AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005924.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005924.01.T01 MTR_1g109630 99.029 206 2 0 1 206 1 206 5.08e-152 420
MsG0180005924.01.T01 MTR_8g099060 39.303 201 116 2 10 204 58 258 1.28e-49 162
MsG0180005924.01.T01 MTR_1g099500 40.415 193 109 2 10 196 51 243 2.48e-44 148
MsG0180005924.01.T01 MTR_8g028450 38.235 204 116 3 10 203 62 265 4.02e-44 148
MsG0180005924.01.T01 MTR_3g449880 35.484 186 114 2 10 189 43 228 3.18e-36 127
MsG0180005924.01.T01 MTR_5g090340 35.678 199 116 4 10 198 87 283 6.28e-35 125
MsG0180005924.01.T01 MTR_5g090340 35.678 199 116 4 10 198 90 286 7.07e-35 125
MsG0180005924.01.T01 MTR_3g449880 32.544 169 110 1 25 189 38 206 2.65e-28 106
MsG0180005924.01.T01 MTR_3g062910 34.132 167 106 1 14 176 53 219 1.00e-26 102
MsG0180005924.01.T01 MTR_4g014700 29.592 196 134 1 13 204 12 207 1.33e-21 88.6
MsG0180005924.01.T01 MTR_1g107445 28.426 197 137 1 14 206 8 204 2.19e-19 82.4
MsG0180005924.01.T01 MTR_6g012460 28.649 185 128 1 24 204 13 197 2.11e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005924.01.T01 AT3G18260 45.178 197 104 1 13 205 28 224 1.11e-59 187
MsG0180005924.01.T01 AT1G68230 45.833 192 102 1 15 204 22 213 2.64e-57 180
MsG0180005924.01.T01 AT4G11220 39.303 201 116 2 10 204 69 269 4.56e-52 169
MsG0180005924.01.T01 AT4G23630 38.806 201 117 2 10 204 73 273 1.62e-51 167
MsG0180005924.01.T01 AT4G23630 38.806 201 117 2 10 204 73 273 1.62e-51 167
MsG0180005924.01.T01 AT2G46170 38.500 200 117 2 10 203 52 251 1.92e-47 156
MsG0180005924.01.T01 AT5G41600 38.537 205 116 3 10 204 52 256 5.48e-46 152
MsG0180005924.01.T01 AT3G61560 36.500 200 121 2 10 203 52 251 3.75e-42 143
MsG0180005924.01.T01 AT3G61560 36.500 200 121 2 10 203 52 251 3.75e-42 143
MsG0180005924.01.T01 AT1G64090 35.678 199 118 3 10 198 48 246 5.64e-42 142
MsG0180005924.01.T01 AT1G64090 32.870 216 119 4 10 199 48 263 5.27e-38 132
MsG0180005924.01.T01 AT3G10260 32.143 196 129 1 13 204 50 245 2.24e-35 125
MsG0180005924.01.T01 AT3G10260 32.143 196 129 1 13 204 50 245 2.24e-35 125
MsG0180005924.01.T01 AT1G68230 46.715 137 71 1 15 149 22 158 2.47e-35 122
MsG0180005924.01.T01 AT3G10260 32.143 196 129 1 13 204 70 265 4.49e-35 125
MsG0180005924.01.T01 AT4G01230 35.784 204 120 4 2 197 44 244 5.70e-35 124
MsG0180005924.01.T01 AT4G01230 34.804 204 120 5 2 197 44 242 6.79e-32 116
MsG0180005924.01.T01 AT3G61560 37.671 146 85 2 10 149 52 197 4.36e-28 105
MsG0180005924.01.T01 AT2G46170 37.795 127 73 2 10 130 52 178 4.09e-24 94.7
MsG0180005924.01.T01 AT3G10915 25.854 205 146 2 5 203 20 224 2.33e-23 93.6
MsG0180005924.01.T01 AT3G10915 26.000 200 142 2 10 203 50 249 3.04e-23 94.0
MsG0180005924.01.T01 AT3G19460 28.141 199 123 5 16 206 14 200 5.13e-23 92.0
MsG0180005924.01.T01 AT3G19460 28.141 199 123 5 16 206 14 200 5.13e-23 92.0
MsG0180005924.01.T01 AT3G19460 28.141 199 123 5 16 206 14 200 5.13e-23 92.0
MsG0180005924.01.T01 AT3G10915 25.728 206 146 3 5 203 20 225 8.22e-22 89.4
