AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021856.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021856.01.T01 MTR_4g077900 85.176 425 7 2 86 454 1 425 0.0 713
MsG0480021856.01.T01 MTR_5g027480 70.414 507 88 4 4 454 2 502 0.0 702
MsG0480021856.01.T01 MTR_5g027500 69.157 522 88 5 4 457 2 518 0.0 680
MsG0480021856.01.T01 MTR_8g039720 38.462 494 237 6 26 453 17 509 1.36e-108 334
MsG0480021856.01.T01 MTR_1g026310 38.115 488 243 5 26 454 20 507 3.30e-106 328
MsG0480021856.01.T01 MTR_4g057730 36.515 482 242 7 31 452 10 487 1.53e-90 287
MsG0480021856.01.T01 MTR_4g057730 37.363 455 244 6 31 448 10 460 3.19e-89 281
MsG0480021856.01.T01 MTR_1g090737 37.120 493 236 11 26 452 27 511 8.18e-89 283
MsG0480021856.01.T01 MTR_4g057730 38.009 442 233 6 31 435 10 447 1.11e-88 279
MsG0480021856.01.T01 MTR_2g095510 34.990 483 245 8 31 452 10 484 9.22e-85 272
MsG0480021856.01.T01 MTR_3g088870 36.585 451 212 10 64 453 67 504 2.45e-84 271
MsG0480021856.01.T01 MTR_3g088880 35.635 449 216 8 64 453 68 502 2.21e-83 269
MsG0480021856.01.T01 MTR_2g095510 36.117 443 237 7 31 435 10 444 4.19e-83 265
MsG0480021856.01.T01 MTR_1g063120 33.533 501 258 10 24 454 4 499 3.38e-80 260
MsG0480021856.01.T01 MTR_1g063110 33.671 493 260 8 24 452 4 493 5.91e-80 259
MsG0480021856.01.T01 MTR_1g026470 36.649 382 206 4 26 371 20 401 4.54e-72 234
MsG0480021856.01.T01 MTR_1g026430 36.649 382 206 4 26 371 20 401 9.84e-72 234
MsG0480021856.01.T01 MTR_2g105570 34.735 452 230 8 64 452 44 493 1.98e-69 232
MsG0480021856.01.T01 MTR_1g073180 33.333 450 228 10 60 453 69 502 7.01e-65 219
MsG0480021856.01.T01 MTR_1g073180 33.036 448 222 10 65 453 52 480 8.59e-65 219
MsG0480021856.01.T01 MTR_4g005750 33.333 477 249 11 36 452 19 486 2.49e-59 205
MsG0480021856.01.T01 MTR_3g460770 28.953 487 276 10 26 451 8 485 1.85e-58 202
MsG0480021856.01.T01 MTR_5g007640 32.889 450 237 8 64 452 87 532 5.74e-58 202
MsG0480021856.01.T01 MTR_4g128337 32.301 452 236 11 64 452 49 493 1.57e-57 200
MsG0480021856.01.T01 MTR_1g026350 41.791 134 78 0 26 159 20 153 2.42e-28 111
MsG0480021856.01.T01 MTR_3g035130 29.803 406 214 16 74 430 32 415 3.79e-28 117
MsG0480021856.01.T01 MTR_3g035130 29.557 406 215 16 74 430 32 415 4.42e-28 117
MsG0480021856.01.T01 MTR_0803s0020 28.434 415 209 17 76 431 263 648 3.64e-25 110
MsG0480021856.01.T01 MTR_5g076240 25.813 492 268 16 41 450 11 487 4.97e-21 96.7
MsG0480021856.01.T01 MTR_0161s0050 30.088 226 133 6 220 430 232 447 8.17e-21 96.3
MsG0480021856.01.T01 MTR_3g064420 25.175 429 236 14 70 430 36 447 9.50e-20 92.8
MsG0480021856.01.T01 MTR_1569s0010 23.678 435 263 12 74 445 22 450 1.73e-19 92.0
MsG0480021856.01.T01 MTR_2g030240 24.711 433 247 11 77 445 31 448 7.21e-18 87.0
MsG0480021856.01.T01 MTR_1g104810 22.772 505 282 13 27 431 55 551 2.51e-17 85.5
MsG0480021856.01.T01 MTR_5g076200 29.646 226 134 7 220 430 230 445 4.32e-17 84.7
MsG0480021856.01.T01 MTR_1g030290 34.320 169 99 6 301 462 427 590 1.53e-16 83.2
MsG0480021856.01.T01 MTR_3g087980 36.986 146 82 5 295 433 419 561 2.48e-16 82.4
MsG0480021856.01.T01 MTR_1g104810 25.348 359 186 10 146 431 135 484 5.67e-16 81.3
MsG0480021856.01.T01 MTR_3g084450 35.135 148 80 4 320 456 265 407 1.37e-14 76.6
MsG0480021856.01.T01 MTR_3g084470 46.237 93 46 2 320 411 469 558 2.60e-14 76.3
MsG0480021856.01.T01 MTR_3g084450 35.135 148 80 4 320 456 473 615 2.71e-14 76.3
MsG0480021856.01.T01 MTR_8g083170 37.313 134 68 4 278 411 448 565 3.05e-14 75.9
MsG0480021856.01.T01 MTR_4g011790 26.596 282 157 8 196 431 217 494 4.27e-14 75.5
MsG0480021856.01.T01 MTR_4g011790 26.596 282 157 8 196 431 217 494 5.56e-14 74.7
MsG0480021856.01.T01 MTR_3g082660 34.694 147 86 5 294 433 452 595 1.06e-13 74.3
MsG0480021856.01.T01 MTR_2g030240 25.342 292 175 7 182 445 78 354 1.51e-13 73.2
MsG0480021856.01.T01 MTR_4g013210 27.148 291 156 10 192 431 52 337 2.17e-13 72.4
MsG0480021856.01.T01 MTR_4g013210 27.148 291 156 10 192 431 204 489 2.76e-13 72.8
MsG0480021856.01.T01 MTR_4g011790 25.773 291 157 10 196 431 217 503 4.80e-12 68.9
MsG0480021856.01.T01 MTR_4g013210 25.939 293 190 10 192 468 204 485 1.63e-11 67.0
MsG0480021856.01.T01 MTR_4g057755 41.270 63 37 0 386 448 46 108 4.67e-11 60.8
MsG0480021856.01.T01 MTR_4g013210 27.734 256 158 10 192 431 52 296 6.97e-11 64.7
MsG0480021856.01.T01 MTR_4g013210 27.734 256 158 10 192 431 204 448 8.79e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021856.01.T01 AT4G19010 50.196 510 192 6 3 453 2 508 2.09e-167 485
MsG0480021856.01.T01 AT1G20510 37.214 481 249 3 26 453 10 490 1.48e-109 336
MsG0480021856.01.T01 AT1G20510 38.479 447 245 2 26 442 10 456 5.43e-108 330
MsG0480021856.01.T01 AT1G20510 38.864 440 239 2 26 435 10 449 1.28e-107 328
MsG0480021856.01.T01 AT1G20500 36.382 492 247 8 21 453 12 496 3.79e-100 312
MsG0480021856.01.T01 AT1G20480 35.656 488 253 8 26 454 27 512 2.12e-97 305
