AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015271.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015271.01.T01 MTR_3g066060 94.853 272 6 1 1 272 1 264 0.0 520
MsG0380015271.01.T01 MTR_1g115500 56.422 218 87 1 55 272 3 212 1.42e-88 262
MsG0380015271.01.T01 MTR_1g067180 26.316 209 135 7 72 267 25 227 1.71e-13 68.6
MsG0380015271.01.T01 MTR_1g067180 26.066 211 137 7 70 267 26 230 1.64e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015271.01.T01 AT5G16710 65.399 263 73 4 20 272 4 258 4.41e-122 349
MsG0380015271.01.T01 AT1G75270 58.986 217 80 2 55 270 3 211 8.31e-92 270
MsG0380015271.01.T01 AT1G19570 56.221 217 86 2 55 270 3 211 3.46e-83 249
MsG0380015271.01.T01 AT1G19550 48.148 162 61 1 109 270 13 151 1.39e-45 150
MsG0380015271.01.T01 AT5G02790 28.431 204 123 8 81 269 38 233 6.57e-12 64.3

Find 86 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCTTCTCTACATTTAT+TGG 0.099081 3:-67659206 MsG0380015271.01.T01:CDS
TTTCTTAAATCAACCAATTT+TGG 0.139790 3:+67660107 None:intergenic
AGCAACACTCTTTGGCTAAA+AGG 0.217920 3:+67660161 None:intergenic
TTTACCTTATGAGCCAAAAT+TGG 0.268108 3:-67660120 MsG0380015271.01.T01:CDS
GGCACATCAGCACTAGTTTA+AGG 0.271227 3:+67657370 None:intergenic
ATGTCTTTCCCATTGATAAA+AGG 0.296522 3:+67658575 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.310068 3:-67658502 MsG0380015271.01.T01:CDS
TGCTTGTTCTGTTCCGTCAT+TGG 0.311879 3:+67659163 None:intergenic
AACAATTATGCTCTAGTTCA+TGG 0.316535 3:+67657492 None:intergenic
CTTTCCATCAAAATTTATTA+CGG 0.320003 3:+67659939 None:intergenic
CAGAAGACATTGATACTCTA+AGG 0.322844 3:+67662525 None:intergenic
TTACAGTCTCCAATCTTGTT+AGG 0.323971 3:+67662452 None:intergenic
GCTAAATTACATAATGATAT+TGG 0.335680 3:+67657527 None:intergenic
TCATTTGCTTGAGTCTCTTA+AGG 0.341122 3:-67657607 MsG0380015271.01.T01:three_prime_UTR
TATCATCAACCCTCTACTTT+AGG 0.351222 3:+67657652 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3:-67658518 MsG0380015271.01.T01:CDS
ATTACGGGAACTTTGCCTTC+AGG 0.363043 3:+67659955 None:intergenic
GCTTGTTCTGTTCCGTCATT+GGG 0.376742 3:+67659164 None:intergenic
TGCCTTCAGGACTGATTTCA+AGG 0.380155 3:+67659968 None:intergenic
CCAGTGTCAGCAACACTCTT+TGG 0.382066 3:+67660153 None:intergenic
GGACAAGAAGATCACCATTC+TGG 0.384402 3:+67660080 None:intergenic
CTTACCACTCCTAACAAGAT+TGG 0.386618 3:-67662461 MsG0380015271.01.T01:CDS
TTTCCATCAAAATTTATTAC+GGG 0.394965 3:+67659940 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3:-67658519 MsG0380015271.01.T01:CDS
TGTTCCTCCTTCTGAGCCAT+TGG 0.402497 3:-67662504 MsG0380015271.01.T01:CDS
TTCCTTGAGGTAATCGTTGA+AGG 0.431943 3:+67659121 None:intergenic
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3:+67658540 None:intergenic
TCAGGTGGTGTCACCAATGG+TGG 0.440607 3:+67659862 None:intergenic
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3:+67658527 None:intergenic
AAATAACTAAAACCATGAAA+AGG 0.444273 3:+67662419 None:intergenic
AATGCTGAAACCGTTGTTGA+AGG 0.445494 3:+67662553 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3:-67658531 MsG0380015271.01.T01:CDS
TTTGGGACATTATAAGAAAT+GGG 0.450474 3:-67658501 MsG0380015271.01.T01:CDS
CTAGTTGAAACGGCGTAGCT+TGG 0.457758 3:+67662578 None:intergenic
GACCTTGGTCTTAATAAAAG+AGG 0.458384 3:-67657344 MsG0380015271.01.T01:three_prime_UTR
GGTGTCACCAATGGTGGGCT+AGG 0.458979 3:+67659868 None:intergenic
TTTATTAAGACCAAGGTCAA+TGG 0.462160 3:+67657349 None:intergenic
TACCTCAACATCAGTTCAAA+AGG 0.462596 3:-67657311 MsG0380015271.01.T01:three_prime_UTR
ACGGTAACGAAGGTGGTTAA+CGG 0.463252 3:+67662601 None:intergenic
GCAACACTCTTTGGCTAAAA+GGG 0.467390 3:+67660162 None:intergenic
ATTGGTGACACCACCTGAAA+AGG 0.468553 3:-67659857 MsG0380015271.01.T01:CDS
CAACCTTCAATGACATCATC+CGG 0.486528 3:+67657679 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.497857 3:-67659902 MsG0380015271.01.T01:CDS
CTTCAAGTAAGACTTCAAAA+AGG 0.500765 3:+67658460 None:intergenic
AATAACTAAAACCATGAAAA+GGG 0.501277 3:+67662420 None:intergenic
TGCTGATGTGCCATTGACCT+TGG 0.513017 3:-67657359 MsG0380015271.01.T01:three_prime_UTR
CCAAAGAGTGTTGCTGACAC+TGG 0.519488 3:-67660153 MsG0380015271.01.T01:CDS
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3:+67658516 None:intergenic
TTGAAACGGCGTAGCTTGGA+CGG 0.528321 3:+67662582 None:intergenic
GCAACTTCCAATGGCTCAGA+AGG 0.530234 3:+67662497 None:intergenic
AATATATACTCAACTAGAGT+CGG 0.536748 3:+67657578 None:intergenic
GCTTTAACAGCAACTTCCAA+TGG 0.538010 3:+67662488 None:intergenic
TTTGAACTGATGTTGAGGTA+GGG 0.541201 3:+67657314 None:intergenic
CATCAACACACGTGCACAGC+CGG 0.542223 3:-67657698 MsG0380015271.01.T01:CDS
GTTGAAGGAGCTAGTTGAAA+CGG 0.542410 3:+67662568 None:intergenic
ATTTAAGAAACAAACCAGAA+TGG 0.544999 3:-67660094 MsG0380015271.01.T01:intron
TGAATTCTAACGGTGGACAT+TGG 0.546517 3:+67662650 None:intergenic
CAGGTGGTGTCACCAATGGT+GGG 0.551034 3:+67659863 None:intergenic
GAAAGAAAAGAGTAGATGAG+TGG 0.551383 3:+67657628 None:intergenic
CGGATGATGTCATTGAAGGT+TGG 0.553799 3:-67657678 MsG0380015271.01.T01:CDS
CCCTAACATGTTAAAATCTG+TGG 0.555061 3:+67657455 None:intergenic
