AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046639.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046639.01.T01 MTR_4g112530 65.489 368 52 6 1 293 1 368 4.24e-145 415
MsG0880046639.01.T01 MTR_4g111880 96.875 160 5 0 1 160 1 160 5.73e-106 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046639.01.T01 AT5G23060 50.543 368 99 11 7 293 2 367 2.12e-99 299
MsG0880046639.01.T01 AT5G23060 44.051 311 91 9 7 236 2 310 1.81e-59 194

Find 92 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTCAGGTGGTTGGTTC+TGG 0.203917 8:+76012900 MsG0880046639.01.T01:CDS
CACGAGTGGAAGAGTTTAAA+AGG 0.251135 8:-76015958 None:intergenic
AAGTGCTTCTTGAGCCTTCT+TGG 0.258220 8:-76013060 None:intergenic
TAACACCCGCAGGATGATTC+TGG 0.304257 8:-76015753 None:intergenic
TGCTTAATTCATTCAGTCTT+GGG 0.311059 8:+76013122 MsG0880046639.01.T01:CDS
GCGGGTGTTAGAGGAGGTTT+TGG 0.312180 8:+76015766 MsG0880046639.01.T01:CDS
ATAGTTGCTAGAACGCTAAC+AGG 0.324437 8:+76015611 MsG0880046639.01.T01:CDS
AGCAAACCTTAGCAGCAGTT+TGG 0.346069 8:-76013103 None:intergenic
ACAGCAGCTCTAGCTTCATT+TGG 0.354989 8:-76012728 None:intergenic
TGTCCAGCCTGCTGCACAAT+TGG 0.364015 8:-76012996 None:intergenic
GCAAACCTTAGCAGCAGTTT+GGG 0.377401 8:-76013102 None:intergenic
ATTCATTCAGTCTTGGGATT+GGG 0.391181 8:+76013128 MsG0880046639.01.T01:CDS
AATCATCCTGCGGGTGTTAG+AGG 0.391320 8:+76015757 MsG0880046639.01.T01:CDS
AGGCACCAACATTGTGATCT+TGG 0.398969 8:+76015250 MsG0880046639.01.T01:CDS
CGCGTTGCCAATTGTGCAGC+AGG 0.403571 8:+76012989 MsG0880046639.01.T01:CDS
AGAAGAAACAATTTGGTCCT+TGG 0.404497 8:-76012759 None:intergenic
GTGTAAGAGAAGAAACAATT+TGG 0.416534 8:-76012766 None:intergenic
TTGCTTAATTCATTCAGTCT+TGG 0.424113 8:+76013121 MsG0880046639.01.T01:CDS
GCTAGAACGCTAACAGGGCT+TGG 0.427263 8:+76015617 MsG0880046639.01.T01:CDS
GCAGACTATTGATCAGGTTC+AGG 0.429751 8:+76012887 MsG0880046639.01.T01:CDS
TTCGAGGACTTGATTAATCA+AGG 0.430279 8:-76015895 None:intergenic
GTAGGGAGTGCTTTGAAGCC+TGG 0.435558 8:+76012957 MsG0880046639.01.T01:CDS
TTAGTTGCTAGTGGTTGGTT+TGG 0.438252 8:-76012538 None:intergenic
AATTCATTCAGTCTTGGGAT+TGG 0.454342 8:+76013127 MsG0880046639.01.T01:CDS
TTGCCAATTGTGCAGCAGGC+TGG 0.454380 8:+76012993 MsG0880046639.01.T01:CDS
AAGAAGTGCCAAACAAAATA+CGG 0.454423 8:+76015150 MsG0880046639.01.T01:CDS
GGGTGGTTACAGAGTAGATT+AGG 0.455550 8:+76015686 MsG0880046639.01.T01:CDS
GAGAAGGATAAGGACAAATC+TGG 0.457337 8:+76014832 MsG0880046639.01.T01:CDS
ATTGATCAGGTTCAGGTGGT+TGG 0.466359 8:+76012894 MsG0880046639.01.T01:CDS
GTGGAAGGAGATGGAAGAGA+AGG 0.477837 8:-76012608 None:intergenic
GCAGCTCTAGCTTCATTTGG+AGG 0.478964 8:-76012725 None:intergenic
ACAAAATACGGGGACTGGTA+AGG 0.484660 8:+76015162 MsG0880046639.01.T01:CDS
GAAAAGAGCAAGTAGTGAAA+TGG 0.487604 8:-76012699 None:intergenic
CAAGAAGCACTTCAGAGCTC+TGG 0.489590 8:+76013071 MsG0880046639.01.T01:CDS
TTTCTGAGTAGATTGTCTGC+TGG 0.490373 8:-76015794 None:intergenic
CTACTCAGAAACTTCTACCT+GGG 0.491136 8:+76015806 MsG0880046639.01.T01:CDS
ATCAAATGAATATAATTTCG+AGG 0.494558 8:-76015911 None:intergenic
TTGGAAGCCTCAGAGAAGGC+TGG 0.503167 8:-76013041 None:intergenic
GGTGATTGTGTGAGGTAAAG+TGG 0.504202 8:-76012627 None:intergenic
CATTGTTAGTTGCTAGTGGT+TGG 0.506706 8:-76012543 None:intergenic
GGTGGAGCAGACTATTGATC+AGG 0.515034 8:+76012881 MsG0880046639.01.T01:intron
TGATACCCAAACTGCTGCTA+AGG 0.515675 8:+76013097 MsG0880046639.01.T01:CDS
CAGCTCTAGCTTCATTTGGA+GGG 0.518822 8:-76012724 None:intergenic
