AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006179.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006179.01.T01 MTR_1g115500 84.322 236 13 1 1 236 1 212 4.37e-140 391
MsG0180006179.01.T01 MTR_3g066060 53.419 234 85 1 3 236 55 264 1.77e-87 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006179.01.T01 AT1G75270 66.245 237 55 2 1 236 1 213 4.60e-109 313
MsG0180006179.01.T01 AT1G19570 66.525 236 54 2 1 235 1 212 1.69e-108 311
MsG0180006179.01.T01 AT5G16710 54.310 232 82 1 3 234 49 256 3.40e-90 266
MsG0180006179.01.T01 AT1G19550 48.485 198 51 4 41 235 3 152 3.36e-54 171

Find 77 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTCAAGTTTGATGGTAAA+TGG 0.194555 1:+101040089 MsG0180006179.01.T01:CDS
TTGGACTATTCCTGAGAATT+TGG 0.207787 1:+101040900 MsG0180006179.01.T01:CDS
AAGAGAACCCTTTGGGAAAA+TGG 0.223837 1:-101039882 None:intergenic
ATTTCAGGGGATCAAATATA+TGG 0.237821 1:+101040579 MsG0180006179.01.T01:intron
CACAGCTGTTGATTTGAGTT+TGG 0.323954 1:+101040831 MsG0180006179.01.T01:CDS
CTACTTCATGCATTGACCTT+TGG 0.348598 1:-101042591 None:intergenic
CCTGATTCTGATGTTATTGT+TGG 0.361346 1:+101040115 MsG0180006179.01.T01:CDS
TGCTTTGGATGAACATCTTA+AGG 0.363226 1:+101040676 MsG0180006179.01.T01:CDS
ACCACTAGATGGTACAGTTT+TGG 0.363899 1:-101040856 None:intergenic
CAAAGTTAAGAGAACCCTTT+GGG 0.367512 1:-101039889 None:intergenic
CTTGAATACCATCTTGCAAA+TGG 0.372158 1:-101040256 None:intergenic
TAACAGGGTCCATTTGTTGC+TGG 0.379644 1:+101040799 MsG0180006179.01.T01:intron
GTTAGCAGAACTCAATGCTT+TGG 0.381868 1:+101040661 MsG0180006179.01.T01:CDS
GTTCCAGTGGTCAAGTTTGA+TGG 0.383379 1:+101040082 MsG0180006179.01.T01:CDS
CCAAAGGGTTCTCTTAACTT+TGG 0.391179 1:+101039890 MsG0180006179.01.T01:CDS
TGGACCTTTGCCAAATTCTC+AGG 0.406140 1:-101040910 None:intergenic
TTACCGTACGAGGTTGGAAT+AGG 0.407760 1:+101039624 None:intergenic
AACAGGGTCCATTTGTTGCT+GGG 0.421851 1:+101040800 MsG0180006179.01.T01:intron
GACATACTCCTCTGCAGCCT+TGG 0.421971 1:-101042553 None:intergenic
GCAGAGGAGTATGTCATTGC+TGG 0.422618 1:+101042561 MsG0180006179.01.T01:CDS
GGAGAAACAAGAGATGGTTC+AGG 0.422879 1:-101040157 None:intergenic
TTGAATACCATCTTGCAAAT+GGG 0.423387 1:-101040255 None:intergenic
CCAAAGTTAAGAGAACCCTT+TGG 0.428562 1:-101039890 None:intergenic
TATTATTAAGAAATAAGAAT+AGG 0.428644 1:+101042662 MsG0180006179.01.T01:three_prime_UTR
TTAATCAAATGGATGTTGTA+TGG 0.432983 1:-101039927 None:intergenic
AGAGTACCATTGGGGTTTGT+CGG 0.436593 1:-101039955 None:intergenic
CTCATTCTCATCATCGCAAA+TGG 0.445448 1:+101039718 MsG0180006179.01.T01:exon
TGTCGGAGATATTAATCAAA+TGG 0.447813 1:-101039938 None:intergenic
ACCTTCTCCCCAGCAACAAA+TGG 0.454458 1:-101040808 None:intergenic
GTTGGTGCTCCAACTGTTCT+CGG 0.458021 1:+101039767 MsG0180006179.01.T01:CDS
GGTCAAGTTTGATGGTAAAT+GGG 0.460396 1:+101040090 MsG0180006179.01.T01:CDS
TGAATCCTTGCTCTTCAGAA+AGG 0.466931 1:-101040615 None:intergenic
CCAACAATAACATCAGAATC+AGG 0.477453 1:-101040115 None:intergenic
GGCTCTTGAGGTTGCTGTCA+AGG 0.478726 1:+101039739 MsG0180006179.01.T01:CDS
ACCACTGGAACCTTCCCTCC+AGG 0.482366 1:-101040070 None:intergenic