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3:-67659875 MsG0380015271.01.T01:CDS
TTTAATCACACAAACATTGG+AGG 0.562440 3:-67659899 MsG0380015271.01.T01:CDS
AAAGGTCAGCGAGTCAGGTA+CGG 0.564552 3:+67658478 None:intergenic
TCAACTAGCTCCTTCAACAA+CGG 0.572004 3:-67662563 MsG0380015271.01.T01:CDS
TGCTGAAACTTGAATTCTAA+CGG 0.573659 3:+67662640 None:intergenic
GTCTCCAATCTTGTTAGGAG+TGG 0.575745 3:+67662457 None:intergenic
AGAAGACATTGATACTCTAA+GGG 0.575820 3:+67662526 None:intergenic
ACGAAGGTGGTTAACGGTGG+CGG 0.577042 3:+67662607 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.581723 3:-67659970 MsG0380015271.01.T01:CDS
CAGCCGGATGATGTCATTGA+AGG 0.588388 3:-67657682 MsG0380015271.01.T01:CDS
TAACATGTTAGGGAGAGGCC+AGG 0.591963 3:-67657445 MsG0380015271.01.T01:three_prime_UTR
CTCCTTCAACGATTACCTCA+AGG 0.601777 3:-67659123 MsG0380015271.01.T01:CDS
ACTTCCAATGGCTCAGAAGG+AGG 0.609075 3:+67662500 None:intergenic
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3:-67657662 MsG0380015271.01.T01:CDS
AAAAGCAAAGATCCCAATGA+CGG 0.633633 3:-67659176 MsG0380015271.01.T01:CDS
AGCTTGGACGGTAACGAAGG+TGG 0.635574 3:+67662594 None:intergenic
AAGAGTGTTGCTGACACTGG+AGG 0.648023 3:-67660150 MsG0380015271.01.T01:CDS
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3:-67657661 MsG0380015271.01.T01:CDS
TCTGCGGCTGACCTATCACT+AGG 0.664557 3:-67658551 MsG0380015271.01.T01:CDS
ATTGGTATTCAACTCTACAG+TGG 0.666375 3:+67657545 None:intergenic
CGTAGCTTGGACGGTAACGA+AGG 0.683732 3:+67662591 None:intergenic
GAAGACATTGATACTCTAAG+GGG 0.687606 3:+67662527 None:intergenic
GTAACGAAGGTGGTTAACGG+TGG 0.742876 3:+67662604 None:intergenic
CAATGGGAAAGACATCTCTG+CGG 0.754649 3:-67658567 MsG0380015271.01.T01:CDS
TGAAACTTGAATTCTAACGG+TGG 0.756125 3:+67662643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAAAATTTGATAATTTTT+CGG + Chr3:67662638-67662657 None:intergenic 10.0%
!!! TTCTTTGAATTTTTTTTTTT+GGG - Chr3:67657892-67657911 MsG0380015271.01.T01:intron 10.0%
!!! TTTAAAATTTCAGTATTTTA+GGG - Chr3:67660877-67660896 MsG0380015271.01.T01:intron 10.0%
!!! TTTCTTTGAATTTTTTTTTT+TGG - Chr3:67657891-67657910 MsG0380015271.01.T01:intron 10.0%
!!! TTTTAAAATTTCAGTATTTT+AGG - Chr3:67660876-67660895 MsG0380015271.01.T01:intron 10.0%
!! AAATTTCAAAATTGCAAAAA+TGG + Chr3:67661818-67661837 None:intergenic 15.0%
!! AATTGAAATGAAATTAGTAT+TGG - Chr3:67657557-67657576 MsG0380015271.01.T01:three_prime_UTR 15.0%
!! AATTTCAAAATTGCAAAAAT+GGG + Chr3:67661817-67661836 None:intergenic 15.0%
!! AGATGTTACAAAATATTAAA+CGG - Chr3:67661008-67661027 MsG0380015271.01.T01:intron 15.0%
!! TTCTATTTATATAACTTTGA+GGG - Chr3:67661220-67661239 MsG0380015271.01.T01:intron 15.0%
!! TTGTAAAGTTTATGAATAAT+TGG - Chr3:67661106-67661125 MsG0380015271.01.T01:intron 15.0%
!!! ATAAAGTTTTGAAAATGTTT+AGG - Chr3:67657761-67657780 MsG0380015271.01.T01:intron 15.0%
!!! ATAATTGTTCTTTTATAGTT+TGG - Chr3:67662439-67662458 MsG0380015271.01.T01:CDS 15.0%
!!! TTAAAATTTCAGTATTTTAG+GGG - Chr3:67660878-67660897 MsG0380015271.01.T01:intron 15.0%
!!! TTATATAAATAGAAGTGTTT+TGG + Chr3:67661214-67661233 None:intergenic 15.0%
!! AAATAACTAAAACCATGAAA+AGG + Chr3:67657501-67657520 None:intergenic 20.0%
!! AATAACTAAAACCATGAAAA+GGG + Chr3:67657500-67657519 None:intergenic 20.0%
!! AATATGATAAATGTTAAGTG+AGG + Chr3:67661502-67661521 None:intergenic 20.0%
!! AGAAAAAAACAGATTTACAA+AGG + Chr3:67661765-67661784 None:intergenic 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - Chr3:67661676-67661695 MsG0380015271.01.T01:intron 20.0%
!! ATGTTACAAAATATTAAACG+GGG - Chr3:67661010-67661029 MsG0380015271.01.T01:intron 20.0%
!! CAAATAGTTTACAAAATTTG+CGG - Chr3:67661607-67661626 MsG0380015271.01.T01:intron 20.0%
!! CATTGAATACTTAATGTATT+TGG + Chr3:67658245-67658264 None:intergenic 20.0%
!! CTTCTATTTATATAACTTTG+AGG - Chr3:67661219-67661238 MsG0380015271.01.T01:intron 20.0%
!! CTTTCCATCAAAATTTATTA+CGG + Chr3:67659981-67660000 None:intergenic 20.0%
!! GATGTTACAAAATATTAAAC+GGG - Chr3:67661009-67661028 MsG0380015271.01.T01:intron 20.0%
!! GCTAAATTACATAATGATAT+TGG + Chr3:67662393-67662412 None:intergenic 20.0%
!! GGTTAAAAAATTTATACGAA+AGG + Chr3:67661295-67661314 None:intergenic 20.0%
!! GTAAACATTAAAGAACAAAA+AGG + Chr3:67660628-67660647 None:intergenic 20.0%
!! GTCAAAAAAACTATATTTAC+AGG + Chr3:67659072-67659091 None:intergenic 20.0%
!! GTGAAAATGATTTATCAATA+GGG - Chr3:67661677-67661696 MsG0380015271.01.T01:intron 20.0%
!! TAAATTCAAATCACAAACAA+TGG - Chr3:67658020-67658039 MsG0380015271.01.T01:intron 20.0%
!! TATAATAGACCAAATACATT+AGG + Chr3:67658218-67658237 None:intergenic 20.0%
!! TGAATAGACAATTCAATAAA+GGG + Chr3:67659733-67659752 None:intergenic 20.0%
!! TTTCCATCAAAATTTATTAC+GGG + Chr3:67659980-67659999 None:intergenic 20.0%
!! TTTGTAAAGATTCATTGAAT+TGG - Chr3:67659382-67659401 MsG0380015271.01.T01:intron 20.0%
!! TTTGTTCTTTAATGTTTACA+TGG - Chr3:67660629-67660648 MsG0380015271.01.T01:intron 20.0%
!!! AAATTTTGTATGTTTGAATG+CGG - Chr3:67662648-67662667 MsG0380015271.01.T01:CDS 20.0%
!!! AACCTAAAAAGTAGTTTTTT+TGG + Chr3:67658186-67658205 None:intergenic 20.0%