CTTCTCTGAGGCTTCCAAGA+AGG 0.520510 8:+76013046 MsG0880046639.01.T01:CDS
GGTAAGGAATGTGAAGAGAG+TGG 0.527256 8:+76015178 MsG0880046639.01.T01:CDS
CAACGTGTTGCTGAAGCTGT+AGG 0.541146 8:+76012939 MsG0880046639.01.T01:CDS
AGAAGTGCCAAACAAAATAC+GGG 0.543009 8:+76015151 MsG0880046639.01.T01:CDS
ATAATATAGGTACTCGGACT+CGG 0.543745 8:+76015583 MsG0880046639.01.T01:intron
GCCAAACAAAATACGGGGAC+TGG 0.544882 8:+76015157 MsG0880046639.01.T01:CDS
GATTGATATTAGGTCAGAGA+AGG 0.545508 8:+76014816 MsG0880046639.01.T01:intron
GGCAACGCGGTATCGAAGCC+AGG 0.545635 8:-76012975 None:intergenic
CGAGAGTTCAATGTTGAGTG+AGG 0.548439 8:-76015848 None:intergenic
TGAGGTAAAGTGGAAGGAGA+TGG 0.548724 8:-76012617 None:intergenic
TGTTGTTGGAAGTGAAGCCA+TGG 0.556108 8:-76012582 None:intergenic
ACCATCCAGAATCATCCTGC+GGG 0.557341 8:+76015748 MsG0880046639.01.T01:CDS
AGCTCTAGCTTCATTTGGAG+GGG 0.557709 8:-76012723 None:intergenic
TTTAAGAACACATGGATCGT+TGG 0.558923 8:+76015641 MsG0880046639.01.T01:CDS
TTGCCATTGTTAGTTGCTAG+TGG 0.561348 8:-76012547 None:intergenic
TATTAGGTCAGAGAAGGATA+AGG 0.566526 8:+76014822 MsG0880046639.01.T01:intron
AACGTGTTGCTGAAGCTGTA+GGG 0.570064 8:+76012940 MsG0880046639.01.T01:CDS
AACACATGGATCGTTGGTGA+TGG 0.574713 8:+76015647 MsG0880046639.01.T01:CDS
GACTATTGATCAGGTTCAGG+TGG 0.574947 8:+76012890 MsG0880046639.01.T01:CDS
GGCAATGGAGATTACAGCCA+TGG 0.575193 8:+76012565 MsG0880046639.01.T01:CDS
TCTACTCAGAAACTTCTACC+TGG 0.575397 8:+76015805 MsG0880046639.01.T01:CDS
GTAGTGTGATTAGAGATGTG+TGG 0.576524 8:-76012476 None:intergenic
AATGCTATGCGTCTAAGTTG+AGG 0.576915 8:-76012662 None:intergenic
AGTGAAATGGTGGTTGATGT+TGG 0.580317 8:-76012686 None:intergenic
ACGAGTGGAAGAGTTTAAAA+GGG 0.589356 8:-76015957 None:intergenic
AAAGAATTTCAGTCAGCCCC+AGG 0.592968 8:-76015823 None:intergenic
GGCTTGGATTTAAGAACACA+TGG 0.597465 8:+76015633 MsG0880046639.01.T01:CDS
CTAGCAACTAACAATGGCAA+TGG 0.598628 8:+76012550 MsG0880046639.01.T01:exon
TGTGCAGCAGGCTGGACAAG+AGG 0.599418 8:+76013001 MsG0880046639.01.T01:CDS
TGCTTCTCCAGCCTTCTCTG+AGG 0.602112 8:+76013034 MsG0880046639.01.T01:CDS
CGAGTCCAAGATCACAATGT+TGG 0.602753 8:-76015255 None:intergenic
CATCCTGCGGGTGTTAGAGG+AGG 0.609697 8:+76015760 MsG0880046639.01.T01:CDS
CTTCTTGGAAGCCTCAGAGA+AGG 0.611514 8:-76013045 None:intergenic
CACCATCCAGAATCATCCTG+CGG 0.622798 8:+76015747 MsG0880046639.01.T01:CDS
AGCTGCTGTTAACATCTCCA+AGG 0.626049 8:+76012742 MsG0880046639.01.T01:CDS
AAACCTCCTCTAACACCCGC+AGG 0.631098 8:-76015763 None:intergenic
ACCCGCAGGATGATTCTGGA+TGG 0.642839 8:-76015749 None:intergenic
AAGAGCAAGTAGTGAAATGG+TGG 0.643538 8:-76012696 None:intergenic
CTGCTGCACAATTGGCAACG+CGG 0.645976 8:-76012988 None:intergenic
GATAAGGTGGTGATTGTGTG+AGG 0.648070 8:-76012635 None:intergenic
TTAGCACTAGACGGAAGGCG+AGG 0.649528 8:-76014859 None:intergenic
CAACCACTAGCAACTAACAA+TGG 0.650476 8:+76012544 MsG0880046639.01.T01:exon
ACACGTATAATATAGGTACT+CGG 0.651202 8:+76015577 MsG0880046639.01.T01:intron
TACTCAGAAACTTCTACCTG+GGG 0.659837 8:+76015807 MsG0880046639.01.T01:CDS
TATCTGAAGAAAATCAACAA+AGG 0.667456 8:+76015230 MsG0880046639.01.T01:CDS
ATTGTGTGAGGTAAAGTGGA+AGG 0.668375 8:-76012623 None:intergenic
TAGTTGCTAGAACGCTAACA+GGG 0.678340 8:+76015612 MsG0880046639.01.T01:CDS
TTGATGATAGAAGAGTGAAG+TGG 0.684018 8:-76012515 None:intergenic
GAAGTGCCAAACAAAATACG+GGG 0.750558 8:+76015152 MsG0880046639.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATTTATTATGCAAA+CGG - Chr8:76013155-76013174 None:intergenic 10.0%