MsG0480021856.01.T01 AT4G05160 35.934 487 244 7 29 452 8 489 4.84e-93 293
MsG0480021856.01.T01 AT5G38120 34.560 489 250 8 26 453 17 496 2.95e-90 285
MsG0480021856.01.T01 AT5G38120 34.560 489 250 8 26 453 17 496 1.14e-89 285
MsG0480021856.01.T01 AT5G63380 34.205 497 249 8 26 453 17 504 1.17e-89 285
MsG0480021856.01.T01 AT5G38120 36.087 460 246 8 21 442 13 462 2.11e-89 282
MsG0480021856.01.T01 AT5G38120 36.087 460 246 8 21 442 13 462 2.11e-89 282
MsG0480021856.01.T01 AT1G20490 37.589 423 223 8 21 407 12 429 1.00e-85 271
MsG0480021856.01.T01 AT1G20490 37.589 423 223 8 21 407 12 429 1.00e-85 271
MsG0480021856.01.T01 AT3G21240 33.398 512 258 13 11 452 1 499 1.11e-69 233
MsG0480021856.01.T01 AT3G21240 33.820 479 257 12 11 442 1 466 6.99e-67 224
MsG0480021856.01.T01 AT3G21240 33.820 479 257 12 11 442 1 466 6.99e-67 224
MsG0480021856.01.T01 AT1G51680 34.505 455 228 7 64 452 56 506 3.49e-63 215
MsG0480021856.01.T01 AT1G51680 34.505 455 228 7 64 452 56 506 7.86e-63 214
MsG0480021856.01.T01 AT1G65060 32.860 493 257 11 21 452 30 509 1.63e-61 211
MsG0480021856.01.T01 AT3G21230 32.677 508 270 9 10 452 13 513 1.54e-60 208
MsG0480021856.01.T01 AT1G51680 34.834 422 228 6 64 442 56 473 1.56e-60 207
MsG0480021856.01.T01 AT3G21230 32.677 508 270 9 10 452 13 513 2.08e-60 208
MsG0480021856.01.T01 AT1G65060 33.626 455 251 10 21 437 30 471 9.45e-60 205
MsG0480021856.01.T01 AT3G21230 33.263 475 268 8 10 442 13 480 4.37e-59 203
MsG0480021856.01.T01 AT1G62940 30.735 449 244 8 63 451 43 484 6.89e-53 187
MsG0480021856.01.T01 AT3G21230 30.641 421 243 8 10 388 13 426 2.17e-36 140
MsG0480021856.01.T01 AT3G48990 26.923 390 248 12 73 430 30 414 4.76e-25 108
MsG0480021856.01.T01 AT5G16370 27.407 405 220 16 86 430 53 443 2.04e-22 100
MsG0480021856.01.T01 AT5G16340 27.007 411 214 16 86 430 53 443 3.62e-20 94.0
MsG0480021856.01.T01 AT3G16910 31.466 232 129 7 218 430 238 458 1.90e-19 92.0
MsG0480021856.01.T01 AT1G21530 30.531 226 133 6 220 430 227 443 2.99e-19 91.3
MsG0480021856.01.T01 AT5G27600 24.600 500 279 15 27 431 58 554 3.15e-17 85.5
MsG0480021856.01.T01 AT1G77590 36.735 147 83 5 294 433 270 413 9.02e-16 80.5
MsG0480021856.01.T01 AT1G77590 36.735 147 83 5 294 433 416 559 1.24e-15 80.5
MsG0480021856.01.T01 AT3G05970 26.537 309 147 10 197 431 252 554 6.81e-14 74.7
MsG0480021856.01.T01 AT3G23790 37.705 122 62 3 320 430 474 592 8.72e-14 74.7

Find 135 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTCTGCTTTACACAAAA+TGG 0.138296 4:+65250719 MsG0480021856.01.T01:CDS
GCTGGTATATTGTATTCTTC+TGG 0.174054 4:+65251083 MsG0480021856.01.T01:CDS
ACAGGATAGTAAATTGAATT+TGG 0.180607 4:-65250777 None:intergenic
CTCTTGGCTGTTCTGTATTT+AGG 0.185255 4:+65250804 MsG0480021856.01.T01:CDS
GCCCTTATTGATTCTTCATC+TGG 0.217618 4:+65250651 MsG0480021856.01.T01:CDS
TTCCCCAATTTCTTCATCTT+TGG 0.236990 4:-65253294 None:intergenic
GTTGAGTGATCATGTTGTTT+TGG 0.245364 4:-65250497 None:intergenic
CGCCATGTATTGTCTTTCTT+TGG 0.245550 4:-65253657 None:intergenic
TTGACATTGACGAGGTTATC+AGG 0.253484 4:+65251315 MsG0480021856.01.T01:CDS
AGTGCCAAAGATGAAGAAAT+TGG 0.264076 4:+65253290 MsG0480021856.01.T01:intron
TTATCAAATACAAGGATTTC+AGG 0.279152 4:+65252958 MsG0480021856.01.T01:CDS
TTTCACAACTATTCGTCAAT+AGG 0.295826 4:+65252147 MsG0480021856.01.T01:CDS
GGGTCAGTTGGAAGGTTTCT+AGG 0.297530 4:-65250576 None:intergenic
ATGAAGGCAAAGGGTGTTAA+TGG 0.303488 4:+65251401 MsG0480021856.01.T01:CDS
CAGGCAGCTGCGGTGAGCTT+TGG 0.328932 4:+65252232 MsG0480021856.01.T01:CDS
CAAAGCTCACCGCAGCTGCC+TGG 0.332403 4:-65252231 None:intergenic
TTGCCAATGTTTCATGTGTA+TGG 0.342668 4:+65251230 MsG0480021856.01.T01:CDS
AGTCCACCAGTTTCATGTTA+TGG 0.343233 4:-65253685 None:intergenic
AATGTGCAGAATAGAAATTT+TGG 0.344789 4:-65253782 None:intergenic
CTGGTATATTGTATTCTTCT+GGG 0.346881 4:+65251084 MsG0480021856.01.T01:CDS
ACCCAGATGAAGAATCAATA+AGG 0.350199 4:-65250653 None:intergenic
AGCAGTGCCTGAGTTGCTTT+CGG 0.356544 4:-65253586 None:intergenic
TTCTTACCTCTCATAATAGA+AGG 0.374837 4:-65252264 None:intergenic
TTCACAACTATTCGTCAATA+GGG 0.376437 4:+65252148 MsG0480021856.01.T01:CDS
ACCTGTATAAAATCAACGTT+AGG 0.379226 4:-65251509 None:intergenic
TGTTGGTGAAATTCGTAAAC+AGG 0.387052 4:+65250860 MsG0480021856.01.T01:CDS
AAAGCTCACCGCAGCTGCCT+GGG 0.391998 4:-65252230 None:intergenic
TTACTATCCTGTTATACTCT+TGG 0.392695 4:+65250788 MsG0480021856.01.T01:CDS
AGAACAGCCAAGAGTATAAC+AGG 0.393213 4:-65250795 None:intergenic
GTGCCAAAGATGAAGAAATT+GGG 0.397388 4:+65253291 MsG0480021856.01.T01:intron
ACCTTCCGGACCTTCTTGTA+TGG 0.403187 4:-65253518 None:intergenic
TGCTGCGGGATTATTGTCGT+TGG 0.410245 4:+65251265 MsG0480021856.01.T01:CDS
TGTTGTTCCACCGATGTTGT+CGG 0.411176 4:+65251370 MsG0480021856.01.T01:CDS
AAGGAAACAATGTCAAGAAA+AGG 0.413052 4:-65250597 None:intergenic
CCCTTATTGATTCTTCATCT+GGG 0.414327 4:+65250652 MsG0480021856.01.T01:CDS
TGCTTGAGTTCTAAACTCTA+AGG 0.416696 4:+65253605 MsG0480021856.01.T01:exon