!!! AATAAATTTTGATGGAAAGT+GGG - Chr3:67659982-67660001 MsG0380015271.01.T01:intron 20.0%
!!! CATTATTTTTCGTTTACATT+CGG + Chr3:67661990-67662009 None:intergenic 20.0%
!!! TAATAAATTTTGATGGAAAG+TGG - Chr3:67659981-67660000 MsG0380015271.01.T01:intron 20.0%
!!! TAATTTCTTGTAACCTTTTA+TGG - Chr3:67659354-67659373 MsG0380015271.01.T01:intron 20.0%
!!! TTTCTTAAATCAACCAATTT+TGG + Chr3:67659813-67659832 None:intergenic 20.0%
! AAAATGTTTAGGAGTAAAGA+TGG - Chr3:67657772-67657791 MsG0380015271.01.T01:intron 25.0%
! AAACAAAGGAAATTTCATCA+AGG + Chr3:67662136-67662155 None:intergenic 25.0%
! AAATGTTTAGGAGTAAAGAT+GGG - Chr3:67657773-67657792 MsG0380015271.01.T01:intron 25.0%
! AAGATCTTCTCTACATTTAT+TGG - Chr3:67660711-67660730 MsG0380015271.01.T01:intron 25.0%
! AATATATACTCAACTAGAGT+CGG + Chr3:67662342-67662361 None:intergenic 25.0%
! ACACTACAAGAAAAGTTATA+GGG + Chr3:67660954-67660973 None:intergenic 25.0%
! ACATCTTATGTATATACAAG+AGG + Chr3:67660994-67661013 None:intergenic 25.0%
! ACTAAGGAAAAATACATTCA+AGG + Chr3:67660389-67660408 None:intergenic 25.0%
! AGATTTAATCACACAAACAT+TGG - Chr3:67660015-67660034 MsG0380015271.01.T01:intron 25.0%
! ATGAAACTGCATCATAAATA+CGG + Chr3:67661582-67661601 None:intergenic 25.0%
! ATTACATATGAGACAAGTAA+CGG + Chr3:67662110-67662129 None:intergenic 25.0%
! ATTTAAGAAACAAACCAGAA+TGG - Chr3:67659823-67659842 MsG0380015271.01.T01:intron 25.0%
! CAATCAAAGAACAAAGATAA+AGG + Chr3:67659486-67659505 None:intergenic 25.0%
! CCAACACAACAATTATTATA+AGG + Chr3:67659921-67659940 None:intergenic 25.0%
! CCTTATAATAATTGTTGTGT+TGG - Chr3:67659918-67659937 MsG0380015271.01.T01:CDS 25.0%
! CTGAATAGACAATTCAATAA+AGG + Chr3:67659734-67659753 None:intergenic 25.0%
! CTTTATTGAATTGTCTATTC+AGG - Chr3:67659732-67659751 MsG0380015271.01.T01:intron 25.0%
! GATTACATTAAATTATGTCG+AGG - Chr3:67657704-67657723 MsG0380015271.01.T01:CDS 25.0%
! GCAAACTGTAAAATAAACAA+AGG + Chr3:67662150-67662169 None:intergenic 25.0%
! GGATATAGAATATAATCACT+TGG - Chr3:67659704-67659723 MsG0380015271.01.T01:intron 25.0%
! TAAAGATTCATTGAATTGGA+GGG - Chr3:67659386-67659405 MsG0380015271.01.T01:intron 25.0%
! TATACTACTTGAGTGAATTA+AGG - Chr3:67658118-67658137 MsG0380015271.01.T01:intron 25.0%
! TCTAATAATGTTGAACTTAC+AGG - Chr3:67662174-67662193 MsG0380015271.01.T01:intron 25.0%
! TGAAAAGAAAAAATTTGCAC+AGG + Chr3:67661316-67661335 None:intergenic 25.0%
! TGCCTTAAAATAAGCTATTT+GGG - Chr3:67658980-67658999 MsG0380015271.01.T01:intron 25.0%
! TTAGTATTATATACTACCTC+CGG + Chr3:67658302-67658321 None:intergenic 25.0%
! TTATAGATTTCCTCATCATT+TGG - Chr3:67660103-67660122 MsG0380015271.01.T01:CDS 25.0%
! TTTACAAAGAGATCCATAAA+AGG + Chr3:67659370-67659389 None:intergenic 25.0%
! TTTCGTTAGTCAATAAGTAT+GGG - Chr3:67660462-67660481 MsG0380015271.01.T01:intron 25.0%
! TTTGTTCTTTGATTGAATTG+TGG - Chr3:67659491-67659510 MsG0380015271.01.T01:intron 25.0%
!! AAAAATTCTTACCCTTTTCA+TGG - Chr3:67657486-67657505 MsG0380015271.01.T01:three_prime_UTR 25.0%
!! CATATTCTTGTACTTTTAGA+CGG - Chr3:67661516-67661535 MsG0380015271.01.T01:intron 25.0%
!! TTTGGGACATTATAAGAAAT+GGG - Chr3:67661416-67661435 MsG0380015271.01.T01:intron 25.0%
!! TTTTCAAAACTTTATGAAGC+AGG + Chr3:67657756-67657775 None:intergenic 25.0%
!! TTTTCTTCATATATTCGAAG+AGG - Chr3:67661779-67661798 MsG0380015271.01.T01:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - Chr3:67658280-67658299 MsG0380015271.01.T01:intron 25.0%
!!! AGCCAAAAAAACTACTTTTT+AGG - Chr3:67658181-67658200 MsG0380015271.01.T01:intron 25.0%
!!! ATATCTAGTTTTCTTGTACA+TGG - Chr3:67660143-67660162 MsG0380015271.01.T01:CDS 25.0%
!!! ATCACTTTTTTTGTTGTTGA+AGG - Chr3:67659683-67659702 MsG0380015271.01.T01:intron 25.0%
!!! GCAAATTTTTTCTTTTCACA+GGG - Chr3:67661318-67661337 MsG0380015271.01.T01:intron 25.0%
!!! GCTCTAAATTCAAAAGTTTT+TGG - Chr3:67661726-67661745 MsG0380015271.01.T01:intron 25.0%
!!! TGAGTTTTTTGAAAATTGCA+TGG - Chr3:67660167-67660186 MsG0380015271.01.T01:intron 25.0%
!!! TGCAAATTTTTTCTTTTCAC+AGG - Chr3:67661317-67661336 MsG0380015271.01.T01:intron 25.0%
!!! TTTTGGCTTATAAATGTGAT+TGG + Chr3:67658169-67658188 None:intergenic 25.0%
AAAAAGGAGTCCAAGTAATT+CGG + Chr3:67658642-67658661 None:intergenic 30.0%
AAACCGGGTAATCAAATTAT+TGG - Chr3:67659444-67659463 MsG0380015271.01.T01:intron 30.0%
AAGTAATTCGGAATTTGATC+AGG + Chr3:67658630-67658649 None:intergenic 30.0%
AATAATCTGTTGCATAGACT+GGG - Chr3:67657625-67657644 MsG0380015271.01.T01:three_prime_UTR 30.0%
AATAATTTGATTACCCGGTT+TGG + Chr3:67659445-67659464 None:intergenic 30.0%
AATGTTTAGGAGTAAAGATG+GGG - Chr3:67657774-67657793 MsG0380015271.01.T01:intron 30.0%
AATTCACTCAAGTAGTATAC+AGG + Chr3:67658117-67658136 None:intergenic 30.0%
ACAATATCTGACAGATTCAA+GGG + Chr3:67660321-67660340 None:intergenic 30.0%
AGAAAATAGAATCTAGAGAG+AGG - Chr3:67659097-67659116 MsG0380015271.01.T01:intron 30.0%
AGAAGACATTGATACTCTAA+GGG + Chr3:67657394-67657413 None:intergenic 30.0%
AGACCAATAATTTGATTACC+CGG + Chr3:67659450-67659469 None:intergenic 30.0%
ATAAAATCAAATCCTACCCT+TGG + Chr3:67657970-67657989 None:intergenic 30.0%