!! TAACACTAAAAAAAAAAAGT+TGG - Chr8:76015535-76015554 None:intergenic 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG - Chr8:76013340-76013359 None:intergenic 15.0%
!! AAAAAAAATCCAAAACAAAC+AGG - Chr8:76013243-76013262 None:intergenic 20.0%
!! AACTACATTTGATTGATATT+AGG + Chr8:76014806-76014825 MsG0880046639.01.T01:intron 20.0%
!! AAGTTTATTACAATGAGTAT+AGG - Chr8:76015056-76015075 None:intergenic 20.0%
!! AATAGTAAGATAGATTTGAA+AGG - Chr8:76015288-76015307 None:intergenic 20.0%
!! ATCAAATGAATATAATTTCG+AGG - Chr8:76015914-76015933 None:intergenic 20.0%
!! ATCAGATTGATAAATTAACT+TGG - Chr8:76014384-76014403 None:intergenic 20.0%
!! ATCTCTATAACAAAAGATAA+AGG + Chr8:76013216-76013235 MsG0880046639.01.T01:intron 20.0%
!! TAACTTACATAAAAACAGTT+TGG - Chr8:76013588-76013607 None:intergenic 20.0%
!! TCTCTATAACAAAAGATAAA+GGG + Chr8:76013217-76013236 MsG0880046639.01.T01:intron 20.0%
!!! AAAATTGCATTTCTAGTTAA+AGG - Chr8:76012851-76012870 None:intergenic 20.0%
!!! AAATTGCATTTCTAGTTAAA+GGG - Chr8:76012850-76012869 None:intergenic 20.0%
!!! AATGCAATTTTTTTTTATGC+AGG + Chr8:76012860-76012879 MsG0880046639.01.T01:intron 20.0%
!!! AATGTGCTAAATAAACTTTT+GGG + Chr8:76013918-76013937 MsG0880046639.01.T01:intron 20.0%
!!! ATCTATTTTTTCTTAATGCA+AGG + Chr8:76013402-76013421 MsG0880046639.01.T01:intron 20.0%
!!! ATGATAATTAAGTGTTTTTG+TGG + Chr8:76013188-76013207 MsG0880046639.01.T01:intron 20.0%
!!! TAATGTGCTAAATAAACTTT+TGG + Chr8:76013917-76013936 MsG0880046639.01.T01:intron 20.0%
!!! TCAATACTTATTAACTTGTT+GGG + Chr8:76015469-76015488 MsG0880046639.01.T01:intron 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG - Chr8:76013367-76013386 None:intergenic 20.0%
!!! TTCAATACTTATTAACTTGT+TGG + Chr8:76015468-76015487 MsG0880046639.01.T01:intron 20.0%
!!! TTTATGTCTTTGGTTTTATA+TGG + Chr8:76013964-76013983 MsG0880046639.01.T01:intron 20.0%
! AATCATTTCAGTTCACTATA+TGG + Chr8:76015312-76015331 MsG0880046639.01.T01:intron 25.0%
! AATTTGTATTTAGATTCTCG+TGG + Chr8:76014938-76014957 MsG0880046639.01.T01:intron 25.0%
! ACTTATATTCTTAAGCTCTT+CGG - Chr8:76013633-76013652 None:intergenic 25.0%
! ATAATAACTGATCATAACGA+AGG - Chr8:76015019-76015038 None:intergenic 25.0%
! CAATGTTAGTTAACATTTAG+GGG + Chr8:76013847-76013866 MsG0880046639.01.T01:intron 25.0%
! CAATTATAATACTCCAAAAG+TGG - Chr8:76014268-76014287 None:intergenic 25.0%
! CTTGTTAAAGTTAGAAACTT+TGG - Chr8:76012807-76012826 None:intergenic 25.0%
! GCAATGTTAGTTAACATTTA+GGG + Chr8:76013846-76013865 MsG0880046639.01.T01:intron 25.0%
! TATCTGAAGAAAATCAACAA+AGG + Chr8:76015230-76015249 MsG0880046639.01.T01:CDS 25.0%
! TGGAAAGTGATAGTATAAAA+TGG - Chr8:76014038-76014057 None:intergenic 25.0%
! TTAGACAACACGTATAATAT+AGG + Chr8:76015570-76015589 MsG0880046639.01.T01:intron 25.0%
! TTTCTCAAATTATCAAGTGT+CGG - Chr8:76015377-76015396 None:intergenic 25.0%
!! AGAAAATGTTGTTTGACATA+AGG - Chr8:76014710-76014729 None:intergenic 25.0%
!!! AAAACAGTTTGGCTTTATTT+TGG - Chr8:76013577-76013596 None:intergenic 25.0%
!!! TATTTGAGACCAATTTTATC+CGG + Chr8:76013778-76013797 MsG0880046639.01.T01:intron 25.0%
!!! TTGATATTTTGATTTAGACG+TGG + Chr8:76014409-76014428 MsG0880046639.01.T01:intron 25.0%
AAAGCAAATGTCATTATCAC+CGG - Chr8:76013800-76013819 None:intergenic 30.0%
AACATTTATCCACACACTAA+CGG - Chr8:76014078-76014097 None:intergenic 30.0%
ACACGTATAATATAGGTACT+CGG + Chr8:76015577-76015596 MsG0880046639.01.T01:intron 30.0%
GGCAACAAATCTTAACTTAA+AGG - Chr8:76014998-76015017 None:intergenic 30.0%
