Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017421.01.T01 | GAU23159.1 | 78.068 | 766 | 64 | 5 | 1 | 662 | 64 | 829 | 0 | 1219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017421.01.T01 | O04865 | 56.177 | 769 | 220 | 9 | 3 | 662 | 49 | 809 | 0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017421.01.T01 | A0A396J1N9 | 84.162 | 764 | 19 | 3 | 1 | 662 | 63 | 826 | 0.0 | 1303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000376.01 | MsG0380017421.01 | 0.810913 | 9.097807e-51 | 5.554394e-48 |
| MsG0180003360.01 | MsG0380017421.01 | 0.808018 | 3.806390e-50 | 2.152441e-47 |
| MsG0180004098.01 | MsG0380017421.01 | 0.820881 | 5.426250e-53 | 4.346812e-50 |
| MsG0180004102.01 | MsG0380017421.01 | 0.854172 | 1.468881e-61 | 3.252552e-58 |
| MsG0180005924.01 | MsG0380017421.01 | 0.832150 | 1.113660e-55 | 1.234118e-52 |
| MsG0380013636.01 | MsG0380017421.01 | 0.845287 | 4.462272e-59 | 7.400714e-56 |
| MsG0380015736.01 | MsG0380017421.01 | 0.835983 | 1.221114e-56 | 1.517925e-53 |
| MsG0380016480.01 | MsG0380017421.01 | 0.835816 | 1.346397e-56 | 1.665105e-53 |
| MsG0380017421.01 | MsG0480019124.01 | 0.800105 | 1.684802e-48 | 7.778763e-46 |
| MsG0380017421.01 | MsG0480022036.01 | 0.820866 | 5.470164e-53 | 4.380272e-50 |
| MsG0380017421.01 | MsG0580027461.01 | 0.827795 | 1.284484e-54 | 1.252872e-51 |
| MsG0380017421.01 | MsG0580028884.01 | 0.829657 | 4.553966e-55 | 4.690945e-52 |
| MsG0380017421.01 | MsG0580029494.01 | 0.860365 | 2.172802e-63 | 5.924826e-60 |
| MsG0380017421.01 | MsG0780037371.01 | 0.881854 | 1.697884e-70 | 1.010822e-66 |
| MsG0380017421.01 | MsG0780038655.01 | 0.817607 | 3.020739e-52 | 2.210056e-49 |
| MsG0380017421.01 | MsG0780038952.01 | 0.815254 | 1.015751e-51 | 6.967438e-49 |
| MsG0380017421.01 | MsG0880042098.01 | 0.826097 | 3.271074e-54 | 3.037895e-51 |
| MsG0380017421.01 | MsG0880043855.01 | 0.802727 | 4.890226e-49 | 2.413302e-46 |
| MsG0380017421.01 | MsG0880043920.01 | 0.834712 | 2.557736e-56 | 3.059842e-53 |
| MsG0380017421.01 | MsG0880046319.01 | 0.810879 | 9.256096e-51 | 5.645757e-48 |
| MsG0380017421.01 | MsG0880046940.01 | 0.877456 | 6.196212e-69 | 3.117538e-65 |
| MsG0380017421.01 | MsG0880047228.01 | 0.870353 | 1.555741e-66 | 6.032635e-63 |
| MsG0280006924.01 | MsG0380017421.01 | 0.839468 | 1.556053e-57 | 2.150858e-54 |
| MsG0280007092.01 | MsG0380017421.01 | 0.812479 | 4.152541e-51 | 2.643245e-48 |
| MsG0280008740.01 | MsG0380017421.01 | 0.837850 | 4.076043e-57 | 5.362549e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017421.01.T01 | MTR_3g107320 | 83.770 | 764 | 22 | 3 | 1 | 662 | 63 | 826 | 0.0 | 1295 |
| MsG0380017421.01.T01 | MTR_3g107360 | 61.140 | 772 | 181 | 12 | 3 | 662 | 58 | 822 | 0.0 | 924 |
| MsG0380017421.01.T01 | MTR_2g103730 | 56.753 | 770 | 214 | 10 | 3 | 662 | 49 | 809 | 0.0 | 859 |
| MsG0380017421.01.T01 | MTR_4g010650 | 56.193 | 767 | 222 | 9 | 3 | 662 | 49 | 808 | 0.0 | 848 |
| MsG0380017421.01.T01 | MTR_7g075910 | 40.832 | 769 | 319 | 15 | 4 | 651 | 351 | 1104 | 0.0 | 563 |
| MsG0380017421.01.T01 | MTR_8g033080 | 40.181 | 774 | 322 | 15 | 4 | 651 | 281 | 1039 | 0.0 | 555 |
| MsG0380017421.01.T01 | MTR_3g114840 | 38.994 | 795 | 333 | 18 | 4 | 662 | 73 | 851 | 0.0 | 538 |
| MsG0380017421.01.T01 | MTR_8g088690 | 39.201 | 801 | 315 | 18 | 4 | 662 | 72 | 842 | 1.18e-180 | 535 |
| MsG0380017421.01.T01 | MTR_5g011050 | 38.571 | 770 | 336 | 16 | 4 | 651 | 90 | 844 | 5.83e-179 | 531 |
| MsG0380017421.01.T01 | MTR_5g023050 | 36.160 | 802 | 354 | 15 | 4 | 662 | 86 | 872 | 2.08e-177 | 527 |
| MsG0380017421.01.T01 | MTR_5g011060 | 38.182 | 770 | 339 | 16 | 4 | 651 | 84 | 838 | 7.04e-177 | 525 |
| MsG0380017421.01.T01 | MTR_2g100250 | 38.165 | 752 | 341 | 19 | 4 | 662 | 36 | 756 | 3.63e-158 | 474 |
| MsG0380017421.01.T01 | MTR_3g114840 | 37.393 | 698 | 290 | 15 | 4 | 565 | 73 | 759 | 6.53e-146 | 444 |
| MsG0380017421.01.T01 | MTR_8g016160 | 36.962 | 744 | 347 | 22 | 4 | 662 | 39 | 745 | 1.43e-140 | 428 |
| MsG0380017421.01.T01 | MTR_8g033080 | 39.677 | 557 | 242 | 10 | 4 | 477 | 281 | 826 | 2.62e-125 | 392 |
| MsG0380017421.01.T01 | MTR_5g023040 | 50.000 | 68 | 30 | 1 | 243 | 310 | 806 | 869 | 1.36e-15 | 81.3 |
| MsG0380017421.01.T01 | MTR_1g083620 | 28.889 | 225 | 107 | 8 | 155 | 346 | 380 | 584 | 1.61e-14 | 77.8 |
| MsG0380017421.01.T01 | MTR_1g083620 | 28.889 | 225 | 107 | 8 | 155 | 346 | 120 | 324 | 2.47e-14 | 77.0 |
| MsG0380017421.01.T01 | MTR_2g435560 | 28.085 | 235 | 123 | 10 | 155 | 357 | 381 | 601 | 2.58e-11 | 67.8 |
| MsG0380017421.01.T01 | MTR_2g435560 | 28.205 | 234 | 124 | 9 | 155 | 357 | 246 | 466 | 3.22e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017421.01.T01 | AT3G15730 | 55.253 | 771 | 224 | 9 | 3 | 662 | 50 | 810 | 0.0 | 844 |
| MsG0380017421.01.T01 | AT1G52570 | 54.156 | 770 | 234 | 11 | 3 | 662 | 50 | 810 | 0.0 | 817 |
| MsG0380017421.01.T01 | AT1G52570 | 54.156 | 770 | 234 | 11 | 3 | 662 | 50 | 810 | 0.0 | 817 |
| MsG0380017421.01.T01 | AT1G52570 | 54.156 | 770 | 234 | 11 | 3 | 662 | 50 | 810 | 0.0 | 817 |
