAAT+GGG 0.474742 1:+83595130 MsG0180004852.01.T01:CDS
AAGGAGAGTGGTGATTTGAG+AGG 0.475617 1:-83593594 None:intergenic
TATAGATTAAATCACAATAA+GGG 0.476378 1:-83597743 None:intergenic
AAGATGGAGGAGAAGATTGA+AGG 0.477202 1:+83593993 MsG0180004852.01.T01:CDS
ATGCAAAATTTCTCCATGGT+TGG 0.479998 1:+83595123 MsG0180004852.01.T01:CDS
GAAGATGAAAGAGGAGAATG+TGG 0.481224 1:+83594016 MsG0180004852.01.T01:CDS
TTCTCATGATGAGGTGAAGA+TGG 0.481763 1:+83593977 MsG0180004852.01.T01:CDS
CCAAACAAGGGGTTTAAGGA+TGG 0.482113 1:+83595067 MsG0180004852.01.T01:CDS
GAGGCTGTGGATCAACTTAA+GGG 0.483254 1:+83594167 MsG0180004852.01.T01:CDS
ACAGAGGCTTAAAAGATTTG+CGG 0.483489 1:+83595027 MsG0180004852.01.T01:CDS
GGATTTGCCGTTTAGTTTGG+AGG 0.485893 1:+83594079 MsG0180004852.01.T01:CDS
AATTCAACCAAAACCGTCTC+CGG 0.486723 1:-83593909 None:intergenic
TCGGATCTTGTGGTGAGAGT+TGG 0.490430 1:+83593882 MsG0180004852.01.T01:CDS
ATTGATACAATGTGATTGCT+AGG 0.495913 1:-83597317 None:intergenic
TTGGAATAAAGGGAGGAGAG+AGG 0.500643 1:-83593421 None:intergenic
AGGAAGAATCTTAAGGCAAG+AGG 0.500841 1:+83593858 MsG0180004852.01.T01:CDS
GGTGGTGGTGATAGTAAAGA+TGG 0.501732 1:-83593453 None:intergenic
GAGTTCAGAAATTGGAGATA+AGG 0.502516 1:+83594135 MsG0180004852.01.T01:CDS
TTCAGTCTCCCCTCCTGTCA+TGG 0.502535 1:-83594999 None:intergenic
AGAGAAGCAAGTGACGGTGG+TGG 0.502601 1:-83593384 None:intergenic
ATGAGTGAGTGATGAAGCTT+GGG 0.503400 1:-83593499 None:intergenic
TATCTGTTACCTACTACCAC+TGG 0.503676 1:-83593264 None:intergenic
CATGAACACGAAGATCATTA+CGG 0.504071 1:-83593683 None:intergenic
AAGGAAAACCATTGAGGCTG+TGG 0.504571 1:+83594154 MsG0180004852.01.T01:CDS
GATGAGTGAGTGATGAAGCT+TGG 0.512379 1:-83593500 None:intergenic
TCCCAAAGTATGTGTTATTG+AGG 0.518644 1:-83597481 None:intergenic
TTGAGATTCTCTTTCTCTGG+TGG 0.519022 1:-83593333 None:intergenic
TATTGAAGGGGTGTTTCTGT+TGG 0.519103 1:+83597716 MsG0180004852.01.T01:three_prime_UTR
TTAAGCTTATTGGGTGGTGG+TGG 0.520554 1:-83593468 None:intergenic
GCAAGTGACGGTGGTGGAAG+TGG 0.521335 1:-83593378 None:intergenic
TGTGGTGAGAGTTGGGAAGC+CGG 0.527613 1:+83593890 MsG0180004852.01.T01:CDS
CGGTGAGGGATTAAGGAGAG+TGG 0.528589 1:-83593606 None:intergenic
ACACTAACATAGAAGAGGTA+TGG 0.529469 1:-83597688 None:intergenic
GGCAAGAGGGTCGGATCTTG+TGG 0.529684 1:+83593872 MsG0180004852.01.T01:CDS
TCTCGTGGTGATGTTCAGCT+TGG 0.531237 1:+83594197 MsG0180004852.01.T01:CDS
TCCATCTGCCACAATGTCAC+AGG 0.531575 1:+83594253 MsG0180004852.01.T01:CDS
AGACCAAGGTCCATCAAAGT+AGG 0.537251 1:-83594227 None:intergenic
GTGTCTAATTCTTCCATGAC+AGG 0.539757 1:+83594986 MsG0180004852.01.T01:CDS
ATAAACAGGTAAAACAGAAA+CGG 0.539924 1:-83593739 None:intergenic
ATTATGGGAAATCTTCATCT+GGG 0.540323 1:+83593778 MsG0180004852.01.T01:CDS
ACCTGTGACATTGTGGCAGA+TGG 0.543053 1:-83594254 None:intergenic
TTTCATGCAAAATTTCTCCA+TGG 0.544798 1:+83595119 MsG0180004852.01.T01:CDS
GAAGATTTCCCATAATCAGC+AGG 0.545258 1:-83593771 None:intergenic
GCACCCGTACAAGCAGTGGC+TGG 0.547932 1:-83597205 None:intergenic
TCTCAACCTCACACCCTCAC+CGG 0.549207 1:+83593350 MsG0180004852.01.T01:CDS
TGGAAGTGGTGGTTCCGGTG+AGG 0.552597 1:-83593364 None:intergenic
AGGCATCCCATTGCCAACCA+TGG 0.557353 1:-83595136 None:intergenic
GTGTGAAGCTCAACCAAACA+AGG 0.558520 1:+83595054 MsG0180004852.01.T01:CDS
TTAGTGTTCCCTTATTGAAG+GGG 0.559394 1:+83597704 MsG0180004852.01.T01:three_prime_UTR
GAAGAGCAGCGGCGGAAGAA+GGG 0.560143 1:-83593638 None:intergenic
GCGGCGGAAGAAGGGTCAGT+AGG 0.561786 1:-83593630 None:intergenic
GATTGAAGGGAAGATGAAAG+AGG 0.562308 1:+83594007 MsG0180004852.01.T01:CDS
AGCTGAAGAAAACTGCCAGC+AGG 0.564000 1:+83595182 MsG0180004852.01.T01:CDS
CAAACAAGGGGTTTAAGGAT+GGG 0.566462 1:+83595068 MsG0180004852.01.T01:CDS
TAAGTTGTGAAGAATAAAGG+AGG 0.568916 1:+83597587 MsG0180004852.01.T01:three_prime_UTR
TGAATTGGCGAAGGAAATTG+GGG 0.569351 1:+83593926 MsG0180004852.01.T01:CDS
AAGCGCACCCGTACAAGCAG+TGG 0.573556 1:-83597209 None:intergenic
CTTAAGGGTCTTCCTTCTCG+TGG 0.573683 1:+83594182 MsG0180004852.01.T01:CDS
GAGAGTTGGGAAGCCGGAGA+CGG 0.579515 1:+83593896 MsG0180004852.01.T01:CDS
GTGGTTCCGGTGAGGGTGTG+AGG 0.583680 1:-83593356 None:intergenic
GAAGGGTCAGTAGGACGGTG+AGG 0.584070 1:-83593621 None:intergenic
AAACAAGGGGTTTAAGGATG+GGG 0.584425 1:+83595069 MsG0180004852.01.T01:CDS
AAGTACTTTGTATCACGTTG+AGG 0.590177 1:+83594058 MsG0180004852.01.T01:CDS
TGCTGTGTATTGTCATAGAG+AGG 0.595822 1:+83593953 MsG0180004852.01.T01:CDS
CAGCTCATCAAACATTACGC+GGG 0.598766 1:-83595164 None:intergenic
GGCGGTTCTCCGAAGAGCAG+CGG 0.599963 1:-83593649 None:intergenic
CGGAAGAAGGGTCAGTAGGA+CGG 0.602620 1:-83593626 None:intergenic
GATATGCCTTCAAATTATGG+TGG 0.605212 1:+83594101 MsG0180004852.01.T01:CDS
GGTACTTTAAGCTTATTGGG+TGG 0.607149 1:-83593474 None:intergenic
ACATACAACAGAACTTGTGA+AGG 0.608947 1:-83597292 None:intergenic
AAGGGTCAGTAGGACGGTGA+GGG 0.610539 1:-83593620 None:intergenic
AGCTCATCAAACATTACGCG+GGG 0.610573 1:-83595163 None:intergenic