ACTATTCCCCATTTGCAAGA+TGG 0.484025 1:+101040248 MsG0180006179.01.T01:CDS
AAGAGCAAGGATTCAAATGA+TGG 0.484327 1:+101040623 MsG0180006179.01.T01:CDS
TCCATTTGTTGCTGGGGAGA+AGG 0.485126 1:+101040807 MsG0180006179.01.T01:CDS
GACCAAGTGCTACCACTAGA+TGG 0.490749 1:-101040867 None:intergenic
CGTGACCTTTCTGAAGAGCA+AGG 0.493675 1:+101040610 MsG0180006179.01.T01:CDS
TTACCATCAAACTTGACCAC+TGG 0.501479 1:-101040085 None:intergenic
GTTGCTGTCAAGGCTGCTGT+TGG 0.509413 1:+101039749 MsG0180006179.01.T01:CDS
CTTCTCTATAATAAATAAGT+AGG 0.515000 1:+101042733 MsG0180006179.01.T01:three_prime_UTR
CACTTGGTCACTTCAAGAGT+TGG 0.517047 1:+101040881 MsG0180006179.01.T01:CDS
TTTCAGGGGATCAAATATAT+GGG 0.518607 1:+101040580 MsG0180006179.01.T01:intron
AAACACAAGGGTGTCATGGC+AGG 0.528390 1:+101042866 MsG0180006179.01.T01:three_prime_UTR
GAATGAGAGGAGAACAAAGA+AGG 0.528597 1:-101039702 None:intergenic
TGGACATTTCAGCCAGCCAA+TGG 0.544744 1:-101042799 None:intergenic
TACACTGAGGAAAATTGAGC+AGG 0.548119 1:-101040178 None:intergenic
AGGAGTATGTCATTGCTGGA+TGG 0.548576 1:+101042565 MsG0180006179.01.T01:CDS
CATTGCTGGATGGGCACCAA+AGG 0.555766 1:+101042575 MsG0180006179.01.T01:CDS
ATCATCGCAAATGGCTCTTG+AGG 0.559050 1:+101039727 MsG0180006179.01.T01:exon
GGAAGTGAATCCTGGAGGGA+AGG 0.560932 1:+101040060 MsG0180006179.01.T01:CDS
TGAATACCATCTTGCAAATG+GGG 0.563089 1:-101040254 None:intergenic
GAGAAACAAGAGATGGTTCA+GGG 0.568330 1:-101040156 None:intergenic
ATTAAGAAATAAGAATAGGA+TGG 0.569904 1:+101042666 MsG0180006179.01.T01:three_prime_UTR
CCTAAAACACAAGGGTGTCA+TGG 0.572642 1:+101042862 MsG0180006179.01.T01:three_prime_UTR
GGAGTATGTCATTGCTGGAT+GGG 0.575558 1:+101042566 MsG0180006179.01.T01:CDS
CGAGAAAACCAAGGCTGCAG+AGG 0.575652 1:+101042545 MsG0180006179.01.T01:CDS
ACAGGGTCCATTTGTTGCTG+GGG 0.596245 1:+101040801 MsG0180006179.01.T01:intron
TACCATCTAGTGGTAGCACT+TGG 0.606458 1:+101040865 MsG0180006179.01.T01:CDS
GATTATAAAACACATTGCCC+AGG 0.612917 1:+101039646 MsG0180006179.01.T01:five_prime_UTR
TCCTGGAGGGAAGGTTCCAG+TGG 0.613379 1:+101040069 MsG0180006179.01.T01:CDS
TATTCCTGAGAATTTGGCAA+AGG 0.623001 1:+101040906 MsG0180006179.01.T01:CDS
GTACAGTCTCCGAGAACAGT+TGG 0.629766 1:-101039776 None:intergenic
TTTGTACCTTGATGTAGTTG+TGG 0.632536 1:-101040930 None:intergenic
AAAGGTCCACAACTACATCA+AGG 0.634770 1:+101040924 MsG0180006179.01.T01:CDS
TTTGCGATGATGAGAATGAG+AGG 0.640437 1:-101039715 None:intergenic
TGAGCAGGAGAAACAAGAGA+TGG 0.641215 1:-101040163 None:intergenic
TAAATTCGTCCTAAAACACA+AGG 0.648041 1:+101042853 MsG0180006179.01.T01:three_prime_UTR
TTGAATTTAGAGTACCATTG+GGG 0.655225 1:-101039963 None:intergenic
ACCAAAACTGTACCATCTAG+TGG 0.659489 1:+101040855 MsG0180006179.01.T01:CDS
GCTCGATCACAGTGCATGTG+TGG 0.663154 1:-101042637 None:intergenic
ATATCTCCGACAAACCCCAA+TGG 0.672245 1:+101039949 MsG0180006179.01.T01:CDS
TGAATCATTCGAGAAAACCA+AGG 0.685046 1:+101042536 MsG0180006179.01.T01:CDS
AAATTCGTCCTAAAACACAA+GGG 0.747294 1:+101042854 MsG0180006179.01.T01:three_prime_UTR
TGATGTGATGTCATACACTG+AGG 0.819217 1:-101040191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAAGAAATAAGAAT+AGG + Chr1:101042662-101042681 MsG0180006179.01.T01:three_prime_UTR 10.0%