TCAGGATGGATATTTACATT+TGG 0.418131 4:+65252917 MsG0480021856.01.T01:CDS
GTCAAGAAACTAGAGCTATT+AGG 0.418468 4:+65250927 MsG0480021856.01.T01:CDS
TCAAAGGGTAGTTATTAAAC+AGG 0.419883 4:+65251052 MsG0480021856.01.T01:CDS
CTATTCGTCAATAGGGTTGT+TGG 0.424322 4:+65252155 MsG0480021856.01.T01:CDS
GACAACATCGGTGGAACAAC+AGG 0.427365 4:-65251368 None:intergenic
TGTTTAATAACTACCCTTTG+AGG 0.430394 4:-65251050 None:intergenic
GGTTTATCGCTCTTTGCTGC+GGG 0.430597 4:+65251251 MsG0480021856.01.T01:CDS
TAACAACTTTGAGTAAGAAA+TGG 0.436153 4:-65250679 None:intergenic
CAGAAAATGAGAAGGATTTG+AGG 0.445513 4:+65250976 MsG0480021856.01.T01:CDS
CTCAACACCCTCACCCTCAT+TGG 0.448612 4:+65250514 MsG0480021856.01.T01:CDS
TGCGGTGAGCTTTGGTTGAG+AGG 0.454034 4:+65252240 MsG0480021856.01.T01:CDS
GCTTCTGCTTTACACAAAAT+GGG 0.455667 4:+65250720 MsG0480021856.01.T01:CDS
GGGTTACCATAACATGAAAC+TGG 0.457748 4:+65253679 MsG0480021856.01.T01:three_prime_UTR
GCTGCGGGATTATTGTCGTT+GGG 0.458574 4:+65251266 MsG0480021856.01.T01:CDS
TTGTATTCTTCTGGGACTAC+AGG 0.459563 4:+65251092 MsG0480021856.01.T01:CDS
TGTCGGTGATGAACACCTTC+CGG 0.460828 4:-65253532 None:intergenic
CCCAGATGAAGAATCAATAA+GGG 0.467167 4:-65250652 None:intergenic
AATCAAATTTACCATAAAGA+AGG 0.470429 4:-65251025 None:intergenic
ATTGAAAAGTATGACACAAC+AGG 0.473687 4:-65254014 None:intergenic
TAAATTTGATTTGCCTCAAA+GGG 0.485047 4:+65251037 MsG0480021856.01.T01:CDS
GGTGCAGCGCCTTTGAGCAT+AGG 0.486009 4:+65251458 MsG0480021856.01.T01:CDS
GTAAATTTGATTTGCCTCAA+AGG 0.487083 4:+65251036 MsG0480021856.01.T01:CDS
ACATAATCGACCACATGCTT+CGG 0.487322 4:-65253364 None:intergenic
ATTTCACCAACACTACTAAG+AGG 0.489624 4:-65250849 None:intergenic
CGGAGACCTTGGTATCTTGT+CGG 0.489928 4:-65253549 None:intergenic
AGTGGCATTTGTTGTCAAGA+AGG 0.496940 4:+65253322 MsG0480021856.01.T01:CDS
TTGAGCATAGGAGTTATTAG+TGG 0.499006 4:+65251470 MsG0480021856.01.T01:CDS
CACAAAATGGGTGTTTCACA+AGG 0.502968 4:+65250732 MsG0480021856.01.T01:CDS
TTGAATCCTCTTAGTAGTGT+TGG 0.505325 4:+65250843 MsG0480021856.01.T01:CDS
ATCTTCCCAGTCGGAGACCT+TGG 0.507080 4:-65253560 None:intergenic
TGGTTTATCGCTCTTTGCTG+CGG 0.507976 4:+65251250 MsG0480021856.01.T01:CDS
ATTTCTCTAGTGCATTTACA+AGG 0.509552 4:-65253913 None:intergenic
TAAGTTGCAGAGTTTGAGAC+AGG 0.511530 4:+65251427 MsG0480021856.01.T01:CDS
TTGCTCCATACAAGAAGGTC+CGG 0.515213 4:+65253513 MsG0480021856.01.T01:CDS
CGGAGGCAAAAGTGGTAGAC+TGG 0.515561 4:+65252187 MsG0480021856.01.T01:CDS
AAAGATGGTTGGCTACATAC+AGG 0.515947 4:+65252876 MsG0480021856.01.T01:CDS
GCGGTGAGCTTTGGTTGAGA+GGG 0.517348 4:+65252241 MsG0480021856.01.T01:CDS
TTCTTGACAACAAATGCCAC+TGG 0.517709 4:-65253320 None:intergenic
TCTCTTACTATAACTGACTA+AGG 0.519073 4:-65253889 None:intergenic
AGGAAACAATGTCAAGAAAA+GGG 0.521407 4:-65250596 None:intergenic
AAGCTCACCGCAGCTGCCTG+GGG 0.523366 4:-65252229 None:intergenic
ATGTCAAGAAAAGGGTCAGT+TGG 0.533509 4:-65250588 None:intergenic
AAACCATACACATGAAACAT+TGG 0.533547 4:-65251233 None:intergenic
TCCAAACACGGAGGCAAAAG+TGG 0.534472 4:+65252179 MsG0480021856.01.T01:CDS
GAAGCCATGGATTTGACTAA+AGG 0.537715 4:-65250702 None:intergenic
ATATCAACAATTGATAAAGA+TGG 0.537763 4:+65252861 MsG0480021856.01.T01:CDS
GTTACCTTTAGTCAAATCCA+TGG 0.539728 4:+65250698 MsG0480021856.01.T01:CDS
AGATCCTCCGAAAGCAACTC+AGG 0.540928 4:+65253579 MsG0480021856.01.T01:CDS
AAAGTGGTAGACTGGAACAA+TGG 0.541163 4:+65252195 MsG0480021856.01.T01:CDS
CTCAGGATACTTGAATAATG+AGG 0.541417 4:+65252830 MsG0480021856.01.T01:intron
CAAGAAAAGGGTCAGTTGGA+AGG 0.544290 4:-65250584 None:intergenic
GAAAGACATTATCAAATACA+AGG 0.547955 4:+65252950 MsG0480021856.01.T01:CDS
AATCAACGTTAGGGAAAGCA+TGG 0.550452 4:-65251499 None:intergenic
GGTCGATTATGTTGCTGAGC+AGG 0.550976 4:+65253375 MsG0480021856.01.T01:CDS
TTTGTGTAAAGCAGAAGCCA+TGG 0.560434 4:-65250715 None:intergenic
CCTGTATAAAATCAACGTTA+GGG 0.562718 4:-65251508 None:intergenic
TGACATTGACGAGGTTATCA+GGG 0.564262 4:+65251316 MsG0480021856.01.T01:CDS
ACACTACTAAGAGGATTCAA+TGG 0.565007 4:-65250840 None:intergenic
TACCAAAGAAAGACAATACA+TGG 0.567298 4:+65253655 MsG0480021856.01.T01:three_prime_UTR
CAACAATTGATAAAGATGGT+TGG 0.569594 4:+65252865 MsG0480021856.01.T01:CDS
GGCATTGACAATGAAGGCAA+AGG 0.569984 4:+65251391 MsG0480021856.01.T01:CDS
GCATTGACAATGAAGGCAAA+GGG 0.570042 4:+65251392 MsG0480021856.01.T01:CDS
ATTTGATAATGTCTTTCAAG+CGG 0.579224 4:-65252944 None:intergenic
ATTGTCAATGCCGACAACAT+CGG 0.579863 4:-65251380 None:intergenic
AAAGAAAGACAATACATGGC+GGG 0.585051 4:+65253659 MsG0480021856.01.T01:three_prime_UTR
TGCTGTGCCAGAAAATGAGA+AGG 0.586565 4:+65250968 MsG0480021856.01.T01:CDS
AGTTTGAGACAGGTCTCTTG+CGG 0.592614 4:+65251437 MsG0480021856.01.T01:CDS
GATGAATACCAATGAGGGTG+AGG 0.592922 4:-65250522 None:intergenic
TGCCAAAGATGAAGAAATTG+GGG 0.593341 4:+65253292 MsG0480021856.01.T01:CDS
GTTGTCGGCATTGACAATGA+AGG 0.595731 4:+65251385 MsG0480021856.01.T01:CDS