| MsG0380017421.01.T01 | AT5G25370 | 53.394 | 766 | 245 | 10 | 3 | 662 | 61 | 820 | 0.0 | 801 |
| MsG0380017421.01.T01 | AT5G25370 | 53.394 | 766 | 245 | 10 | 3 | 662 | 61 | 820 | 0.0 | 801 |
| MsG0380017421.01.T01 | AT5G25370 | 53.394 | 766 | 245 | 10 | 3 | 662 | 61 | 820 | 0.0 | 801 |
| MsG0380017421.01.T01 | AT5G25370 | 53.217 | 746 | 237 | 10 | 23 | 662 | 6 | 745 | 0.0 | 775 |
| MsG0380017421.01.T01 | AT4G11830 | 39.097 | 775 | 330 | 16 | 4 | 651 | 87 | 846 | 0.0 | 553 |
| MsG0380017421.01.T01 | AT4G11830 | 39.097 | 775 | 330 | 16 | 4 | 651 | 55 | 814 | 0.0 | 553 |
| MsG0380017421.01.T01 | AT2G42010 | 39.272 | 769 | 332 | 14 | 4 | 651 | 319 | 1073 | 0.0 | 552 |
| MsG0380017421.01.T01 | AT4G11840 | 38.817 | 778 | 329 | 16 | 4 | 651 | 96 | 856 | 0.0 | 545 |
| MsG0380017421.01.T01 | AT4G11850 | 38.760 | 774 | 334 | 15 | 4 | 651 | 89 | 848 | 0.0 | 545 |
| MsG0380017421.01.T01 | AT4G00240 | 39.012 | 769 | 334 | 14 | 4 | 651 | 128 | 882 | 0.0 | 542 |
| MsG0380017421.01.T01 | AT4G00240 | 39.012 | 769 | 334 | 14 | 4 | 651 | 163 | 917 | 0.0 | 542 |
| MsG0380017421.01.T01 | AT4G00240 | 39.012 | 769 | 334 | 14 | 4 | 651 | 11 | 765 | 0.0 | 542 |
| MsG0380017421.01.T01 | AT4G11840 | 38.372 | 774 | 308 | 15 | 4 | 651 | 96 | 826 | 7.59e-180 | 532 |
| MsG0380017421.01.T01 | AT4G35790 | 37.831 | 793 | 344 | 14 | 4 | 662 | 80 | 857 | 6.52e-179 | 531 |
| MsG0380017421.01.T01 | AT4G35790 | 37.687 | 804 | 341 | 16 | 4 | 662 | 80 | 868 | 1.97e-176 | 525 |
| MsG0380017421.01.T01 | AT1G55180 | 37.467 | 758 | 339 | 20 | 4 | 662 | 19 | 740 | 1.25e-158 | 474 |
| MsG0380017421.01.T01 | AT1G55180 | 37.467 | 758 | 339 | 20 | 4 | 662 | 41 | 762 | 3.69e-158 | 474 |
| MsG0380017421.01.T01 | AT2G42010 | 39.832 | 595 | 267 | 10 | 4 | 517 | 319 | 903 | 6.78e-139 | 434 |
| MsG0380017421.01.T01 | AT2G42010 | 43.030 | 165 | 84 | 4 | 488 | 651 | 943 | 1098 | 3.85e-36 | 146 |
| MsG0380017421.01.T01 | AT4G11830 | 38.998 | 559 | 252 | 11 | 4 | 484 | 87 | 634 | 2.31e-129 | 396 |
| MsG0380017421.01.T01 | AT4G35790 | 36.661 | 611 | 276 | 10 | 4 | 514 | 80 | 679 | 1.56e-128 | 395 |
| MsG0380017421.01.T01 | AT4G11830 | 39.114 | 542 | 241 | 11 | 4 | 467 | 87 | 617 | 5.21e-125 | 384 |
| MsG0380017421.01.T01 | AT3G05630 | 24.748 | 695 | 313 | 28 | 81 | 607 | 304 | 956 | 5.91e-26 | 114 |
| MsG0380017421.01.T01 | AT3G16785 | 30.918 | 207 | 95 | 7 | 170 | 346 | 389 | 577 | 5.66e-13 | 73.2 |
| MsG0380017421.01.T01 | AT3G16785 | 30.918 | 207 | 95 | 7 | 170 | 346 | 389 | 577 | 5.75e-13 | 72.8 |
| MsG0380017421.01.T01 | AT3G16785 | 30.918 | 207 | 95 | 7 | 170 | 346 | 389 | 577 | 5.75e-13 | 72.8 |
| MsG0380017421.01.T01 | AT3G16785 | 30.918 | 207 | 95 | 7 | 170 | 346 | 389 | 577 | 6.63e-13 | 72.8 |
| MsG0380017421.01.T01 | AT3G16785 | 30.918 | 207 | 95 | 7 | 170 | 346 | 389 | 577 | 6.77e-13 | 72.8 |
| MsG0380017421.01.T01 | AT3G16785 | 30.918 | 207 | 95 | 7 | 170 | 346 | 389 | 577 | 6.77e-13 | 72.8 |
Find 146 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATCACCTGGGAAATT+TGG | 0.100944 | 3:+96099058 | None:intergenic |
| CCAATCGTTAACAAAATTTA+AGG | 0.103000 | 3:+96097193 | None:intergenic |
| TTAATGCAATTCAAACTTTC+TGG | 0.122895 | 3:+96097593 | None:intergenic |
| TTGTATTTGAACATGGATTT+TGG | 0.185371 | 3:+96099800 | None:intergenic |
| GCTTGAACTGAAGCACTTTC+AGG | 0.203277 | 3:+96098294 | None:intergenic |
| GAAAGGTTTCATTCCATTTC+GGG | 0.221154 | 3:+96100000 | None:intergenic |
| CCCATTGGAGCGACTCTAAT+TGG | 0.224022 | 3:-96099921 | MsG0380017421.01.T01:CDS |
| AGCAGTTATGGTTCCATTAT+TGG | 0.224317 | 3:+96097466 | None:intergenic |
| AATCCATATATTTGTCCTTT+TGG | 0.234668 | 3:+96097677 | None:intergenic |
| CATTGAAAATCAGTATTTCT+AGG | 0.239444 | 3:-96098474 | MsG0380017421.01.T01:intron |
| ATCGATGCTGGTGCTGCTTC+TGG | 0.242139 | 3:-96098620 | MsG0380017421.01.T01:CDS |
| GTCTATTACTGGTGGCTATA+TGG | 0.261291 | 3:+96097702 | None:intergenic |
| CATCTTGGTAAAGAGTAATT+TGG | 0.273836 | 3:+96099679 | None:intergenic |
| TGAAAGGTTTCATTCCATTT+CGG | 0.287963 | 3:+96099999 | None:intergenic |
| TAGATCGCACTATAACATTA+AGG | 0.291041 | 3:-96097098 | MsG0380017421.01.T01:three_prime_UTR |
| CCAACAGAAGCCGCTGAAAA+AGG | 0.298342 | 3:-96098584 | MsG0380017421.01.T01:intron |
| CCATTATTGGTTACTTGTAT+TGG | 0.306443 | 3:+96097479 | None:intergenic |
| GATACTAAGGCTAAGATTCT+AGG | 0.315033 | 3:-96097419 | MsG0380017421.01.T01:CDS |
| TGTCAACAATTATAGTCTTC+TGG | 0.324805 | 3:+96099227 | None:intergenic |
| ACATTCTTTAAACAAAATAA+TGG | 0.329312 | 3:-96099705 | MsG0380017421.01.T01:CDS |
| GTTGTTCTTGTTGACTTGTT+TGG | 0.332002 | 3:+96099492 | None:intergenic |
| TGGAGGAAGGTACTCAGATT+TGG | 0.345102 | 3:+96097394 | None:intergenic |
| GGAACCATAACTGCTCTTCC+AGG | 0.349450 | 3:-96097458 | MsG0380017421.01.T01:CDS |
| CCACCAAAAGGACAAATATA+TGG | 0.350161 | 3:-96097680 | MsG0380017421.01.T01:CDS |
| CCCTTTATGACTTGTTCAAC+TGG | 0.351702 | 3:+96099885 | None:intergenic |
| CCAATACAAGTAACCAATAA+TGG | 0.352803 | 3:-96097479 | MsG0380017421.01.T01:CDS |
| GTTGGAAGAACTAGAATGAT+AGG | 0.353330 | 3:-96100026 | MsG0380017421.01.T01:CDS |
| ACTCCATCCAATGGAATATA+CGG | 0.365105 | 3:+96099633 | None:intergenic |