!! TTGATAAATAATATATTACA+CGG - Chr1:101042286-101042305 None:intergenic 10.0%
!!! AATCAAATTTTGAAATTTAA+AGG - Chr1:101042153-101042172 None:intergenic 10.0%
!!! ATTTTTTTTTTTAGAGAAAA+GGG - Chr1:101041738-101041757 None:intergenic 10.0%
!! ATAAATTCACATATATACAT+TGG - Chr1:101040702-101040721 None:intergenic 15.0%
!!! AAATTTTGAAATTTAAAGGA+GGG - Chr1:101042149-101042168 None:intergenic 15.0%
!!! GATTTTTTTTTTTAGAGAAA+AGG - Chr1:101041739-101041758 None:intergenic 15.0%
!!! TTAATAGGTTATATAACTTT+TGG + Chr1:101042225-101042244 MsG0180006179.01.T01:intron 15.0%
!!! TTTATTTATTTGTAGGTTTT+TGG + Chr1:101040039-101040058 MsG0180006179.01.T01:intron 15.0%
!!! TTTGAAAGTATAAAAATAGA+GGG - Chr1:101040222-101040241 None:intergenic 15.0%
!!! TTTTATTTCTTTGAATTTTG+TGG + Chr1:101040012-101040031 MsG0180006179.01.T01:intron 15.0%
!!! TTTTTTTTTTTAGAGAAAAG+GGG - Chr1:101041737-101041756 None:intergenic 15.0%
!! ACATTTCCAATATCAAATTA+TGG + Chr1:101041339-101041358 MsG0180006179.01.T01:intron 20.0%
!! ATTAAGAAATAAGAATAGGA+TGG + Chr1:101042666-101042685 MsG0180006179.01.T01:three_prime_UTR 20.0%
!! CATTTCCAATATCAAATTAT+GGG + Chr1:101041340-101041359 MsG0180006179.01.T01:intron 20.0%
!! CTTCTCTATAATAAATAAGT+AGG + Chr1:101042733-101042752 MsG0180006179.01.T01:three_prime_UTR 20.0%
!! TATATGAATTGATTGATTGA+TGG + Chr1:101042479-101042498 MsG0180006179.01.T01:intron 20.0%
!! TATGCTAAAAAAATGTTACA+TGG - Chr1:101041633-101041652 None:intergenic 20.0%
!! TCATCACATTATTAGTTAAT+AGG + Chr1:101042210-101042229 MsG0180006179.01.T01:intron 20.0%
!! TGGCTTATTTATTTATTTGT+AGG + Chr1:101040032-101040051 MsG0180006179.01.T01:intron 20.0%
!!! AATTTTGAAATTTAAAGGAG+GGG - Chr1:101042148-101042167 None:intergenic 20.0%
!!! CAAATTTTGAAATTTAAAGG+AGG - Chr1:101042150-101042169 None:intergenic 20.0%
!!! GTTTGAAAGTATAAAAATAG+AGG - Chr1:101040223-101040242 None:intergenic 20.0%
!!! TTCACATTTTAAAGCTTATA+TGG - Chr1:101042822-101042841 None:intergenic 20.0%
!!! TTTCATTTGTTTTCATTTTC+AGG + Chr1:101039858-101039877 MsG0180006179.01.T01:intron 20.0%
!!! TTTCATTTTTTTGGATAAAG+TGG - Chr1:101041761-101041780 None:intergenic 20.0%
! AAATACATCAATACTCCTAA+AGG - Chr1:101042339-101042358 None:intergenic 25.0%
! AAGTACAACAAAAAAACAGT+TGG - Chr1:101041106-101041125 None:intergenic 25.0%
! ATGGATGTAATCTTATCTTA+TGG + Chr1:101040966-101040985 MsG0180006179.01.T01:intron 25.0%
! ATTGTAGAAGTTGACAATTA+GGG + Chr1:101041919-101041938 MsG0180006179.01.T01:intron 25.0%
! CAAGTGATTAAATTTATCTC+TGG + Chr1:101041655-101041674 MsG0180006179.01.T01:intron 25.0%
! GTTAATTAGCTATCAATTAC+AGG - Chr1:101040757-101040776 None:intergenic 25.0%
! TCATAAATCAAAGAAACAAC+AGG - Chr1:101042013-101042032 None:intergenic 25.0%
! TTAATCAAATGGATGTTGTA+TGG - Chr1:101039930-101039949 None:intergenic 25.0%
!! ATTGGATAGAGATTTCTTTT+AGG + Chr1:101041534-101041553 MsG0180006179.01.T01:intron 25.0%
!! GTTGTAGGTATTGTAAATTA+AGG - Chr1:101042398-101042417 None:intergenic 25.0%
!!! AAGCATGCTTTTCATTTTTT+TGG - Chr1:101041770-101041789 None:intergenic 25.0%