MsG0180005924.01.T01 AT2G15280 24.742 194 142 1 15 204 5 198 2.41e-20 85.1
MsG0180005924.01.T01 AT3G10915 24.044 183 135 1 25 203 9 191 3.37e-18 79.3
MsG0180005924.01.T01 AT3G10915 24.044 183 135 1 25 203 10 192 3.85e-18 79.0
MsG0180005924.01.T01 AT3G19460 25.431 232 121 6 16 206 14 234 2.08e-17 77.8
MsG0180005924.01.T01 AT3G19460 25.431 232 121 6 16 206 14 234 2.08e-17 77.8
MsG0180005924.01.T01 AT3G10915 23.246 228 146 4 5 203 20 247 7.16e-17 76.6
MsG0180005924.01.T01 AT3G54120 29.545 176 115 3 3 172 1 173 9.60e-17 75.5
MsG0180005924.01.T01 AT2G01240 28.889 135 94 2 69 202 1 134 3.06e-14 67.4
MsG0180005924.01.T01 AT3G19460 24.554 224 117 6 24 206 6 218 1.09e-13 67.8
MsG0180005924.01.T01 AT3G19460 24.554 224 117 6 24 206 6 218 1.09e-13 67.8

Find 43 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGCTCATTCTCTTTATT+TGG 0.147832 1:-97635233 MsG0180005924.01.T01:CDS
TCCAATCAACCTGGTTTATT+TGG 0.194638 1:-97636253 MsG0180005924.01.T01:CDS
GAAGAGATTGTTCAACAAAT+TGG 0.245195 1:-97634371 MsG0180005924.01.T01:CDS
TCATACCGCTCATACATAAT+TGG 0.314636 1:+97634436 None:intergenic
CTATGGATCATGTCTACTAT+TGG 0.332384 1:-97634603 MsG0180005924.01.T01:CDS
ACCAAATAAACCAGGTTGAT+TGG 0.341184 1:+97636252 None:intergenic
ATGAATCTAACGGTAGAATC+TGG 0.349110 1:+97635045 None:intergenic
TTCAGACAATAGCTGGTCTA+TGG 0.360102 1:-97634620 MsG0180005924.01.T01:intron
TGGATTCTACAGTTCTCAAT+AGG 0.367654 1:-97634351 MsG0180005924.01.T01:CDS
ATTTCAAAATCATAGATATC+AGG 0.404128 1:+97635069 None:intergenic
TTTATTTGGTATAATGCAGC+TGG 0.406398 1:-97635219 MsG0180005924.01.T01:CDS
TGAACAATCTCTTCACGTCT+TGG 0.421418 1:+97634380 None:intergenic
AAATAAAGAGAATGAGCATA+AGG 0.427457 1:+97635235 None:intergenic
ATTGAATTTCAGACAATAGC+TGG 0.451267 1:-97634627 MsG0180005924.01.T01:intron
AATAAAGAGAATGAGCATAA+GGG 0.486688 1:+97635236 None:intergenic
AGACCACTTCACGCAGTCCT+TGG 0.495322 1:-97636229 MsG0180005924.01.T01:CDS
CCAGGTTGATTGGAACGGAT+TGG 0.508121 1:+97636262 None:intergenic
CCACTTCACGCAGTCCTTGG+TGG 0.509588 1:-97636226 MsG0180005924.01.T01:CDS
GAAAACAACGGCAGCAATTG+TGG 0.515778 1:-97635337 MsG0180005924.01.T01:CDS
ATGCAGCTGGATTAATCACT+TGG 0.517496 1:-97635206 MsG0180005924.01.T01:intron
AAAAGTTCAACTTGTTCTTG+AGG 0.520276 1:-97635017 MsG0180005924.01.T01:CDS
CAGTTCTCAATAGGATTCCA+AGG 0.520634 1:-97634342 MsG0180005924.01.T01:CDS
TGAATCTAACGGTAGAATCT+GGG 0.523175 1:+97635046 None:intergenic
AGATCTTAGATTCTTCTTTG+TGG 0.523221 1:-97634968 MsG0180005924.01.T01:intron
ACAACGGCAGCAATTGTGGC+TGG 0.528525 1:-97635333 MsG0180005924.01.T01:CDS
CCAATCCGTTCCAATCAACC+TGG 0.539807 1:-97636262 MsG0180005924.01.T01:CDS
ACATAATTGGAAGTGTCACC+AGG 0.546032 1:+97634449 None:intergenic
GTGGACTATCTAGCAAGTAA+AGG 0.551485 1:-97634406 MsG0180005924.01.T01:CDS
GAATGAGCATAAGGGCTATG+AGG 0.566119 1:+97635244 None:intergenic
GCATAAGGGCTATGAGGATG+TGG 0.569062 1:+97635250 None:intergenic
CCACCAAGGACTGCGTGAAG+TGG 0.572676 1:+97636226 None:intergenic