ATAGATCTAGTTAGAAAAGA+CGG 0.611599 1:-83597436 None:intergenic
CTAATTCTTCCATGACAGGA+GGG 0.614699 1:+83594990 MsG0180004852.01.T01:CDS
GAATCTTAAGGCAAGAGGGT+CGG 0.615487 1:+83593863 MsG0180004852.01.T01:CDS
TAGAGAGGTTTCTCATGATG+AGG 0.616362 1:+83593968 MsG0180004852.01.T01:CDS
TAATTCTTCCATGACAGGAG+GGG 0.617885 1:+83594991 MsG0180004852.01.T01:CDS
GGTTCTCCGAAGAGCAGCGG+CGG 0.624520 1:-83593646 None:intergenic
AGGGAACACTAACATAGAAG+AGG 0.624791 1:-83597693 None:intergenic
GTGGTGGTGATAGTAAAGAT+GGG 0.627435 1:-83593452 None:intergenic
GAGAGAGAAGCAAGTGACGG+TGG 0.630808 1:-83593387 None:intergenic
TCTAATTCTTCCATGACAGG+AGG 0.636840 1:+83594989 MsG0180004852.01.T01:CDS
ATCATTACGGAACCAAACAA+TGG 0.638151 1:-83593670 None:intergenic
CATACAACAGAACTTGTGAA+GGG 0.641338 1:-83597291 None:intergenic
TCAGCTCATCAAACATTACG+CGG 0.642702 1:-83595165 None:intergenic
GGAAGAATCTTAAGGCAAGA+GGG 0.642727 1:+83593859 MsG0180004852.01.T01:CDS
GATGAAAGAGGAGAATGTGG+AGG 0.644433 1:+83594019 MsG0180004852.01.T01:CDS
GGAGATAAGGAAAACCATTG+AGG 0.646842 1:+83594148 MsG0180004852.01.T01:CDS
AGGGAGAGAGAAGCAAGTGA+CGG 0.649765 1:-83593390 None:intergenic
GTCATGGAAGAATTAGACAC+TGG 0.650273 1:-83594983 None:intergenic
CTCATCAAACATTACGCGGG+GGG 0.652994 1:-83595161 None:intergenic
AGTGACGGTGGTGGAAGTGG+TGG 0.654986 1:-83593375 None:intergenic
AGCTGAACATCACCACGAGA+AGG 0.657028 1:-83594194 None:intergenic
TGGCAGATGGATTAAGACCA+AGG 0.660136 1:-83594241 None:intergenic
TCATGATGAGGTGAAGATGG+AGG 0.660818 1:+83593980 MsG0180004852.01.T01:CDS
ATACAACAGAACTTGTGAAG+GGG 0.661152 1:-83597290 None:intergenic
GTGAAGCTCAACCAAACAAG+GGG 0.664067 1:+83595056 MsG0180004852.01.T01:CDS
TGTGAAGCTCAACCAAACAA+GGG 0.674233 1:+83595055 MsG0180004852.01.T01:CDS
GTGAGTGATGAAGCTTGGGT+TGG 0.675328 1:-83593495 None:intergenic
ATTGGCGAAGGAAATTGGGG+CGG 0.682178 1:+83593929 MsG0180004852.01.T01:CDS
GGGAGACTGAAGCACTACAG+AGG 0.688139 1:+83595011 MsG0180004852.01.T01:CDS
GCTCATCAAACATTACGCGG+GGG 0.709645 1:-83595162 None:intergenic
ATTACGGAACCAAACAATGG+CGG 0.734414 1:-83593667 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAACCAA+CGG - Chr1:83596371-83596390 None:intergenic 10.0%
!! AAATACATTTAAAAAAGTTA+TGG - Chr1:83595608-83595627 None:intergenic 10.0%
!! TTAAATGTATTTAACTAAAA+AGG + Chr1:83595616-83595635 MsG0180004852.01.T01:intron 10.0%
!!! TTTTTCTGTTTAAAAATATT+AGG + Chr1:83595219-83595238 MsG0180004852.01.T01:intron 10.0%
!! TAAGAAATATTATTATGATG+CGG + Chr1:83596783-83596802 MsG0180004852.01.T01:intron 15.0%
!! TGTTAAAATCTAATTTGATT+AGG - Chr1:83597000-83597019 None:intergenic 15.0%
!!! AAGCTTTTTACATTATTTTT+TGG + Chr1:83597344-83597363 MsG0180004852.01.T01:three_prime_UTR 15.0%
!!! TTATTTTCTCAAATTATTAC+TGG - Chr1:83594420-83594439 None:intergenic 15.0%
!!! TTTTTACATTATTTTTTGGA+TGG + Chr1:83597348-83597367 MsG0180004852.01.T01:three_prime_UTR 15.0%
!! AAAAGATTTAAATGGTAAGT+AGG + Chr1:83596616-83596635 MsG0180004852.01.T01:intron 20.0%
!! AAAGATTTAAATGGTAAGTA+GGG + Chr1:83596617-83596636 MsG0180004852.01.T01:intron 20.0%
!! AAAGTTATAACTTCCTAATT+AGG - Chr1:83595487-83595506 None:intergenic 20.0%
!! ACATTATTACAAACTAAACT+AGG + Chr1:83595874-83595893 MsG0180004852.01.T01:intron 20.0%
!! AGAACAAAAAAAAGTAGAAA+AGG - Chr1:83596413-83596432 None:intergenic 20.0%
!! AGATATAGAGAAAATATGAT+CGG - Chr1:83596742-83596761 None:intergenic 20.0%
!! CGGTTAATTTATTTAACAAT+AGG + Chr1:83595833-83595852 MsG0180004852.01.T01:intron 20.0%
!! TCTTTGATTAGATTGTATAT+TGG + Chr1:83594562-83594581 MsG0180004852.01.T01:intron 20.0%
!!! ACATGTTTAAATCTTTAAAG+AGG - Chr1:83595791-83595810 None:intergenic 20.0%
!!! ATATTTTTTGGTAATAAACC+TGG - Chr1:83597155-83597174 None:intergenic 20.0%
!!! CATTACTTTTAAGATTTGAT+GGG + Chr1:83596582-83596601 MsG0180004852.01.T01:intron 20.0%
!!! CTTAGTAGAACTATATTTTT+TGG - Chr1:83597167-83597186 None:intergenic 20.0%
!!! GTTATGGAATTTAGTTTTAA+TGG + Chr1:83594602-83594621 MsG0180004852.01.T01:intron 20.0%
!!! TCATTACTTTTAAGATTTGA+TGG + Chr1:83596581-83596600 MsG0180004852.01.T01:intron 20.0%
!!! TGAAAAAGAAGATTTTTTGA+AGG - Chr1:83593568-83593587 None:intergenic 20.0%
!!! TTTTAAACAGAAAAACATCT+GGG - Chr1:83595214-83595233 None:intergenic 20.0%
!!! TTTTAAGTTGTGAAGAATAA+AGG + Chr1:83597584-83597603 MsG0180004852.01.T01:three_prime_UTR 20.0%
!!! TTTTCTTTTCCCAAAATATA+CGG + Chr1:83595429-83595448 MsG0180004852.01.T01:intron 20.0%
!!! TTTTGAGTTTTCATTGTATT+AGG + Chr1:83596290-83596309 MsG0180004852.01.T01:intron 20.0%
!!! TTTTTAAACAGAAAAACATC+TGG - Chr1:83595215-83595234 None:intergenic 20.0%
! AAAAAAAAAAAAACCAACGG+TGG - Chr1:83596368-83596387 None:intergenic 25.0%
! AAAAAGATTTCCTTTCACAA+TGG + Chr1:83594686-83594705 MsG0180004852.01.T01:intron 25.0%
! ATAAACAGGTAAAACAGAAA+CGG - Chr1:83593742-83593761 None:intergenic 25.0%
! ATAGATCTAGTTAGAAAAGA+CGG - Chr1:83597439-83597458 None:intergenic 25.0%