!!! ACTGTGTTTTATTAATCCAT+TGG + Chr1:101042783-101042802 MsG0180006179.01.T01:three_prime_UTR 25.0%
!!! GGGTTTTAAATCTTACATAT+TGG + Chr1:101041516-101041535 MsG0180006179.01.T01:intron 25.0%
!!! TACAAAGTTGTTTTCTGTAA+TGG + Chr1:101040947-101040966 MsG0180006179.01.T01:intron 25.0%
!!! TTTGTATTGCTTGTTTTGAT+TGG + Chr1:101040326-101040345 MsG0180006179.01.T01:intron 25.0%
!!! TTTTTTTCAGCAAATGCAAA+AGG - Chr1:101042426-101042445 None:intergenic 25.0%
AAATTCGTCCTAAAACACAA+GGG + Chr1:101042854-101042873 MsG0180006179.01.T01:three_prime_UTR 30.0%
AACAACAAAGTCAATAAGCA+TGG - Chr1:101040425-101040444 None:intergenic 30.0%
AATCGTGAAAAATGTAGAAC+CGG - Chr1:101039839-101039858 None:intergenic 30.0%
AATTGTCAACTTCTACAATC+TGG - Chr1:101041918-101041937 None:intergenic 30.0%
ATATATCGAGTTAGACCTTT+AGG + Chr1:101042321-101042340 MsG0180006179.01.T01:intron 30.0%
ATCTTCAGACTTAAAGTTGA+TGG - Chr1:101042092-101042111 None:intergenic 30.0%
ATTTCAGGGGATCAAATATA+TGG + Chr1:101040579-101040598 MsG0180006179.01.T01:intron 30.0%
GATATGGATGAAAGATGTAT+GGG - Chr1:101041420-101041439 None:intergenic 30.0%
GATTGTAGAAGTTGACAATT+AGG + Chr1:101041918-101041937 MsG0180006179.01.T01:intron 30.0%
GCAAACCCATAATTTGATAT+TGG - Chr1:101041348-101041367 None:intergenic 30.0%
TAAAGTCTGAACTTAAAGCT+GGG + Chr1:101041496-101041515 MsG0180006179.01.T01:intron 30.0%
TAAATTCGTCCTAAAACACA+AGG + Chr1:101042853-101042872 MsG0180006179.01.T01:three_prime_UTR 30.0%
TACCTAAGAGATTCATTGTA+TGG - Chr1:101042367-101042386 None:intergenic 30.0%
TAGTTCACATTAACTAGTCA+TGG + Chr1:101041965-101041984 MsG0180006179.01.T01:intron 30.0%
TATATTACACGGATTCAATG+TGG - Chr1:101042275-101042294 None:intergenic 30.0%
TGATATGGATGAAAGATGTA+TGG - Chr1:101041421-101041440 None:intergenic 30.0%
TGTCGGAGATATTAATCAAA+TGG - Chr1:101039941-101039960 None:intergenic 30.0%
TTAAAGTCTGAACTTAAAGC+TGG + Chr1:101041495-101041514 MsG0180006179.01.T01:intron 30.0%
TTATGAAGAAACTTCAAGTG+TGG - Chr1:101041135-101041154 None:intergenic 30.0%
TTGAATACCATCTTGCAAAT+GGG - Chr1:101040258-101040277 None:intergenic 30.0%
TTTCAGGGGATCAAATATAT+GGG + Chr1:101040580-101040599 MsG0180006179.01.T01:intron 30.0%
! AGTTGAATTTAGAGTACCAT+TGG - Chr1:101039968-101039987 None:intergenic 30.0%
! GGTGTAACTTATCATTTTGA+AGG + Chr1:101042687-101042706 MsG0180006179.01.T01:three_prime_UTR 30.0%
! GTTGAATTTAGAGTACCATT+GGG - Chr1:101039967-101039986 None:intergenic 30.0%
! TTGAATTTAGAGTACCATTG+GGG - Chr1:101039966-101039985 None:intergenic 30.0%
!! AATTATGCGTGGCTATTTTA+GGG + Chr1:101041561-101041580 MsG0180006179.01.T01:intron 30.0%
!! CTGAGATTTATTTCTGTTAC+CGG + Chr1:101039817-101039836 MsG0180006179.01.T01:intron 30.0%
!! GTACTTCAATCGTTTTGATA+TGG - Chr1:101041436-101041455 None:intergenic 30.0%
!! TGTTTTATTAATCCATTGGC+TGG + Chr1:101042787-101042806 MsG0180006179.01.T01:three_prime_UTR 30.0%
!! TTCATGTGTGTTTTGTTGAT+GGG + Chr1:101042759-101042778 MsG0180006179.01.T01:three_prime_UTR 30.0%
!!! TCTTTGTTTTAAAGCAAAGC+TGG + Chr1:101041267-101041286 MsG0180006179.01.T01:intron 30.0%
!!! TTTTTTTTAGAGAAAAGGGG+AGG - Chr1:101041734-101041753 None:intergenic 30.0%