| GATATTAAAGTTGAGGATAT+TGG | 0.365230 | 3:-96098426 | MsG0380017421.01.T01:CDS |
| TCCAGTTGAACAAGTCATAA+AGG | 0.366172 | 3:-96099886 | MsG0380017421.01.T01:CDS |
| CTTTAAGAAAGATGGCTTGA+TGG | 0.371228 | 3:-96099380 | MsG0380017421.01.T01:CDS |
| CAGTTCAAGCAATATTAGAT+TGG | 0.371630 | 3:-96098281 | MsG0380017421.01.T01:CDS |
| TTTAGTCCTTGTGACCAGTT+TGG | 0.378654 | 3:+96099756 | None:intergenic |
| GTTCCTGACTTTAAGAAAGA+TGG | 0.382115 | 3:-96099388 | MsG0380017421.01.T01:CDS |
| TATCTATGTACATGTTGGTT+TGG | 0.383485 | 3:+96097119 | None:intergenic |
| CATGGCTAGGTGGTGAGAAT+TGG | 0.390572 | 3:+96097374 | None:intergenic |
| TAAAATGACAAGTAATCTCT+TGG | 0.395875 | 3:+96098186 | None:intergenic |
| TTACTGGTGGCTATATGGTT+TGG | 0.403321 | 3:+96097707 | None:intergenic |
| CAAGATGCACATGTTCTAGA+TGG | 0.408428 | 3:-96099663 | MsG0380017421.01.T01:CDS |
| GATGATGAATACATAATCAT+TGG | 0.412861 | 3:-96097800 | MsG0380017421.01.T01:CDS |
| TATGAGCACCTTGGAGATAT+TGG | 0.417376 | 3:-96097638 | MsG0380017421.01.T01:CDS |
| AGAATCTTAGCCTTAGTATC+AGG | 0.421693 | 3:+96097422 | None:intergenic |
| CGGCTTCTGTTGGATCTTGA+GGG | 0.427130 | 3:+96098594 | None:intergenic |
| GTATTTCTAGGTAGTTCATA+TGG | 0.430584 | 3:-96098462 | MsG0380017421.01.T01:CDS |
| AAATCCTGGAAGAGCAGTTA+TGG | 0.432056 | 3:+96097454 | None:intergenic |
| GCACTTTCAGGTATACCTTC+TGG | 0.435666 | 3:+96098306 | None:intergenic |
| ATCTTCAGTGACAACTCCTT+TGG | 0.436891 | 3:+96098387 | None:intergenic |
| GCGGCTTCTGTTGGATCTTG+AGG | 0.438003 | 3:+96098593 | None:intergenic |
| TTCTAGGTAGTTCATATGGT+TGG | 0.441852 | 3:-96098458 | MsG0380017421.01.T01:CDS |
| AAGCCATCTTTCTTAAAGTC+AGG | 0.443766 | 3:+96099385 | None:intergenic |
| AGATTGGCAAAGAAGGACTA+TGG | 0.445851 | 3:-96098265 | MsG0380017421.01.T01:CDS |
| CAATATTAGATTGGCAAAGA+AGG | 0.446472 | 3:-96098272 | MsG0380017421.01.T01:CDS |
| GAATGATAGGTAGCCCGAAA+TGG | 0.447072 | 3:-96100013 | MsG0380017421.01.T01:CDS |
| CCAATTAGAGTCGCTCCAAT+GGG | 0.447711 | 3:+96099921 | None:intergenic |
| GATATTCATTGTAAACTAGA+AGG | 0.448111 | 3:-96098815 | MsG0380017421.01.T01:CDS |
| GTTCCGTATATTCCATTGGA+TGG | 0.448817 | 3:-96099636 | MsG0380017421.01.T01:CDS |
| CTTGTTTGGATCTCTAATCA+AGG | 0.457534 | 3:+96099506 | None:intergenic |
| GTGACAACTCCTTTGGTATG+AGG | 0.458272 | 3:+96098394 | None:intergenic |
| CTTTGAGTATATGTCCCAAT+TGG | 0.459345 | 3:+96097547 | None:intergenic |
| CCAGTTGAACAAGTCATAAA+GGG | 0.460625 | 3:-96099885 | MsG0380017421.01.T01:CDS |
| CACAACACATCCCATGCAAC+AGG | 0.462297 | 3:+96098791 | None:intergenic |
| CGAAACATGCTTGAAGGTAG+TGG | 0.463688 | 3:+96098722 | None:intergenic |
| AGAGACAGTGAGATTGCAAT+AGG | 0.465168 | 3:-96097740 | MsG0380017421.01.T01:CDS |
| TGAGGAACTCCTTGAAATCC+TGG | 0.466088 | 3:+96099729 | None:intergenic |
| ATATCATGCCATGGCTCTCT+AGG | 0.466709 | 3:+96098833 | None:intergenic |
| TTCTGTTCCGTATATTCCAT+TGG | 0.467036 | 3:-96099640 | MsG0380017421.01.T01:CDS |
| ATTGTTAGCAAGATTGAAGC+TGG | 0.474341 | 3:-96098366 | MsG0380017421.01.T01:CDS |
| CTAAAGAGTCCAGGATTTCA+AGG | 0.476603 | 3:-96099738 | MsG0380017421.01.T01:CDS |
| CATTGATCTTTGATTTATGT+TGG | 0.476676 | 3:+96097772 | None:intergenic |
| TCAGGAAAACATTCAAATCC+TGG | 0.477356 | 3:+96097440 | None:intergenic |
| GTTGAAGCCCTTCAAAGAAA+AGG | 0.478206 | 3:-96098222 | MsG0380017421.01.T01:CDS |
| CAGTTTCTCTCCACATGGCT+AGG | 0.479672 | 3:+96097361 | None:intergenic |
| AACTGGTTGGTCTGTTTACA+CGG | 0.480935 | 3:-96099535 | MsG0380017421.01.T01:CDS |
| CATCTAGAACATGTGCATCT+TGG | 0.481308 | 3:+96099664 | None:intergenic |
| ATGGATTTAGACGTGCACTA+TGG | 0.481715 | 3:-96097661 | MsG0380017421.01.T01:CDS |
| AGATCGCACTATAACATTAA+GGG | 0.484210 | 3:-96097097 | MsG0380017421.01.T01:three_prime_UTR |
| TCCAATTAGAGTCGCTCCAA+TGG | 0.488605 | 3:+96099920 | None:intergenic |
| GATTTAGACAAAGCAAGAGT+TGG | 0.492961 | 3:-96100044 | MsG0380017421.01.T01:CDS |
| GGCTAGGTGGTGAGAATTGG+AGG | 0.496635 | 3:+96097377 | None:intergenic |
| AAAATGACAAGTAATCTCTT+GGG | 0.497438 | 3:+96098187 | None:intergenic |
| TATTCACGAAACATGCTTGA+AGG | 0.498456 | 3:+96098716 | None:intergenic |
| GTATGTGCCGGGAAAATGTT+GGG | 0.500103 | 3:-96099604 | MsG0380017421.01.T01:CDS |
| TTGTTTAGATCGATCGATGC+TGG | 0.502376 | 3:-96098632 | MsG0380017421.01.T01:CDS |
| GATGGAAGAAGTATAGTTCA+AGG | 0.503461 | 3:-96099280 | MsG0380017421.01.T01:CDS |
| GTGGGATTGATCTTTGTGAT+GGG | 0.506802 | 3:-96099150 | MsG0380017421.01.T01:CDS |
| AGGGCAACATAGTGAATACA+TGG | 0.511698 | 3:-96099866 | MsG0380017421.01.T01:CDS |
| TTTGACAGTGAATATAATGT+TGG | 0.517344 | 3:+96099953 | None:intergenic |
| TGGAGTAGAACGGTATGTGC+CGG | 0.519752 | 3:-96099616 | MsG0380017421.01.T01:CDS |
| CAACATAAATCAAAGATCAA+TGG | 0.522850 | 3:-96097771 | MsG0380017421.01.T01:CDS |
| AACTAGAAGGACCTGTTGCA+TGG | 0.522952 | 3:-96098802 | MsG0380017421.01.T01:CDS |
| GGAGTAGAACGGTATGTGCC+GGG | 0.525843 | 3:-96099615 | MsG0380017421.01.T01:CDS |
| GGTGGGATTGATCTTTGTGA+TGG | 0.527896 | 3:-96099151 | MsG0380017421.01.T01:CDS |
| TTTCATCAACCAAATTTCCC+AGG | 0.530381 | 3:-96099067 | MsG0380017421.01.T01:intron |