GATCTACTGTCATTGTAATG+AGG 0.600626 4:+65251288 MsG0480021856.01.T01:CDS
AAGATACCAAGGTCTCCGAC+TGG 0.604082 4:+65253554 MsG0480021856.01.T01:CDS
CTAATAACTCCTATGCTCAA+AGG 0.604731 4:-65251467 None:intergenic
ATTAAACAGGAAGATACTGC+TGG 0.608838 4:+65251065 MsG0480021856.01.T01:CDS
CGTAAACAGGTTCAAGAGTG+TGG 0.611754 4:+65250873 MsG0480021856.01.T01:CDS
AGGGTTGTTGGCTCCAAACA+CGG 0.614077 4:+65252167 MsG0480021856.01.T01:CDS
GTCAATGCCGACAACATCGG+TGG 0.615987 4:-65251377 None:intergenic
TTTCGGAGGATCTTCCCAGT+CGG 0.617027 4:-65253569 None:intergenic
AGAGGGCCTTCTATTATGAG+AGG 0.618979 4:+65252258 MsG0480021856.01.T01:CDS
AGATACCAAGGTCTCCGACT+GGG 0.620788 4:+65253555 MsG0480021856.01.T01:CDS
GCAGGTTGCTCCATACAAGA+AGG 0.622353 4:+65253508 MsG0480021856.01.T01:intron
TCGACTGCAGTGGGAACACG+TGG 0.624008 4:+65252108 MsG0480021856.01.T01:CDS
TTACCATAACATGAAACTGG+TGG 0.637363 4:+65253682 MsG0480021856.01.T01:three_prime_UTR
AGCTCACCGCAGCTGCCTGG+GGG 0.641341 4:-65252228 None:intergenic
AGGGCTAAAACCCCATCATG+AGG 0.644178 4:-65250633 None:intergenic
GGCATTTGTTGTCAAGAAGG+TGG 0.645273 4:+65253325 MsG0480021856.01.T01:CDS
AGTGCCTGAGTTGCTTTCGG+AGG 0.646420 4:-65253583 None:intergenic
ATTTGTTGTCAAGAAGGTGG+TGG 0.648145 4:+65253328 MsG0480021856.01.T01:CDS
ATGACTGAGTCGACTGCAGT+GGG 0.649133 4:+65252099 MsG0480021856.01.T01:CDS
TCCATACAAGAAGGTCCGGA+AGG 0.659172 4:+65253517 MsG0480021856.01.T01:CDS
TGTACTTTCTCCGAAGCATG+TGG 0.668913 4:+65253354 MsG0480021856.01.T01:CDS
AATGACTGAGTCGACTGCAG+TGG 0.680151 4:+65252098 MsG0480021856.01.T01:CDS
AAGAAACTAGAGCTATTAGG+TGG 0.680245 4:+65250930 MsG0480021856.01.T01:CDS
GAGGAAATTTGACATTGACG+AGG 0.683873 4:+65251307 MsG0480021856.01.T01:CDS
ATGAATACCAATGAGGGTGA+GGG 0.691317 4:-65250521 None:intergenic
AGAAATTGGGGAAATTCCAG+TGG 0.696561 4:+65253304 MsG0480021856.01.T01:CDS
TCATCACCGACAAGATACCA+AGG 0.747173 4:+65253543 MsG0480021856.01.T01:CDS
CAAAGAAAGACAATACATGG+CGG 0.750110 4:+65253658 MsG0480021856.01.T01:three_prime_UTR
GTTGTTGGCTCCAAACACGG+AGG 0.795141 4:+65252170 MsG0480021856.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAGAAAAAAATAAAATAA+AGG - Chr4:65253487-65253506 None:intergenic 10.0%
!! GAAGAAAAAAATAAAATAAA+GGG - Chr4:65253486-65253505 None:intergenic 10.0%
!!! TTTATTTTATTTTTTTCTTC+TGG + Chr4:65253486-65253505 MsG0480021856.01.T01:intron 10.0%
!! TTTATTAACATTTACTGATA+AGG - Chr4:65252592-65252611 None:intergenic 15.0%
!!! GTTTGATTAACAATTTTAAT+TGG - Chr4:65252796-65252815 None:intergenic 15.0%
!! AATCAAATTTACCATAAAGA+AGG - Chr4:65251028-65251047 None:intergenic 20.0%
!! AGATATTAAAAAGTGAAACA+CGG + Chr4:65252304-65252323 MsG0480021856.01.T01:intron 20.0%
!! ATATAGAGCAAATATAGTAA+AGG - Chr4:65252421-65252440 None:intergenic 20.0%
!! ATATCAACAATTGATAAAGA+TGG + Chr4:65252861-65252880 MsG0480021856.01.T01:CDS 20.0%
!! TATAGAGCAAATATAGTAAA+GGG - Chr4:65252420-65252439 None:intergenic 20.0%
!! TTAATAGCAACTGTTATATA+GGG + Chr4:65251694-65251713 MsG0480021856.01.T01:intron 20.0%
!! TTTAATAGCAACTGTTATAT+AGG + Chr4:65251693-65251712 MsG0480021856.01.T01:intron 20.0%
!!! AGATATTGTTTATTTTGATC+AGG + Chr4:65252899-65252918 MsG0480021856.01.T01:CDS 20.0%
!!! AGTTATTTCTTTGTTATTGT+TGG + Chr4:65251612-65251631 MsG0480021856.01.T01:intron 20.0%
!!! AGTTTTTTTAACCTTCTTTA+TGG + Chr4:65251014-65251033 MsG0480021856.01.T01:CDS 20.0%
!!! CAAATAAAGTTCAACTTTTA+TGG - Chr4:65252010-65252029 None:intergenic 20.0%
! AAACTGAAGTAAATTTCTCT+TGG + Chr4:65252678-65252697 MsG0480021856.01.T01:intron 25.0%
! AAATAAGCTGAAAAGAACTA+AGG + Chr4:65251869-65251888 MsG0480021856.01.T01:intron 25.0%
! AACTAACATGATATTTCTCA+AGG - Chr4:65252472-65252491 None:intergenic 25.0%
! AATAAATTGTTTAGCCAAAC+AGG - Chr4:65251720-65251739 None:intergenic 25.0%
! ACAGGATAGTAAATTGAATT+TGG - Chr4:65250780-65250799 None:intergenic 25.0%
! ATAGAGCAAATATAGTAAAG+GGG - Chr4:65252419-65252438 None:intergenic 25.0%
! ATATAAAGGTCTTGATTCAA+TGG + Chr4:65252332-65252351 MsG0480021856.01.T01:intron 25.0%
! ATTAAGGCTATTCTATTCAA+AGG - Chr4:65251541-65251560 None:intergenic 25.0%
! CTCATAGAAATCTAATTCTA+TGG + Chr4:65251138-65251157 MsG0480021856.01.T01:intron 25.0%
! GAAAGACATTATCAAATACA+AGG + Chr4:65252950-65252969 MsG0480021856.01.T01:CDS 25.0%
! TAACAACTTTGAGTAAGAAA+TGG - Chr4:65250682-65250701 None:intergenic 25.0%
! TTACTTGCATTCTCTAATTA+AGG - Chr4:65251557-65251576 None:intergenic 25.0%
! TTATAATCAAATGTCCAAAG+AGG - Chr4:65253241-65253260 None:intergenic 25.0%
! TTATCAAATACAAGGATTTC+AGG + Chr4:65252958-65252977 MsG0480021856.01.T01:CDS 25.0%
!! AATGTGCAGAATAGAAATTT+TGG - Chr4:65253785-65253804 None:intergenic 25.0%
!! ATTTGTTAACGCTTAACTAA+AGG + Chr4:65252439-65252458 MsG0480021856.01.T01:intron 25.0%
!! CATCATGAGTACATTTTTAA+AGG + Chr4:65253727-65253746 MsG0480021856.01.T01:three_prime_UTR 25.0%
!! TGTAAGATTGTTTCCTTTTA+GGG + Chr4:65252069-65252088 MsG0480021856.01.T01:intron 25.0%