AAGAGCAAGGATTCAAATGA+TGG + Chr1:101040623-101040642 MsG0180006179.01.T01:CDS 35.0%
AATTAACCACACTAACATGC+TGG + Chr1:101040770-101040789 MsG0180006179.01.T01:intron 35.0%
ACGCAAAAGACATGACTAAA+AGG - Chr1:101040995-101041014 None:intergenic 35.0%
CAAAGTTAAGAGAACCCTTT+GGG - Chr1:101039892-101039911 None:intergenic 35.0%
CCAACAATAACATCAGAATC+AGG - Chr1:101040118-101040137 None:intergenic 35.0%
CCTGATTCTGATGTTATTGT+TGG + Chr1:101040115-101040134 MsG0180006179.01.T01:CDS 35.0%
CGCAAAAGACATGACTAAAA+GGG - Chr1:101040994-101041013 None:intergenic 35.0%
CTTGAATACCATCTTGCAAA+TGG - Chr1:101040259-101040278 None:intergenic 35.0%
GATTATAAAACACATTGCCC+AGG + Chr1:101039646-101039665 MsG0180006179.01.T01:five_prime_UTR 35.0%
GGTGAGTTAAGAAATAGAGA+AGG - Chr1:101041713-101041732 None:intergenic 35.0%
GTCCATACAATGAATCTCTT+AGG + Chr1:101042362-101042381 MsG0180006179.01.T01:intron 35.0%
TATTCCTGAGAATTTGGCAA+AGG + Chr1:101040906-101040925 MsG0180006179.01.T01:CDS 35.0%
TCACGATGTTCACAATTTCA+GGG + Chr1:101040565-101040584 MsG0180006179.01.T01:intron 35.0%
TGAATACCATCTTGCAAATG+GGG - Chr1:101040257-101040276 None:intergenic 35.0%
TGAATCATTCGAGAAAACCA+AGG + Chr1:101042536-101042555 MsG0180006179.01.T01:CDS 35.0%
TGTAGTCAACATAAAGTGTG+TGG + Chr1:101041196-101041215 MsG0180006179.01.T01:intron 35.0%
TTCACAGCTGTTCAATTCAA+TGG - Chr1:101041020-101041039 None:intergenic 35.0%
TTCACGATGTTCACAATTTC+AGG + Chr1:101040564-101040583 MsG0180006179.01.T01:intron 35.0%
TTGGACTATTCCTGAGAATT+TGG + Chr1:101040900-101040919 MsG0180006179.01.T01:CDS 35.0%
TTTGTACCTTGATGTAGTTG+TGG - Chr1:101040933-101040952 None:intergenic 35.0%
! AGTTCAATGAAGCATCAGTA+AGG - Chr1:101041862-101041881 None:intergenic 35.0%
! ATGCAAAAGGCTTTAGTTGT+AGG - Chr1:101042413-101042432 None:intergenic 35.0%
! CAATTTGCTTCTGGAAAGAT+TGG - Chr1:101041307-101041326 None:intergenic 35.0%
! GGTCAAGTTTGATGGTAAAT+GGG + Chr1:101040090-101040109 MsG0180006179.01.T01:CDS 35.0%
! GTGATGTTTCTGAATGACTT+CGG + Chr1:101042924-101042943 MsG0180006179.01.T01:three_prime_UTR 35.0%
! GTTCAATGAAGCATCAGTAA+GGG - Chr1:101041861-101041880 None:intergenic 35.0%
! GTTGTGTTTTATGATCACCT+GGG - Chr1:101039666-101039685 None:intergenic 35.0%
! TGCTTTGGATGAACATCTTA+AGG + Chr1:101040676-101040695 MsG0180006179.01.T01:CDS 35.0%
! TGGTCAAGTTTGATGGTAAA+TGG + Chr1:101040089-101040108 MsG0180006179.01.T01:CDS 35.0%
! TGTGAACATCAATTTGCTTC+TGG - Chr1:101041316-101041335 None:intergenic 35.0%
! TGTTGTGTTTTATGATCACC+TGG - Chr1:101039667-101039686 None:intergenic 35.0%
!! CAATTATGCGTGGCTATTTT+AGG + Chr1:101041560-101041579 MsG0180006179.01.T01:intron 35.0%
!! CATGCTTTTCTTATTTGCCA+GGG + Chr1:101041783-101041802 MsG0180006179.01.T01:intron 35.0%
!! GTTCATGTGTGTTTTGTTGA+TGG + Chr1:101042758-101042777 MsG0180006179.01.T01:three_prime_UTR 35.0%
!! TGCTGGTGTCATGAAAAAAT+TGG + Chr1:101041374-101041393 MsG0180006179.01.T01:intron 35.0%
!! TGGTGTCATGAAAAAATTGG+TGG + Chr1:101041377-101041396 MsG0180006179.01.T01:intron 35.0%
!! TTTTAGGTCTCAATTATGCG+TGG + Chr1:101041550-101041569 MsG0180006179.01.T01:intron 35.0%