ATACATGAACAGTAACCAAA+TGG - Chr3:67658516-67658535 MsG0380015271.01.T01:CDS 30.0%
ATAGCTGAGACAAAAATAGA+TGG + Chr3:67660841-67660860 None:intergenic 30.0%
ATGATAAATGTTAAGTGAGG+AGG + Chr3:67661499-67661518 None:intergenic 30.0%
ATGTCTTTCCCATTGATAAA+AGG + Chr3:67661345-67661364 None:intergenic 30.0%
ATTTCTGTTTGCATTTGTAG+AGG - Chr3:67658953-67658972 MsG0380015271.01.T01:intron 30.0%
CACACTACAAGAAAAGTTAT+AGG + Chr3:67660955-67660974 None:intergenic 30.0%
CATTGAATGCCTAATGTATT+TGG - Chr3:67658206-67658225 MsG0380015271.01.T01:intron 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + Chr3:67661460-67661479 None:intergenic 30.0%
CTTGTGTCATACTATTTGTA+AGG + Chr3:67661887-67661906 None:intergenic 30.0%
CTTTCGTTAGTCAATAAGTA+TGG - Chr3:67660461-67660480 MsG0380015271.01.T01:intron 30.0%
GAAAATAGAATCTAGAGAGA+GGG - Chr3:67659098-67659117 MsG0380015271.01.T01:intron 30.0%
GCCTTAAAATAAGCTATTTG+GGG - Chr3:67658981-67659000 MsG0380015271.01.T01:intron 30.0%
GGAGGTAGTATATAATACTA+AGG - Chr3:67658301-67658320 MsG0380015271.01.T01:intron 30.0%
GTAAAGATTCATTGAATTGG+AGG - Chr3:67659385-67659404 MsG0380015271.01.T01:intron 30.0%
GTGCCTTAAAATAAGCTATT+TGG - Chr3:67658979-67658998 MsG0380015271.01.T01:intron 30.0%
TAAAATCAAATCCTACCCTT+GGG + Chr3:67657969-67657988 None:intergenic 30.0%
TACTGTTCATGTATTGTGTA+CGG + Chr3:67658510-67658529 None:intergenic 30.0%
TATATCTTCCGTAGTCAATT+TGG - Chr3:67660425-67660444 MsG0380015271.01.T01:intron 30.0%
TATGATTCCAAGACAAAGAT+GGG + Chr3:67658890-67658909 None:intergenic 30.0%
TCAGGGATAATGTTGTAATA+TGG + Chr3:67658328-67658347 None:intergenic 30.0%
TGAAACTGCATCATAAATAC+GGG + Chr3:67661581-67661600 None:intergenic 30.0%
TGAATTAAGGTTTACAACGT+TGG - Chr3:67658131-67658150 MsG0380015271.01.T01:intron 30.0%
TGATCAAATTCCGAATTACT+TGG - Chr3:67658629-67658648 MsG0380015271.01.T01:intron 30.0%
TGCAAAGAACAAATTGACTA+AGG + Chr3:67660405-67660424 None:intergenic 30.0%
TGCTGAAACTTGAATTCTAA+CGG + Chr3:67657280-67657299 None:intergenic 30.0%
TGTGGATTTACTATACATCT+AGG - Chr3:67659509-67659528 MsG0380015271.01.T01:intron 30.0%
TTAGAAGAAACTCCAAATTC+AGG + Chr3:67661706-67661725 None:intergenic 30.0%
TTTAATCACACAAACATTGG+AGG - Chr3:67660018-67660037 MsG0380015271.01.T01:intron 30.0%
TTTACCTTATGAGCCAAAAT+TGG - Chr3:67659797-67659816 MsG0380015271.01.T01:intron 30.0%
TTTATTAAGACCAAGGTCAA+TGG + Chr3:67662571-67662590 None:intergenic 30.0%
TTTGGTTGATTACTATTGCT+TGG - Chr3:67659546-67659565 MsG0380015271.01.T01:intron 30.0%
! AACAATTATGCTCTAGTTCA+TGG + Chr3:67662428-67662447 None:intergenic 30.0%
! ATTAGTATTGGAGACATTGA+TGG - Chr3:67657569-67657588 MsG0380015271.01.T01:three_prime_UTR 30.0%
! ATTTGTAAGGTAAAAGTGTG+AGG + Chr3:67661874-67661893 None:intergenic 30.0%
! GTTCCCGTAATAAATTTTGA+TGG - Chr3:67659974-67659993 MsG0380015271.01.T01:CDS 30.0%
! TAGGTTGCTAGATTTACTTT+TGG - Chr3:67659528-67659547 MsG0380015271.01.T01:intron 30.0%
! TCTAAAATTTAGCTAGTAGC+TGG + Chr3:67658701-67658720 None:intergenic 30.0%
! TTTGATATACTCATCGACTA+TGG + Chr3:67660353-67660372 None:intergenic 30.0%
!! AAAATTGCAAAAATGGGCTA+GGG + Chr3:67661811-67661830 None:intergenic 30.0%
!! AATAATTGTTGTGTTGGTTC+AGG - Chr3:67659924-67659943 MsG0380015271.01.T01:CDS 30.0%
!! ATGGTATTGGTAGAAAGAAT+AGG - Chr3:67657588-67657607 MsG0380015271.01.T01:three_prime_UTR 30.0%
!! CCACAGATTTTAACATGTTA+GGG - Chr3:67662462-67662481 MsG0380015271.01.T01:CDS 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - Chr3:67661415-67661434 MsG0380015271.01.T01:intron 30.0%
!! TGGTATTGGTAGAAAGAATA+GGG - Chr3:67657589-67657608 MsG0380015271.01.T01:three_prime_UTR 30.0%
!! TGTGTTTTTGCTTTAGTTCA+TGG - Chr3:67658844-67658863 MsG0380015271.01.T01:intron 30.0%
!!! AAGTTTTTGGTAATGTGCTT+TGG - Chr3:67661739-67661758 MsG0380015271.01.T01:intron 30.0%
!!! ACCCCAAATAGCTTATTTTA+AGG + Chr3:67658985-67659004 None:intergenic 30.0%
!!! CACAAAAGTTGGTATTTTAC+CGG + Chr3:67661961-67661980 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - Chr3:67661458-67661477 MsG0380015271.01.T01:intron 30.0%
AAAAGCAAAGATCCCAATGA+CGG - Chr3:67660741-67660760 MsG0380015271.01.T01:intron 35.0%
ACAGCATTTGAGTCTAAACT+TGG - Chr3:67659643-67659662 MsG0380015271.01.T01:intron 35.0%
ACGACGATAGAAAAAGTTGA+TGG + Chr3:67659886-67659905 None:intergenic 35.0%
ACTACTCAAATGTTTCCGTA+AGG - Chr3:67661843-67661862 MsG0380015271.01.T01:intron 35.0%
AGAGAGGTAAAAAACACACT+TGG + Chr3:67658074-67658093 None:intergenic 35.0%
AGTATAGCAGGGTAACATAT+AGG + Chr3:67660260-67660279 None:intergenic 35.0%
AGTTAGGAATCATTAGAGGA+AGG - Chr3:67659198-67659217 MsG0380015271.01.T01:CDS 35.0%
ATACCATTTGGAGATTGCTT+TGG - Chr3:67661398-67661417 MsG0380015271.01.T01:intron 35.0%
ATCCAAGTTCAAATTCTGAC+CGG - Chr3:67658575-67658594 MsG0380015271.01.T01:CDS 35.0%
ATCTCCAAATGGTATAGCTT+TGG + Chr3:67661393-67661412 None:intergenic 35.0%
ATCTCTCTTTGTGAGCAATT+GGG - Chr3:67659297-67659316 MsG0380015271.01.T01:intron 35.0%
ATGTATTGTGTACGGTTCAT+AGG + Chr3:67658502-67658521 None:intergenic 35.0%
ATGTTTAGGAGTAAAGATGG+GGG - Chr3:67657775-67657794 MsG0380015271.01.T01:intron 35.0%