! ATGAGTTATGTACTTACAAT+TGG - Chr1:83596143-83596162 None:intergenic 25.0%
! ATTATTATGATGCGGTAAAA+TGG + Chr1:83596791-83596810 MsG0180004852.01.T01:intron 25.0%
! ATTCAAAAACCATACTAGAA+AGG - Chr1:83596562-83596581 None:intergenic 25.0%
! CCAGACTTATTCATTAAATT+AGG + Chr1:83595582-83595601 MsG0180004852.01.T01:intron 25.0%
! CCTAATTTAATGAATAAGTC+TGG - Chr1:83595585-83595604 None:intergenic 25.0%
! CTAAATCCATAACAATAAGA+AGG - Chr1:83596907-83596926 None:intergenic 25.0%
! CTGTCTGAAAAAGATTTAAA+TGG + Chr1:83596608-83596627 MsG0180004852.01.T01:intron 25.0%
! TGTAATCATAATGTGTTTCA+TGG + Chr1:83594364-83594383 MsG0180004852.01.T01:intron 25.0%
! TTATCATAGTAGTGTATGAT+GGG + Chr1:83595525-83595544 MsG0180004852.01.T01:intron 25.0%
! TTATTATGATGCGGTAAAAT+GGG + Chr1:83596792-83596811 MsG0180004852.01.T01:intron 25.0%
! TTGTTCATCTTACTATGTTA+TGG + Chr1:83597625-83597644 MsG0180004852.01.T01:three_prime_UTR 25.0%
! TTTATCATAGTAGTGTATGA+TGG + Chr1:83595524-83595543 MsG0180004852.01.T01:intron 25.0%
!! AAGATTATGGAGCATTAATT+AGG - Chr1:83597652-83597671 None:intergenic 25.0%
!! AGAAATTTTGCATGAAAAGT+TGG - Chr1:83595116-83595135 None:intergenic 25.0%
!! AGAAGATTGTTTTCCTAATT+AGG + Chr1:83595471-83595490 MsG0180004852.01.T01:intron 25.0%
!! AGATTATGGAGCATTAATTA+GGG - Chr1:83597651-83597670 None:intergenic 25.0%
!! GTGTTTAGTGATAAAAGTTT+TGG - Chr1:83597093-83597112 None:intergenic 25.0%
!! TAGTTTTCTCCGTATATTTT+GGG - Chr1:83595441-83595460 None:intergenic 25.0%
!! TCTTTTCTAACTAGATCTAT+GGG + Chr1:83597439-83597458 MsG0180004852.01.T01:three_prime_UTR 25.0%
!!! AGATTTTTTGAAGGTTTTGT+TGG - Chr1:83593559-83593578 None:intergenic 25.0%
!!! AGTTCTAGGGAAAATTAATT+GGG + Chr1:83596925-83596944 MsG0180004852.01.T01:intron 25.0%
!!! ATGGAATTTAGTTTTAATGG+AGG + Chr1:83594605-83594624 MsG0180004852.01.T01:intron 25.0%
!!! ATTGTTATGGATTTAGTTCT+AGG + Chr1:83596911-83596930 MsG0180004852.01.T01:intron 25.0%
!!! TAGTTCTAGGGAAAATTAAT+TGG + Chr1:83596924-83596943 MsG0180004852.01.T01:intron 25.0%
!!! TGCTAGTTTTTTGATTGAAT+CGG + Chr1:83593824-83593843 MsG0180004852.01.T01:CDS 25.0%
!!! TGGAATTTAGTTTTAATGGA+GGG + Chr1:83594606-83594625 MsG0180004852.01.T01:intron 25.0%
!!! TTCAGAACAACACTTTTTTA+AGG - Chr1:83597395-83597414 None:intergenic 25.0%
!!! TTGTTATGGATTTAGTTCTA+GGG + Chr1:83596912-83596931 MsG0180004852.01.T01:intron 25.0%
!!! TTGTTTGTTTTATGCTACAT+TGG + Chr1:83594315-83594334 MsG0180004852.01.T01:intron 25.0%
!!! TTTTTTGATTGAATCGGTTT+CGG + Chr1:83593830-83593849 MsG0180004852.01.T01:CDS 25.0%
AAACTCAAAACCAGAAAGTT+TGG - Chr1:83596280-83596299 None:intergenic 30.0%
AAACTTCACAGTTGAATTTG+TGG - Chr1:83597070-83597089 None:intergenic 30.0%
AACTTCACAGTTGAATTTGT+GGG - Chr1:83597069-83597088 None:intergenic 30.0%
AAGTACTAGATATCTTTGTC+TGG + Chr1:83594820-83594839 MsG0180004852.01.T01:intron 30.0%
AATATATCAGCCATTGTGAA+AGG - Chr1:83594699-83594718 None:intergenic 30.0%
AATTCATCAGTGAGTATTCA+TGG - Chr1:83595253-83595272 None:intergenic 30.0%
ACGAAAAGGAAATTCTGTAA+TGG - Chr1:83596196-83596215 None:intergenic 30.0%
AGTACTAGATATCTTTGTCT+GGG + Chr1:83594821-83594840 MsG0180004852.01.T01:intron 30.0%
ATCAAAAAACTAGCACGATA+AGG - Chr1:83593819-83593838 None:intergenic 30.0%
ATTATGGGAAATCTTCATCT+GGG + Chr1:83593778-83593797 MsG0180004852.01.T01:CDS 30.0%
ATTGATACAATGTGATTGCT+AGG - Chr1:83597320-83597339 None:intergenic 30.0%
CATCCTCAATTCAAACAAAA+TGG + Chr1:83593293-83593312 MsG0180004852.01.T01:exon 30.0%
CATTACTCAATCAAGCTAAT+AGG - Chr1:83594728-83594747 None:intergenic 30.0%
CGTCAACAATGAATCTATAT+TGG + Chr1:83594935-83594954 MsG0180004852.01.T01:intron 30.0%
CTAAAACCACCATAATTTGA+AGG - Chr1:83594110-83594129 None:intergenic 30.0%
GCAATCACATTGTATCAATA+TGG + Chr1:83597321-83597340 MsG0180004852.01.T01:three_prime_UTR 30.0%
GGGAGAGAAATTTGAAAAAT+GGG + Chr1:83597500-83597519 MsG0180004852.01.T01:three_prime_UTR 30.0%
GTAAAATGGGGAAATATGAA+CGG + Chr1:83596805-83596824 MsG0180004852.01.T01:intron 30.0%
GTTGGTACTTTAAGCTTATT+GGG - Chr1:83593480-83593499 None:intergenic 30.0%
TAAGTTGTGAAGAATAAAGG+AGG + Chr1:83597587-83597606 MsG0180004852.01.T01:three_prime_UTR 30.0%
TACAAACTAAACTAGGCTTT+CGG + Chr1:83595881-83595900 MsG0180004852.01.T01:intron 30.0%
TATTATGATGCGGTAAAATG+GGG + Chr1:83596793-83596812 MsG0180004852.01.T01:intron 30.0%
TATTTAAACGCCTACATTCT+GGG + Chr1:83596233-83596252 MsG0180004852.01.T01:intron 30.0%
TCATATTTACATGAACTGAC+TGG - Chr1:83595684-83595703 None:intergenic 30.0%
TCCTCAATAACACATACTTT+GGG + Chr1:83597480-83597499 MsG0180004852.01.T01:three_prime_UTR 30.0%
TCTCTTCCTTCTTATTGTTA+TGG + Chr1:83596898-83596917 MsG0180004852.01.T01:intron 30.0%
TGGGAGAGAAATTTGAAAAA+TGG + Chr1:83597499-83597518 MsG0180004852.01.T01:three_prime_UTR 30.0%
TTAAATGGTAAGTAGGGATA+TGG + Chr1:83596623-83596642 MsG0180004852.01.T01:intron 30.0%
