AlfalfaGEDB | MsG0880046639.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046639.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046639.01.T01	XP_024637061.1	65.761	368	51	6	1	293	1	368	2.05E-142	418

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046639.01.T01	Q9FN48	50.543	368	99	11	7	293	2	367	2.08E-98	299

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046639.01.T01	A0A396IE09	65.761	368	51	6	1	293	1	368	9.78e-143	418

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0880046639.01	-0.838598	2.615503e-57	3.520533e-54
MsG0080047910.01	MsG0880046639.01	0.845149	4.862475e-59	8.027733e-56
MsG0080047955.01	MsG0880046639.01	0.828694	7.796745e-55	7.807488e-52
MsG0080047956.01	MsG0880046639.01	0.837576	4.790304e-57	6.249230e-54
MsG0080047967.01	MsG0880046639.01	0.819105	1.382691e-52	1.054258e-49
MsG0080047989.01	MsG0880046639.01	0.804612	1.987364e-49	1.029278e-46
MsG0080048059.01	MsG0880046639.01	0.934661	2.859129e-96	2.194057e-91
MsG0080048068.01	MsG0880046639.01	0.832124	1.130710e-55	1.252054e-52
MsG0080048256.01	MsG0880046639.01	-0.814905	1.214060e-51	8.249172e-49
MsG0080048273.01	MsG0880046639.01	0.821794	3.339995e-53	2.744768e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046639.01.T01	MTR_4g112530	65.489	368	52	6	1	293	1	368	4.24e-145	415
MsG0880046639.01.T01	MTR_4g111880	96.875	160	5	0	1	160	1	160	5.73e-106	307

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046639.01.T01	AT5G23060	50.543	368	99	11	7	293	2	367	2.12e-99	299
MsG0880046639.01.T01	AT5G23060	44.051	311	91	9	7	236	2	310	1.81e-59	194

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Find 92 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCTCTAACACCCGC+AGG	0.631098	8:-76015763	None:intergenic
AAAGAATTTCAGTCAGCCCC+AGG	0.592968	8:-76015823	None:intergenic
AACACATGGATCGTTGGTGA+TGG	0.574713	8:+76015647	MsG0880046639.01.T01:CDS
AACGTGTTGCTGAAGCTGTA+GGG	0.570064	8:+76012940	MsG0880046639.01.T01:CDS
AAGAAGTGCCAAACAAAATA+CGG	0.454423	8:+76015150	MsG0880046639.01.T01:CDS
AAGAGCAAGTAGTGAAATGG+TGG	0.643538	8:-76012696	None:intergenic
AAGTGCTTCTTGAGCCTTCT+TGG	0.258220	8:-76013060	None:intergenic
AATCATCCTGCGGGTGTTAG+AGG	0.391320	8:+76015757	MsG0880046639.01.T01:CDS
AATGCTATGCGTCTAAGTTG+AGG	0.576915	8:-76012662	None:intergenic
AATTCATTCAGTCTTGGGAT+TGG	0.454342	8:+76013127	MsG0880046639.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCAAATGTCATTATCAC+CGG	-	Chr8:76013800-76013819	None:intergenic	30.0%
AACATTTATCCACACACTAA+CGG	-	Chr8:76014078-76014097	None:intergenic	30.0%
ACACGTATAATATAGGTACT+CGG	+	Chr8:76015577-76015596	MsG0880046639.01.T01:intron	30.0%
GGCAACAAATCTTAACTTAA+AGG	-	Chr8:76014998-76015017	None:intergenic	30.0%
GGCAATGTTAGTTAACATTT+AGG	+	Chr8:76013845-76013864	MsG0880046639.01.T01:intron	30.0%
GTGTAAGAGAAGAAACAATT+TGG	-	Chr8:76012769-76012788	None:intergenic	30.0%
TAGCACATTATAGCTCAAAT+AGG	-	Chr8:76013907-76013926	None:intergenic	30.0%
TCATTATCACCGGATAAAAT+TGG	-	Chr8:76013790-76013809	None:intergenic	30.0%
TGAATGGAAAGCAATTATGA+GGG	+	Chr8:76013994-76014013	MsG0880046639.01.T01:intron	30.0%
TGATGAAGTTATAGTTTCCA+TGG	-	Chr8:76014495-76014514	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	76012442	76015966	76012442	ID=MsG0880046639.01;Name=MsG0880046639.01
Chr8	mRNA	76012442	76015966	76012442	ID=MsG0880046639.01.T01;Parent=MsG0880046639.01;Name=MsG0880046639.01.T01;_AED=0.37;_eAED=0.38;_QI=121\|0.75\|0.6\|1\|0.75\|0.8\|5\|62\|339
Chr8	exon	76012442	76012790	76012442	ID=MsG0880046639.01.T01:exon:32404;Parent=MsG0880046639.01.T01
Chr8	exon	76012882	76013153	76012882	ID=MsG0880046639.01.T01:exon:32405;Parent=MsG0880046639.01.T01
Chr8	exon	76014828	76014902	76014828	ID=MsG0880046639.01.T01:exon:32406;Parent=MsG0880046639.01.T01
Chr8	exon	76015145	76015276	76015145	ID=MsG0880046639.01.T01:exon:32407;Parent=MsG0880046639.01.T01
Chr8	exon	76015592	76015966	76015592	ID=MsG0880046639.01.T01:exon:32408;Parent=MsG0880046639.01.T01
Chr8	five_prime_UTR	76012442	76012562	76012442	ID=MsG0880046639.01.T01:five_prime_utr;Parent=MsG0880046639.01.T01
Chr8	CDS	76012563	76012790	76012563	ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8	CDS	76012882	76013153	76012882	ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8	CDS	76014828	76014902	76014828	ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8	CDS	76015145	76015276	76015145	ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8	CDS	76015592	76015904	76015592	ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8	three_prime_UTR	76015905	76015966	76015905	ID=MsG0880046639.01.T01:three_prime_utr;Parent=MsG0880046639.01.T01