ATAAACCAGGTTGATTGGAA+CGG 0.576581 1:+97636257 None:intergenic
CAGTTGCTGATATCTTGCTA+TGG 0.577932 1:-97635368 MsG0180005924.01.T01:CDS
GGTTTGGTTTCTCTTTGAAG+TGG 0.581573 1:-97635301 MsG0180005924.01.T01:CDS
AGTTCTCAATAGGATTCCAA+GGG 0.601630 1:-97634341 MsG0180005924.01.T01:CDS
CACTTCCAATTATGTATGAG+CGG 0.613668 1:-97634441 MsG0180005924.01.T01:CDS
CTTCACGCAGTCCTTGGTGG+AGG 0.617691 1:-97636223 MsG0180005924.01.T01:CDS
GTATGAGCGGTATGAACATG+AGG 0.680175 1:-97634428 MsG0180005924.01.T01:CDS
TCTTACTCTTTCCTCCACCA+AGG 0.691240 1:+97636212 None:intergenic
AGTGGTCTACCAAATAAACC+AGG 0.692119 1:+97636244 None:intergenic
ATGGAAAGACATGAAAACAA+CGG 0.698215 1:-97635349 MsG0180005924.01.T01:CDS
TGAGCGGTATGAACATGAGG+TGG 0.701805 1:-97634425 MsG0180005924.01.T01:CDS
GTTCTCAATAGGATTCCAAG+GGG 0.759037 1:-97634340 MsG0180005924.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGATAAAAACTTAT+AGG - Chr1:97635840-97635859 MsG0180005924.01.T01:intron 10.0%
!! ATATAGTCAAAAAAATTTAT+AGG + Chr1:97635756-97635775 None:intergenic 10.0%
!! ATATTTAGAAATTAGATTAA+GGG + Chr1:97634514-97634533 None:intergenic 10.0%
!! TACTAAAAATGAAAATTAAT+AGG + Chr1:97634791-97634810 None:intergenic 10.0%
!! TATAGTCAAAAAAATTTATA+GGG + Chr1:97635755-97635774 None:intergenic 10.0%
!! TATATTTAGAAATTAGATTA+AGG + Chr1:97634515-97634534 None:intergenic 10.0%
!!! AAAAAATAATTTTTTTTCGA+GGG + Chr1:97634647-97634666 None:intergenic 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + Chr1:97634741-97634760 None:intergenic 10.0%
!!! ACATATTCATAATTTTTATA+AGG + Chr1:97635412-97635431 None:intergenic 10.0%
!!! TAAAAAATAATTTTTTTTCG+AGG + Chr1:97634648-97634667 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + Chr1:97634742-97634761 None:intergenic 10.0%
!!! TTTGATAGTAAATATTTAAT+AGG - Chr1:97634453-97634472 MsG0180005924.01.T01:CDS 10.0%
!! AAATAAGATAGCATAAATTA+TGG - Chr1:97635868-97635887 MsG0180005924.01.T01:intron 15.0%
!! AACAAATTAATTCAAATCAA+AGG + Chr1:97635914-97635933 None:intergenic 15.0%
!! AATAAGATAGCATAAATTAT+GGG - Chr1:97635869-97635888 MsG0180005924.01.T01:intron 15.0%
!! ATAGTAAATATTTAATAGGT+TGG - Chr1:97634457-97634476 MsG0180005924.01.T01:CDS 15.0%
!! TATTTAGAAATTAGATTAAG+GGG + Chr1:97634513-97634532 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + Chr1:97634740-97634759 None:intergenic 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - Chr1:97635052-97635071 MsG0180005924.01.T01:CDS 15.0%
!!! TATATTTTATTTAGTACATG+TGG + Chr1:97635159-97635178 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - Chr1:97634881-97634900 MsG0180005924.01.T01:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+CGG - Chr1:97634536-97634555 MsG0180005924.01.T01:intron 15.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + Chr1:97635682-97635701 None:intergenic 20.0%
!! ATAAGATAGCATAAATTATG+GGG - Chr1:97635870-97635889 MsG0180005924.01.T01:intron 20.0%
!! ATTTAGAAATTAGATTAAGG+GGG + Chr1:97634512-97634531 None:intergenic 20.0%
!! ATTTCAAAATCATAGATATC+AGG + Chr1:97635511-97635530 None:intergenic 20.0%