!! TTTTTGATGAATACCAATGA+GGG - Chr4:65250530-65250549 None:intergenic 25.0%
!!! ATTGTTTATTTTGATCAGGA+TGG + Chr4:65252903-65252922 MsG0480021856.01.T01:CDS 25.0%
!!! ATTTGATAATGTCTTTCAAG+CGG - Chr4:65252947-65252966 None:intergenic 25.0%
!!! TAAATTTGATTTGCCTCAAA+GGG + Chr4:65251037-65251056 MsG0480021856.01.T01:CDS 25.0%
!!! TTTTATTTTTTTCTTCTGGC+AGG + Chr4:65253490-65253509 MsG0480021856.01.T01:intron 25.0%
AAACCATACACATGAAACAT+TGG - Chr4:65251236-65251255 None:intergenic 30.0%
AACTCTTTCCTTTAATTCTC+AGG + Chr4:65252813-65252832 MsG0480021856.01.T01:intron 30.0%
AAGGAAACAATGTCAAGAAA+AGG - Chr4:65250600-65250619 None:intergenic 30.0%
ACCTGTATAAAATCAACGTT+AGG - Chr4:65251512-65251531 None:intergenic 30.0%
AGGAAACAATGTCAAGAAAA+GGG - Chr4:65250599-65250618 None:intergenic 30.0%
ATGAGGATGTGAAAAAATGA+AGG - Chr4:65250619-65250638 None:intergenic 30.0%
ATTTCTCTAGTGCATTTACA+AGG - Chr4:65253916-65253935 None:intergenic 30.0%
CAACAATTGATAAAGATGGT+TGG + Chr4:65252865-65252884 MsG0480021856.01.T01:CDS 30.0%
CATTGGTATTCATCAAAAAC+TGG + Chr4:65250531-65250550 MsG0480021856.01.T01:CDS 30.0%
CCTGTATAAAATCAACGTTA+GGG - Chr4:65251511-65251530 None:intergenic 30.0%
CTGGTATATTGTATTCTTCT+GGG + Chr4:65251084-65251103 MsG0480021856.01.T01:CDS 30.0%
GAAAAATGACGTAACATTTG+AGG - Chr4:65253264-65253283 None:intergenic 30.0%
GAAACACGGTAGTAATATAA+AGG + Chr4:65252318-65252337 MsG0480021856.01.T01:intron 30.0%
TACCAAAGAAAGACAATACA+TGG + Chr4:65253655-65253674 MsG0480021856.01.T01:three_prime_UTR 30.0%
TAGAAAGTTCAAAAACCAGA+AGG + Chr4:65253836-65253855 MsG0480021856.01.T01:three_prime_UTR 30.0%
TCAAAGGGTAGTTATTAAAC+AGG + Chr4:65251052-65251071 MsG0480021856.01.T01:CDS 30.0%
TCAAGCAATCATATAAACGA+TGG - Chr4:65251584-65251603 None:intergenic 30.0%
TCAAGTATCCTGAGAATTAA+AGG - Chr4:65252824-65252843 None:intergenic 30.0%
TCAGGATGGATATTTACATT+TGG + Chr4:65252917-65252936 MsG0480021856.01.T01:CDS 30.0%
TCTCTTACTATAACTGACTA+AGG - Chr4:65253892-65253911 None:intergenic 30.0%
TGTTTAATAACTACCCTTTG+AGG - Chr4:65251053-65251072 None:intergenic 30.0%
TTACTATCCTGTTATACTCT+TGG + Chr4:65250788-65250807 MsG0480021856.01.T01:CDS 30.0%
TTCACAACTATTCGTCAATA+GGG + Chr4:65252148-65252167 MsG0480021856.01.T01:CDS 30.0%
TTCATATACTTACGCTGTAA+CGG - Chr4:65253152-65253171 None:intergenic 30.0%
TTCTTACCTCTCATAATAGA+AGG - Chr4:65252267-65252286 None:intergenic 30.0%
TTTCACAACTATTCGTCAAT+AGG + Chr4:65252147-65252166 MsG0480021856.01.T01:CDS 30.0%
! CTGTAAGATTGTTTCCTTTT+AGG + Chr4:65252068-65252087 MsG0480021856.01.T01:intron 30.0%
! GTTTTTGATGAATACCAATG+AGG - Chr4:65250531-65250550 None:intergenic 30.0%
!! GATTTCAGGTATCTACTTTT+AGG + Chr4:65252972-65252991 MsG0480021856.01.T01:intron 30.0%
!! GTAAATTTGATTTGCCTCAA+AGG + Chr4:65251036-65251055 MsG0480021856.01.T01:CDS 30.0%
!! TCTAGTTTCTTGACATTTTC+AGG - Chr4:65250921-65250940 None:intergenic 30.0%
!!! AATTGATGGTTTTTTCCTTC+TGG - Chr4:65253854-65253873 None:intergenic 30.0%
!!! ATTGTTTCCTTTTAGGGTTA+TGG + Chr4:65252075-65252094 MsG0480021856.01.T01:intron 30.0%
!!! ATTTTTTCACATCCTCATGA+TGG + Chr4:65250621-65250640 MsG0480021856.01.T01:CDS 30.0%
!!! TTGAGTGATCATGTTGTTTT+GGG - Chr4:65250499-65250518 None:intergenic 30.0%
!!! TTTTTTCACATCCTCATGAT+GGG + Chr4:65250622-65250641 MsG0480021856.01.T01:CDS 30.0%
AAACAGTCTCGCAAAACTTA+TGG + Chr4:65251925-65251944 MsG0480021856.01.T01:intron 35.0%
AAAGAAAGACAATACATGGC+GGG + Chr4:65253659-65253678 MsG0480021856.01.T01:three_prime_UTR 35.0%
AAGAAACTAGAGCTATTAGG+TGG + Chr4:65250930-65250949 MsG0480021856.01.T01:CDS 35.0%
ACACTACTAAGAGGATTCAA+TGG - Chr4:65250843-65250862 None:intergenic 35.0%
ACCCAGATGAAGAATCAATA+AGG - Chr4:65250656-65250675 None:intergenic 35.0%
AGCAAATATAGTAAAGGGGA+GGG - Chr4:65252415-65252434 None:intergenic 35.0%
AGTCATTCCATAACCCTAAA+AGG - Chr4:65252085-65252104 None:intergenic 35.0%
AGTGCCAAAGATGAAGAAAT+TGG + Chr4:65253290-65253309 MsG0480021856.01.T01:intron 35.0%
ATAACTGACTAAGGTGTACA+GGG - Chr4:65253883-65253902 None:intergenic 35.0%
ATAGCGAACAACAACAATCA+AGG + Chr4:65252635-65252654 MsG0480021856.01.T01:intron 35.0%
ATGATATTTCTCAAGGACAC+AGG - Chr4:65252465-65252484 None:intergenic 35.0%
ATTAAACAGGAAGATACTGC+TGG + Chr4:65251065-65251084 MsG0480021856.01.T01:CDS 35.0%
ATTTCACCAACACTACTAAG+AGG - Chr4:65250852-65250871 None:intergenic 35.0%
CAAAGAAAGACAATACATGG+CGG + Chr4:65253658-65253677 MsG0480021856.01.T01:three_prime_UTR 35.0%
CAGAAAATGAGAAGGATTTG+AGG + Chr4:65250976-65250995 MsG0480021856.01.T01:CDS 35.0%
CAGCAAGACAAGAAAAAAGA+AGG - Chr4:65252765-65252784 None:intergenic 35.0%
CCCAGATGAAGAATCAATAA+GGG - Chr4:65250655-65250674 None:intergenic 35.0%
CTAATAACTCCTATGCTCAA+AGG - Chr4:65251470-65251489 None:intergenic 35.0%
CTCAGGATACTTGAATAATG+AGG + Chr4:65252830-65252849 MsG0480021856.01.T01:intron 35.0%
GATCTACTGTCATTGTAATG+AGG + Chr4:65251288-65251307 MsG0480021856.01.T01:CDS 35.0%