AAAGGTCCACAACTACATCA+AGG + Chr1:101040924-101040943 MsG0180006179.01.T01:CDS 40.0%
ACCAAAACTGTACCATCTAG+TGG + Chr1:101040855-101040874 MsG0180006179.01.T01:CDS 40.0%
ACTATTCCCCATTTGCAAGA+TGG + Chr1:101040248-101040267 MsG0180006179.01.T01:CDS 40.0%
CACGATGTTCACAATTTCAG+GGG + Chr1:101040566-101040585 MsG0180006179.01.T01:intron 40.0%
CCAAAGGGTTCTCTTAACTT+TGG + Chr1:101039890-101039909 MsG0180006179.01.T01:CDS 40.0%
CCAAAGTTAAGAGAACCCTT+TGG - Chr1:101039893-101039912 None:intergenic 40.0%
CTCATTCTCATCATCGCAAA+TGG + Chr1:101039718-101039737 MsG0180006179.01.T01:exon 40.0%
GAATGAGAGGAGAACAAAGA+AGG - Chr1:101039705-101039724 None:intergenic 40.0%
GAGAAACAAGAGATGGTTCA+GGG - Chr1:101040159-101040178 None:intergenic 40.0%
GGATAATTAAGAGTGAACCC+TGG - Chr1:101041803-101041822 None:intergenic 40.0%
GTCAACATAAAGTGTGTGGA+AGG + Chr1:101041200-101041219 MsG0180006179.01.T01:intron 40.0%
GTTAGCAGAACTCAATGCTT+TGG + Chr1:101040661-101040680 MsG0180006179.01.T01:CDS 40.0%
TACACTGAGGAAAATTGAGC+AGG - Chr1:101040181-101040200 None:intergenic 40.0%
TATCCTGCTTGACATGTACA+TGG + Chr1:101041818-101041837 MsG0180006179.01.T01:intron 40.0%
TATCTGAGTGAAACTGTGAG+AGG + Chr1:101040355-101040374 MsG0180006179.01.T01:intron 40.0%
TGAATCCTTGCTCTTCAGAA+AGG - Chr1:101040618-101040637 None:intergenic 40.0%
TGATGTGATGTCATACACTG+AGG - Chr1:101040194-101040213 None:intergenic 40.0%
TGGATGAAAGATGTATGGGA+AGG - Chr1:101041416-101041435 None:intergenic 40.0%
TTACCATCAAACTTGACCAC+TGG - Chr1:101040088-101040107 None:intergenic 40.0%
TTTGCGATGATGAGAATGAG+AGG - Chr1:101039718-101039737 None:intergenic 40.0%
! AAGAGAACCCTTTGGGAAAA+TGG - Chr1:101039885-101039904 None:intergenic 40.0%
! ACCACTAGATGGTACAGTTT+TGG - Chr1:101040859-101040878 None:intergenic 40.0%
! CTACTTCATGCATTGACCTT+TGG - Chr1:101042594-101042613 None:intergenic 40.0%
! TGCTTGGCAATGAGAACTTT+TGG + Chr1:101041063-101041082 MsG0180006179.01.T01:intron 40.0%
! TTCAGGTCCATTTTCCCAAA+GGG + Chr1:101039875-101039894 MsG0180006179.01.T01:intron 40.0%
!! AACATGCTGGAGGTATTAAC+AGG + Chr1:101040783-101040802 MsG0180006179.01.T01:intron 40.0%
!! AACTGCATGATGGCATTGAT+TGG + Chr1:101041040-101041059 MsG0180006179.01.T01:intron 40.0%
!! ACATGCTGGAGGTATTAACA+GGG + Chr1:101040784-101040803 MsG0180006179.01.T01:intron 40.0%
!! AGGTTTTTGGAAGTGAATCC+TGG + Chr1:101040052-101040071 MsG0180006179.01.T01:intron 40.0%
!! CACAGCTGTTGATTTGAGTT+TGG + Chr1:101040831-101040850 MsG0180006179.01.T01:CDS 40.0%
!! GCATGCTTTTCTTATTTGCC+AGG + Chr1:101041782-101041801 MsG0180006179.01.T01:intron 40.0%
!! TTTCAGGTCCATTTTCCCAA+AGG + Chr1:101039874-101039893 MsG0180006179.01.T01:intron 40.0%
!! TTTTGGAAGTGAATCCTGGA+GGG + Chr1:101040056-101040075 MsG0180006179.01.T01:CDS 40.0%
!! TTTTTGGAAGTGAATCCTGG+AGG + Chr1:101040055-101040074 MsG0180006179.01.T01:CDS 40.0%
ATACCTCCAGCATGTTAGTG+TGG - Chr1:101040779-101040798 None:intergenic 45.0%
ATATCTCCGACAAACCCCAA+TGG + Chr1:101039949-101039968 MsG0180006179.01.T01:CDS 45.0%
ATCATCGCAAATGGCTCTTG+AGG + Chr1:101039727-101039746 MsG0180006179.01.T01:exon 45.0%
CACTTGGTCACTTCAAGAGT+TGG + Chr1:101040881-101040900 MsG0180006179.01.T01:CDS 45.0%