!! CTAAAACAAGATTAAATGTA+TGG + Chr1:97634717-97634736 None:intergenic 20.0%
!! TTTATCAAAAAAATGTAAGC+GGG - Chr1:97634537-97634556 MsG0180005924.01.T01:intron 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - Chr1:97635583-97635602 MsG0180005924.01.T01:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - Chr1:97635584-97635603 MsG0180005924.01.T01:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - Chr1:97634569-97634588 MsG0180005924.01.T01:CDS 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + Chr1:97635545-97635564 None:intergenic 20.0%
!!! GCATCTTTTATAAAAATAGA+GGG - Chr1:97635783-97635802 MsG0180005924.01.T01:intron 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - Chr1:97635057-97635076 MsG0180005924.01.T01:CDS 20.0%
! AAAAATAAGGCTTCTGAATA+GGG + Chr1:97635440-97635459 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + Chr1:97635345-97635364 None:intergenic 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - Chr1:97635809-97635828 MsG0180005924.01.T01:intron 25.0%
! AATAAAGAGAATGAGCATAA+GGG + Chr1:97635344-97635363 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + Chr1:97635752-97635771 None:intergenic 25.0%
! CACCAAATGTTACAAAAATA+AGG + Chr1:97635453-97635472 None:intergenic 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - Chr1:97634897-97634916 MsG0180005924.01.T01:intron 25.0%
! TTATGCTCATTCTCTTTATT+TGG - Chr1:97635344-97635363 MsG0180005924.01.T01:CDS 25.0%
!! CGCATCTTTTATAAAAATAG+AGG - Chr1:97635782-97635801 MsG0180005924.01.T01:intron 25.0%
!! GTAAATATTTAATAGGTTGG+TGG - Chr1:97634460-97634479 MsG0180005924.01.T01:CDS 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - Chr1:97635448-97635467 MsG0180005924.01.T01:intron 25.0%
!!! ATTTTCATTTTTAGTAGTCG+TGG - Chr1:97634795-97634814 MsG0180005924.01.T01:intron 25.0%
AGATCTTAGATTCTTCTTTG+TGG - Chr1:97635609-97635628 MsG0180005924.01.T01:intron 30.0%
ATGGAAAGACATGAAAACAA+CGG - Chr1:97635228-97635247 MsG0180005924.01.T01:CDS 30.0%
ATTAAGAAGAGTTCACTCAA+AGG + Chr1:97634990-97635009 None:intergenic 30.0%
ATTGAATTTCAGACAATAGC+TGG - Chr1:97635950-97635969 MsG0180005924.01.T01:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + Chr1:97635441-97635460 None:intergenic 30.0%
CTTCTTAAATAAAGACGAGA+CGG - Chr1:97634923-97634942 MsG0180005924.01.T01:intron 30.0%
GAAGAGATTGTTCAACAAAT+TGG - Chr1:97636206-97636225 MsG0180005924.01.T01:intron 30.0%
GAGGTGAGAATAATTGAAAA+TGG + Chr1:97635649-97635668 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + Chr1:97635184-97635203 None:intergenic 30.0%
TTATTTATGTGTTGCATTGC+AGG - Chr1:97635479-97635498 MsG0180005924.01.T01:intron 30.0%
TTTATTTGGTATAATGCAGC+TGG - Chr1:97635358-97635377 MsG0180005924.01.T01:CDS 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - Chr1:97635560-97635579 MsG0180005924.01.T01:intron 30.0%
! TACTTTTATATATGGGTGGT+TGG - Chr1:97634573-97634592 MsG0180005924.01.T01:CDS 30.0%
!!! GTGGCTTTTTTTCTAAAACT+TGG + Chr1:97635140-97635159 None:intergenic 30.0%