GCTGGTATATTGTATTCTTC+TGG + Chr4:65251083-65251102 MsG0480021856.01.T01:CDS 35.0%
GCTTCTGCTTTACACAAAAT+GGG + Chr4:65250720-65250739 MsG0480021856.01.T01:CDS 35.0%
GTCAAGAAACTAGAGCTATT+AGG + Chr4:65250927-65250946 MsG0480021856.01.T01:CDS 35.0%
GTGCCAAAGATGAAGAAATT+GGG + Chr4:65253291-65253310 MsG0480021856.01.T01:intron 35.0%
GTTACCTTTAGTCAAATCCA+TGG + Chr4:65250698-65250717 MsG0480021856.01.T01:CDS 35.0%
TATAACTGACTAAGGTGTAC+AGG - Chr4:65253884-65253903 None:intergenic 35.0%
TCACATCCACAACAAATTCT+AGG + Chr4:65251984-65252003 MsG0480021856.01.T01:intron 35.0%
TGCCAAAGATGAAGAAATTG+GGG + Chr4:65253292-65253311 MsG0480021856.01.T01:CDS 35.0%
TTACCATAACATGAAACTGG+TGG + Chr4:65253682-65253701 MsG0480021856.01.T01:three_prime_UTR 35.0%
TTCCCCAATTTCTTCATCTT+TGG - Chr4:65253297-65253316 None:intergenic 35.0%
TTGAATCCTCTTAGTAGTGT+TGG + Chr4:65250843-65250862 MsG0480021856.01.T01:CDS 35.0%
TTGAGCATAGGAGTTATTAG+TGG + Chr4:65251470-65251489 MsG0480021856.01.T01:CDS 35.0%
TTGCCAATGTTTCATGTGTA+TGG + Chr4:65251230-65251249 MsG0480021856.01.T01:CDS 35.0%
! AGAAAAAAGAAGGTACAGGT+AGG - Chr4:65252755-65252774 None:intergenic 35.0%
! ATAAGTTTTGCGAGACTGTT+TGG - Chr4:65251926-65251945 None:intergenic 35.0%
! CTCAAATCCTTCTCATTTTC+TGG - Chr4:65250978-65250997 None:intergenic 35.0%
! GACAAGAAAAAAGAAGGTAC+AGG - Chr4:65252759-65252778 None:intergenic 35.0%
! GCTGCATTTTCTATAGATTG+CGG - Chr4:65253197-65253216 None:intergenic 35.0%
! TAAGTTTTGCGAGACTGTTT+GGG - Chr4:65251925-65251944 None:intergenic 35.0%
! TGTTGGTGAAATTCGTAAAC+AGG + Chr4:65250860-65250879 MsG0480021856.01.T01:CDS 35.0%
! TTTTTCACATCCTCATGATG+GGG + Chr4:65250623-65250642 MsG0480021856.01.T01:CDS 35.0%
!! AATCTTCTAAAGTGCCTCTT+TGG + Chr4:65253224-65253243 MsG0480021856.01.T01:intron 35.0%
!! AGAGGCACTTTAGAAGATTA+CGG - Chr4:65253223-65253242 None:intergenic 35.0%
!! ATTTTCTGGCACAGCAATAA+TGG - Chr4:65250964-65250983 None:intergenic 35.0%
!! CCCTTATTGATTCTTCATCT+GGG + Chr4:65250652-65250671 MsG0480021856.01.T01:CDS 35.0%
!! GTCGTTTTCATAAGCTATCT+TGG + Chr4:65251835-65251854 MsG0480021856.01.T01:intron 35.0%
!! GTTGAGTGATCATGTTGTTT+TGG - Chr4:65250500-65250519 None:intergenic 35.0%
!! TGCTTGAGTTCTAAACTCTA+AGG + Chr4:65253605-65253624 MsG0480021856.01.T01:exon 35.0%
!! TTATGGCCTAGAATTTGTTG+TGG - Chr4:65251993-65252012 None:intergenic 35.0%
!! TTTTCTGGCACAGCAATAAT+GGG - Chr4:65250963-65250982 None:intergenic 35.0%
!!! AATCAAGGCCTTTTTTCACT+CGG + Chr4:65252650-65252669 MsG0480021856.01.T01:intron 35.0%
!!! CCCTAACGTTGATTTTATAC+AGG + Chr4:65251508-65251527 MsG0480021856.01.T01:CDS 35.0%
AAAGTGGTAGACTGGAACAA+TGG + Chr4:65252195-65252214 MsG0480021856.01.T01:CDS 40.0%
AACAGCTAGAAACACACTCT+TGG - Chr4:65251210-65251229 None:intergenic 40.0%
AATCAACGTTAGGGAAAGCA+TGG - Chr4:65251502-65251521 None:intergenic 40.0%
ACATAATCGACCACATGCTT+CGG - Chr4:65253367-65253386 None:intergenic 40.0%
ACTGTTATATAGGGCCTGTT+TGG + Chr4:65251703-65251722 MsG0480021856.01.T01:intron 40.0%
AGAAATTGGGGAAATTCCAG+TGG + Chr4:65253304-65253323 MsG0480021856.01.T01:CDS 40.0%
AGTCCACCAGTTTCATGTTA+TGG - Chr4:65253688-65253707 None:intergenic 40.0%
ATGAATACCAATGAGGGTGA+GGG - Chr4:65250524-65250543 None:intergenic 40.0%
ATGTCAAGAAAAGGGTCAGT+TGG - Chr4:65250591-65250610 None:intergenic 40.0%
ATTGTCAATGCCGACAACAT+CGG - Chr4:65251383-65251402 None:intergenic 40.0%
CACAAAATGGGTGTTTCACA+AGG + Chr4:65250732-65250751 MsG0480021856.01.T01:CDS 40.0%
CGCCATGTATTGTCTTTCTT+TGG - Chr4:65253660-65253679 None:intergenic 40.0%
CTATTCGTCAATAGGGTTGT+TGG + Chr4:65252155-65252174 MsG0480021856.01.T01:CDS 40.0%
CTCTTGGCTGTTCTGTATTT+AGG + Chr4:65250804-65250823 MsG0480021856.01.T01:CDS 40.0%
GAAGCCATGGATTTGACTAA+AGG - Chr4:65250705-65250724 None:intergenic 40.0%
GAGCAAATATAGTAAAGGGG+AGG - Chr4:65252416-65252435 None:intergenic 40.0%
GAGGAAATTTGACATTGACG+AGG + Chr4:65251307-65251326 MsG0480021856.01.T01:CDS 40.0%
GGCTTCTGCTTTACACAAAA+TGG + Chr4:65250719-65250738 MsG0480021856.01.T01:CDS 40.0%
GGGTTACCATAACATGAAAC+TGG + Chr4:65253679-65253698 MsG0480021856.01.T01:three_prime_UTR 40.0%
GTTGTGGATGTGAACATCAA+TGG - Chr4:65251977-65251996 None:intergenic 40.0%
TACAGGTAGGCTAAGGAATA+AGG - Chr4:65252742-65252761 None:intergenic 40.0%
TGACATTGACGAGGTTATCA+GGG + Chr4:65251316-65251335 MsG0480021856.01.T01:CDS 40.0%
TTCTTGACAACAAATGCCAC+TGG - Chr4:65253323-65253342 None:intergenic 40.0%
TTGACATTGACGAGGTTATC+AGG + Chr4:65251315-65251334 MsG0480021856.01.T01:CDS 40.0%
TTTGTGTAAAGCAGAAGCCA+TGG - Chr4:65250718-65250737 None:intergenic 40.0%
! AAAGATGGTTGGCTACATAC+AGG + Chr4:65252876-65252895 MsG0480021856.01.T01:CDS 40.0%
! AGAACAGCCAAGAGTATAAC+AGG - Chr4:65250798-65250817 None:intergenic 40.0%
! GAGCAGGTTCTTCTTTTGAT+TGG + Chr4:65253391-65253410 MsG0480021856.01.T01:intron 40.0%
! GCACTTTAGAAGATTACGGA+TGG - Chr4:65253219-65253238 None:intergenic 40.0%