CAGCTGTGAAAACTGCATGA+TGG + Chr1:101041030-101041049 MsG0180006179.01.T01:intron 45.0%
CTTCCATGTACATGTCAAGC+AGG - Chr1:101041824-101041843 None:intergenic 45.0%
GGAGAAACAAGAGATGGTTC+AGG - Chr1:101040160-101040179 None:intergenic 45.0%
GGAGTATGTCATTGCTGGAT+GGG + Chr1:101042566-101042585 MsG0180006179.01.T01:CDS 45.0%
GTTCCAGTGGTCAAGTTTGA+TGG + Chr1:101040082-101040101 MsG0180006179.01.T01:CDS 45.0%
TAACCACACTAACATGCTGG+AGG + Chr1:101040773-101040792 MsG0180006179.01.T01:intron 45.0%
TACCATCTAGTGGTAGCACT+TGG + Chr1:101040865-101040884 MsG0180006179.01.T01:CDS 45.0%
TGAGCAGGAGAAACAAGAGA+TGG - Chr1:101040166-101040185 None:intergenic 45.0%
TGGACCTTTGCCAAATTCTC+AGG - Chr1:101040913-101040932 None:intergenic 45.0%
! AACAGGGTCCATTTGTTGCT+GGG + Chr1:101040800-101040819 MsG0180006179.01.T01:intron 45.0%
! AGAGTACCATTGGGGTTTGT+CGG - Chr1:101039958-101039977 None:intergenic 45.0%
! AGGAGTATGTCATTGCTGGA+TGG + Chr1:101042565-101042584 MsG0180006179.01.T01:CDS 45.0%
! CCATGACACCCTTGTGTTTT+AGG - Chr1:101042865-101042884 None:intergenic 45.0%
! TAACAGGGTCCATTTGTTGC+TGG + Chr1:101040799-101040818 MsG0180006179.01.T01:intron 45.0%
!! CCTAAAACACAAGGGTGTCA+TGG + Chr1:101042862-101042881 MsG0180006179.01.T01:three_prime_UTR 45.0%
!! TATGGGTTTGCTATGCTTGC+TGG + Chr1:101041357-101041376 MsG0180006179.01.T01:intron 45.0%
!! TGATGGCATTGATTGGTGCT+TGG + Chr1:101041047-101041066 MsG0180006179.01.T01:intron 45.0%
!! TTAAAAATTTAACAAAAATA+AGG - Chr1:101040734-101040753 None:intergenic 5.0%
ACCTTCTCCCCAGCAACAAA+TGG - Chr1:101040811-101040830 None:intergenic 50.0%
GACCAAGTGCTACCACTAGA+TGG - Chr1:101040870-101040889 None:intergenic 50.0%
GTACAGTCTCCGAGAACAGT+TGG - Chr1:101039779-101039798 None:intergenic 50.0%
TCTCAGAGAGAGAGAGACAG+AGG - Chr1:101039803-101039822 None:intergenic 50.0%
TGGACATTTCAGCCAGCCAA+TGG - Chr1:101042802-101042821 None:intergenic 50.0%
! ACAGGGTCCATTTGTTGCTG+GGG + Chr1:101040801-101040820 MsG0180006179.01.T01:intron 50.0%
! CGTGACCTTTCTGAAGAGCA+AGG + Chr1:101040610-101040629 MsG0180006179.01.T01:CDS 50.0%
! GCAGAGGAGTATGTCATTGC+TGG + Chr1:101042561-101042580 MsG0180006179.01.T01:CDS 50.0%
! GTTGGTGCTCCAACTGTTCT+CGG + Chr1:101039767-101039786 MsG0180006179.01.T01:CDS 50.0%
! TCCATTTGTTGCTGGGGAGA+AGG + Chr1:101040807-101040826 MsG0180006179.01.T01:CDS 50.0%
!! AAACACAAGGGTGTCATGGC+AGG + Chr1:101042866-101042885 MsG0180006179.01.T01:three_prime_UTR 50.0%
AGGGGAAGAAGACACTGCAG+TGG - Chr1:101042130-101042149 None:intergenic 55.0%
CATTGCTGGATGGGCACCAA+AGG + Chr1:101042575-101042594 MsG0180006179.01.T01:CDS 55.0%
CGAGAAAACCAAGGCTGCAG+AGG + Chr1:101042545-101042564 MsG0180006179.01.T01:CDS 55.0%
GACATACTCCTCTGCAGCCT+TGG - Chr1:101042556-101042575 None:intergenic 55.0%
GCTCGATCACAGTGCATGTG+TGG - Chr1:101042640-101042659 None:intergenic 55.0%
GGAAGTGAATCCTGGAGGGA+AGG + Chr1:101040060-101040079 MsG0180006179.01.T01:CDS 55.0%
GGCTCTTGAGGTTGCTGTCA+AGG + Chr1:101039739-101039758 MsG0180006179.01.T01:CDS 55.0%
GTTGCTGTCAAGGCTGCTGT+TGG + Chr1:101039749-101039768 MsG0180006179.01.T01:CDS 55.0%