TTAGAAATGATCGAGTGTTA+TGG + Chr1:83594586-83594605 MsG0180004852.01.T01:intron 30.0%
TTCACAATGGCTGATATATT+GGG + Chr1:83594699-83594718 MsG0180004852.01.T01:intron 30.0%
TTCCTCAATAACACATACTT+TGG + Chr1:83597479-83597498 MsG0180004852.01.T01:three_prime_UTR 30.0%
TTGTCATACTCGAAAGATTA+TGG - Chr1:83597665-83597684 None:intergenic 30.0%
TTTCACAATGGCTGATATAT+TGG + Chr1:83594698-83594717 MsG0180004852.01.T01:intron 30.0%
TTTCATGCAAAATTTCTCCA+TGG + Chr1:83595119-83595138 MsG0180004852.01.T01:CDS 30.0%
! AACGATTAACCTTTCTAGTA+TGG + Chr1:83596550-83596569 MsG0180004852.01.T01:intron 30.0%
! GATAGTAAAGATGGGATTTT+GGG - Chr1:83593447-83593466 None:intergenic 30.0%
! GTCTTTTCTAACTAGATCTA+TGG + Chr1:83597438-83597457 MsG0180004852.01.T01:three_prime_UTR 30.0%
! TAGTTCTACTAAGAAACAAC+TGG + Chr1:83597174-83597193 MsG0180004852.01.T01:CDS 30.0%
! TGAATCTGTTGATGAAAAGT+AGG + Chr1:83594779-83594798 MsG0180004852.01.T01:intron 30.0%
! TGATAGTAAAGATGGGATTT+TGG - Chr1:83593448-83593467 None:intergenic 30.0%
!! ACTGTTTTGTTGCCTTTTTT+GGG + Chr1:83596320-83596339 MsG0180004852.01.T01:intron 30.0%
!! ATCATTTTTGCTTGATGAAG+CGG - Chr1:83595297-83595316 None:intergenic 30.0%
!! CTAGCTTGTTTATCTAGTAT+AGG - Chr1:83595931-83595950 None:intergenic 30.0%
!! CTAGTTTTCTCCGTATATTT+TGG - Chr1:83595442-83595461 None:intergenic 30.0%
!! GTTCCATTTTGTTTGAATTG+AGG - Chr1:83593299-83593318 None:intergenic 30.0%
!! TACTGTTTTGTTGCCTTTTT+TGG + Chr1:83596319-83596338 MsG0180004852.01.T01:intron 30.0%
!!! AATTTAGTTTTAATGGAGGG+AGG + Chr1:83594609-83594628 MsG0180004852.01.T01:intron 30.0%
!!! TTTTGAAGGTTTTGTTGGAA+GGG - Chr1:83593554-83593573 None:intergenic 30.0%
!!! TTTTTGAAGGTTTTGTTGGA+AGG - Chr1:83593555-83593574 None:intergenic 30.0%
AAGTACTTTGTATCACGTTG+AGG + Chr1:83594058-83594077 MsG0180004852.01.T01:CDS 35.0%
AATCAAAACTAACTGATGCC+AGG - Chr1:83596054-83596073 None:intergenic 35.0%
ACAAACTAAACTAGGCTTTC+GGG + Chr1:83595882-83595901 MsG0180004852.01.T01:intron 35.0%
ACACTAACATAGAAGAGGTA+TGG - Chr1:83597691-83597710 None:intergenic 35.0%
ACAGAGGCTTAAAAGATTTG+CGG + Chr1:83595027-83595046 MsG0180004852.01.T01:CDS 35.0%
ACATACAACAGAACTTGTGA+AGG - Chr1:83597295-83597314 None:intergenic 35.0%
ACCAATCACACAATTGAGTA+AGG - Chr1:83597115-83597134 None:intergenic 35.0%
ACCTTACTCAATTGTGTGAT+TGG + Chr1:83597111-83597130 MsG0180004852.01.T01:intron 35.0%
ACGCTTGAAAAATGGAACTT+AGG - Chr1:83594900-83594919 None:intergenic 35.0%
AGAAATTTGAAAAATGGGCG+AGG + Chr1:83597505-83597524 MsG0180004852.01.T01:three_prime_UTR 35.0%
ATACAACAGAACTTGTGAAG+GGG - Chr1:83597293-83597312 None:intergenic 35.0%
ATCAACAGATTCAAACCTGA+AGG - Chr1:83594772-83594791 None:intergenic 35.0%
ATCATTACGGAACCAAACAA+TGG - Chr1:83593673-83593692 None:intergenic 35.0%
ATCTATGGGTCCAGAATTTA+TGG + Chr1:83597453-83597472 MsG0180004852.01.T01:three_prime_UTR 35.0%
ATGCAAAATTTCTCCATGGT+TGG + Chr1:83595123-83595142 MsG0180004852.01.T01:CDS 35.0%
CATACAACAGAACTTGTGAA+GGG - Chr1:83597294-83597313 None:intergenic 35.0%
CATCCAAAACTGGAACTAAT+TGG + Chr1:83595324-83595343 MsG0180004852.01.T01:intron 35.0%
CATGAACACGAAGATCATTA+CGG - Chr1:83593686-83593705 None:intergenic 35.0%
CTAGGGAAAATTAATTGGGT+TGG + Chr1:83596929-83596948 MsG0180004852.01.T01:intron 35.0%
CTATTTAAACGCCTACATTC+TGG + Chr1:83596232-83596251 MsG0180004852.01.T01:intron 35.0%
GACTACATGTAGAGTTTAGT+CGG + Chr1:83595813-83595832 MsG0180004852.01.T01:intron 35.0%
GACTTCTTTAGGTAATGTTC+TGG + Chr1:83595371-83595390 MsG0180004852.01.T01:intron 35.0%
GAGGATATGCCTTCAAATTA+TGG + Chr1:83594098-83594117 MsG0180004852.01.T01:CDS 35.0%
GAGTTCAGAAATTGGAGATA+AGG + Chr1:83594135-83594154 MsG0180004852.01.T01:CDS 35.0%
GATATGCCTTCAAATTATGG+TGG + Chr1:83594101-83594120 MsG0180004852.01.T01:CDS 35.0%
GATATTAGTATACCACCTTC+AGG + Chr1:83594754-83594773 MsG0180004852.01.T01:intron 35.0%
GATTATGGGAAATCTTCATC+TGG + Chr1:83593777-83593796 MsG0180004852.01.T01:CDS 35.0%
GCACAATCTAGTTATACTGT+CGG + Chr1:83596836-83596855 MsG0180004852.01.T01:intron 35.0%
GCAGGATCAAAACAATAAAC+AGG - Chr1:83593756-83593775 None:intergenic 35.0%
GCTTCATCAAGCAAAAATGA+TGG + Chr1:83595296-83595315 MsG0180004852.01.T01:intron 35.0%
GGATCTTAGGAAGAATCTTA+AGG + Chr1:83593851-83593870 MsG0180004852.01.T01:CDS 35.0%
GTTAGTGTTCCCTTATTGAA+GGG + Chr1:83597703-83597722 MsG0180004852.01.T01:three_prime_UTR 35.0%
TAGAGACAGAGTTCAGAAAT+TGG + Chr1:83594127-83594146 MsG0180004852.01.T01:CDS 35.0%
TCAACATCTCAAAAAACCAG+TGG + Chr1:83593248-83593267 MsG0180004852.01.T01:five_prime_UTR 35.0%
TCATCAAGCAAAAATGATGG+TGG + Chr1:83595299-83595318 MsG0180004852.01.T01:intron 35.0%
TCATCTGGGTTTGATAAAAC+AGG + Chr1:83593792-83593811 MsG0180004852.01.T01:CDS 35.0%
TGATAAGTACAAACTCGACT+GGG - Chr1:83596485-83596504 None:intergenic 35.0%
TGGTGATATTCCTACTTTGA+TGG + Chr1:83594217-83594236 MsG0180004852.01.T01:CDS 35.0%