| CGATCTATCTATGTACATGT+TGG | 0.533542 | 3:+96097114 | None:intergenic |
| GGTATACCTTCTGGCCACAT+TGG | 0.533593 | 3:+96098315 | None:intergenic |
| CGGCAAATCAAAACAACACA+TGG | 0.534970 | 3:-96098664 | MsG0380017421.01.T01:CDS |
| TCTTACCCTCTCGGTTTCCA+AGG | 0.540213 | 3:+96098160 | None:intergenic |
| CAAAGATGGGAAAAGCAAGT+TGG | 0.540379 | 3:-96098758 | MsG0380017421.01.T01:CDS |
| ACTATACTTCTTCCATCACC+AGG | 0.545798 | 3:+96099286 | None:intergenic |
| CTTCCATCACCAGGGTTACG+TGG | 0.548889 | 3:+96099295 | None:intergenic |
| TTGATAGAATTAATCAGCAA+TGG | 0.551114 | 3:+96097314 | None:intergenic |
| ACTAGAAGGACCTGTTGCAT+GGG | 0.560087 | 3:-96098801 | MsG0380017421.01.T01:CDS |
| GTGGATCATCGTCCAATACA+AGG | 0.562412 | 3:-96099828 | MsG0380017421.01.T01:CDS |
| TTCATATGGTTGGAAATCAT+CGG | 0.572489 | 3:-96098448 | MsG0380017421.01.T01:CDS |
| ACCAGTAATAGACCACCAAA+AGG | 0.573701 | 3:-96097692 | MsG0380017421.01.T01:CDS |
| ATGGGTTAATATATTAGATG+TGG | 0.574499 | 3:-96099847 | MsG0380017421.01.T01:CDS |
| GTCATTCCAATGTGGCCAGA+AGG | 0.574690 | 3:-96098321 | MsG0380017421.01.T01:CDS |
| TACCGTTCTACTCCATCCAA+TGG | 0.576822 | 3:+96099624 | None:intergenic |
| TGCTTTGCACCTCATACCAA+AGG | 0.582854 | 3:-96098403 | MsG0380017421.01.T01:CDS |
| TGACAAGTAATCTCTTGGGT+TGG | 0.586202 | 3:+96098191 | None:intergenic |
| GTCAAACAAGATAACCCCAT+TGG | 0.587028 | 3:-96099936 | MsG0380017421.01.T01:CDS |
| ATCATCGGATATTAAAGTTG+AGG | 0.587336 | 3:-96098433 | MsG0380017421.01.T01:CDS |
| TCACAAGGACTAAAGAGTCC+AGG | 0.595640 | 3:-96099747 | MsG0380017421.01.T01:CDS |
| TGAAAACAAAGGATGTTCCA+TGG | 0.602384 | 3:+96099117 | None:intergenic |
| TATTGCCTTGGAAACCGAGA+GGG | 0.604275 | 3:-96098165 | MsG0380017421.01.T01:intron |
| TGCCCACGTAACCCTGGTGA+TGG | 0.604924 | 3:-96099298 | MsG0380017421.01.T01:CDS |
| GGTATGTGCCGGGAAAATGT+TGG | 0.606197 | 3:-96099605 | MsG0380017421.01.T01:CDS |
| TTTCTCTCCACATGGCTAGG+TGG | 0.613613 | 3:+96097364 | None:intergenic |
| GTGAGAATTGTATTTGAACA+TGG | 0.616949 | 3:+96099793 | None:intergenic |
| TTACAATGAATATCATGCCA+TGG | 0.618761 | 3:+96098824 | None:intergenic |
| ACATTCAGTTTCTCTCCACA+TGG | 0.623036 | 3:+96097356 | None:intergenic |
| ATGTGCAGAGTAAATGTGAA+AGG | 0.624116 | 3:+96099983 | None:intergenic |
| ATAAATCAAAGATCAATGGA+TGG | 0.626562 | 3:-96097767 | MsG0380017421.01.T01:CDS |
| TTCCATCACCAGGGTTACGT+GGG | 0.629779 | 3:+96099296 | None:intergenic |
| GTATTCAAAGTTGAAAACAA+AGG | 0.635550 | 3:+96099106 | None:intergenic |
| GCACTATGGTATGAGCACCT+TGG | 0.638088 | 3:-96097647 | MsG0380017421.01.T01:CDS |
| AATGATCCAAACTGGTCACA+AGG | 0.638447 | 3:-96099762 | MsG0380017421.01.T01:CDS |
| CAATTGGGACATATACTCAA+AGG | 0.640794 | 3:-96097546 | MsG0380017421.01.T01:CDS |
| AGGTGGTGAGAATTGGAGGA+AGG | 0.643329 | 3:+96097381 | None:intergenic |
| TTGTATCACCAATATCTCCA+AGG | 0.650254 | 3:+96097630 | None:intergenic |
| TCGTGTATCGAATGTTGCCA+CGG | 0.661868 | 3:-96098684 | MsG0380017421.01.T01:CDS |
| AAAGATTCCTGCTTAAAACA+AGG | 0.666302 | 3:+96097285 | None:intergenic |
| ATTCTCACCACCTAGCCATG+TGG | 0.671398 | 3:-96097371 | MsG0380017421.01.T01:exon |
| TTCCATTGGATGGAGTAGAA+CGG | 0.671871 | 3:-96099626 | MsG0380017421.01.T01:CDS |
| GGTGCTTCTATTAACAAAGG+TGG | 0.672280 | 3:-96098857 | MsG0380017421.01.T01:CDS |
| ACAGGTGCTTCTATTAACAA+AGG | 0.672622 | 3:-96098860 | MsG0380017421.01.T01:intron |
| AAGTTGCTAGTTCTGCACAA+TGG | 0.673752 | 3:-96099201 | MsG0380017421.01.T01:CDS |
| CTTGTATTGGATACTGCATG+AGG | 0.678260 | 3:+96097492 | None:intergenic |
| TGATGGGAGATATGATACCA+TGG | 0.695563 | 3:-96099134 | MsG0380017421.01.T01:CDS |
| CTATACTTCTTCCATCACCA+GGG | 0.698859 | 3:+96099287 | None:intergenic |
| AAGGTGGTCCTAGAGAGCCA+TGG | 0.705923 | 3:-96098841 | MsG0380017421.01.T01:CDS |
| GGGCAACATAGTGAATACAT+GGG | 0.707757 | 3:-96099865 | MsG0380017421.01.T01:CDS |
| CAATTAGAGTCGCTCCAATG+GGG | 0.713373 | 3:+96099922 | None:intergenic |
| TTATTGCCTTGGAAACCGAG+AGG | 0.718876 | 3:-96098166 | MsG0380017421.01.T01:CDS |
| TGTACATTGTCATTCCAATG+TGG | 0.747438 | 3:-96098329 | MsG0380017421.01.T01:CDS |
| GATCATCGTCCAATACAAGG+CGG | 0.779275 | 3:-96099825 | MsG0380017421.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAAAATATTCCAAC+AGG | - | Chr3:96098281-96098300 | MsG0380017421.01.T01:CDS | 15.0% |
| !! | AATAAATGTAAAATAGAAAC+AGG | + | Chr3:96099155-96099174 | None:intergenic | 15.0% |
| !! | ACATTCTTTAAACAAAATAA+TGG | - | Chr3:96097454-96097473 | MsG0380017421.01.T01:CDS | 15.0% |
| !!! | TTAATAATTTTCTTTTGCAA+AGG | + | Chr3:96099295-96099314 | None:intergenic | 15.0% |
| !!! | TTGAACTTCAAATTTTATAG+AGG | + | Chr3:96099922-96099941 | None:intergenic | 20.0% |
| ! | AAAATGACAAGTAATCTCTT+GGG | + | Chr3:96098975-96098994 | None:intergenic | 25.0% |
| ! | AGAAACAGGTAATATATTGT+TGG | + | Chr3:96099141-96099160 | None:intergenic | 25.0% |