Gene Sequence

>MsG0880046639.01.T01

ATGGCAATGGAGATTACAGCCATGGCTTCACTTCCAACAACAAAACCTTCTCTTCCATCTCCTTCCACTTTACCTCACACAATCACCACCTTATCAAAACCTCAACTTAGACGCATAGCATTACCAACATCAACCACCATTTCACTACTTGCTCTTTTCACCCCTCCAAATGAAGCTAGAGCTGCTGTTAACATCTCCAAGGACCAAATTGTTTCTTCTCTTACACAAGTGGAGCAGACTATTGATCAGGTTCAGGTGGTTGGTTCTGGTTTTTTGGACTCAGCACAACGTGTTGCTGAAGCTGTAGGGAGTGCTTTGAAGCCTGGCTTCGATACCGCGTTGCCAATTGTGCAGCAGGCTGGACAAGAGGCTTTGAAAATTGCTTCTCCAGCCTTCTCTGAGGCTTCCAAGAAGGCTCAAGAAGCACTTCAGAGCTCTGGTCTTGATACCCAAACTGCTGCTAAGGTTTGCTTAATTCATTCAGTCTTGGGATTGGGACCGTCAGAGAAGGATAAGGACAAATCTGGTATTCCTCGCCTTCCGTCTAGTGCTAAAAACAAGATGGTTGCCATTCCATTGGAAGAAGTGCCAAACAAAATACGGGGACTGGTAAGGAATGTGAAGAGAGTGGAAGCTGAAATAGCAGCATTAAAGATTTCATATCTGAAGAAAATCAACAAAGGCACCAACATTGTGATCTTGGACTCGTACTCGGACTCGGCAAAGATAGTTGCTAGAACGCTAACAGGGCTTGGATTTAAGAACACATGGATCGTTGGTGATGGCTTTTCTGGAGGCAAAGGGTGGTTACAGAGTAGATTAGGAACAGATTCGTATAAATTTTCGTTTGCAGAGGTGTTGTCACCATCCAGAATCATCCTGCGGGTGTTAGAGGAGGTTTTGGAACAACCAGCAGACAATCTACTCAGAAACTTCTACCTGGGGCTGACTGAAATTCTTTTTCCTCACTCAACATTGAACTCTCGCAAATATATATATGTGAATGTGTGCCTTGATTAA

Protein sequence

>MsG0880046639.01.T01

MAMEITAMASLPTTKPSLPSPSTLPHTITTLSKPQLRRIALPTSTTISLLALFTPPNEARAAVNISKDQIVSSLTQVEQTIDQVQVVGSGFLDSAQRVAEAVGSALKPGFDTALPIVQQAGQEALKIASPAFSEASKKAQEALQSSGLDTQTAAKVCLIHSVLGLGPSEKDKDKSGIPRLPSSAKNKMVAIPLEEVPNKIRGLVRNVKRVEAEIAALKISYLKKINKGTNIVILDSYSDSAKIVARTLTGLGFKNTWIVGDGFSGGKGWLQSRLGTDSYKFSFAEVLSPSRIILRVLEEVLEQPADNLLRNFYLGLTEILFPHSTLNSRKYIYVNVCLD*