AGAAAAGAAAATGGTCTCAG+TGG + Chr1:97635673-97635692 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + Chr1:97634771-97634790 None:intergenic 35.0%
AGTTCTCAATAGGATTCCAA+GGG - Chr1:97636236-97636255 MsG0180005924.01.T01:CDS 35.0%
ATGAACTAACCCACATCAAT+TGG + Chr1:97635038-97635057 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + Chr1:97635535-97635554 None:intergenic 35.0%
CAAGAATACACAACATAGCA+TGG + Chr1:97636093-97636112 None:intergenic 35.0%
CACTTCCAATTATGTATGAG+CGG - Chr1:97636136-97636155 MsG0180005924.01.T01:intron 35.0%
CTATGGATCATGTCTACTAT+TGG - Chr1:97635974-97635993 MsG0180005924.01.T01:intron 35.0%
GCATGAAAACGTGATACAAA+AGG + Chr1:97634408-97634427 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - Chr1:97635813-97635832 MsG0180005924.01.T01:intron 35.0%
GTCTCATGTTTGAATTCTCT+TGG - Chr1:97635010-97635029 MsG0180005924.01.T01:CDS 35.0%
TAGGCAAATATCTTTCCACT+AGG + Chr1:97634772-97634791 None:intergenic 35.0%
TCATACCGCTCATACATAAT+TGG + Chr1:97636144-97636163 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - Chr1:97634324-97634343 MsG0180005924.01.T01:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + Chr1:97635534-97635553 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - Chr1:97636226-97636245 MsG0180005924.01.T01:CDS 35.0%
! AAGGGGGTACATATTGTATA+AGG + Chr1:97634496-97634515 None:intergenic 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - Chr1:97635255-97635274 MsG0180005924.01.T01:CDS 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + Chr1:97635819-97635838 None:intergenic 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + Chr1:97634328-97634347 None:intergenic 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + Chr1:97634323-97634342 None:intergenic 35.0%
AAATATCTTTCCACTAGGGC+TGG + Chr1:97634767-97634786 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + Chr1:97634336-97634355 None:intergenic 40.0%
ATGCAGCTGGATTAATCACT+TGG - Chr1:97635371-97635390 MsG0180005924.01.T01:intron 40.0%
CAGTTCTCAATAGGATTCCA+AGG - Chr1:97636235-97636254 MsG0180005924.01.T01:CDS 40.0%
CAGTTGCTGATATCTTGCTA+TGG - Chr1:97635209-97635228 MsG0180005924.01.T01:CDS 40.0%
CATCATTGTATCAACCCATG+TGG + Chr1:97634953-97634972 None:intergenic 40.0%
CTCTTGGTACCAATTGATGT+GGG - Chr1:97635026-97635045 MsG0180005924.01.T01:CDS 40.0%
GTTCTCAATAGGATTCCAAG+GGG - Chr1:97636237-97636256 MsG0180005924.01.T01:CDS 40.0%
TCTCTTGGTACCAATTGATG+TGG - Chr1:97635025-97635044 MsG0180005924.01.T01:CDS 40.0%
TGAACAATCTCTTCACGTCT+TGG + Chr1:97636200-97636219 None:intergenic 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + Chr1:97636264-97636283 None:intergenic 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - Chr1:97635276-97635295 MsG0180005924.01.T01:CDS 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - Chr1:97636171-97636190 MsG0180005924.01.T01:intron 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - Chr1:97635105-97635124 MsG0180005924.01.T01:intron 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - Chr1:97635260-97635279 MsG0180005924.01.T01:CDS 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - Chr1:97635957-97635976 MsG0180005924.01.T01:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - Chr1:97636110-97636129 MsG0180005924.01.T01:intron 40.0%