| ! | AGGACTTAATTATGAAATGT+TGG | - | Chr3:96098238-96098257 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | ATAAATCAAAGATCAATGGA+TGG | - | Chr3:96099392-96099411 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | ATGTTAAAAATGATCCAAAC+TGG | - | Chr3:96097389-96097408 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | CAACATAAATCAAAGATCAA+TGG | - | Chr3:96099388-96099407 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | CATTGAAAATCAGTATTTCT+AGG | - | Chr3:96098685-96098704 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | CCAATCGTTAACAAAATTTA+AGG | + | Chr3:96099969-96099988 | None:intergenic | 25.0% |
| ! | GATATTAAAGTTGAGGATAT+TGG | - | Chr3:96098733-96098752 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | GATATTCATTGTAAACTAGA+AGG | - | Chr3:96098344-96098363 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | GATGATGAATACATAATCAT+TGG | - | Chr3:96099359-96099378 | MsG0380017421.01.T01:CDS | 25.0% |
| ! | GTATTCAAAGTTGAAAACAA+AGG | + | Chr3:96098056-96098075 | None:intergenic | 25.0% |
| ! | TAAAATGACAAGTAATCTCT+TGG | + | Chr3:96098976-96098995 | None:intergenic | 25.0% |
| ! | TTAATGCAATTCAAACTTTC+TGG | + | Chr3:96099569-96099588 | None:intergenic | 25.0% |
| ! | TTGATAGAATTAATCAGCAA+TGG | + | Chr3:96099848-96099867 | None:intergenic | 25.0% |
| ! | TTTGACAGTGAATATAATGT+TGG | + | Chr3:96097209-96097228 | None:intergenic | 25.0% |
| !! | AATCCATATATTTGTCCTTT+TGG | + | Chr3:96099485-96099504 | None:intergenic | 25.0% |
| !! | ACTTCAAATTTTATAGAGGT+AGG | + | Chr3:96099918-96099937 | None:intergenic | 25.0% |
| !! | ATGGGTTAATATATTAGATG+TGG | - | Chr3:96097312-96097331 | MsG0380017421.01.T01:three_prime_UTR | 25.0% |
| !! | CATTGATCTTTGATTTATGT+TGG | + | Chr3:96099390-96099409 | None:intergenic | 25.0% |
| !! | CCTTAAATTTTGTTAACGAT+TGG | - | Chr3:96099966-96099985 | MsG0380017421.01.T01:CDS | 25.0% |
| !! | TTAATGTTCTTATGCTGTTT+GGG | - | Chr3:96097734-96097753 | MsG0380017421.01.T01:CDS | 25.0% |
| !! | TTGTATTTGAACATGGATTT+TGG | + | Chr3:96097362-96097381 | None:intergenic | 25.0% |
| !!! | AAGCATTTTATTTGCATAAC+TGG | - | Chr3:96097607-96097626 | MsG0380017421.01.T01:CDS | 25.0% |
| !!! | ATTGGAAAGTGTCAATTTAA+TGG | + | Chr3:96099258-96099277 | None:intergenic | 25.0% |
| !!! | ATTTTATTTGCATAACTGGT+TGG | - | Chr3:96097611-96097630 | MsG0380017421.01.T01:CDS | 25.0% |
| !!! | TTTTGTTTAAAGAATGTGTG+AGG | + | Chr3:96097451-96097470 | None:intergenic | 25.0% |
| AAAGATTCCTGCTTAAAACA+AGG | + | Chr3:96099877-96099896 | None:intergenic | 30.0% | |
| AAGAACATTAACACCTTCAT+TGG | + | Chr3:96097725-96097744 | None:intergenic | 30.0% | |
| AAGGTGTATGTGCTAATAAT+TGG | + | Chr3:96099276-96099295 | None:intergenic | 30.0% | |
| AGATCGCACTATAACATTAA+GGG | - | Chr3:96100062-96100081 | MsG0380017421.01.T01:CDS | 30.0% | |
| ATCATCGGATATTAAAGTTG+AGG | - | Chr3:96098726-96098745 | MsG0380017421.01.T01:CDS | 30.0% | |
| CAATATTAGATTGGCAAAGA+AGG | - | Chr3:96098887-96098906 | MsG0380017421.01.T01:intron | 30.0% | |
| CAGTTCAAGCAATATTAGAT+TGG | - | Chr3:96098878-96098897 | MsG0380017421.01.T01:intron | 30.0% | |
| CATCTTGGTAAAGAGTAATT+TGG | + | Chr3:96097483-96097502 | None:intergenic | 30.0% | |
| CCAATACAAGTAACCAATAA+TGG | - | Chr3:96099680-96099699 | MsG0380017421.01.T01:CDS | 30.0% | |
| GCATGCATATTTACAATCTT+AGG | - | Chr3:96098218-96098237 | MsG0380017421.01.T01:CDS | 30.0% | |
| GTGAGAATTGTATTTGAACA+TGG | + | Chr3:96097369-96097388 | None:intergenic | 30.0% | |
| GTTAATGTTCTTATGCTGTT+TGG | - | Chr3:96097733-96097752 | MsG0380017421.01.T01:CDS | 30.0% | |
| TAGATCGCACTATAACATTA+AGG | - | Chr3:96100061-96100080 | MsG0380017421.01.T01:CDS | 30.0% | |
| TGAAAGGTTTCATTCCATTT+CGG | + | Chr3:96097163-96097182 | None:intergenic | 30.0% | |
| TGTCAACAATTATAGTCTTC+TGG | + | Chr3:96097935-96097954 | None:intergenic | 30.0% | |
| TTACAATGAATATCATGCCA+TGG | + | Chr3:96098338-96098357 | None:intergenic | 30.0% | |
| TTCATATGGTTGGAAATCAT+CGG | - | Chr3:96098711-96098730 | MsG0380017421.01.T01:CDS | 30.0% | |
| ! | CCATTATTGGTTACTTGTAT+TGG | + | Chr3:96099683-96099702 | None:intergenic | 30.0% |
| ! | TATCTATGTACATGTTGGTT+TGG | + | Chr3:96100043-96100062 | None:intergenic | 30.0% |
| ! | TCTGATTCCTTTTCTTTGAA+GGG | + | Chr3:96098947-96098966 | None:intergenic | 30.0% |
| ! | TGAATGTTTTCCTGATACTA+AGG | - | Chr3:96099727-96099746 | MsG0380017421.01.T01:CDS | 30.0% |
| !! | AGAACAATCACAAGTTTTGT+TGG | - | Chr3:96097987-96098006 | MsG0380017421.01.T01:intron | 30.0% |
| !! | GTATTTCTAGGTAGTTCATA+TGG | - | Chr3:96098697-96098716 | MsG0380017421.01.T01:CDS | 30.0% |
| !!! | TACTTGTCATTTTATTGCCT+TGG | - | Chr3:96098982-96099001 | MsG0380017421.01.T01:intron | 30.0% |
| AAACTAGTTCCAAAATCACC+TGG | + | Chr3:96098113-96098132 | None:intergenic | 35.0% | |
| AACGCAGTTCAAATATCTTC+GGG | + | Chr3:96099208-96099227 | None:intergenic | 35.0% | |
| AACTAGTTCCAAAATCACCT+GGG | + | Chr3:96098112-96098131 | None:intergenic | 35.0% | |
| AAGCCATCTTTCTTAAAGTC+AGG | + | Chr3:96097777-96097796 | None:intergenic | 35.0% | |
| ACAGGTGCTTCTATTAACAA+AGG | - | Chr3:96098299-96098318 | MsG0380017421.01.T01:CDS | 35.0% | |
| ACTCCATCCAATGGAATATA+CGG | + | Chr3:96097529-96097548 | None:intergenic | 35.0% | |
| AGCAGTTATGGTTCCATTAT+TGG | + | Chr3:96099696-96099715 | None:intergenic | 35.0% | |