ATTGGTATTCAACTCTACAG+TGG + Chr3:67662375-67662394 None:intergenic 35.0%
CAGAAGACATTGATACTCTA+AGG + Chr3:67657395-67657414 None:intergenic 35.0%
CCCTAACATGTTAAAATCTG+TGG + Chr3:67662465-67662484 None:intergenic 35.0%
CTACTCAAATGTTTCCGTAA+GGG - Chr3:67661844-67661863 MsG0380015271.01.T01:intron 35.0%
CTATGATTCCAAGACAAAGA+TGG + Chr3:67658891-67658910 None:intergenic 35.0%
GAAAGAAAAGAGTAGATGAG+TGG + Chr3:67662292-67662311 None:intergenic 35.0%
GAAGACATTGATACTCTAAG+GGG + Chr3:67657393-67657412 None:intergenic 35.0%
GAATAATCTGTTGCATAGAC+TGG - Chr3:67657624-67657643 MsG0380015271.01.T01:three_prime_UTR 35.0%
GACAATATCTGACAGATTCA+AGG + Chr3:67660322-67660341 None:intergenic 35.0%
GACACCATCTTACACATTTA+GGG - Chr3:67660583-67660602 MsG0380015271.01.T01:intron 35.0%
GCTGGTCATGTATGATTTAT+TGG + Chr3:67658683-67658702 None:intergenic 35.0%
GTTAGGAATCATTAGAGGAA+GGG - Chr3:67659199-67659218 MsG0380015271.01.T01:CDS 35.0%
TAATTCGGAATTTGATCAGG+AGG + Chr3:67658627-67658646 None:intergenic 35.0%
TACCATTTGGAGATTGCTTT+GGG - Chr3:67661399-67661418 MsG0380015271.01.T01:intron 35.0%
TACCTCAACATCAGTTCAAA+AGG - Chr3:67662606-67662625 MsG0380015271.01.T01:CDS 35.0%
TACTCAAATGTTTCCGTAAG+GGG - Chr3:67661845-67661864 MsG0380015271.01.T01:intron 35.0%
TATCATCAACCCTCTACTTT+AGG + Chr3:67662268-67662287 None:intergenic 35.0%
TCATTTGCTTGAGTCTCTTA+AGG - Chr3:67662310-67662329 MsG0380015271.01.T01:intron 35.0%
TCCAAAGACCAAATTGACTA+CGG + Chr3:67660436-67660455 None:intergenic 35.0%
TGAAACTTGAATTCTAACGG+TGG + Chr3:67657277-67657296 None:intergenic 35.0%
TGACACCATCTTACACATTT+AGG - Chr3:67660582-67660601 MsG0380015271.01.T01:intron 35.0%
TGACATTGATGAGTATAGCA+GGG + Chr3:67660271-67660290 None:intergenic 35.0%
TGAGTCATTCATCTTTGAGT+GGG - Chr3:67659246-67659265 MsG0380015271.01.T01:intron 35.0%
TGATCCCTAAATGTGTAAGA+TGG + Chr3:67660590-67660609 None:intergenic 35.0%
TGGCTTATAAATGTGATTGG+AGG + Chr3:67658166-67658185 None:intergenic 35.0%
TGGGGATAAGTGTAGAAATT+AGG - Chr3:67659316-67659335 MsG0380015271.01.T01:intron 35.0%
TGTCTATGCTTAAAGATCAC+AGG - Chr3:67661647-67661666 MsG0380015271.01.T01:intron 35.0%
TGTGTATGTGTTGAAGATAC+AGG - Chr3:67658740-67658759 MsG0380015271.01.T01:intron 35.0%
TTACAGTCTCCAATCTTGTT+AGG + Chr3:67657468-67657487 None:intergenic 35.0%
TTCGGTAATTGCACAAAAGT+TGG + Chr3:67661972-67661991 None:intergenic 35.0%
TTGACATTGATGAGTATAGC+AGG + Chr3:67660272-67660291 None:intergenic 35.0%
TTGAGTCATTCATCTTTGAG+TGG - Chr3:67659245-67659264 MsG0380015271.01.T01:intron 35.0%
TTTGAACTGATGTTGAGGTA+GGG + Chr3:67662606-67662625 None:intergenic 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - Chr3:67662188-67662207 MsG0380015271.01.T01:intron 35.0%
! AGAGTCATACATTTTCCTTG+AGG + Chr3:67660812-67660831 None:intergenic 35.0%
! ATCCTTTTGAACTGATGTTG+AGG + Chr3:67662611-67662630 None:intergenic 35.0%
! ATTGGAGACATTGATGGTAT+TGG - Chr3:67657575-67657594 MsG0380015271.01.T01:three_prime_UTR 35.0%
! CAAAATTGCAAAAATGGGCT+AGG + Chr3:67661812-67661831 None:intergenic 35.0%
! CAAAGTATCTCCAAATGATG+AGG + Chr3:67660116-67660135 None:intergenic 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - Chr3:67662189-67662208 MsG0380015271.01.T01:intron 35.0%
! CTTTTCCTGCATTATTGTCA+TGG - Chr3:67660927-67660946 MsG0380015271.01.T01:intron 35.0%
! TACTATTGCTTGGACTGTTT+TGG - Chr3:67659556-67659575 MsG0380015271.01.T01:intron 35.0%
! TGCCTCTTTTATTAAGACCA+AGG + Chr3:67662578-67662597 None:intergenic 35.0%
! TTACTTGGACTCCTTTTTCT+CGG - Chr3:67658644-67658663 MsG0380015271.01.T01:intron 35.0%
! TTGCTTTAGTTCATGGATGT+AGG - Chr3:67658851-67658870 MsG0380015271.01.T01:intron 35.0%
! TTTTGAACTGATGTTGAGGT+AGG + Chr3:67662607-67662626 None:intergenic 35.0%
!! GACCTTGGTCTTAATAAAAG+AGG - Chr3:67662573-67662592 MsG0380015271.01.T01:CDS 35.0%
!! GATTTTAACATGTTAGGGAG+AGG - Chr3:67662467-67662486 MsG0380015271.01.T01:CDS 35.0%
!! GCATGTGTTTTTGTCTATAG+TGG - Chr3:67660684-67660703 MsG0380015271.01.T01:intron 35.0%
!! GCCACAGATTTTAACATGTT+AGG - Chr3:67662461-67662480 MsG0380015271.01.T01:CDS 35.0%
!! TAGAAAAAGTTGATGGCTTG+TGG + Chr3:67659879-67659898 None:intergenic 35.0%
!!! TCAACCAATTTTGGCTCATA+AGG + Chr3:67659804-67659823 None:intergenic 35.0%
AACAGATCATCTAGGGATCA+GGG + Chr3:67662078-67662097 None:intergenic 40.0%
AATGCTGAAACCGTTGTTGA+AGG + Chr3:67657367-67657386 None:intergenic 40.0%
ACACAGACAACAGATCATCT+AGG + Chr3:67662086-67662105 None:intergenic 40.0%
AGAACTCACTAGAGAAAGCT+TGG + Chr3:67659226-67659245 None:intergenic 40.0%
AGCAACACTCTTTGGCTAAA+AGG + Chr3:67659759-67659778 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - Chr3:67661386-67661405 MsG0380015271.01.T01:intron 40.0%
AGTCTGGTCAAGAAATGTTC+CGG + Chr3:67658597-67658616 None:intergenic 40.0%
ATCAGGAGGTAAGTAAAGTC+TGG + Chr3:67658613-67658632 None:intergenic 40.0%
ATTATCCCTGAAACGTACAG+CGG - Chr3:67658337-67658356 MsG0380015271.01.T01:intron 40.0%
CAACCTTCAATGACATCATC+CGG + Chr3:67662241-67662260 None:intergenic 40.0%
CAACTACTCTATAGTCAGAG+AGG + Chr3:67658090-67658109 None:intergenic 40.0%
CAATACACCCATCTTTGTCT+TGG - Chr3:67658880-67658899 MsG0380015271.01.T01:intron 40.0%