TGTTAGTGTTCCCTTATTGA+AGG + Chr1:83597702-83597721 MsG0180004852.01.T01:three_prime_UTR 35.0%
TGTTATCTGGTTAATTGTCC+AGG + Chr1:83597134-83597153 MsG0180004852.01.T01:intron 35.0%
TTACATGTACCAACACATGT+CGG + Chr1:83594454-83594473 MsG0180004852.01.T01:intron 35.0%
TTAGTGTTCCCTTATTGAAG+GGG + Chr1:83597704-83597723 MsG0180004852.01.T01:three_prime_UTR 35.0%
TTGAATTGGCGAAGGAAATT+GGG + Chr1:83593925-83593944 MsG0180004852.01.T01:CDS 35.0%
TTGCTGTAAGAGAAACGAAA+AGG - Chr1:83596210-83596229 None:intergenic 35.0%
! CAACCAATTAGTTCCAGTTT+TGG - Chr1:83595330-83595349 None:intergenic 35.0%
! GGTTGGTACTTTAAGCTTAT+TGG - Chr1:83593481-83593500 None:intergenic 35.0%
! GTTATTGTTCTTGGTAGCAT+AGG + Chr1:83596673-83596692 MsG0180004852.01.T01:intron 35.0%
! TCCCAAAGTATGTGTTATTG+AGG - Chr1:83597484-83597503 None:intergenic 35.0%
!! ACACCTTTTATGAGAAGTGT+TGG + Chr1:83594487-83594506 MsG0180004852.01.T01:intron 35.0%
!! ATTGTGTGATTGGTGTTATC+TGG + Chr1:83597121-83597140 MsG0180004852.01.T01:intron 35.0%
!! CATTTTCTAGCCAAACTTTC+TGG + Chr1:83596267-83596286 MsG0180004852.01.T01:intron 35.0%
!! CTGTTTTGTTGCCTTTTTTG+GGG + Chr1:83596321-83596340 MsG0180004852.01.T01:intron 35.0%
!! GTTTTGATCCTGCTGATTAT+GGG + Chr1:83593763-83593782 MsG0180004852.01.T01:CDS 35.0%
!! TACATTGGCTCATTCTTAGA+TGG + Chr1:83594330-83594349 MsG0180004852.01.T01:intron 35.0%
!!! GGATTTTGGGTTGGAATAAA+GGG - Chr1:83593434-83593453 None:intergenic 35.0%
!!! TGTTTTGATCCTGCTGATTA+TGG + Chr1:83593762-83593781 MsG0180004852.01.T01:CDS 35.0%
!!! TTTGAAGGTTTTGTTGGAAG+GGG - Chr1:83593553-83593572 None:intergenic 35.0%
AAACAAGGGGTTTAAGGATG+GGG + Chr1:83595069-83595088 MsG0180004852.01.T01:CDS 40.0%
AACAGATTCAAACCTGAAGG+TGG - Chr1:83594769-83594788 None:intergenic 40.0%
AAGATGGAGGAGAAGATTGA+AGG + Chr1:83593993-83594012 MsG0180004852.01.T01:CDS 40.0%
AATTCAACCAAAACCGTCTC+CGG - Chr1:83593912-83593931 None:intergenic 40.0%
AATTTCTCCATGGTTGGCAA+TGG + Chr1:83595129-83595148 MsG0180004852.01.T01:CDS 40.0%
ACAGAAACACCCCTTCAATA+AGG - Chr1:83597716-83597735 None:intergenic 40.0%
ACTTTAAGCTTATTGGGTGG+TGG - Chr1:83593474-83593493 None:intergenic 40.0%
AGATGGAGGAGAAGATTGAA+GGG + Chr1:83593994-83594013 MsG0180004852.01.T01:CDS 40.0%
AGGAAGAATCTTAAGGCAAG+AGG + Chr1:83593858-83593877 MsG0180004852.01.T01:CDS 40.0%
AGGGAACACTAACATAGAAG+AGG - Chr1:83597696-83597715 None:intergenic 40.0%
AGGTTGAGATTCTCTTTCTC+TGG - Chr1:83593339-83593358 None:intergenic 40.0%
AGTTGTCCAAGACTTGAATC+GGG - Chr1:83595981-83596000 None:intergenic 40.0%
ATAACACCCCCTACATTTCT+AGG - Chr1:83596658-83596677 None:intergenic 40.0%
ATAGCTAGCATTGCTTAGCT+GGG + Chr1:83596028-83596047 MsG0180004852.01.T01:intron 40.0%
ATGAGTGAGTGATGAAGCTT+GGG - Chr1:83593502-83593521 None:intergenic 40.0%
ATTACGGAACCAAACAATGG+CGG - Chr1:83593670-83593689 None:intergenic 40.0%
ATTTCTCCATGGTTGGCAAT+GGG + Chr1:83595130-83595149 MsG0180004852.01.T01:CDS 40.0%
CAAACAAGGGGTTTAAGGAT+GGG + Chr1:83595068-83595087 MsG0180004852.01.T01:CDS 40.0%
CAGAAACACCCCTTCAATAA+GGG - Chr1:83597715-83597734 None:intergenic 40.0%
CAGTTGTCCAAGACTTGAAT+CGG - Chr1:83595982-83596001 None:intergenic 40.0%
CATGCTGAACTGTATCAAAC+TGG - Chr1:83596109-83596128 None:intergenic 40.0%
CCACCAACACTTCTCATAAA+AGG - Chr1:83594493-83594512 None:intergenic 40.0%
CTAATTCTTCCATGACAGGA+GGG + Chr1:83594990-83595009 MsG0180004852.01.T01:CDS 40.0%
CTCAAAAAACCAGTGGTAGT+AGG + Chr1:83593255-83593274 MsG0180004852.01.T01:five_prime_UTR 40.0%
GAAAAACACCTGTGACATTG+TGG - Chr1:83594264-83594283 None:intergenic 40.0%
GAAGATGAAAGAGGAGAATG+TGG + Chr1:83594016-83594035 MsG0180004852.01.T01:CDS 40.0%
GAAGATTTCCCATAATCAGC+AGG - Chr1:83593774-83593793 None:intergenic 40.0%
GACCGTTCAGATATTCTCTT+AGG + Chr1:83595649-83595668 MsG0180004852.01.T01:intron 40.0%
GATTGAAGGGAAGATGAAAG+AGG + Chr1:83594007-83594026 MsG0180004852.01.T01:CDS 40.0%
GGAAGAATCTTAAGGCAAGA+GGG + Chr1:83593859-83593878 MsG0180004852.01.T01:CDS 40.0%
GGAGATAAGGAAAACCATTG+AGG + Chr1:83594148-83594167 MsG0180004852.01.T01:CDS 40.0%
GGCATATCCTCCAAACTAAA+CGG - Chr1:83594089-83594108 None:intergenic 40.0%
GGCCTAAGAGAATATCTGAA+CGG - Chr1:83595654-83595673 None:intergenic 40.0%
GGGGCACAAGATAGTATATA+TGG + Chr1:83595088-83595107 MsG0180004852.01.T01:CDS 40.0%
GGTACTTTAAGCTTATTGGG+TGG - Chr1:83593477-83593496 None:intergenic 40.0%
GGTTGGATCTTTCAGTGAAA+GGG + Chr1:83596946-83596965 MsG0180004852.01.T01:intron 40.0%
GTCATGGAAGAATTAGACAC+TGG - Chr1:83594986-83595005 None:intergenic 40.0%
GTGATAAGTACAAACTCGAC+TGG - Chr1:83596486-83596505 None:intergenic 40.0%
GTGTCTAATTCTTCCATGAC+AGG + Chr1:83594986-83595005 MsG0180004852.01.T01:CDS 40.0%
GTTGAATTGGCGAAGGAAAT+TGG + Chr1:83593924-83593943 MsG0180004852.01.T01:CDS 40.0%
TAATTCTTCCATGACAGGAG+GGG + Chr1:83594991-83595010 MsG0180004852.01.T01:CDS 40.0%
TACATGTACCAACACATGTC+GGG + Chr1:83594455-83594474 MsG0180004852.01.T01:intron 40.0%