| ATATAATCACTGTCAGGTTC+TGG | + | Chr3:96099054-96099073 | None:intergenic | 35.0% | |
| ATCCCTTACCTATCATCATT+TGG | + | Chr3:96099118-96099137 | None:intergenic | 35.0% | |
| ATGCCAAATGATGATAGGTA+AGG | - | Chr3:96099112-96099131 | MsG0380017421.01.T01:CDS | 35.0% | |
| ATGTGCAGAGTAAATGTGAA+AGG | + | Chr3:96097179-96097198 | None:intergenic | 35.0% | |
| ATTGTTAGCAAGATTGAAGC+TGG | - | Chr3:96098793-96098812 | MsG0380017421.01.T01:CDS | 35.0% | |
| CAATTGGGACATATACTCAA+AGG | - | Chr3:96099613-96099632 | MsG0380017421.01.T01:CDS | 35.0% | |
| CCACCAAAAGGACAAATATA+TGG | - | Chr3:96099479-96099498 | MsG0380017421.01.T01:intron | 35.0% | |
| CCAGTTGAACAAGTCATAAA+GGG | - | Chr3:96097274-96097293 | MsG0380017421.01.T01:three_prime_UTR | 35.0% | |
| CGATCTATCTATGTACATGT+TGG | + | Chr3:96100048-96100067 | None:intergenic | 35.0% | |
| CTTAAGAAGAAAGCCAATGA+AGG | - | Chr3:96097709-96097728 | MsG0380017421.01.T01:CDS | 35.0% | |
| CTTGTTTGGATCTCTAATCA+AGG | + | Chr3:96097656-96097675 | None:intergenic | 35.0% | |
| CTTTGAGTATATGTCCCAAT+TGG | + | Chr3:96099615-96099634 | None:intergenic | 35.0% | |
| GAAAGGTTTCATTCCATTTC+GGG | + | Chr3:96097162-96097181 | None:intergenic | 35.0% | |
| GAACGCAGTTCAAATATCTT+CGG | + | Chr3:96099209-96099228 | None:intergenic | 35.0% | |
| GAATGAATATACTCCTACAG+AGG | - | Chr3:96099026-96099045 | MsG0380017421.01.T01:intron | 35.0% | |
| GATACTAAGGCTAAGATTCT+AGG | - | Chr3:96099740-96099759 | MsG0380017421.01.T01:CDS | 35.0% | |
| GATTTAGACAAAGCAAGAGT+TGG | - | Chr3:96097115-96097134 | MsG0380017421.01.T01:three_prime_UTR | 35.0% | |
| GCTCTAATATAATCACTGTC+AGG | + | Chr3:96099060-96099079 | None:intergenic | 35.0% | |
| GTTGGAAGAACTAGAATGAT+AGG | - | Chr3:96097133-96097152 | MsG0380017421.01.T01:three_prime_UTR | 35.0% | |
| TATTCACGAAACATGCTTGA+AGG | + | Chr3:96098446-96098465 | None:intergenic | 35.0% | |
| TATTTGAACTGCGTTCTTTG+AGG | - | Chr3:96099213-96099232 | MsG0380017421.01.T01:CDS | 35.0% | |
| TCAGGAAAACATTCAAATCC+TGG | + | Chr3:96099722-96099741 | None:intergenic | 35.0% | |
| TCCAGTTGAACAAGTCATAA+AGG | - | Chr3:96097273-96097292 | MsG0380017421.01.T01:three_prime_UTR | 35.0% | |
| TGAAAACAAAGGATGTTCCA+TGG | + | Chr3:96098045-96098064 | None:intergenic | 35.0% | |
| TGCCAAATGATGATAGGTAA+GGG | - | Chr3:96099113-96099132 | MsG0380017421.01.T01:CDS | 35.0% | |
| TGTACATTGTCATTCCAATG+TGG | - | Chr3:96098830-96098849 | MsG0380017421.01.T01:CDS | 35.0% | |
| TGTTCATGCCAAATGATGAT+AGG | - | Chr3:96099107-96099126 | MsG0380017421.01.T01:CDS | 35.0% | |
| TTCTAGGTAGTTCATATGGT+TGG | - | Chr3:96098701-96098720 | MsG0380017421.01.T01:CDS | 35.0% | |
| TTCTGTTCCGTATATTCCAT+TGG | - | Chr3:96097519-96097538 | MsG0380017421.01.T01:CDS | 35.0% | |
| TTGTATCACCAATATCTCCA+AGG | + | Chr3:96099532-96099551 | None:intergenic | 35.0% | |
| TTTCATCAACCAAATTTCCC+AGG | - | Chr3:96098092-96098111 | MsG0380017421.01.T01:intron | 35.0% | |
| ! | CATTCATTTTCTTACCCTCT+CGG | + | Chr3:96099011-96099030 | None:intergenic | 35.0% |
| ! | CCATATATTTGTCCTTTTGG+TGG | + | Chr3:96099482-96099501 | None:intergenic | 35.0% |
| ! | CTCTGATTCCTTTTCTTTGA+AGG | + | Chr3:96098948-96098967 | None:intergenic | 35.0% |
| ! | CTTTAAGAAAGATGGCTTGA+TGG | - | Chr3:96097779-96097798 | MsG0380017421.01.T01:CDS | 35.0% |
| ! | GATGGAAGAAGTATAGTTCA+AGG | - | Chr3:96097879-96097898 | MsG0380017421.01.T01:intron | 35.0% |
| ! | GTGCAATTTTGAGCAAAGAT+GGG | - | Chr3:96098388-96098407 | MsG0380017421.01.T01:CDS | 35.0% |
| ! | GTTCCTGACTTTAAGAAAGA+TGG | - | Chr3:96097771-96097790 | MsG0380017421.01.T01:CDS | 35.0% |
| ! | TGTGCAATTTTGAGCAAAGA+TGG | - | Chr3:96098387-96098406 | MsG0380017421.01.T01:CDS | 35.0% |
| !! | AGAATCTTAGCCTTAGTATC+AGG | + | Chr3:96099740-96099759 | None:intergenic | 35.0% |
| !! | GTTGTTCTTGTTGACTTGTT+TGG | + | Chr3:96097670-96097689 | None:intergenic | 35.0% |
| !! | TTGTTAATAGAAGCACCTGT+TGG | + | Chr3:96098299-96098318 | None:intergenic | 35.0% |
| !!! | ACAATCACAAGTTTTGTTGG+TGG | - | Chr3:96097990-96098009 | MsG0380017421.01.T01:intron | 35.0% |
| !!! | AGTAACAAGACCTTTTTCAG+CGG | + | Chr3:96098588-96098607 | None:intergenic | 35.0% |
| !!! | AGTAACACCTTGTTTTAAGC+AGG | - | Chr3:96099867-96099886 | MsG0380017421.01.T01:CDS | 35.0% |
| !!! | CAATCACAAGTTTTGTTGGT+GGG | - | Chr3:96097991-96098010 | MsG0380017421.01.T01:intron | 35.0% |
| AAATCCTGGAAGAGCAGTTA+TGG | + | Chr3:96099708-96099727 | None:intergenic | 40.0% | |
| AAGAACAACCATCACTCTTG+GGG | - | Chr3:96097681-96097700 | MsG0380017421.01.T01:CDS | 40.0% | |
| AATGATCCAAACTGGTCACA+AGG | - | Chr3:96097397-96097416 | MsG0380017421.01.T01:CDS | 40.0% | |
| ACAAGAACAACCATCACTCT+TGG | - | Chr3:96097679-96097698 | MsG0380017421.01.T01:CDS | 40.0% | |
| ACATTCAGTTTCTCTCCACA+TGG | + | Chr3:96099806-96099825 | None:intergenic | 40.0% | |
| ACCAGTAATAGACCACCAAA+AGG | - | Chr3:96099467-96099486 | MsG0380017421.01.T01:intron | 40.0% | |
| ACTATACTTCTTCCATCACC+AGG | + | Chr3:96097876-96097895 | None:intergenic | 40.0% | |
| AGAGACAGTGAGATTGCAAT+AGG | - | Chr3:96099419-96099438 | MsG0380017421.01.T01:intron | 40.0% | |