CAATCGGTATTTGCACAGAA+GGG + Chr3:67661910-67661929 None:intergenic 40.0%
CACAGACAACAGATCATCTA+GGG + Chr3:67662085-67662104 None:intergenic 40.0%
CCAACAACTAGTGAAAAGGA+GGG + Chr3:67662054-67662073 None:intergenic 40.0%
CCTGACAAGGTCAATTGAAT+CGG - Chr3:67658549-67658568 MsG0380015271.01.T01:CDS 40.0%
CTAGGGTTGTGAAACACTTT+GGG - Chr3:67659174-67659193 MsG0380015271.01.T01:CDS 40.0%
CTTACCACTCCTAACAAGAT+TGG - Chr3:67657456-67657475 MsG0380015271.01.T01:three_prime_UTR 40.0%
GATCGTTTGTTTCCGCAATT+CGG - Chr3:67658048-67658067 MsG0380015271.01.T01:intron 40.0%
GATCTCTCTTTGTGAGCAAT+TGG - Chr3:67659296-67659315 MsG0380015271.01.T01:intron 40.0%
GCAACACTCTTTGGCTAAAA+GGG + Chr3:67659758-67659777 None:intergenic 40.0%
GCTTTAACAGCAACTTCCAA+TGG + Chr3:67657432-67657451 None:intergenic 40.0%
GGGTAGTTAGGAATCATTAG+AGG - Chr3:67659194-67659213 MsG0380015271.01.T01:CDS 40.0%
GGTTCATAGGCACAAAAGAA+GGG + Chr3:67658489-67658508 None:intergenic 40.0%
GTGAAACACTTTGGGTAGTT+AGG - Chr3:67659182-67659201 MsG0380015271.01.T01:CDS 40.0%
GTTGAAGGAGCTAGTTGAAA+CGG + Chr3:67657352-67657371 None:intergenic 40.0%
TAGGTGAATTTGTGCCAAAC+CGG - Chr3:67659428-67659447 MsG0380015271.01.T01:intron 40.0%
TAGTTCATGGATGTAGGCAA+TGG - Chr3:67658857-67658876 MsG0380015271.01.T01:intron 40.0%
TCAACTAGCTCCTTCAACAA+CGG - Chr3:67657354-67657373 MsG0380015271.01.T01:three_prime_UTR 40.0%
TCAATAGGGAGACCTGAATT+TGG - Chr3:67661691-67661710 MsG0380015271.01.T01:intron 40.0%
TCACATCAAGACAGTGATTG+TGG + Chr3:67659607-67659626 None:intergenic 40.0%
TCAGGAGCTCATTAACCATT+TGG + Chr3:67658534-67658553 None:intergenic 40.0%
TCTCTCTTTGTGAGCAATTG+GGG - Chr3:67659298-67659317 MsG0380015271.01.T01:intron 40.0%
TGTGGTCTGTAAGTGAAACA+TGG + Chr3:67659861-67659880 None:intergenic 40.0%
TGTTTAGGAGTAAAGATGGG+GGG - Chr3:67657776-67657795 MsG0380015271.01.T01:intron 40.0%
TTCCGGTCAGAATTTGAACT+TGG + Chr3:67658580-67658599 None:intergenic 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - Chr3:67659947-67659966 MsG0380015271.01.T01:CDS 40.0%
TTCCTTGAGGTAATCGTTGA+AGG + Chr3:67660799-67660818 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - Chr3:67658283-67658302 MsG0380015271.01.T01:intron 40.0%
! ATTTTGCTCTACATGCTTCC+TGG + Chr3:67662493-67662512 None:intergenic 40.0%
! CACAGGGTCCTTTTATCAAT+GGG - Chr3:67661334-67661353 MsG0380015271.01.T01:intron 40.0%
! GTGCAAATACCGATTGCTAA+AGG - Chr3:67661914-67661933 MsG0380015271.01.T01:intron 40.0%
! TACTCATCGACTATGGTGAT+TGG + Chr3:67660346-67660365 None:intergenic 40.0%
! TCACAGGGTCCTTTTATCAA+TGG - Chr3:67661333-67661352 MsG0380015271.01.T01:intron 40.0%
! TCCGTAGTCAATTTGGTCTT+TGG - Chr3:67660432-67660451 MsG0380015271.01.T01:intron 40.0%
! TCTAGGGTTGTGAAACACTT+TGG - Chr3:67659173-67659192 MsG0380015271.01.T01:CDS 40.0%
! TGAAGCACTCCTTTAGCAAT+CGG + Chr3:67661926-67661945 None:intergenic 40.0%
!! AGTTGGTATTTTACCGGCTA+CGG + Chr3:67661955-67661974 None:intergenic 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + Chr3:67661380-67661399 None:intergenic 40.0%
AAACACACTTGGCCGAATTG+CGG + Chr3:67658063-67658082 None:intergenic 45.0%
AAATCCTACCCTTGGGTAGA+GGG + Chr3:67657962-67657981 None:intergenic 45.0%
ACAAATTCACCTACGTCTGG+GGG + Chr3:67659421-67659440 None:intergenic 45.0%
ACAGATCATCTAGGGATCAG+GGG + Chr3:67662077-67662096 None:intergenic 45.0%
ACGGTAACGAAGGTGGTTAA+CGG + Chr3:67657319-67657338 None:intergenic 45.0%
AGGGAACACGGAAAAACCTA+GGG - Chr3:67659117-67659136 MsG0380015271.01.T01:intron 45.0%
AGGGTCCATGACAATAATGC+AGG + Chr3:67660935-67660954 None:intergenic 45.0%
AGGTGAATTTGTGCCAAACC+GGG - Chr3:67659429-67659448 MsG0380015271.01.T01:intron 45.0%
ATACTGATACCCTCTACCCA+AGG - Chr3:67657950-67657969 MsG0380015271.01.T01:intron 45.0%
ATAGGCACAAAAGAAGGGCA+AGG + Chr3:67658484-67658503 None:intergenic 45.0%
ATGTCGACACTTGTCGGATA+CGG + Chr3:67657674-67657693 None:intergenic 45.0%
ATTACGGGAACTTTGCCTTC+AGG + Chr3:67659965-67659984 None:intergenic 45.0%
CAAATGCAAGGAAGGGTGAA+AGG - Chr3:67658426-67658445 MsG0380015271.01.T01:intron 45.0%
CAACAGATCATCTAGGGATC+AGG + Chr3:67662079-67662098 None:intergenic 45.0%
CAATGGGAAAGACATCTCTG+CGG - Chr3:67661350-67661369 MsG0380015271.01.T01:intron 45.0%
CACAAATTCACCTACGTCTG+GGG + Chr3:67659422-67659441 None:intergenic 45.0%
CCGATTCAATTGACCTTGTC+AGG + Chr3:67658552-67658571 None:intergenic 45.0%
CGGATGATGTCATTGAAGGT+TGG - Chr3:67662239-67662258 MsG0380015271.01.T01:intron 45.0%
CGGTTCATAGGCACAAAAGA+AGG + Chr3:67658490-67658509 None:intergenic 45.0%
CTAACCCTGTTCCGAGAAAA+AGG + Chr3:67658658-67658677 None:intergenic 45.0%
CTCCTTCAACGATTACCTCA+AGG - Chr3:67660794-67660813 MsG0380015271.01.T01:intron 45.0%
CTTGGGTGAGGTTCTATCTA+GGG - Chr3:67659157-67659176 MsG0380015271.01.T01:CDS 45.0%
CTTTCACCCTTCCTTGCATT+TGG + Chr3:67658428-67658447 None:intergenic 45.0%
GAATCTAGAGAGAGGGAACA+CGG - Chr3:67659105-67659124 MsG0380015271.01.T01:intron 45.0%
GCAATCGGTATTTGCACAGA+AGG + Chr3:67661911-67661930 None:intergenic 45.0%
GCACAAATTCACCTACGTCT+GGG + Chr3:67659423-67659442 None:intergenic 45.0%