TAGAGAGGTTTCTCATGATG+AGG + Chr1:83593968-83593987 MsG0180004852.01.T01:CDS 40.0%
TATAGCTAGCATTGCTTAGC+TGG + Chr1:83596027-83596046 MsG0180004852.01.T01:intron 40.0%
TATCTGTTACCTACTACCAC+TGG - Chr1:83593267-83593286 None:intergenic 40.0%
TCAACCAAACAAGGGGTTTA+AGG + Chr1:83595063-83595082 MsG0180004852.01.T01:CDS 40.0%
TCAGCTCATCAAACATTACG+CGG - Chr1:83595168-83595187 None:intergenic 40.0%
TCCCCTTTCCTAGAAATGTA+GGG + Chr1:83596647-83596666 MsG0180004852.01.T01:intron 40.0%
TCTAATTCTTCCATGACAGG+AGG + Chr1:83594989-83595008 MsG0180004852.01.T01:CDS 40.0%
TGAATTGGCGAAGGAAATTG+GGG + Chr1:83593926-83593945 MsG0180004852.01.T01:CDS 40.0%
TGAGGAAGAGCCATAAATTC+TGG - Chr1:83597466-83597485 None:intergenic 40.0%
TGCTGTGTATTGTCATAGAG+AGG + Chr1:83593953-83593972 MsG0180004852.01.T01:CDS 40.0%
TGTGAAGCTCAACCAAACAA+GGG + Chr1:83595055-83595074 MsG0180004852.01.T01:CDS 40.0%
TTCCAGCAACGCTTGAAAAA+TGG - Chr1:83594908-83594927 None:intergenic 40.0%
TTCCCCTTTCCTAGAAATGT+AGG + Chr1:83596646-83596665 MsG0180004852.01.T01:intron 40.0%
TTCTCATGATGAGGTGAAGA+TGG + Chr1:83593977-83593996 MsG0180004852.01.T01:CDS 40.0%
TTGAGATTCTCTTTCTCTGG+TGG - Chr1:83593336-83593355 None:intergenic 40.0%
TTGGCTAGAAAATGCAGAGA+CGG - Chr1:83596261-83596280 None:intergenic 40.0%
TTTGTTGGAAGGGGAAGAAT+GGG - Chr1:83593544-83593563 None:intergenic 40.0%
! ATTCCTACTTTGATGGACCT+TGG + Chr1:83594224-83594243 MsG0180004852.01.T01:CDS 40.0%
! CTTCTCATAAAAGGTGTGTC+CGG - Chr1:83594484-83594503 None:intergenic 40.0%
! GCTGTGTTGCATCATACTTT+TGG + Chr1:83595547-83595566 MsG0180004852.01.T01:intron 40.0%
! GTGGTGGTGATAGTAAAGAT+GGG - Chr1:83593455-83593474 None:intergenic 40.0%
! TGAGGATTTGCCGTTTAGTT+TGG + Chr1:83594076-83594095 MsG0180004852.01.T01:CDS 40.0%
! TTGAATCGGTTTCGGATCTT+AGG + Chr1:83593838-83593857 MsG0180004852.01.T01:CDS 40.0%
! TTTTGTTGGAAGGGGAAGAA+TGG - Chr1:83593545-83593564 None:intergenic 40.0%
!! ATGTGGAGGTGAAGTGTTTT+TGG + Chr1:83594033-83594052 MsG0180004852.01.T01:CDS 40.0%
!! CATGAACTGACTGGTTTGTT+TGG - Chr1:83595675-83595694 None:intergenic 40.0%
!! GATGTTTGAGTTGCTATGGA+GGG + Chr1:83595349-83595368 MsG0180004852.01.T01:intron 40.0%
!! GGTTGATGTTTGAGTTGCTA+TGG + Chr1:83595345-83595364 MsG0180004852.01.T01:intron 40.0%
!! GTAAAGATGGGATTTTGGGT+TGG - Chr1:83593443-83593462 None:intergenic 40.0%
!! TATTGAAGGGGTGTTTCTGT+TGG + Chr1:83597716-83597735 MsG0180004852.01.T01:three_prime_UTR 40.0%
!! TGATGTTTGAGTTGCTATGG+AGG + Chr1:83595348-83595367 MsG0180004852.01.T01:intron 40.0%
!! TGTGGAGGTGAAGTGTTTTT+GGG + Chr1:83594034-83594053 MsG0180004852.01.T01:CDS 40.0%
!!! CCTTTTATGAGAAGTGTTGG+TGG + Chr1:83594490-83594509 MsG0180004852.01.T01:intron 40.0%
!!! GGGATTTTGGGTTGGAATAA+AGG - Chr1:83593435-83593454 None:intergenic 40.0%
!!! TTCCATTTTTCAAGCGTTGC+TGG + Chr1:83594903-83594922 MsG0180004852.01.T01:intron 40.0%
!!! TTTTGGGTTGGAATAAAGGG+AGG - Chr1:83593431-83593450 None:intergenic 40.0%
AAGGAAAACCATTGAGGCTG+TGG + Chr1:83594154-83594173 MsG0180004852.01.T01:CDS 45.0%
AAGGAGAGTGGTGATTTGAG+AGG - Chr1:83593597-83593616 None:intergenic 45.0%
AAGTACAAACTCGACTGGGT+GGG - Chr1:83596481-83596500 None:intergenic 45.0%
AGACCAAGGTCCATCAAAGT+AGG - Chr1:83594230-83594249 None:intergenic 45.0%
AGCTCATCAAACATTACGCG+GGG - Chr1:83595166-83595185 None:intergenic 45.0%
AGGAGAGTGGTGATTTGAGA+GGG - Chr1:83593596-83593615 None:intergenic 45.0%
ATGTCCCAAACTTAGGGCAT+GGG - Chr1:83595955-83595974 None:intergenic 45.0%
CAGCTCATCAAACATTACGC+GGG - Chr1:83595167-83595186 None:intergenic 45.0%
CCAAACAAGGGGTTTAAGGA+TGG + Chr1:83595067-83595086 MsG0180004852.01.T01:CDS 45.0%
CCATCCTTAAACCCCTTGTT+TGG - Chr1:83595070-83595089 None:intergenic 45.0%
CCCCTTTCCTAGAAATGTAG+GGG + Chr1:83596648-83596667 MsG0180004852.01.T01:intron 45.0%
CCCTTTCCTAGAAATGTAGG+GGG + Chr1:83596649-83596668 MsG0180004852.01.T01:intron 45.0%
GAATCTTAAGGCAAGAGGGT+CGG + Chr1:83593863-83593882 MsG0180004852.01.T01:CDS 45.0%
GAGGCTGTGGATCAACTTAA+GGG + Chr1:83594167-83594186 MsG0180004852.01.T01:CDS 45.0%
GATGAAAGAGGAGAATGTGG+AGG + Chr1:83594019-83594038 MsG0180004852.01.T01:CDS 45.0%
GATGAGTGAGTGATGAAGCT+TGG - Chr1:83593503-83593522 None:intergenic 45.0%
GGGTTGGATCTTTCAGTGAA+AGG + Chr1:83596945-83596964 MsG0180004852.01.T01:intron 45.0%
GTGAAGCTCAACCAAACAAG+GGG + Chr1:83595056-83595075 MsG0180004852.01.T01:CDS 45.0%
GTGTGAAGCTCAACCAAACA+AGG + Chr1:83595054-83595073 MsG0180004852.01.T01:CDS 45.0%
TAAGTACAAACTCGACTGGG+TGG - Chr1:83596482-83596501 None:intergenic 45.0%
TAGACCCATGCCCTAAGTTT+GGG + Chr1:83595948-83595967 MsG0180004852.01.T01:intron 45.0%
TCATGATGAGGTGAAGATGG+AGG + Chr1:83593980-83593999 MsG0180004852.01.T01:CDS 45.0%
TGAGGCTGTGGATCAACTTA+AGG + Chr1:83594166-83594185 MsG0180004852.01.T01:CDS 45.0%
TGCTATGGAGGGACTTCTTT+AGG + Chr1:83595360-83595379 MsG0180004852.01.T01:intron 45.0%