GGCAATGTTAGTTAACATTT+AGG + Chr8:76013845-76013864 MsG0880046639.01.T01:intron 30.0%
GTGTAAGAGAAGAAACAATT+TGG - Chr8:76012769-76012788 None:intergenic 30.0%
TAGCACATTATAGCTCAAAT+AGG - Chr8:76013907-76013926 None:intergenic 30.0%
TCATTATCACCGGATAAAAT+TGG - Chr8:76013790-76013809 None:intergenic 30.0%
TGAATGGAAAGCAATTATGA+GGG + Chr8:76013994-76014013 MsG0880046639.01.T01:intron 30.0%
TGATGAAGTTATAGTTTCCA+TGG - Chr8:76014495-76014514 None:intergenic 30.0%
TGCTTAATTCATTCAGTCTT+GGG + Chr8:76013122-76013141 MsG0880046639.01.T01:CDS 30.0%
TTGCTTAATTCATTCAGTCT+TGG + Chr8:76013121-76013140 MsG0880046639.01.T01:CDS 30.0%
! GTATAAATTTTCGTTTGCAG+AGG + Chr8:76015718-76015737 MsG0880046639.01.T01:CDS 30.0%
! TGCAATTTTGTGCTTCTATA+TGG + Chr8:76014644-76014663 MsG0880046639.01.T01:intron 30.0%
!! AAGAAGTGCCAAACAAAATA+CGG + Chr8:76015150-76015169 MsG0880046639.01.T01:CDS 30.0%
!! TCTAAGTTGAGGTTTTGATA+AGG - Chr8:76012654-76012673 None:intergenic 30.0%
!!! ATCTTGTTTTTAGCACTAGA+CGG - Chr8:76014871-76014890 None:intergenic 30.0%
!!! GCAATTTTTTTTTATGCAGG+TGG + Chr8:76012863-76012882 MsG0880046639.01.T01:intron 30.0%
AACATATCAAGTGTTTGAGC+TGG - Chr8:76014776-76014795 None:intergenic 35.0%
AAGGAGCTTGAAAATTCACA+AGG - Chr8:76014691-76014710 None:intergenic 35.0%
AATCTCACAAGTGTTTATGC+TGG + Chr8:76013711-76013730 MsG0880046639.01.T01:intron 35.0%
AATTCATTCAGTCTTGGGAT+TGG + Chr8:76013127-76013146 MsG0880046639.01.T01:CDS 35.0%
AATTGCATCAAAGCATGTCA+AGG - Chr8:76014631-76014650 None:intergenic 35.0%
ACACACACTCTTTATGTCTT+TGG + Chr8:76013954-76013973 MsG0880046639.01.T01:intron 35.0%
ACATTTATCTGTGGCATACA+TGG + Chr8:76013824-76013843 MsG0880046639.01.T01:intron 35.0%
AGAAGAAACAATTTGGTCCT+TGG - Chr8:76012762-76012781 None:intergenic 35.0%
AGATAGAGGTAAGACACTTA+CGG - Chr8:76014904-76014923 None:intergenic 35.0%
ATAATATAGGTACTCGGACT+CGG + Chr8:76015583-76015602 MsG0880046639.01.T01:intron 35.0%
ATTCATTCAGTCTTGGGATT+GGG + Chr8:76013128-76013147 MsG0880046639.01.T01:CDS 35.0%
ATTGCATCAAAGCATGTCAA+GGG - Chr8:76014630-76014649 None:intergenic 35.0%
CATAATTGCTTTCCATTCAC+CGG - Chr8:76013993-76014012 None:intergenic 35.0%
CATTTCAGTTCACTATATGG+CGG + Chr8:76015315-76015334 MsG0880046639.01.T01:intron 35.0%
GAAAAGAGCAAGTAGTGAAA+TGG - Chr8:76012702-76012721 None:intergenic 35.0%
GAAAATTCACAAGGTCATGA+TGG - Chr8:76014682-76014701 None:intergenic 35.0%
GATTGATATTAGGTCAGAGA+AGG + Chr8:76014816-76014835 MsG0880046639.01.T01:intron 35.0%
GCAGCATCTAGTTAGATATT+TGG - Chr8:76014188-76014207 None:intergenic 35.0%
GTAGTATGAGTACTAGATAG+AGG - Chr8:76014918-76014937 None:intergenic 35.0%
GTCTAGTGCTAAAAACAAGA+TGG + Chr8:76014870-76014889 MsG0880046639.01.T01:CDS 35.0%
GTGAATGGAAAGCAATTATG+AGG + Chr8:76013993-76014012 MsG0880046639.01.T01:intron 35.0%
TATTAGGTCAGAGAAGGATA+AGG + Chr8:76014822-76014841 MsG0880046639.01.T01:intron 35.0%
TGATATACTTTCACGTGAAC+TGG + Chr8:76014130-76014149 MsG0880046639.01.T01:intron 35.0%
TTCGAGGACTTGATTAATCA+AGG - Chr8:76015898-76015917 None:intergenic 35.0%
TTTAAGAACACATGGATCGT+TGG + Chr8:76015641-76015660 MsG0880046639.01.T01:CDS 35.0%
TTTATACTGTCACATGCCTT+TGG + Chr8:76014096-76014115 MsG0880046639.01.T01:intron 35.0%
! AGACATAAAGAGTGTGTGTA+TGG - Chr8:76013953-76013972 None:intergenic 35.0%
! GACATAAAGAGTGTGTGTAT+GGG - Chr8:76013952-76013971 None:intergenic 35.0%
! GGTGATAATGACATTTGCTT+TGG + Chr8:76013799-76013818 MsG0880046639.01.T01:intron 35.0%