! TTTCGAGGGATTTAAAGCGA+GGG + Chr1:97634633-97634652 None:intergenic 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + Chr1:97636131-97636150 None:intergenic 40.0%
!! ATTTAAAGCGAGGGTTTTGG+TGG + Chr1:97634624-97634643 None:intergenic 40.0%
!! TTTTCGAGGGATTTAAAGCG+AGG + Chr1:97634634-97634653 None:intergenic 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - Chr1:97635111-97635130 MsG0180005924.01.T01:intron 40.0%
AGAAAATGGTCTCAGTGGAG+AGG + Chr1:97635668-97635687 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - Chr1:97634754-97634773 MsG0180005924.01.T01:intron 45.0%
CAATCCATTGTCAGCTTGCA+GGG + Chr1:97635084-97635103 None:intergenic 45.0%
CTCCAAAACTGACTAAACCG+AGG + Chr1:97635110-97635129 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - Chr1:97635240-97635259 MsG0180005924.01.T01:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + Chr1:97635336-97635355 None:intergenic 45.0%
GTATGAGCGGTATGAACATG+AGG - Chr1:97636149-97636168 MsG0180005924.01.T01:intron 45.0%
TATATGGGTGGTTGGAAAGC+AGG - Chr1:97634581-97634600 MsG0180005924.01.T01:CDS 45.0%
TCTTACTCTTTCCTCCACCA+AGG + Chr1:97634368-97634387 None:intergenic 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + Chr1:97636255-97636274 None:intergenic 45.0%
!! CTGACAATGGATTGGTACCT+CGG - Chr1:97635090-97635109 MsG0180005924.01.T01:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + Chr1:97634627-97634646 None:intergenic 45.0%
!! CATATTAATAATTAATAATA+AGG + Chr1:97636070-97636089 None:intergenic 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - Chr1:97634566-97634585 MsG0180005924.01.T01:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + Chr1:97636043-97636062 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - Chr1:97636044-97636063 MsG0180005924.01.T01:intron 5.0%
!!! TAAAATTTTACTTTTATATA+TGG - Chr1:97634565-97634584 MsG0180005924.01.T01:intron 5.0%
AGACGAGACGGAAATCCACA+TGG - Chr1:97634935-97634954 MsG0180005924.01.T01:intron 50.0%
CCAATCCATTGTCAGCTTGC+AGG + Chr1:97635085-97635104 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - Chr1:97634315-97634334 MsG0180005924.01.T01:CDS 50.0%
CCTGCAAGCTGACAATGGAT+TGG - Chr1:97635082-97635101 MsG0180005924.01.T01:intron 50.0%
GACGAGACGGAAATCCACAT+GGG - Chr1:97634936-97634955 MsG0180005924.01.T01:intron 50.0%
GCATAAGGGCTATGAGGATG+TGG + Chr1:97635330-97635349 None:intergenic 50.0%
TGAGCGGTATGAACATGAGG+TGG - Chr1:97636152-97636171 MsG0180005924.01.T01:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - Chr1:97634593-97634612 MsG0180005924.01.T01:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - Chr1:97634592-97634611 MsG0180005924.01.T01:CDS 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + Chr1:97634318-97634337 None:intergenic 50.0%