| AGATTGGCAAAGAAGGACTA+TGG | - | Chr3:96098894-96098913 | MsG0380017421.01.T01:intron | 40.0% | |
| AGGGCAACATAGTGAATACA+TGG | - | Chr3:96097293-96097312 | MsG0380017421.01.T01:three_prime_UTR | 40.0% | |
| ATCTTCAGTGACAACTCCTT+TGG | + | Chr3:96098775-96098794 | None:intergenic | 40.0% | |
| ATGGATTTAGACGTGCACTA+TGG | - | Chr3:96099498-96099517 | MsG0380017421.01.T01:intron | 40.0% | |
| CAAAGATGGGAAAAGCAAGT+TGG | - | Chr3:96098401-96098420 | MsG0380017421.01.T01:CDS | 40.0% | |
| CAAGAACAACCATCACTCTT+GGG | - | Chr3:96097680-96097699 | MsG0380017421.01.T01:CDS | 40.0% | |
| CCAAAATCACCTGGGAAATT+TGG | + | Chr3:96098104-96098123 | None:intergenic | 40.0% | |
| CGGCAAATCAAAACAACACA+TGG | - | Chr3:96098495-96098514 | MsG0380017421.01.T01:intron | 40.0% | |
| CTAAAGAGTCCAGGATTTCA+AGG | - | Chr3:96097421-96097440 | MsG0380017421.01.T01:CDS | 40.0% | |
| CTATACTTCTTCCATCACCA+GGG | + | Chr3:96097875-96097894 | None:intergenic | 40.0% | |
| CTTGTATTGGATACTGCATG+AGG | + | Chr3:96099670-96099689 | None:intergenic | 40.0% | |
| GGGCAACATAGTGAATACAT+GGG | - | Chr3:96097294-96097313 | MsG0380017421.01.T01:three_prime_UTR | 40.0% | |
| GGTGCTTCTATTAACAAAGG+TGG | - | Chr3:96098302-96098321 | MsG0380017421.01.T01:CDS | 40.0% | |
| GTCAAACAAGATAACCCCAT+TGG | - | Chr3:96097223-96097242 | MsG0380017421.01.T01:three_prime_UTR | 40.0% | |
| GTCTATTACTGGTGGCTATA+TGG | + | Chr3:96099460-96099479 | None:intergenic | 40.0% | |
| GTGGGATTGATCTTTGTGAT+GGG | - | Chr3:96098009-96098028 | MsG0380017421.01.T01:intron | 40.0% | |
| GTTCCGTATATTCCATTGGA+TGG | - | Chr3:96097523-96097542 | MsG0380017421.01.T01:CDS | 40.0% | |
| GTTGAAGCCCTTCAAAGAAA+AGG | - | Chr3:96098937-96098956 | MsG0380017421.01.T01:intron | 40.0% | |
| TATGAGCACCTTGGAGATAT+TGG | - | Chr3:96099521-96099540 | MsG0380017421.01.T01:CDS | 40.0% | |
| TCGTCGAATAGCGTTTATGT+AGG | + | Chr3:96098648-96098667 | None:intergenic | 40.0% | |
| TGACAAGTAATCTCTTGGGT+TGG | + | Chr3:96098971-96098990 | None:intergenic | 40.0% | |
| TGATGGGAGATATGATACCA+TGG | - | Chr3:96098025-96098044 | MsG0380017421.01.T01:intron | 40.0% | |
| TTACTGGTGGCTATATGGTT+TGG | + | Chr3:96099455-96099474 | None:intergenic | 40.0% | |
| TTCCATTGGATGGAGTAGAA+CGG | - | Chr3:96097533-96097552 | MsG0380017421.01.T01:CDS | 40.0% | |
| TTGTTTAGATCGATCGATGC+TGG | - | Chr3:96098527-96098546 | MsG0380017421.01.T01:intron | 40.0% | |
| TTTAGTCCTTGTGACCAGTT+TGG | + | Chr3:96097406-96097425 | None:intergenic | 40.0% | |
| ! | ATCGTTTTGCTGAGACCAAT+TGG | - | Chr3:96099597-96099616 | MsG0380017421.01.T01:CDS | 40.0% |
| ! | CAAGATGCACATGTTCTAGA+TGG | - | Chr3:96097496-96097515 | MsG0380017421.01.T01:CDS | 40.0% |
| ! | CATCTAGAACATGTGCATCT+TGG | + | Chr3:96097498-96097517 | None:intergenic | 40.0% |
| ! | CCAAATTTCCCAGGTGATTT+TGG | - | Chr3:96098101-96098120 | MsG0380017421.01.T01:intron | 40.0% |
| ! | GTATCTTCCCAACATTTTCC+CGG | + | Chr3:96097565-96097584 | None:intergenic | 40.0% |
| ! | TCGTTTTGCTGAGACCAATT+GGG | - | Chr3:96099598-96099617 | MsG0380017421.01.T01:CDS | 40.0% |
| !! | AACTGGTTGGTCTGTTTACA+CGG | - | Chr3:96097624-96097643 | MsG0380017421.01.T01:CDS | 40.0% |
| !! | AAGTTGCTAGTTCTGCACAA+TGG | - | Chr3:96097958-96097977 | MsG0380017421.01.T01:intron | 40.0% |
| !! | CCCTTTATGACTTGTTCAAC+TGG | + | Chr3:96097277-96097296 | None:intergenic | 40.0% |
| !! | GCTGAAAAAGGTCTTGTTAC+TGG | - | Chr3:96098587-96098606 | MsG0380017421.01.T01:CDS | 40.0% |
| !! | TCCTTTTGGTGGTCTATTAC+TGG | + | Chr3:96099471-96099490 | None:intergenic | 40.0% |
| !! | TTTTGGTGGTCTATTACTGG+TGG | + | Chr3:96099468-96099487 | None:intergenic | 40.0% |
| !!! | ATTTTGGAACCGCCTTGTAT+TGG | + | Chr3:96097346-96097365 | None:intergenic | 40.0% |
| !!! | TGTGTTGTTTTGATTTGCCG+TGG | + | Chr3:96098495-96098514 | None:intergenic | 40.0% |
| AACTAGAAGGACCTGTTGCA+TGG | - | Chr3:96098357-96098376 | MsG0380017421.01.T01:CDS | 45.0% | |
| ACTAGAAGGACCTGTTGCAT+GGG | - | Chr3:96098358-96098377 | MsG0380017421.01.T01:CDS | 45.0% | |
| ATATCATGCCATGGCTCTCT+AGG | + | Chr3:96098329-96098348 | None:intergenic | 45.0% | |
| CAATTAGAGTCGCTCCAATG+GGG | + | Chr3:96097240-96097259 | None:intergenic | 45.0% | |
| CCAATTAGAGTCGCTCCAAT+GGG | + | Chr3:96097241-96097260 | None:intergenic | 45.0% | |
| CGAAACATGCTTGAAGGTAG+TGG | + | Chr3:96098440-96098459 | None:intergenic | 45.0% | |
| GAATGATAGGTAGCCCGAAA+TGG | - | Chr3:96097146-96097165 | MsG0380017421.01.T01:three_prime_UTR | 45.0% | |
| GATCATCGTCCAATACAAGG+CGG | - | Chr3:96097334-96097353 | MsG0380017421.01.T01:three_prime_UTR | 45.0% | |
| GGTGGGATTGATCTTTGTGA+TGG | - | Chr3:96098008-96098027 | MsG0380017421.01.T01:intron | 45.0% | |
| GTATGTGCCGGGAAAATGTT+GGG | - | Chr3:96097555-96097574 | MsG0380017421.01.T01:CDS | 45.0% | |
| GTGACAACTCCTTTGGTATG+AGG | + | Chr3:96098768-96098787 | None:intergenic | 45.0% | |
| GTGGATCATCGTCCAATACA+AGG | - | Chr3:96097331-96097350 | MsG0380017421.01.T01:three_prime_UTR | 45.0% | |
| TACCGTTCTACTCCATCCAA+TGG | + | Chr3:96097538-96097557 | None:intergenic | 45.0% | |