! TATAGTTTCCATGGTTGATG+AGG - Chr8:76014486-76014505 None:intergenic 35.0%
! TTGATGATAGAAGAGTGAAG+TGG - Chr8:76012518-76012537 None:intergenic 35.0%
!! AAGTTGAGGTTTTGATAAGG+TGG - Chr8:76012651-76012670 None:intergenic 35.0%
!! AGAAGTGCCAAACAAAATAC+GGG + Chr8:76015151-76015170 MsG0880046639.01.T01:CDS 35.0%
!! GAATTTGCTTGTTCCACTTT+TGG + Chr8:76014252-76014271 MsG0880046639.01.T01:intron 35.0%
!! GCTTTGATTTGAACTCAGAT+TGG + Chr8:76015127-76015146 MsG0880046639.01.T01:intron 35.0%
!!! CTTTGGTTTTATATGGTCAC+CGG + Chr8:76013971-76013990 MsG0880046639.01.T01:intron 35.0%
AAGAGCAAGTAGTGAAATGG+TGG - Chr8:76012699-76012718 None:intergenic 40.0%
AATGCTATGCGTCTAAGTTG+AGG - Chr8:76012665-76012684 None:intergenic 40.0%
AGCATGAGCATCACTTCTTA+TGG + Chr8:76015105-76015124 MsG0880046639.01.T01:intron 40.0%
ATAGTTGCTAGAACGCTAAC+AGG + Chr8:76015611-76015630 MsG0880046639.01.T01:CDS 40.0%
ATTGTGTGAGGTAAAGTGGA+AGG - Chr8:76012626-76012645 None:intergenic 40.0%
CAAACAACCAAGGTGATTGA+AGG + Chr8:76014446-76014465 MsG0880046639.01.T01:intron 40.0%
CAACCACTAGCAACTAACAA+TGG + Chr8:76012544-76012563 MsG0880046639.01.T01:exon 40.0%
CATTGTTAGTTGCTAGTGGT+TGG - Chr8:76012546-76012565 None:intergenic 40.0%
CTACTCAGAAACTTCTACCT+GGG + Chr8:76015806-76015825 MsG0880046639.01.T01:CDS 40.0%
CTAGCAACTAACAATGGCAA+TGG + Chr8:76012550-76012569 MsG0880046639.01.T01:exon 40.0%
GAAAGCAATTATGAGGGTGA+GGG + Chr8:76014000-76014019 MsG0880046639.01.T01:intron 40.0%
GAGAAGGATAAGGACAAATC+TGG + Chr8:76014832-76014851 MsG0880046639.01.T01:CDS 40.0%
GCTTTGGCAACATTTATCTG+TGG + Chr8:76013815-76013834 MsG0880046639.01.T01:intron 40.0%
GGCTTGGATTTAAGAACACA+TGG + Chr8:76015633-76015652 MsG0880046639.01.T01:CDS 40.0%
GTAGTGTGATTAGAGATGTG+TGG - Chr8:76012479-76012498 None:intergenic 40.0%
TACTCAGAAACTTCTACCTG+GGG + Chr8:76015807-76015826 MsG0880046639.01.T01:CDS 40.0%
TAGTTGCTAGAACGCTAACA+GGG + Chr8:76015612-76015631 MsG0880046639.01.T01:CDS 40.0%
TATCACCCAAATCTCTCCAA+AGG - Chr8:76014115-76014134 None:intergenic 40.0%
TCTACTCAGAAACTTCTACC+TGG + Chr8:76015805-76015824 MsG0880046639.01.T01:CDS 40.0%
TTATCTACGAGACACAGACT+CGG + Chr8:76015342-76015361 MsG0880046639.01.T01:intron 40.0%
TTGAATGTAACCTCACGTGT+CGG + Chr8:76015406-76015425 MsG0880046639.01.T01:intron 40.0%
TTGCCATTGTTAGTTGCTAG+TGG - Chr8:76012550-76012569 None:intergenic 40.0%
TTTATATGGTCACCGGTGAA+TGG + Chr8:76013978-76013997 MsG0880046639.01.T01:intron 40.0%
TTTCTGAGTAGATTGTCTGC+TGG - Chr8:76015797-76015816 None:intergenic 40.0%
TTTGTACCCGCGAAAATTGA+AGG - Chr8:76014597-76014616 None:intergenic 40.0%
! AAGAGTGTGTGTATGGGATT+TGG - Chr8:76013946-76013965 None:intergenic 40.0%
! AAGGGCATGCATGTAAATGA+AGG - Chr8:76012832-76012851 None:intergenic 40.0%
! ACATGCCTTTGGAGAGATTT+GGG + Chr8:76014107-76014126 MsG0880046639.01.T01:intron 40.0%
! AGTGAAATGGTGGTTGATGT+TGG - Chr8:76012689-76012708 None:intergenic 40.0%
! GAAGTGCCAAACAAAATACG+GGG + Chr8:76015152-76015171 MsG0880046639.01.T01:CDS 40.0%
! GATAAAGGGCCTGTTTGTTT+TGG + Chr8:76013231-76013250 MsG0880046639.01.T01:intron 40.0%
! GATGCATGTGTTTTCTTTGC+AGG + Chr8:76014740-76014759 MsG0880046639.01.T01:intron 40.0%
! TTAGTTGCTAGTGGTTGGTT+TGG - Chr8:76012541-76012560 None:intergenic 40.0%
! TTCAATTTTCGCGGGTACAA+AGG + Chr8:76014596-76014615 MsG0880046639.01.T01:intron 40.0%
!! CTCAAATTATCAAGTGTCGG+TGG - Chr8:76015374-76015393 None:intergenic 40.0%
!!! GGAAGAGAAGGTTTTGTTGT+TGG - Chr8:76012599-76012618 None:intergenic 40.0%