! GCATTGACAATGAAGGCAAA+GGG + Chr4:65251392-65251411 MsG0480021856.01.T01:CDS 40.0%
! TAAGTTGCAGAGTTTGAGAC+AGG + Chr4:65251427-65251446 MsG0480021856.01.T01:CDS 40.0%
! TTTTCCCACCGAGTGAAAAA+AGG - Chr4:65252661-65252680 None:intergenic 40.0%
!! AGTGGCATTTGTTGTCAAGA+AGG + Chr4:65253322-65253341 MsG0480021856.01.T01:CDS 40.0%
!! ATGAAGGCAAAGGGTGTTAA+TGG + Chr4:65251401-65251420 MsG0480021856.01.T01:CDS 40.0%
!! ATTTGTTGTCAAGAAGGTGG+TGG + Chr4:65253328-65253347 MsG0480021856.01.T01:CDS 40.0%
!! CTTCATCTTTGGCACTGATA+TGG - Chr4:65253286-65253305 None:intergenic 40.0%
!! GCCCTTATTGATTCTTCATC+TGG + Chr4:65250651-65250670 MsG0480021856.01.T01:CDS 40.0%
!! TTGTATTCTTCTGGGACTAC+AGG + Chr4:65251092-65251111 MsG0480021856.01.T01:CDS 40.0%
!!! AATGGTACTTTTTTACCCCC+AGG + Chr4:65252213-65252232 MsG0480021856.01.T01:CDS 40.0%
AACACAGCTTCTAGATCAGC+AGG - Chr4:65253100-65253119 None:intergenic 45.0%
AGAGGGCCTTCTATTATGAG+AGG + Chr4:65252258-65252277 MsG0480021856.01.T01:CDS 45.0%
CAAGAAAAGGGTCAGTTGGA+AGG - Chr4:65250587-65250606 None:intergenic 45.0%
CGTAAACAGGTTCAAGAGTG+TGG + Chr4:65250873-65250892 MsG0480021856.01.T01:CDS 45.0%
GATGAATACCAATGAGGGTG+AGG - Chr4:65250525-65250544 None:intergenic 45.0%
GGGAGGGAGTCTTGATATAA+AGG - Chr4:65252399-65252418 None:intergenic 45.0%
GTACAGGGCAGAGTAATTGA+TGG - Chr4:65253868-65253887 None:intergenic 45.0%
TCATCACCGACAAGATACCA+AGG + Chr4:65253543-65253562 MsG0480021856.01.T01:CDS 45.0%
TGCTGTGCCAGAAAATGAGA+AGG + Chr4:65250968-65250987 MsG0480021856.01.T01:CDS 45.0%
TGGTTTATCGCTCTTTGCTG+CGG + Chr4:65251250-65251269 MsG0480021856.01.T01:CDS 45.0%
TGTACTTTCTCCGAAGCATG+TGG + Chr4:65253354-65253373 MsG0480021856.01.T01:CDS 45.0%
TGTTGTTCCACCGATGTTGT+CGG + Chr4:65251370-65251389 MsG0480021856.01.T01:CDS 45.0%
TTGCTCCATACAAGAAGGTC+CGG + Chr4:65253513-65253532 MsG0480021856.01.T01:CDS 45.0%
! AAGAAGGTACAGGTAGGCTA+AGG - Chr4:65252749-65252768 None:intergenic 45.0%
! AGTTTGAGACAGGTCTCTTG+CGG + Chr4:65251437-65251456 MsG0480021856.01.T01:CDS 45.0%
!! AAAGGTTTGAGTTGCTGCAG+CGG - Chr4:65252381-65252400 None:intergenic 45.0%
!! GGCATTGACAATGAAGGCAA+AGG + Chr4:65251391-65251410 MsG0480021856.01.T01:CDS 45.0%
!! GGCATTTGTTGTCAAGAAGG+TGG + Chr4:65253325-65253344 MsG0480021856.01.T01:CDS 45.0%
!! GTTGTCGGCATTGACAATGA+AGG + Chr4:65251385-65251404 MsG0480021856.01.T01:CDS 45.0%
!!! AAGGCCTTTTTTCACTCGGT+GGG + Chr4:65252654-65252673 MsG0480021856.01.T01:intron 45.0%
AAGATACCAAGGTCTCCGAC+TGG + Chr4:65253554-65253573 MsG0480021856.01.T01:CDS 50.0%
AATGACTGAGTCGACTGCAG+TGG + Chr4:65252098-65252117 MsG0480021856.01.T01:CDS 50.0%
ACCTTCCGGACCTTCTTGTA+TGG - Chr4:65253521-65253540 None:intergenic 50.0%
AGATACCAAGGTCTCCGACT+GGG + Chr4:65253555-65253574 MsG0480021856.01.T01:CDS 50.0%
AGATCCTCCGAAAGCAACTC+AGG + Chr4:65253579-65253598 MsG0480021856.01.T01:CDS 50.0%
AGGGCTAAAACCCCATCATG+AGG - Chr4:65250636-65250655 None:intergenic 50.0%
ATGACTGAGTCGACTGCAGT+GGG + Chr4:65252099-65252118 MsG0480021856.01.T01:CDS 50.0%
CGGAGACCTTGGTATCTTGT+CGG - Chr4:65253552-65253571 None:intergenic 50.0%
GACAACATCGGTGGAACAAC+AGG - Chr4:65251371-65251390 None:intergenic 50.0%
GCAGGTTGCTCCATACAAGA+AGG + Chr4:65253508-65253527 MsG0480021856.01.T01:intron 50.0%
GCTGCGGGATTATTGTCGTT+GGG + Chr4:65251266-65251285 MsG0480021856.01.T01:CDS 50.0%
GGGACTACAGGTGTGAGTAA+AGG + Chr4:65251104-65251123 MsG0480021856.01.T01:intron 50.0%
GGGTCAGTTGGAAGGTTTCT+AGG - Chr4:65250579-65250598 None:intergenic 50.0%
GGTCGATTATGTTGCTGAGC+AGG + Chr4:65253375-65253394 MsG0480021856.01.T01:CDS 50.0%
GGTTTATCGCTCTTTGCTGC+GGG + Chr4:65251251-65251270 MsG0480021856.01.T01:CDS 50.0%
TCCAAACACGGAGGCAAAAG+TGG + Chr4:65252179-65252198 MsG0480021856.01.T01:CDS 50.0%
TCCATACAAGAAGGTCCGGA+AGG + Chr4:65253517-65253536 MsG0480021856.01.T01:CDS 50.0%
TGCTGCGGGATTATTGTCGT+TGG + Chr4:65251265-65251284 MsG0480021856.01.T01:CDS 50.0%
TGTCGGTGATGAACACCTTC+CGG - Chr4:65253535-65253554 None:intergenic 50.0%
TTTCGGAGGATCTTCCCAGT+CGG - Chr4:65253572-65253591 None:intergenic 50.0%
! AGCAGTGCCTGAGTTGCTTT+CGG - Chr4:65253589-65253608 None:intergenic 50.0%
!! ACCACTTTTGCCTCCGTGTT+TGG - Chr4:65252183-65252202 None:intergenic 50.0%
!! ACGGCTGCATCGACTATTTC+AGG - Chr4:65253133-65253152 None:intergenic 50.0%
!! AGGGTTGTTGGCTCCAAACA+CGG + Chr4:65252167-65252186 MsG0480021856.01.T01:CDS 50.0%
!!! CAAGGCCTTTTTTCACTCGG+TGG + Chr4:65252653-65252672 MsG0480021856.01.T01:intron 50.0%
ATCTTCCCAGTCGGAGACCT+TGG - Chr4:65253563-65253582 None:intergenic 55.0%
CAGCGGTGTGACTAACGTTC+AGG - Chr4:65252364-65252383 None:intergenic 55.0%
CGGAGGCAAAAGTGGTAGAC+TGG + Chr4:65252187-65252206 MsG0480021856.01.T01:CDS 55.0%
CTCAACACCCTCACCCTCAT+TGG + Chr4:65250514-65250533 MsG0480021856.01.T01:CDS 55.0%
GTCAATGCCGACAACATCGG+TGG - Chr4:65251380-65251399 None:intergenic 55.0%
! AGTGCCTGAGTTGCTTTCGG+AGG - Chr4:65253586-65253605 None:intergenic 55.0%