TGTGTACACCTGCACGCACA+AGG + Chr1:101042066-101042085 MsG0180006179.01.T01:intron 55.0%
ACCACTGGAACCTTCCCTCC+AGG - Chr1:101040073-101040092 None:intergenic 60.0%
TCCTGGAGGGAAGGTTCCAG+TGG + Chr1:101040069-101040088 MsG0180006179.01.T01:CDS 60.0%
!! GTTGATGGCCTTGTGCGTGC+AGG - Chr1:101042077-101042096 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 101039639 101042944 101039639 ID=MsG0180006179.01;Name=MsG0180006179.01
Chr1 mRNA 101039639 101042944 101039639 ID=MsG0180006179.01.T01;Parent=MsG0180006179.01;Name=MsG0180006179.01.T01;_AED=0.33;_eAED=0.37;_QI=98|0.8|0.83|1|1|1|6|336|236
Chr1 exon 101039639 101039794 101039639 ID=MsG0180006179.01.T01:exon:12781;Parent=MsG0180006179.01.T01
Chr1 exon 101039880 101039970 101039880 ID=MsG0180006179.01.T01:exon:12782;Parent=MsG0180006179.01.T01
Chr1 exon 101040054 101040269 101040054 ID=MsG0180006179.01.T01:exon:12783;Parent=MsG0180006179.01.T01
Chr1 exon 101040586 101040703 101040586 ID=MsG0180006179.01.T01:exon:12784;Parent=MsG0180006179.01.T01
Chr1 exon 101040805 101040945 101040805 ID=MsG0180006179.01.T01:exon:12785;Parent=MsG0180006179.01.T01
Chr1 exon 101042522 101042944 101042522 ID=MsG0180006179.01.T01:exon:12786;Parent=MsG0180006179.01.T01
Chr1 five_prime_UTR 101039639 101039736 101039639 ID=MsG0180006179.01.T01:five_prime_utr;Parent=MsG0180006179.01.T01
Chr1 CDS 101039737 101039794 101039737 ID=MsG0180006179.01.T01:cds;Parent=MsG0180006179.01.T01
Chr1 CDS 101039880 101039970 101039880 ID=MsG0180006179.01.T01:cds;Parent=MsG0180006179.01.T01
Chr1 CDS 101040054 101040269 101040054 ID=MsG0180006179.01.T01:cds;Parent=MsG0180006179.01.T01
Chr1 CDS 101040586 101040703 101040586 ID=MsG0180006179.01.T01:cds;Parent=MsG0180006179.01.T01
Chr1 CDS 101040805 101040945 101040805 ID=MsG0180006179.01.T01:cds;Parent=MsG0180006179.01.T01
Chr1 CDS 101042522 101042608 101042522 ID=MsG0180006179.01.T01:cds;Parent=MsG0180006179.01.T01
Chr1 three_prime_UTR 101042609 101042944 101042609 ID=MsG0180006179.01.T01:three_prime_utr;Parent=MsG0180006179.01.T01
Gene Sequence

>MsG0180006179.01.T01

ATGGCTCTTGAGGTTGCTGTCAAGGCTGCTGTTGGTGCTCCAACTGTTCTCGGAGACTGTCCATTTTCCCAAAGGGTTCTCTTAACTTTGGAAGAGAAGAAGATTCCATACAACATCCATTTGATTAATATCTCCGACAAACCCCAATGGTTTTTGGAAGTGAATCCTGGAGGGAAGGTTCCAGTGGTCAAGTTTGATGGTAAATGGGTTCCTGATTCTGATGTTATTGTTGGAATTCTTGAAGACAAATACCCTGAACCATCTCTTGTTTCTCCTGCTCAATTTTCCTCAGTGTATGACATCACATCACATCACCCTCTATTTTTATACTTTCAAACTCATGACTATTCCCCATTTGCAAGATGGGGATCAAATATATGGGATACTTTCGTGACCTTTCTGAAGAGCAAGGATTCAAATGATGGAACAGAACAAGCTTTGTTAGCAGAACTCAATGCTTTGGATGAACATCTTAAGGCCAATGGTCCATTTGTTGCTGGGGAGAAGGTCACAGCTGTTGATTTGAGTTTGGCACCAAAACTGTACCATCTAGTGGTAGCACTTGGTCACTTCAAGAGTTGGACTATTCCTGAGAATTTGGCAAAGGTCCACAACTACATCAAGTTGCTCTTCTCTCGTGAATCATTCGAGAAAACCAAGGCTGCAGAGGAGTATGTCATTGCTGGATGGGCACCAAAGGTCAATGCATGA
Protein sequence

>MsG0180006179.01.T01

MALEVAVKAAVGAPTVLGDCPFSQRVLLTLEEKKIPYNIHLINISDKPQWFLEVNPGGKVPVVKFDGKWVPDSDVIVGILEDKYPEPSLVSPAQFSSVYDITSHHPLFLYFQTHDYSPFARWGSNIWDTFVTFLKSKDSNDGTEQALLAELNALDEHLKANGPFVAGEKVTAVDLSLAPKLYHLVVALGHFKSWTIPENLAKVHNYIKLLFSRESFEKTKAAEEYVIAGWAPKVNA*