!!! TGTTTTTAGCACTAGACGGA+AGG - Chr8:76014867-76014886 None:intergenic 40.0%
AAAATGCTAACAAGTGCCCC+AGG - Chr8:76015512-76015531 None:intergenic 45.0%
AAAGAATTTCAGTCAGCCCC+AGG - Chr8:76015826-76015845 None:intergenic 45.0%
AAATGCTAACAAGTGCCCCA+GGG - Chr8:76015511-76015530 None:intergenic 45.0%
AAGTGCTTCTTGAGCCTTCT+TGG - Chr8:76013063-76013082 None:intergenic 45.0%
ACCAGATAGGAGGAAACAAG+AGG - Chr8:76014565-76014584 None:intergenic 45.0%
AGCAAACCTTAGCAGCAGTT+TGG - Chr8:76013106-76013125 None:intergenic 45.0%
AGCTGCTGTTAACATCTCCA+AGG + Chr8:76012742-76012761 MsG0880046639.01.T01:CDS 45.0%
AGGCACCAACATTGTGATCT+TGG + Chr8:76015250-76015269 MsG0880046639.01.T01:CDS 45.0%
ATTGATCAGGTTCAGGTGGT+TGG + Chr8:76012894-76012913 MsG0880046639.01.T01:CDS 45.0%
CATTGTGATCTTGGACTCGT+AGG + Chr8:76015259-76015278 MsG0880046639.01.T01:intron 45.0%
CGAGAGTTCAATGTTGAGTG+AGG - Chr8:76015851-76015870 None:intergenic 45.0%
CGAGTCCAAGATCACAATGT+TGG - Chr8:76015258-76015277 None:intergenic 45.0%
GACTATTGATCAGGTTCAGG+TGG + Chr8:76012890-76012909 MsG0880046639.01.T01:CDS 45.0%
GAGGTAAGACACTTACGGAA+TGG - Chr8:76014899-76014918 None:intergenic 45.0%
GATAAGGTGGTGATTGTGTG+AGG - Chr8:76012638-76012657 None:intergenic 45.0%
GCAAACCTTAGCAGCAGTTT+GGG - Chr8:76013105-76013124 None:intergenic 45.0%
GCAGACTATTGATCAGGTTC+AGG + Chr8:76012887-76012906 MsG0880046639.01.T01:CDS 45.0%
GGAAAGCAATTATGAGGGTG+AGG + Chr8:76013999-76014018 MsG0880046639.01.T01:intron 45.0%
GGGTGGTTACAGAGTAGATT+AGG + Chr8:76015686-76015705 MsG0880046639.01.T01:CDS 45.0%
GGTAAGGAATGTGAAGAGAG+TGG + Chr8:76015178-76015197 MsG0880046639.01.T01:CDS 45.0%
GGTGATTGTGTGAGGTAAAG+TGG - Chr8:76012630-76012649 None:intergenic 45.0%
TGAGGTAAAGTGGAAGGAGA+TGG - Chr8:76012620-76012639 None:intergenic 45.0%
TGATACCCAAACTGCTGCTA+AGG + Chr8:76013097-76013116 MsG0880046639.01.T01:CDS 45.0%
TGCTGCACAACAAACAACCA+AGG + Chr8:76014436-76014455 MsG0880046639.01.T01:intron 45.0%
TGTTGTTGGAAGTGAAGCCA+TGG - Chr8:76012585-76012604 None:intergenic 45.0%
TTATCCACACACTAACGGTG+CGG - Chr8:76014073-76014092 None:intergenic 45.0%
! AACACATGGATCGTTGGTGA+TGG + Chr8:76015647-76015666 MsG0880046639.01.T01:CDS 45.0%
! AACGTGTTGCTGAAGCTGTA+GGG + Chr8:76012940-76012959 MsG0880046639.01.T01:CDS 45.0%
! ACAAAATACGGGGACTGGTA+AGG + Chr8:76015162-76015181 MsG0880046639.01.T01:CDS 45.0%
! ACAGCAGCTCTAGCTTCATT+TGG - Chr8:76012731-76012750 None:intergenic 45.0%
! ACCAGTCCCCGTATTTTGTT+TGG - Chr8:76015161-76015180 None:intergenic 45.0%
! ACCTCTTGTTTCCTCCTATC+TGG + Chr8:76014561-76014580 MsG0880046639.01.T01:intron 45.0%
! AGCTCTAGCTTCATTTGGAG+GGG - Chr8:76012726-76012745 None:intergenic 45.0%
! CACATGCCTTTGGAGAGATT+TGG + Chr8:76014106-76014125 MsG0880046639.01.T01:intron 45.0%
! CAGCTCTAGCTTCATTTGGA+GGG - Chr8:76012727-76012746 None:intergenic 45.0%
! CCATCTCCTTCAATTTTCGC+GGG + Chr8:76014588-76014607 MsG0880046639.01.T01:intron 45.0%
! GCCATCTCCTTCAATTTTCG+CGG + Chr8:76014587-76014606 MsG0880046639.01.T01:intron 45.0%
!! ATGGCTTTTCTGGAGGCAAA+GGG + Chr8:76015666-76015685 MsG0880046639.01.T01:CDS 45.0%
!! TCCATGGTTGATGAGGCTAT+TGG - Chr8:76014479-76014498 None:intergenic 45.0%
!!! ATCGTTGGTGATGGCTTTTC+TGG + Chr8:76015656-76015675 MsG0880046639.01.T01:CDS 45.0%
!!! GGTGGTTGGTTCTGGTTTTT+TGG + Chr8:76012908-76012927 MsG0880046639.01.T01:CDS 45.0%
AAGGAGATGGCAGACCAGAT+AGG - Chr8:76014578-76014597 None:intergenic 50.0%
AATCATCCTGCGGGTGTTAG+AGG + Chr8:76015757-76015776 MsG0880046639.01.T01:CDS 50.0%