| TATTGCCTTGGAAACCGAGA+GGG | - | Chr3:96098994-96099013 | MsG0380017421.01.T01:intron | 45.0% | |
| TCACAAGGACTAAAGAGTCC+AGG | - | Chr3:96097412-96097431 | MsG0380017421.01.T01:CDS | 45.0% | |
| TCCAATTAGAGTCGCTCCAA+TGG | + | Chr3:96097242-96097261 | None:intergenic | 45.0% | |
| TCGTGTATCGAATGTTGCCA+CGG | - | Chr3:96098475-96098494 | MsG0380017421.01.T01:intron | 45.0% | |
| TGAGGAACTCCTTGAAATCC+TGG | + | Chr3:96097433-96097452 | None:intergenic | 45.0% | |
| TGCTTTGCACCTCATACCAA+AGG | - | Chr3:96098756-96098775 | MsG0380017421.01.T01:CDS | 45.0% | |
| TTATTGCCTTGGAAACCGAG+AGG | - | Chr3:96098993-96099012 | MsG0380017421.01.T01:intron | 45.0% | |
| ! | GCACTTTCAGGTATACCTTC+TGG | + | Chr3:96098856-96098875 | None:intergenic | 45.0% |
| ! | GCTTGAACTGAAGCACTTTC+AGG | + | Chr3:96098868-96098887 | None:intergenic | 45.0% |
| !! | TGGAGGAAGGTACTCAGATT+TGG | + | Chr3:96099768-96099787 | None:intergenic | 45.0% |
| AAGAAGCTCCCCAAGAGTGA+TGG | + | Chr3:96097692-96097711 | None:intergenic | 50.0% | |
| AGGTGGTGAGAATTGGAGGA+AGG | + | Chr3:96099781-96099800 | None:intergenic | 50.0% | |
| ATTCTCACCACCTAGCCATG+TGG | - | Chr3:96099788-96099807 | MsG0380017421.01.T01:CDS | 50.0% | |
| CACAACACATCCCATGCAAC+AGG | + | Chr3:96098371-96098390 | None:intergenic | 50.0% | |
| CAGTTTCTCTCCACATGGCT+AGG | + | Chr3:96099801-96099820 | None:intergenic | 50.0% | |
| CATGGCTAGGTGGTGAGAAT+TGG | + | Chr3:96099788-96099807 | None:intergenic | 50.0% | |
| CCAACAGAAGCCGCTGAAAA+AGG | - | Chr3:96098575-96098594 | MsG0380017421.01.T01:intron | 50.0% | |
| CCCATTGGAGCGACTCTAAT+TGG | - | Chr3:96097238-96097257 | MsG0380017421.01.T01:three_prime_UTR | 50.0% | |
| CGGCTTCTGTTGGATCTTGA+GGG | + | Chr3:96098568-96098587 | None:intergenic | 50.0% | |
| GCACTATGGTATGAGCACCT+TGG | - | Chr3:96099512-96099531 | MsG0380017421.01.T01:CDS | 50.0% | |
| GGAACCATAACTGCTCTTCC+AGG | - | Chr3:96099701-96099720 | MsG0380017421.01.T01:CDS | 50.0% | |
| GGTATACCTTCTGGCCACAT+TGG | + | Chr3:96098847-96098866 | None:intergenic | 50.0% | |
| GGTATGTGCCGGGAAAATGT+TGG | - | Chr3:96097554-96097573 | MsG0380017421.01.T01:CDS | 50.0% | |
| GTCATTCCAATGTGGCCAGA+AGG | - | Chr3:96098838-96098857 | MsG0380017421.01.T01:CDS | 50.0% | |
| TCTTACCCTCTCGGTTTCCA+AGG | + | Chr3:96099002-96099021 | None:intergenic | 50.0% | |
| TGGAGTAGAACGGTATGTGC+CGG | - | Chr3:96097543-96097562 | MsG0380017421.01.T01:CDS | 50.0% | |
| TTCCATCACCAGGGTTACGT+GGG | + | Chr3:96097866-96097885 | None:intergenic | 50.0% | |
| TTTCTCTCCACATGGCTAGG+TGG | + | Chr3:96099798-96099817 | None:intergenic | 50.0% | |
| !!! | CCTTTTTCAGCGGCTTCTGT+TGG | + | Chr3:96098578-96098597 | None:intergenic | 50.0% |
| AAGGTGGTCCTAGAGAGCCA+TGG | - | Chr3:96098318-96098337 | MsG0380017421.01.T01:CDS | 55.0% | |
| CTTCCATCACCAGGGTTACG+TGG | + | Chr3:96097867-96097886 | None:intergenic | 55.0% | |
| GCGGCTTCTGTTGGATCTTG+AGG | + | Chr3:96098569-96098588 | None:intergenic | 55.0% | |
| GGAGTAGAACGGTATGTGCC+GGG | - | Chr3:96097544-96097563 | MsG0380017421.01.T01:CDS | 55.0% | |
| GGCTAGGTGGTGAGAATTGG+AGG | + | Chr3:96099785-96099804 | None:intergenic | 55.0% | |
| ! | GTTTTGTGCCCACGTAACCC+TGG | - | Chr3:96097855-96097874 | MsG0380017421.01.T01:intron | 55.0% |
| ! | TCAGGTTCTGGTGCCTCTGT+AGG | + | Chr3:96099042-96099061 | None:intergenic | 55.0% |
| !! | ATCGATGCTGGTGCTGCTTC+TGG | - | Chr3:96098539-96098558 | MsG0380017421.01.T01:intron | 55.0% |
| TGCCCACGTAACCCTGGTGA+TGG | - | Chr3:96097861-96097880 | MsG0380017421.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 96097094 | 96100087 | 96097094 | ID=MsG0380017421.01;Name=MsG0380017421.01 |
| Chr3 | mRNA | 96097094 | 96100087 | 96097094 | ID=MsG0380017421.01.T01;Parent=MsG0380017421.01;Name=MsG0380017421.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.25|0.2|1|1|1|5|285|662 |
| Chr3 | exon | 96097094 | 96097824 | 96097094 | ID=MsG0380017421.01.T01:exon:2238;Parent=MsG0380017421.01.T01 |
| Chr3 | exon | 96098166 | 96098483 | 96098166 | ID=MsG0380017421.01.T01:exon:2237;Parent=MsG0380017421.01.T01 |
| Chr3 | exon | 96098585 | 96098878 | 96098585 | ID=MsG0380017421.01.T01:exon:2236;Parent=MsG0380017421.01.T01 |
| Chr3 | exon | 96099068 | 96099417 | 96099068 | ID=MsG0380017421.01.T01:exon:2235;Parent=MsG0380017421.01.T01 |
| Chr3 | exon | 96099507 | 96100087 | 96099507 | ID=MsG0380017421.01.T01:exon:2234;Parent=MsG0380017421.01.T01 |
| Chr3 | CDS | 96099507 | 96100087 | 96099507 | ID=MsG0380017421.01.T01:cds;Parent=MsG0380017421.01.T01 |
| Chr3 | CDS | 96099068 | 96099417 | 96099068 | ID=MsG0380017421.01.T01:cds;Parent=MsG0380017421.01.T01 |
| Chr3 | CDS | 96098585 | 96098878 | 96098585 | ID=MsG0380017421.01.T01:cds;Parent=MsG0380017421.01.T01 |
| Chr3 | CDS | 96098166 | 96098483 | 96098166 | ID=MsG0380017421.01.T01:cds;Parent=MsG0380017421.01.T01 |
| Chr3 | CDS | 96097379 | 96097824 | 96097379 | ID=MsG0380017421.01.T01:cds;Parent=MsG0380017421.01.T01 |
| Chr3 | three_prime_UTR | 96097094 | 96097378 | 96097094 | ID=MsG0380017421.01.T01:three_prime_utr;Parent=MsG0380017421.01.T01 |
| Gene Sequence |
| Protein sequence |