GCAGGAAAAGATGTAATGCC+AGG + Chr3:67660917-67660936 None:intergenic 45.0%
GCCAACAACTAGTGAAAAGG+AGG + Chr3:67662055-67662074 None:intergenic 45.0%
GCTTGTTCTGTTCCGTCATT+GGG + Chr3:67660756-67660775 None:intergenic 45.0%
GGACAAGAAGATCACCATTC+TGG + Chr3:67659840-67659859 None:intergenic 45.0%
GTAGAAAGAATAGGGCAGTG+TGG - Chr3:67657597-67657616 MsG0380015271.01.T01:three_prime_UTR 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + Chr3:67661404-67661423 None:intergenic 45.0%
GTCTCCAATCTTGTTAGGAG+TGG + Chr3:67657463-67657482 None:intergenic 45.0%
TACTGATACCCTCTACCCAA+GGG - Chr3:67657951-67657970 MsG0380015271.01.T01:intron 45.0%
TAGGCACAAAAGAAGGGCAA+GGG + Chr3:67658483-67658502 None:intergenic 45.0%
TCTTGGGTGAGGTTCTATCT+AGG - Chr3:67659156-67659175 MsG0380015271.01.T01:CDS 45.0%
TGCTTCATAACAACCGTAGC+CGG - Chr3:67661939-67661958 MsG0380015271.01.T01:intron 45.0%
TGCTTGTTCTGTTCCGTCAT+TGG + Chr3:67660757-67660776 None:intergenic 45.0%
TGGTTAATGAGCTCCTGACA+AGG - Chr3:67658536-67658555 MsG0380015271.01.T01:CDS 45.0%
TTATCCCTGAAACGTACAGC+GGG - Chr3:67658338-67658357 MsG0380015271.01.T01:intron 45.0%
TTCAAAAAGGTCAGCGAGTC+AGG + Chr3:67661447-67661466 None:intergenic 45.0%
TTTGGGCCAAATGCAAGGAA+GGG - Chr3:67658419-67658438 MsG0380015271.01.T01:intron 45.0%
! AACCTAGGGTTTGAGTGTTG+AGG - Chr3:67659131-67659150 MsG0380015271.01.T01:CDS 45.0%
! AAGCCCAACTGTTTGTTGCA+GGG + Chr3:67658391-67658410 None:intergenic 45.0%
! AAGCTATTTGGGGTTTCTGC+TGG - Chr3:67658991-67659010 MsG0380015271.01.T01:intron 45.0%
! ACTTACGCTGTAGCCTTTTC+AGG + Chr3:67660076-67660095 None:intergenic 45.0%
! ATTGGTGACACCACCTGAAA+AGG - Chr3:67660060-67660079 MsG0380015271.01.T01:intron 45.0%
! CCCTCCTTTTCACTAGTTGT+TGG - Chr3:67662051-67662070 MsG0380015271.01.T01:intron 45.0%
! CTTTTTCTCGGAACAGGGTT+AGG - Chr3:67658656-67658675 MsG0380015271.01.T01:intron 45.0%
! GACTCCTTTTTCTCGGAACA+GGG - Chr3:67658651-67658670 MsG0380015271.01.T01:intron 45.0%
! GGCACATCAGCACTAGTTTA+AGG + Chr3:67662550-67662569 None:intergenic 45.0%
! TAAGCCCAACTGTTTGTTGC+AGG + Chr3:67658392-67658411 None:intergenic 45.0%
! TGCCTTCAGGACTGATTTCA+AGG + Chr3:67659952-67659971 None:intergenic 45.0%
!! ACCTAGGGTTTGAGTGTTGA+GGG - Chr3:67659132-67659151 MsG0380015271.01.T01:CDS 45.0%
!! ATCTTTGAGTGGGTTGAGAG+AGG - Chr3:67659256-67659275 MsG0380015271.01.T01:intron 45.0%
!! TTTGAGTGTTGAGGGCTCTT+GGG - Chr3:67659140-67659159 MsG0380015271.01.T01:CDS 45.0%
!!! GCTTGGACTGTTTTGGTTGT+TGG - Chr3:67659563-67659582 MsG0380015271.01.T01:intron 45.0%
!!! TTTTCAGGTGGTGTCACCAA+TGG + Chr3:67660061-67660080 None:intergenic 45.0%
!! ATATATATATATATATATTC+AGG - Chr3:67660551-67660570 MsG0380015271.01.T01:intron 5.0%
AAAGGTCAGCGAGTCAGGTA+CGG + Chr3:67661442-67661461 None:intergenic 50.0%
AAGTGTGAGGAAGCCCCTTA+CGG + Chr3:67661861-67661880 None:intergenic 50.0%
ACTTCCAATGGCTCAGAAGG+AGG + Chr3:67657420-67657439 None:intergenic 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - Chr3:67662255-67662274 MsG0380015271.01.T01:intron 50.0%
AGTTGGGCTTAACGCACGTT+TGG - Chr3:67658401-67658420 MsG0380015271.01.T01:intron 50.0%
CAAATCCTACCCTTGGGTAG+AGG + Chr3:67657963-67657982 None:intergenic 50.0%
CAGCCGGATGATGTCATTGA+AGG - Chr3:67662235-67662254 MsG0380015271.01.T01:intron 50.0%
CCAGTGTCAGCAACACTCTT+TGG + Chr3:67659767-67659786 None:intergenic 50.0%
CTAGTTGAAACGGCGTAGCT+TGG + Chr3:67657342-67657361 None:intergenic 50.0%
GAGGGAACACGGAAAAACCT+AGG - Chr3:67659116-67659135 MsG0380015271.01.T01:intron 50.0%
GCAACTTCCAATGGCTCAGA+AGG + Chr3:67657423-67657442 None:intergenic 50.0%
GCTCCCTGCAACAAACAGTT+GGG - Chr3:67658385-67658404 MsG0380015271.01.T01:intron 50.0%
GGCACAAATTCACCTACGTC+TGG + Chr3:67659424-67659443 None:intergenic 50.0%
GGGGCCAACAACTAGTGAAA+AGG + Chr3:67662058-67662077 None:intergenic 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - Chr3:67662256-67662275 MsG0380015271.01.T01:intron 50.0%
GTAACGAAGGTGGTTAACGG+TGG + Chr3:67657316-67657335 None:intergenic 50.0%
GTTGGGCTTAACGCACGTTT+GGG - Chr3:67658402-67658421 MsG0380015271.01.T01:intron 50.0%
GTTTGGGCCAAATGCAAGGA+AGG - Chr3:67658418-67658437 MsG0380015271.01.T01:intron 50.0%
TAACATGTTAGGGAGAGGCC+AGG - Chr3:67662472-67662491 MsG0380015271.01.T01:CDS 50.0%
TATCCCTGAAACGTACAGCG+GGG - Chr3:67658339-67658358 MsG0380015271.01.T01:intron 50.0%
TGCATAGACTGGGACACTTC+TGG - Chr3:67657635-67657654 MsG0380015271.01.T01:three_prime_UTR 50.0%
TGTAGTGTGCATCGCTTAGC+TGG - Chr3:67660966-67660985 MsG0380015271.01.T01:intron 50.0%
TGTCGACACTTGTCGGATAC+GGG + Chr3:67657673-67657692 None:intergenic 50.0%
TGTTCCTCCTTCTGAGCCAT+TGG - Chr3:67657413-67657432 MsG0380015271.01.T01:three_prime_UTR 50.0%
TTGAAACGGCGTAGCTTGGA+CGG + Chr3:67657338-67657357 None:intergenic 50.0%
! ACTGGGACACTTCTGGTTGA+AGG - Chr3:67657642-67657661 MsG0380015271.01.T01:exon 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - Chr3:67660042-67660061 MsG0380015271.01.T01:intron 50.0%
! GGACTCCTTTTTCTCGGAAC+AGG - Chr3:67658650-67658669 MsG0380015271.01.T01:intron 50.0%