AATGCTAACAAGTGCCCCAG+GGG - Chr8:76015510-76015529 None:intergenic 50.0%
ACCATCCAGAATCATCCTGC+GGG + Chr8:76015748-76015767 MsG0880046639.01.T01:CDS 50.0%
CACCATCCAGAATCATCCTG+CGG + Chr8:76015747-76015766 MsG0880046639.01.T01:CDS 50.0%
CCCGCGAAAATTGAAGGAGA+TGG - Chr8:76014591-76014610 None:intergenic 50.0%
CTTCTTGGAAGCCTCAGAGA+AGG - Chr8:76013048-76013067 None:intergenic 50.0%
CTTGGCACCTTCAATCACCT+TGG - Chr8:76014456-76014475 None:intergenic 50.0%
GCAATTATGAGGGTGAGGGT+TGG + Chr8:76014004-76014023 MsG0880046639.01.T01:intron 50.0%
GCCAAACAAAATACGGGGAC+TGG + Chr8:76015157-76015176 MsG0880046639.01.T01:CDS 50.0%
GCCAATAGCCTCATCAACCA+TGG + Chr8:76014475-76014494 MsG0880046639.01.T01:intron 50.0%
GGCAATGGAGATTACAGCCA+TGG + Chr8:76012565-76012584 MsG0880046639.01.T01:CDS 50.0%
GGTGGAGCAGACTATTGATC+AGG + Chr8:76012881-76012900 MsG0880046639.01.T01:intron 50.0%
GTGGAAGGAGATGGAAGAGA+AGG - Chr8:76012611-76012630 None:intergenic 50.0%
TAACACCCGCAGGATGATTC+TGG - Chr8:76015756-76015775 None:intergenic 50.0%
TCAGATCCTACCGTGATTGC+TGG + Chr8:76014512-76014531 MsG0880046639.01.T01:intron 50.0%
TCATGCTTACTAGTGCCCCT+GGG + Chr8:76015492-76015511 MsG0880046639.01.T01:intron 50.0%
TCCAGCTGTTCCAGCAATCA+CGG - Chr8:76014525-76014544 None:intergenic 50.0%
! CAACGTGTTGCTGAAGCTGT+AGG + Chr8:76012939-76012958 MsG0880046639.01.T01:CDS 50.0%
! GCAGCTCTAGCTTCATTTGG+AGG - Chr8:76012728-76012747 None:intergenic 50.0%
!! CAAGAAGCACTTCAGAGCTC+TGG + Chr8:76013071-76013090 MsG0880046639.01.T01:CDS 50.0%
!! CTTCTCTGAGGCTTCCAAGA+AGG + Chr8:76013046-76013065 MsG0880046639.01.T01:CDS 50.0%
!! GATGGCTTTTCTGGAGGCAA+AGG + Chr8:76015665-76015684 MsG0880046639.01.T01:CDS 50.0%
!! GGTTGATGAGGCTATTGGCT+TGG - Chr8:76014474-76014493 None:intergenic 50.0%
!!! GTTGGTGATGGCTTTTCTGG+AGG + Chr8:76015659-76015678 MsG0880046639.01.T01:CDS 50.0%
AAACCTCCTCTAACACCCGC+AGG - Chr8:76015766-76015785 None:intergenic 55.0%
ACCCGCAGGATGATTCTGGA+TGG - Chr8:76015752-76015771 None:intergenic 55.0%
ACCGTGATTGCTGGAACAGC+TGG + Chr8:76014521-76014540 MsG0880046639.01.T01:intron 55.0%
CACACTAACGGTGCGGTTAG+TGG - Chr8:76014066-76014085 None:intergenic 55.0%
CATGCTTACTAGTGCCCCTG+GGG + Chr8:76015493-76015512 MsG0880046639.01.T01:intron 55.0%
CTAACCGCACCGTTAGTGTG+TGG + Chr8:76014066-76014085 MsG0880046639.01.T01:intron 55.0%
CTGCTGCACAATTGGCAACG+CGG - Chr8:76012991-76013010 None:intergenic 55.0%
GAGATGGCAGACCAGATAGG+AGG - Chr8:76014575-76014594 None:intergenic 55.0%
GCTAGAACGCTAACAGGGCT+TGG + Chr8:76015617-76015636 MsG0880046639.01.T01:CDS 55.0%
GCTGTTCCAGCAATCACGGT+AGG - Chr8:76014521-76014540 None:intergenic 55.0%
GTCATGCTTACTAGTGCCCC+TGG + Chr8:76015491-76015510 MsG0880046639.01.T01:intron 55.0%
TGACATGACACCGACACGTG+AGG - Chr8:76015419-76015438 None:intergenic 55.0%
TGCTTCTCCAGCCTTCTCTG+AGG + Chr8:76013034-76013053 MsG0880046639.01.T01:CDS 55.0%
TGTCCAGCCTGCTGCACAAT+TGG - Chr8:76012999-76013018 None:intergenic 55.0%
TTAGCACTAGACGGAAGGCG+AGG - Chr8:76014862-76014881 None:intergenic 55.0%
TTGCCAATTGTGCAGCAGGC+TGG + Chr8:76012993-76013012 MsG0880046639.01.T01:CDS 55.0%
TTGGAAGCCTCAGAGAAGGC+TGG - Chr8:76013044-76013063 None:intergenic 55.0%
! CAGGTTCAGGTGGTTGGTTC+TGG + Chr8:76012900-76012919 MsG0880046639.01.T01:CDS 55.0%
! GCGGGTGTTAGAGGAGGTTT+TGG + Chr8:76015766-76015785 MsG0880046639.01.T01:CDS 55.0%
!! GCTTTTCTGGAGGCAAAGGG+TGG + Chr8:76015669-76015688 MsG0880046639.01.T01:CDS 55.0%