! GCGGTGAGCTTTGGTTGAGA+GGG + Chr4:65252241-65252260 MsG0480021856.01.T01:CDS 55.0%
! TGCGGTGAGCTTTGGTTGAG+AGG + Chr4:65252240-65252259 MsG0480021856.01.T01:CDS 55.0%
! TTTTTACCCCCAGGCAGCTG+CGG + Chr4:65252222-65252241 MsG0480021856.01.T01:CDS 55.0%
!! GTTGTTGGCTCCAAACACGG+AGG + Chr4:65252170-65252189 MsG0480021856.01.T01:CDS 55.0%
AAAGCTCACCGCAGCTGCCT+GGG - Chr4:65252233-65252252 None:intergenic 60.0%
GGTGCAGCGCCTTTGAGCAT+AGG + Chr4:65251458-65251477 MsG0480021856.01.T01:CDS 60.0%
TCGACTGCAGTGGGAACACG+TGG + Chr4:65252108-65252127 MsG0480021856.01.T01:CDS 60.0%
AAGCTCACCGCAGCTGCCTG+GGG - Chr4:65252232-65252251 None:intergenic 65.0%
CAAAGCTCACCGCAGCTGCC+TGG - Chr4:65252234-65252253 None:intergenic 65.0%
CAGGCAGCTGCGGTGAGCTT+TGG + Chr4:65252232-65252251 MsG0480021856.01.T01:CDS 65.0%
AGCTCACCGCAGCTGCCTGG+GGG - Chr4:65252231-65252250 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 65250462 65254021 65250462 ID=MsG0480021856.01;Name=MsG0480021856.01
Chr4 mRNA 65250462 65254021 65250462 ID=MsG0480021856.01.T01;Parent=MsG0480021856.01;Name=MsG0480021856.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0.66|0.71|1|0.83|0.71|7|383|503
Chr4 exon 65250462 65251115 65250462 ID=MsG0480021856.01.T01:exon:18016;Parent=MsG0480021856.01.T01
Chr4 exon 65251212 65251529 65251212 ID=MsG0480021856.01.T01:exon:18017;Parent=MsG0480021856.01.T01
Chr4 exon 65252090 65252279 65252090 ID=MsG0480021856.01.T01:exon:18018;Parent=MsG0480021856.01.T01
Chr4 exon 65252835 65252979 65252835 ID=MsG0480021856.01.T01:exon:18019;Parent=MsG0480021856.01.T01
Chr4 exon 65253292 65253396 65253292 ID=MsG0480021856.01.T01:exon:18020;Parent=MsG0480021856.01.T01
Chr4 exon 65253512 65253860 65253512 ID=MsG0480021856.01.T01:exon:18021;Parent=MsG0480021856.01.T01
Chr4 exon 65253888 65254021 65253888 ID=MsG0480021856.01.T01:exon:18022;Parent=MsG0480021856.01.T01
Chr4 CDS 65250462 65251115 65250462 ID=MsG0480021856.01.T01:cds;Parent=MsG0480021856.01.T01
Chr4 CDS 65251212 65251529 65251212 ID=MsG0480021856.01.T01:cds;Parent=MsG0480021856.01.T01
Chr4 CDS 65252090 65252279 65252090 ID=MsG0480021856.01.T01:cds;Parent=MsG0480021856.01.T01
Chr4 CDS 65252835 65252979 65252835 ID=MsG0480021856.01.T01:cds;Parent=MsG0480021856.01.T01
Chr4 CDS 65253292 65253396 65253292 ID=MsG0480021856.01.T01:cds;Parent=MsG0480021856.01.T01
Chr4 CDS 65253512 65253611 65253512 ID=MsG0480021856.01.T01:cds;Parent=MsG0480021856.01.T01
Chr4 three_prime_UTR 65253612 65253860 65253612 ID=MsG0480021856.01.T01:three_prime_utr;Parent=MsG0480021856.01.T01
Chr4 three_prime_UTR 65253888 65254021 65253888 ID=MsG0480021856.01.T01:three_prime_utr;Parent=MsG0480021856.01.T01
Gene Sequence

>MsG0480021856.01.T01

ATGGCATCTGCTACAAATTTCAACTTCGAAATCACCCAAAACAACATGATCACTCAACACCCTCACCCTCATTGGTATTCATCAAAAACTGGAATTTACAACAGTATACACTCTCCTAGAAACCTTCCAACTGACCCTTTTCTTGACATTGTTTCCTTCATTTTTTCACATCCTCATGATGGGGTTTTAGCCCTTATTGATTCTTCATCTGGGTCTTCCATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCCATGGCTTCTGCTTTACACAAAATGGGTGTTTCACAAGGTGATGTTGTTTTGCTTCTACTTCCAAATTCAATTTACTATCCTGTTATACTCTTGGCTGTTCTGTATTTAGGTGCTGTTTTTACACCATTGAATCCTCTTAGTAGTGTTGGTGAAATTCGTAAACAGGTTCAAGAGTGTGGTGTGAGTTTTGCTTTTACTATACCTGAAAATGTCAAGAAACTAGAGCTATTAGGTGGCATTAATCCCATTATTGCTGTGCCAGAAAATGAGAAGGATTTGAGGAATGAGTGTTTCTCAAGTTTTTTTAACCTTCTTTATGGTAAATTTGATTTGCCTCAAAGGGTAGTTATTAAACAGGAAGATACTGCTGGTATATTGTATTCTTCTGGGACTACAGGTAGTGTGTTTCTAGCTGTTTTGCCAATGTTTCATGTGTATGGTTTATCGCTCTTTGCTGCGGGATTATTGTCGTTGGGATCTACTGTCATTGTAATGAGGAAATTTGACATTGACGAGGTTATCAGGGTGATTGACAAATATAATGTTACACACTTTCCTGTTGTTCCACCGATGTTGTCGGCATTGACAATGAAGGCAAAGGGTGTTAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTCTCTTGCGGTGCAGCGCCTTTGAGCATAGGAGTTATTAGTGGTTTTGTCCATGCTTTCCCTAACGTTGATTTTATACAGGGTTATGGAATGACTGAGTCGACTGCAGTGGGAACACGTGGCTTCAATACTGAAAAGTTTCACAACTATTCGTCAATAGGGTTGTTGGCTCCAAACACGGAGGCAAAAGTGGTAGACTGGAACAATGGTACTTTTTTACCCCCAGGCAGCTGCGGTGAGCTTTGGTTGAGAGGGCCTTCTATTATGAGAGGATACTTGAATAATGAGGAAGCTACTATATCAACAATTGATAAAGATGGTTGGCTACATACAGGAGATATTGTTTATTTTGATCAGGATGGATATTTACATTTGGCTGACCGCTTGAAAGACATTATCAAATACAAGGATTTCAGTGCCAAAGATGAAGAAATTGGGGAAATTCCAGTGGCATTTGTTGTCAAGAAGGTGGTGGAAGTGTACTTTCTCCGAAGCATGTGGTCGATTATGTTGCTGAGCAGGTTGCTCCATACAAGAAGGTCCGGAAGGTGTTCATCACCGACAAGATACCAAGGTCTCCGACTGGGAAGATCCTCCGAAAGCAACTCAGGCACTGCTTGA

Protein sequence

>MsG0480021856.01.T01

MASATNFNFEITQNNMITQHPHPHWYSSKTGIYNSIHSPRNLPTDPFLDIVSFIFSHPHDGVLALIDSSSGSSISYSKLLPLVKSMASALHKMGVSQGDVVLLLLPNSIYYPVILLAVLYLGAVFTPLNPLSSVGEIRKQVQECGVSFAFTIPENVKKLELLGGINPIIAVPENEKDLRNECFSSFFNLLYGKFDLPQRVVIKQEDTAGILYSSGTTGSVFLAVLPMFHVYGLSLFAAGLLSLGSTVIVMRKFDIDEVIRVIDKYNVTHFPVVPPMLSALTMKAKGVNGSKLQSLRQVSCGAAPLSIGVISGFVHAFPNVDFIQGYGMTESTAVGTRGFNTEKFHNYSSIGLLAPNTEAKVVDWNNGTFLPPGSCGELWLRGPSIMRGYLNNEEATISTIDKDGWLHTGDIVYFDQDGYLHLADRLKDIIKYKDFSAKDEEIGEIPVAFVVKKVVEVYFLRSMWSIMLLSRLLHTRRSGRCSSPTRYQGLRLGRSSESNSGTA*