TTGGAATAAAGGGAGGAGAG+AGG - Chr1:83593424-83593443 None:intergenic 45.0%
! AAGTTGATCCACAGCCTCAA+TGG - Chr1:83594165-83594184 None:intergenic 45.0%
! ACCCCCTACATTTCTAGGAA+AGG - Chr1:83596653-83596672 None:intergenic 45.0%
! CCCCCTACATTTCTAGGAAA+GGG - Chr1:83596652-83596671 None:intergenic 45.0%
! CCCCTACATTTCTAGGAAAG+GGG - Chr1:83596651-83596670 None:intergenic 45.0%
! GGTGGTGGTGATAGTAAAGA+TGG - Chr1:83593456-83593475 None:intergenic 45.0%
! TATTGGTTGTAACCTCGTGC+AGG + Chr1:83594952-83594971 MsG0180004852.01.T01:intron 45.0%
! TCTCTTTCTCTGGTGGTGTT+TGG - Chr1:83593329-83593348 None:intergenic 45.0%
! TCTGGTGGTGTTTGGTTGTT+GGG - Chr1:83593321-83593340 None:intergenic 45.0%
! TTAAGCTTATTGGGTGGTGG+TGG - Chr1:83593471-83593490 None:intergenic 45.0%
!! GGATTTGCCGTTTAGTTTGG+AGG + Chr1:83594079-83594098 MsG0180004852.01.T01:CDS 45.0%
!! GTAGGGGGTGTTATTGTTCT+TGG + Chr1:83596664-83596683 MsG0180004852.01.T01:intron 45.0%
!! GTGGAGGTGAAGTGTTTTTG+GGG + Chr1:83594035-83594054 MsG0180004852.01.T01:CDS 45.0%
!! TGGCAGATGGATTAAGACCA+AGG - Chr1:83594244-83594263 None:intergenic 45.0%
!!! GGAGACGGTTTTGGTTGAAT+TGG + Chr1:83593911-83593930 MsG0180004852.01.T01:CDS 45.0%
!!! GGTTTTGGTTGAATTGGCGA+AGG + Chr1:83593917-83593936 MsG0180004852.01.T01:CDS 45.0%
ACCTGTGACATTGTGGCAGA+TGG - Chr1:83594257-83594276 None:intergenic 50.0%
AGCATGCAGCAGAAACAAGC+AGG - Chr1:83594856-83594875 None:intergenic 50.0%
AGCTGAACATCACCACGAGA+AGG - Chr1:83594197-83594216 None:intergenic 50.0%
AGCTGAAGAAAACTGCCAGC+AGG + Chr1:83595182-83595201 MsG0180004852.01.T01:CDS 50.0%
AGGGAGAGAGAAGCAAGTGA+CGG - Chr1:83593393-83593412 None:intergenic 50.0%
AGTAGGACGGTGAGGGATTA+AGG - Chr1:83593616-83593635 None:intergenic 50.0%
ATTGGCGAAGGAAATTGGGG+CGG + Chr1:83593929-83593948 MsG0180004852.01.T01:CDS 50.0%
CATGAGCCCGATTCAAGTCT+TGG + Chr1:83595972-83595991 MsG0180004852.01.T01:intron 50.0%
CATGTCCCAAACTTAGGGCA+TGG - Chr1:83595956-83595975 None:intergenic 50.0%
CGGATCTTGTGGTGAGAGTT+GGG + Chr1:83593883-83593902 MsG0180004852.01.T01:CDS 50.0%
CTAAACTAGGCTTTCGGGCT+AGG + Chr1:83595887-83595906 MsG0180004852.01.T01:intron 50.0%
CTAGACCCATGCCCTAAGTT+TGG + Chr1:83595947-83595966 MsG0180004852.01.T01:intron 50.0%
CTCATCAAACATTACGCGGG+GGG - Chr1:83595164-83595183 None:intergenic 50.0%
CTTAAGGGTCTTCCTTCTCG+TGG + Chr1:83594182-83594201 MsG0180004852.01.T01:CDS 50.0%
GAGGAGAGAGGAGAGAGAAA+GGG - Chr1:83593412-83593431 None:intergenic 50.0%
GCTCATCAAACATTACGCGG+GGG - Chr1:83595165-83595184 None:intergenic 50.0%
GGGCTCATGTCCCAAACTTA+GGG - Chr1:83595961-83595980 None:intergenic 50.0%
GTGAGTGATGAAGCTTGGGT+TGG - Chr1:83593498-83593517 None:intergenic 50.0%
GTTGTAACCTCGTGCAGGAT+GGG + Chr1:83594957-83594976 MsG0180004852.01.T01:intron 50.0%
TCCATCTGCCACAATGTCAC+AGG + Chr1:83594253-83594272 MsG0180004852.01.T01:CDS 50.0%
TCGGATCTTGTGGTGAGAGT+TGG + Chr1:83593882-83593901 MsG0180004852.01.T01:CDS 50.0%
TTCGGAGAACCGCCATTGTT+TGG + Chr1:83593658-83593677 MsG0180004852.01.T01:CDS 50.0%
! CTCTGGTGGTGTTTGGTTGT+TGG - Chr1:83593322-83593341 None:intergenic 50.0%
! GATGGTGGCTCATCCAAAAC+TGG + Chr1:83595314-83595333 MsG0180004852.01.T01:intron 50.0%
! TCTCGTGGTGATGTTCAGCT+TGG + Chr1:83594197-83594216 MsG0180004852.01.T01:CDS 50.0%
!! AGGGGAAGAATGGGTTTTGG+TGG - Chr1:83593535-83593554 None:intergenic 50.0%
!! GGAAGGGGAAGAATGGGTTT+TGG - Chr1:83593538-83593557 None:intergenic 50.0%
!!! CCTTTTTTGGGGTCTGCAGA+CGG + Chr1:83596332-83596351 MsG0180004852.01.T01:intron 50.0%
AAGGGTCAGTAGGACGGTGA+GGG - Chr1:83593623-83593642 None:intergenic 55.0%
ACCAACACATGTCGGGACAC+CGG + Chr1:83594462-83594481 MsG0180004852.01.T01:intron 55.0%
AGAGAAGCAAGTGACGGTGG+TGG - Chr1:83593387-83593406 None:intergenic 55.0%
AGAGACGGTGCCCAGAATGT+AGG - Chr1:83596246-83596265 None:intergenic 55.0%
AGGCATCCCATTGCCAACCA+TGG - Chr1:83595139-83595158 None:intergenic 55.0%
CCGTCTGCAGACCCCAAAAA+AGG - Chr1:83596335-83596354 None:intergenic 55.0%
CGGAAGAAGGGTCAGTAGGA+CGG - Chr1:83593629-83593648 None:intergenic 55.0%
CGGGCTCATGTCCCAAACTT+AGG - Chr1:83595962-83595981 None:intergenic 55.0%
CGGTGAGGGATTAAGGAGAG+TGG - Chr1:83593609-83593628 None:intergenic 55.0%
GAGAGAGAAGCAAGTGACGG+TGG - Chr1:83593390-83593409 None:intergenic 55.0%
GGAGGAGAGAGGAGAGAGAA+AGG - Chr1:83593413-83593432 None:intergenic 55.0%
GGTTGTAACCTCGTGCAGGA+TGG + Chr1:83594956-83594975 MsG0180004852.01.T01:intron 55.0%
TAGCATTGCTTAGCTGGGCC+TGG + Chr1:83596033-83596052 MsG0180004852.01.T01:intron 55.0%
TCTCAACCTCACACCCTCAC+CGG + Chr1:83593350-83593369 MsG0180004852.01.T01:CDS 55.0%
TGCTCCAGCCACTGCTTGTA+CGG + Chr1:83597201-83597220 MsG0180004852.01.T01:CDS 55.0%
TGTGGTGAGAGTTGGGAAGC+CGG + Chr1:83593890-83593909 MsG0180004852.01.T01:CDS 55.0%
TTCAGTCTCCCCTCCTGTCA+TGG - Chr1:83595002-83595021 None:intergenic 55.0%
! GGGAGACTGAAGCACTACAG+AGG + Chr1:83595011-83595030 MsG0180004852.01.T01:CDS 55.0%