!! GTAGGGAGTGCTTTGAAGCC+TGG + Chr8:76012957-76012976 MsG0880046639.01.T01:CDS 55.0%
!! TGAGGGTGAGGGTTGGTTTC+AGG + Chr8:76014011-76014030 MsG0880046639.01.T01:intron 55.0%
CATCCTGCGGGTGTTAGAGG+AGG + Chr8:76015760-76015779 MsG0880046639.01.T01:CDS 60.0%
CGCGTTGCCAATTGTGCAGC+AGG + Chr8:76012989-76013008 MsG0880046639.01.T01:CDS 60.0%
CGGTGCGGTTAGTGGTGCAA+TGG - Chr8:76014058-76014077 None:intergenic 60.0%
TGTGCAGCAGGCTGGACAAG+AGG + Chr8:76013001-76013020 MsG0880046639.01.T01:CDS 60.0%
! GGCAACGCGGTATCGAAGCC+AGG - Chr8:76012978-76012997 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 76012442 76015966 76012442 ID=MsG0880046639.01;Name=MsG0880046639.01
Chr8 mRNA 76012442 76015966 76012442 ID=MsG0880046639.01.T01;Parent=MsG0880046639.01;Name=MsG0880046639.01.T01;_AED=0.37;_eAED=0.38;_QI=121|0.75|0.6|1|0.75|0.8|5|62|339
Chr8 exon 76012442 76012790 76012442 ID=MsG0880046639.01.T01:exon:32404;Parent=MsG0880046639.01.T01
Chr8 exon 76012882 76013153 76012882 ID=MsG0880046639.01.T01:exon:32405;Parent=MsG0880046639.01.T01
Chr8 exon 76014828 76014902 76014828 ID=MsG0880046639.01.T01:exon:32406;Parent=MsG0880046639.01.T01
Chr8 exon 76015145 76015276 76015145 ID=MsG0880046639.01.T01:exon:32407;Parent=MsG0880046639.01.T01
Chr8 exon 76015592 76015966 76015592 ID=MsG0880046639.01.T01:exon:32408;Parent=MsG0880046639.01.T01
Chr8 five_prime_UTR 76012442 76012562 76012442 ID=MsG0880046639.01.T01:five_prime_utr;Parent=MsG0880046639.01.T01
Chr8 CDS 76012563 76012790 76012563 ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8 CDS 76012882 76013153 76012882 ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8 CDS 76014828 76014902 76014828 ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8 CDS 76015145 76015276 76015145 ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8 CDS 76015592 76015904 76015592 ID=MsG0880046639.01.T01:cds;Parent=MsG0880046639.01.T01
Chr8 three_prime_UTR 76015905 76015966 76015905 ID=MsG0880046639.01.T01:three_prime_utr;Parent=MsG0880046639.01.T01
Gene Sequence

>MsG0880046639.01.T01

ATGGCAATGGAGATTACAGCCATGGCTTCACTTCCAACAACAAAACCTTCTCTTCCATCTCCTTCCACTTTACCTCACACAATCACCACCTTATCAAAACCTCAACTTAGACGCATAGCATTACCAACATCAACCACCATTTCACTACTTGCTCTTTTCACCCCTCCAAATGAAGCTAGAGCTGCTGTTAACATCTCCAAGGACCAAATTGTTTCTTCTCTTACACAAGTGGAGCAGACTATTGATCAGGTTCAGGTGGTTGGTTCTGGTTTTTTGGACTCAGCACAACGTGTTGCTGAAGCTGTAGGGAGTGCTTTGAAGCCTGGCTTCGATACCGCGTTGCCAATTGTGCAGCAGGCTGGACAAGAGGCTTTGAAAATTGCTTCTCCAGCCTTCTCTGAGGCTTCCAAGAAGGCTCAAGAAGCACTTCAGAGCTCTGGTCTTGATACCCAAACTGCTGCTAAGGTTTGCTTAATTCATTCAGTCTTGGGATTGGGACCGTCAGAGAAGGATAAGGACAAATCTGGTATTCCTCGCCTTCCGTCTAGTGCTAAAAACAAGATGGTTGCCATTCCATTGGAAGAAGTGCCAAACAAAATACGGGGACTGGTAAGGAATGTGAAGAGAGTGGAAGCTGAAATAGCAGCATTAAAGATTTCATATCTGAAGAAAATCAACAAAGGCACCAACATTGTGATCTTGGACTCGTACTCGGACTCGGCAAAGATAGTTGCTAGAACGCTAACAGGGCTTGGATTTAAGAACACATGGATCGTTGGTGATGGCTTTTCTGGAGGCAAAGGGTGGTTACAGAGTAGATTAGGAACAGATTCGTATAAATTTTCGTTTGCAGAGGTGTTGTCACCATCCAGAATCATCCTGCGGGTGTTAGAGGAGGTTTTGGAACAACCAGCAGACAATCTACTCAGAAACTTCTACCTGGGGCTGACTGAAATTCTTTTTCCTCACTCAACATTGAACTCTCGCAAATATATATATGTGAATGTGTGCCTTGATTAA

Protein sequence

>MsG0880046639.01.T01

MAMEITAMASLPTTKPSLPSPSTLPHTITTLSKPQLRRIALPTSTTISLLALFTPPNEARAAVNISKDQIVSSLTQVEQTIDQVQVVGSGFLDSAQRVAEAVGSALKPGFDTALPIVQQAGQEALKIASPAFSEASKKAQEALQSSGLDTQTAAKVCLIHSVLGLGPSEKDKDKSGIPRLPSSAKNKMVAIPLEEVPNKIRGLVRNVKRVEAEIAALKISYLKKINKGTNIVILDSYSDSAKIVARTLTGLGFKNTWIVGDGFSGGKGWLQSRLGTDSYKFSFAEVLSPSRIILRVLEEVLEQPADNLLRNFYLGLTEILFPHSTLNSRKYIYVNVCLD*