ACAACGGCAGCAATTGTGGC+TGG - Chr1:97635244-97635263 MsG0180005924.01.T01:CDS 55.0%
AGACCACTTCACGCAGTCCT+TGG - Chr1:97634348-97634367 MsG0180005924.01.T01:CDS 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - Chr1:97634598-97634617 MsG0180005924.01.T01:CDS 55.0%
TGGACCCTGCAAGCTGACAA+TGG - Chr1:97635077-97635096 MsG0180005924.01.T01:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - Chr1:97634585-97634604 MsG0180005924.01.T01:CDS 55.0%
CCACCAAGGACTGCGTGAAG+TGG + Chr1:97634354-97634373 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - Chr1:97634351-97634370 MsG0180005924.01.T01:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - Chr1:97634354-97634373 MsG0180005924.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 97634312 97636287 97634312 ID=MsG0180005924.01;Name=MsG0180005924.01
Chr1 mRNA 97634312 97636287 97634312 ID=MsG0180005924.01.T01;Parent=MsG0180005924.01;Name=MsG0180005924.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0.75|0.8|5|0|206
Chr1 exon 97636218 97636287 97636218 ID=MsG0180005924.01.T01:exon:50686;Parent=MsG0180005924.01.T01
Chr1 exon 97635207 97635387 97635207 ID=MsG0180005924.01.T01:exon:50685;Parent=MsG0180005924.01.T01
Chr1 exon 97634969 97635098 97634969 ID=MsG0180005924.01.T01:exon:50684;Parent=MsG0180005924.01.T01
Chr1 exon 97634568 97634637 97634568 ID=MsG0180005924.01.T01:exon:50683;Parent=MsG0180005924.01.T01
Chr1 exon 97634312 97634481 97634312 ID=MsG0180005924.01.T01:exon:50682;Parent=MsG0180005924.01.T01
Chr1 CDS 97636218 97636287 97636218 ID=MsG0180005924.01.T01:cds;Parent=MsG0180005924.01.T01
Chr1 CDS 97635207 97635387 97635207 ID=MsG0180005924.01.T01:cds;Parent=MsG0180005924.01.T01
Chr1 CDS 97634969 97635098 97634969 ID=MsG0180005924.01.T01:cds;Parent=MsG0180005924.01.T01
Chr1 CDS 97634568 97634637 97634568 ID=MsG0180005924.01.T01:cds;Parent=MsG0180005924.01.T01
Chr1 CDS 97634312 97634481 97634312 ID=MsG0180005924.01.T01:cds;Parent=MsG0180005924.01.T01
Gene Sequence

>MsG0180005924.01.T01

ATGCCAATCCGTTCCAATCAACCTGGTTTATTTGGTAGACCACTTCACGCAGTCCTTGGTGGAGGAAAGATTGCTGATATCTTGCTATGGAAAGACATGAAAACAACGGCAGCAATTGTGGCTGGATTTTCAATGGTTTGGTTTCTCTTTGAAGTGGTTGAATATAATCTTGTTACTCTGCTATGCCACATCCTCATAGCCCTTATGCTCATTCTCTTTATTTGGTATAATGCAGCTGGATTAATCACTTGGAAACTTCCTGATATCTATGATTTTGAAATCCCAGATTCTACCGTTAGATTCATTCATAAAAAGTTCAACTTGTTCTTGAGGAAATTTTATGACATTTCAACTGGGAAAGATCTTAGATTCTTCTTTGTGACAATAGCTGGTCTATGGATCATGTCTACTATTGGAAATTTCTTCAGCACTGTCAATTTACTATATACAACATTTTTGTGCCTGGTGACACTTCCAATTATGTATGAGCGGTATGAACATGAGGTGGACTATCTAGCAAGTAAAGGAAACCAAGACGTGAAGAGATTGTTCAACAAATTGGATTCTACAGTTCTCAATAGGATTCCAAGGGGACCTGTGAAAGAAAAGAAGTACCGATGA
Protein sequence

>MsG0180005924.01.T01

MPIRSNQPGLFGRPLHAVLGGGKIADILLWKDMKTTAAIVAGFSMVWFLFEVVEYNLVTLLCHILIALMLILFIWYNAAGLITWKLPDIYDFEIPDSTVRFIHKKFNLFLRKFYDISTGKDLRFFFVTIAGLWIMSTIGNFFSTVNLLYTTFLCLVTLPIMYERYEHEVDYLASKGNQDVKRLFNKLDSTVLNRIPRGPVKEKKYR*