AAGCGCACCCGTACAAGCAG+TGG - Chr1:83597212-83597231 None:intergenic 60.0%
CAAACATTACGCGGGGGGAG+AGG - Chr1:83595159-83595178 None:intergenic 60.0%
CTTCTTCCGCCGCTGCTCTT+CGG + Chr1:83593640-83593659 MsG0180004852.01.T01:CDS 60.0%
GAAGAGCAGCGGCGGAAGAA+GGG - Chr1:83593641-83593660 None:intergenic 60.0%
GAAGGGTCAGTAGGACGGTG+AGG - Chr1:83593624-83593643 None:intergenic 60.0%
GAGAGTTGGGAAGCCGGAGA+CGG + Chr1:83593896-83593915 MsG0180004852.01.T01:CDS 60.0%
GCTCCAGCCACTGCTTGTAC+GGG + Chr1:83597202-83597221 MsG0180004852.01.T01:CDS 60.0%
GGAAGTGGTGGTTCCGGTGA+GGG - Chr1:83593366-83593385 None:intergenic 60.0%
GGCAAGAGGGTCGGATCTTG+TGG + Chr1:83593872-83593891 MsG0180004852.01.T01:CDS 60.0%
TCCGGTGTCCCGACATGTGT+TGG - Chr1:83594466-83594485 None:intergenic 60.0%
TGGAAGTGGTGGTTCCGGTG+AGG - Chr1:83593367-83593386 None:intergenic 60.0%
! CTAGGCTTTCGGGCTAGGTC+AGG + Chr1:83595892-83595911 MsG0180004852.01.T01:intron 60.0%
! TGGGAAGCCGGAGACGGTTT+TGG + Chr1:83593902-83593921 MsG0180004852.01.T01:CDS 60.0%
!! AGTGACGGTGGTGGAAGTGG+TGG - Chr1:83593378-83593397 None:intergenic 60.0%
!! GCAAGTGACGGTGGTGGAAG+TGG - Chr1:83593381-83593400 None:intergenic 60.0%
!! GGTGGTGGAAGTGGTGGTTC+CGG - Chr1:83593372-83593391 None:intergenic 60.0%
CGAAGAGCAGCGGCGGAAGA+AGG - Chr1:83593642-83593661 None:intergenic 65.0%
CGGAGTGCAAGCACCACCGT+TGG + Chr1:83596352-83596371 MsG0180004852.01.T01:intron 65.0%
CTGGCTTCCCATCCTGCACG+AGG - Chr1:83594967-83594986 None:intergenic 65.0%
GCACCCGTACAAGCAGTGGC+TGG - Chr1:83597208-83597227 None:intergenic 65.0%
GCGGCGGAAGAAGGGTCAGT+AGG - Chr1:83593633-83593652 None:intergenic 65.0%
GGCGGTTCTCCGAAGAGCAG+CGG - Chr1:83593652-83593671 None:intergenic 65.0%
GGTTCTCCGAAGAGCAGCGG+CGG - Chr1:83593649-83593668 None:intergenic 65.0%
! ACATCTGGGAGCGCACCTGC+TGG - Chr1:83595200-83595219 None:intergenic 65.0%
! GTGGTTCCGGTGAGGGTGTG+AGG - Chr1:83593359-83593378 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 83593243 83597750 83593243 ID=MsG0180004852.01;Name=MsG0180004852.01
Chr1 mRNA 83593243 83597750 83593243 ID=MsG0180004852.01.T01;Parent=MsG0180004852.01;Name=MsG0180004852.01.T01;_AED=0.30;_eAED=0.30;_QI=69|0.5|1|1|1|1|3|513|424
Chr1 exon 83593243 83594274 83593243 ID=MsG0180004852.01.T01:exon:8970;Parent=MsG0180004852.01.T01
Chr1 exon 83594974 83595203 83594974 ID=MsG0180004852.01.T01:exon:8971;Parent=MsG0180004852.01.T01
Chr1 exon 83597156 83597750 83597156 ID=MsG0180004852.01.T01:exon:8972;Parent=MsG0180004852.01.T01
Chr1 five_prime_UTR 83593243 83593311 83593243 ID=MsG0180004852.01.T01:five_prime_utr;Parent=MsG0180004852.01.T01
Chr1 CDS 83593312 83594274 83593312 ID=MsG0180004852.01.T01:cds;Parent=MsG0180004852.01.T01
Chr1 CDS 83594974 83595203 83594974 ID=MsG0180004852.01.T01:cds;Parent=MsG0180004852.01.T01
Chr1 CDS 83597156 83597237 83597156 ID=MsG0180004852.01.T01:cds;Parent=MsG0180004852.01.T01
Chr1 three_prime_UTR 83597238 83597750 83597238 ID=MsG0180004852.01.T01:three_prime_utr;Parent=MsG0180004852.01.T01
Gene Sequence

>MsG0180004852.01.T01

ATGGAACCCAACAACCAAACACCACCAGAGAAAGAGAATCTCAACCTCACACCCTCACCGGAACCACCACTTCCACCACCGTCACTTGCTTCTCTCTCCCTTTCTCTCTCCTCTCTCCTCCCTTTATTCCAACCCAAAATCCCATCTTTACTATCACCACCACCACCCAATAAGCTTAAAGTACCAACCCAAGCTTCATCACTCACTCATCTTTCACTTTCCACCAAAACCCATTCTTCCCCTTCCAACAAAACCTTCAAAAAATCTTCTTTTTCAGCAAACCCTCTCAAATCACCACTCTCCTTAATCCCTCACCGTCCTACTGACCCTTCTTCCGCCGCTGCTCTTCGGAGAACCGCCATTGTTTGGTTCCGTAATGATCTTCGTGTTCATGATAATGAAGCTTTGAACACTGCAAATAATGAGTCCGTTTCTGTTTTACCTGTTTATTGTTTTGATCCTGCTGATTATGGGAAATCTTCATCTGGGTTTGATAAAACAGGTCCTTATCGTGCTAGTTTTTTGATTGAATCGGTTTCGGATCTTAGGAAGAATCTTAAGGCAAGAGGGTCGGATCTTGTGGTGAGAGTTGGGAAGCCGGAGACGGTTTTGGTTGAATTGGCGAAGGAAATTGGGGCGGATGCTGTGTATTGTCATAGAGAGGTTTCTCATGATGAGGTGAAGATGGAGGAGAAGATTGAAGGGAAGATGAAAGAGGAGAATGTGGAGGTGAAGTGTTTTTGGGGAAGTACTTTGTATCACGTTGAGGATTTGCCGTTTAGTTTGGAGGATATGCCTTCAAATTATGGTGGTTTTAGAGACAGAGTTCAGAAATTGGAGATAAGGAAAACCATTGAGGCTGTGGATCAACTTAAGGGTCTTCCTTCTCGTGGTGATGTTCAGCTTGGTGATATTCCTACTTTGATGGACCTTGGTCTTAATCCATCTGCCACAATGTCACAGGATGGGAAGCCAGTGTCTAATTCTTCCATGACAGGAGGGGAGACTGAAGCACTACAGAGGCTTAAAAGATTTGCGGCTGAGTGTGAAGCTCAACCAAACAAGGGGTTTAAGGATGGGGCACAAGATAGTATATATGGTGCCAACTTTTCATGCAAAATTTCTCCATGGTTGGCAATGGGATGCCTCTCCCCCCGCGTAATGTTTGATGAGCTGAAGAAAACTGCCAGCAGGTTTATTACCAAAAAATATAGTTCTACTAAGAAACAACTGGAAGCTGCTCCAGCCACTGCTTGTACGGGTGCGCTTGCCTAA

Protein sequence

>MsG0180004852.01.T01

MEPNNQTPPEKENLNLTPSPEPPLPPPSLASLSLSLSSLLPLFQPKIPSLLSPPPPNKLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSANPLKSPLSLIPHRPTDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESVSVLPVYCFDPADYGKSSSGFDKTGPYRASFLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKMKEENVEVKCFWGSTLYHVEDLPFSLEDMPSNYGGFRDRVQKLEIRKTIEAVDQLKGLPSRGDVQLGDIPTLMDLGLNPSATMSQDGKPVSNSSMTGGETEALQRLKRFAAECEAQPNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRVMFDELKKTASRFITKKYSSTKKQLEAAPATACTGALA*