! GTGTCGATGTCGACACTTGT+CGG + Chr3:67657680-67657699 None:intergenic 50.0%
! TGCTGATGTGCCATTGACCT+TGG - Chr3:67662558-67662577 MsG0380015271.01.T01:CDS 50.0%
!! AAGAGTGTTGCTGACACTGG+AGG - Chr3:67659767-67659786 MsG0380015271.01.T01:intron 50.0%
!! CCAAAGAGTGTTGCTGACAC+TGG - Chr3:67659764-67659783 MsG0380015271.01.T01:intron 50.0%
!! GTTTGAGTGTTGAGGGCTCT+TGG - Chr3:67659139-67659158 MsG0380015271.01.T01:CDS 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + Chr3:67660073-67660092 None:intergenic 50.0%
AAGGGCAAGGGAGTTGAGCT+AGG + Chr3:67658471-67658490 None:intergenic 55.0%
ACGAAGGTGGTTAACGGTGG+CGG + Chr3:67657313-67657332 None:intergenic 55.0%
AGCTTGGACGGTAACGAAGG+TGG + Chr3:67657326-67657345 None:intergenic 55.0%
AGGGGTCTCAATCTCTGACC+TGG - Chr3:67660896-67660915 MsG0380015271.01.T01:intron 55.0%
ATCCCTGAAACGTACAGCGG+GGG - Chr3:67658340-67658359 MsG0380015271.01.T01:intron 55.0%
CATCAACACACGTGCACAGC+CGG - Chr3:67662219-67662238 MsG0380015271.01.T01:intron 55.0%
CGCTCCCTGCAACAAACAGT+TGG - Chr3:67658384-67658403 MsG0380015271.01.T01:intron 55.0%
CGTAGCTTGGACGGTAACGA+AGG + Chr3:67657329-67657348 None:intergenic 55.0%
GATACCCTCTACCCAAGGGT+AGG - Chr3:67657955-67657974 MsG0380015271.01.T01:intron 55.0%
GCACGTTTGGGCCAAATGCA+AGG - Chr3:67658414-67658433 MsG0380015271.01.T01:intron 55.0%
GCCCTCAACACTCAAACCCT+AGG + Chr3:67659136-67659155 None:intergenic 55.0%
TCTGCGGCTGACCTATCACT+AGG - Chr3:67661366-67661385 MsG0380015271.01.T01:intron 55.0%
!! CAGGTGGTGTCACCAATGGT+GGG + Chr3:67660057-67660076 None:intergenic 55.0%
!! TCAGGTGGTGTCACCAATGG+TGG + Chr3:67660058-67660077 None:intergenic 55.0%
AGCCCCCGCTGTACGTTTCA+GGG + Chr3:67658345-67658364 None:intergenic 60.0%
AGGGAGCGACTACTGTGCAG+GGG + Chr3:67658372-67658391 None:intergenic 60.0%
CAGGGAGCGACTACTGTGCA+GGG + Chr3:67658373-67658392 None:intergenic 60.0%
GTGTTGAGGGCTCTTGGGTG+AGG - Chr3:67659145-67659164 MsG0380015271.01.T01:CDS 60.0%
TAGCCCCCGCTGTACGTTTC+AGG + Chr3:67658346-67658365 None:intergenic 60.0%
TCACCTACGTCTGGGGGAGA+GGG + Chr3:67659415-67659434 None:intergenic 60.0%
TTCACCTACGTCTGGGGGAG+AGG + Chr3:67659416-67659435 None:intergenic 60.0%
!! GGTGTCACCAATGGTGGGCT+AGG + Chr3:67660052-67660071 None:intergenic 60.0%
GCAGGGAGCGACTACTGTGC+AGG + Chr3:67658374-67658393 None:intergenic 65.0%
TTGCCCTCTCCCCCAGACGT+AGG - Chr3:67659409-67659428 MsG0380015271.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 67657270 67662669 67657270 ID=MsG0380015271.01;Name=MsG0380015271.01
Chr3 mRNA 67657270 67662669 67657270 ID=MsG0380015271.01.T01;Parent=MsG0380015271.01;Name=MsG0380015271.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.8|0.83|1|1|1|6|387|272
Chr3 exon 67657270 67657743 67657270 ID=MsG0380015271.01.T01:exon:92;Parent=MsG0380015271.01.T01
Chr3 exon 67658460 67658600 67658460 ID=MsG0380015271.01.T01:exon:91;Parent=MsG0380015271.01.T01
Chr3 exon 67659118 67659235 67659118 ID=MsG0380015271.01.T01:exon:90;Parent=MsG0380015271.01.T01
Chr3 exon 67659850 67659993 67659850 ID=MsG0380015271.01.T01:exon:89;Parent=MsG0380015271.01.T01
Chr3 exon 67660095 67660185 67660095 ID=MsG0380015271.01.T01:exon:88;Parent=MsG0380015271.01.T01
Chr3 exon 67662432 67662669 67662432 ID=MsG0380015271.01.T01:exon:87;Parent=MsG0380015271.01.T01
Chr3 CDS 67662432 67662669 67662432 ID=MsG0380015271.01.T01:cds;Parent=MsG0380015271.01.T01
Chr3 CDS 67660095 67660185 67660095 ID=MsG0380015271.01.T01:cds;Parent=MsG0380015271.01.T01
Chr3 CDS 67659850 67659993 67659850 ID=MsG0380015271.01.T01:cds;Parent=MsG0380015271.01.T01
Chr3 CDS 67659118 67659235 67659118 ID=MsG0380015271.01.T01:cds;Parent=MsG0380015271.01.T01
Chr3 CDS 67658460 67658600 67658460 ID=MsG0380015271.01.T01:cds;Parent=MsG0380015271.01.T01
Chr3 CDS 67657657 67657743 67657657 ID=MsG0380015271.01.T01:cds;Parent=MsG0380015271.01.T01
Chr3 three_prime_UTR 67657270 67657656 67657270 ID=MsG0380015271.01.T01:three_prime_utr;Parent=MsG0380015271.01.T01
Gene Sequence

>MsG0380015271.01.T01

ATGTCCACCGTTAGAATTCAAGTTTCAGCATGCGCTCTTTCCGCCACCGTTAACCACCTTCGTTACCGTCCAAGCTACGCCGTTTCAACTAGCTCCTTCAACAACGGTTTCAGCATTAAACCCCTTAGAGTATCAATGTCTTCTGTTCCTCCTTCTGAGCCATTGGAAGTTGCTGTTAAAGCTTCTCTTACCACTCCTAACAAGATTGGAGACTGTAAAAATTCTTACCCTTTTCATGGCCCTTTTAGCCAAAGAGTGTTGCTGACACTGGAGGAAAAACATTTACCTTATGAGCCAAAATTGGTTGATTTAAGAAACAAACCAGAATGGTTCCTTGAAATCAGTCCTGAAGGCAAAGTTCCCGTAATAAATTTTGATGGAAAGTGGGTTGCAGATTCAGATTTAATCACACAAACATTGGAGGAGAAGTATCCTAGCCCACCATTGGTGACACCACCTGAAAAGGCTACAGCTGGATCAAAGATCTTCTCTACATTTATTGGATTTCTCAAAAGCAAAGATCCCAATGACGGAACAGAACAAGCATTACTAAATGAACTGAGCTCCTTCAACGATTACCTCAAGGAAAATGGTCCTTTTATCAATGGGAAAGACATCTCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGGCCGTACCTGACTCGCTGACCTTTTTGAAGTCTTACTTGAAGGAAATTTTCTCGAGGGAATCATTCATCAACACACGTGCACAGCCGGATGATGTCATTGAAGGTTGGCGTCCTAAAGTAGAGGGTTGA

Protein sequence

>MsG0380015271.01.T01

MSTVRIQVSACALSATVNHLRYRPSYAVSTSSFNNGFSIKPLRVSMSSVPPSEPLEVAVKASLTTPNKIGDCKNSYPFHGPFSQRVLLTLEEKHLPYEPKLVDLRNKPEWFLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFINGKDISAADLSLGPKLYHLEIALGHYKKWAVPDSLTFLKSYLKEIFSRESFINTRAQPDDVIEGWRPKVEG*