AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008098.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008098.01.T01 MTR_2g035470 84.241 349 25 3 1 349 1 319 0.0 580
MsG0280008098.01.T01 MTR_2g035480 70.857 350 66 6 1 349 1 315 9.76e-173 483
MsG0280008098.01.T01 MTR_2g035460 72.024 336 63 6 15 349 19 324 1.49e-169 475
MsG0280008098.01.T01 MTR_2g035460 70.234 299 58 6 52 349 1 269 3.04e-142 404
MsG0280008098.01.T01 MTR_2g035470 78.906 256 24 3 94 349 1 226 1.91e-137 390
MsG0280008098.01.T01 MTR_2g035480 67.729 251 50 5 100 349 1 221 1.13e-109 319
MsG0280008098.01.T01 MTR_2g035480 68.396 212 39 4 139 349 9 193 7.19e-95 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008098.01.T01 AT1G30910 50.602 332 131 6 17 348 19 317 5.70e-109 321
MsG0280008098.01.T01 AT5G44720 46.407 334 146 6 18 349 6 308 2.36e-100 299
MsG0280008098.01.T01 AT5G44720 52.752 218 99 2 18 235 6 219 2.27e-77 237

Find 79 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTACCACTGATTCCTTTA+TGG 0.111647 2:+25455202 MsG0280008098.01.T01:CDS
AAACAGGATCTCCCAATTTA+AGG 0.238470 2:-25458373 None:intergenic
TTATTCATTTGATAGGATTT+AGG 0.248928 2:+25455060 MsG0280008098.01.T01:intron
CCTACCACTGATTCCTTTAT+GGG 0.268886 2:+25455203 MsG0280008098.01.T01:CDS
TATCATTTGGTCTTATGATT+TGG 0.272912 2:-25458185 None:intergenic
ATTATTGATGATGCTTATTA+TGG 0.283969 2:+25458084 MsG0280008098.01.T01:CDS
CGGATAGCCATCACTGAAAA+AGG 0.301036 2:-25457539 None:intergenic
GGATGGAAAAGTCCTTAAAT+TGG 0.311164 2:+25458361 MsG0280008098.01.T01:CDS
TGCGGTCCCTCGACATAATC+AGG 0.317256 2:-25457511 None:intergenic
CTAACTTCTGAAGCTGCATT+TGG 0.328255 2:-25457478 None:intergenic
TTACTACTTTCAGGAATCAT+TGG 0.337495 2:+25457649 MsG0280008098.01.T01:intron
GCTGTCTCTTGATTGATTGT+TGG 0.352501 2:-25458114 None:intergenic
ATTCCACGGCATGACTTAAC+AGG 0.374221 2:-25454921 None:intergenic
AATATGTAAAATACCCATAA+AGG 0.377071 2:-25455216 None:intergenic
CAAGCTCCACTCACTCCTTC+AGG 0.381016 2:+25454954 MsG0280008098.01.T01:CDS
ACACCTGAAGCTAAAGTTAC+AGG 0.385335 2:+25454885 MsG0280008098.01.T01:CDS
ACCTCAACCAAAGCAAGCTT+TGG 0.385439 2:-25455143 None:intergenic
ATGAGAGTTTCATTTGGTTC+AGG 0.396574 2:-25458147 None:intergenic
TGGATGGTTGTGAATTCAAA+AGG 0.399082 2:+25455095 MsG0280008098.01.T01:CDS
AGTTGAACCAAAGCTTGCTT+TGG 0.418513 2:+25455136 MsG0280008098.01.T01:CDS
ATGCCTGTAACTTTAGCTTC+AGG 0.433437 2:-25454888 None:intergenic
ATGAAACTCTCATGAAATAC+AGG 0.434295 2:+25458157 MsG0280008098.01.T01:CDS
TATTTCATGAGAGTTTCATT+TGG 0.448817 2:-25458153 None:intergenic
GATGGAAAAGTCCTTAAATT+GGG 0.461949 2:+25458362 MsG0280008098.01.T01:CDS
GTCATGATATAGTGTGGAAC+TGG 0.465897 2:+25458318 MsG0280008098.01.T01:CDS
GGGAATGGACTGGCTCTGCA+TGG 0.466847 2:+25457189 MsG0280008098.01.T01:CDS
CTTGTGTTGCAGGTCTACTT+TGG 0.472504 2:+25458296 MsG0280008098.01.T01:intron
GGAGAGATTTCAAGATAAGC+AGG 0.478806 2:+25457862 MsG0280008098.01.T01:CDS
CTCCATAGGTCTTCAGAGTA+CGG 0.481646 2:-25457843 None:intergenic
TGAGAACCACTGCGATGCTT+CGG 0.481704 2:-25457222 None:intergenic
TTGACTGGTTGGTTTGATCT+CGG 0.484231 2:+25458015 MsG0280008098.01.T01:CDS
CCAGGAACCGTTCAATTGAC+TGG 0.494151 2:+25458000 MsG0280008098.01.T01:intron
ACTTTGAGAGGTTCCATCCC+TGG 0.496805 2:-25457122 None:intergenic
GTTACAGTGCTGAAAGCACC+AGG 0.502114 2:+25457104 MsG0280008098.01.T01:intron
TAGGTGGGATAGACAATGGA+TGG 0.502735 2:+25455079 MsG0280008098.01.T01:CDS
TCCGTACTTAATCGCATCTC+AGG 0.502861 2:+25457558 MsG0280008098.01.T01:CDS
ATGATATTACAGTGTGGGAA+TGG 0.509064 2:+25457174 MsG0280008098.01.T01:CDS
AGCCGTACTCTGAAGACCTA+TGG 0.509530 2:+25457841 MsG0280008098.01.T01:CDS
AATCAAGAGACAGCAAAAGT+TGG 0.511679 2:+25458123 MsG0280008098.01.T01:CDS
TTCATTTGATAGGATTTAGG+TGG 0.515207 2:+25455063 MsG0280008098.01.T01:intron
GAATCTTCTGCTAAGGAGGA+TGG 0.524629 2:+25458344 MsG0280008098.01.T01:CDS
CAGTGTTCATCAAAAGCCTC+AGG 0.529540 2:-25455176 None:intergenic
ACCAAAGCTTGCTTTGGTTG+AGG 0.529657 2:+25455142 MsG0280008098.01.T01:CDS
CTGAAACGATTCATAAGTAT+CGG 0.534032 2:-25457698 None:intergenic
ACTCTCATGAAATACAGGTC+TGG 0.536092 2:+25458162 MsG0280008098.01.T01:CDS
TGGTGCAGTATCCTTGTTGA+AGG 0.538122 2:+25457813 MsG0280008098.01.T01:intron
GGAATGGACTGGCTCTGCAT+GGG 0.543471 2:+25457190 MsG0280008098.01.T01:CDS
TCATTTGATAGGATTTAGGT+GGG 0.543917 2:+25455064 MsG0280008098.01.T01:intron
TTATCTTGAAATCTCTCCAT+AGG 0.544511 2:-25457857 None:intergenic
GAACCGTTCAATTGACTGGT+TGG 0.545432 2:+25458004 MsG0280008098.01.T01:CDS
ACCTGAGATGCGATTAAGTA+CGG 0.548607 2:-25457559 None:intergenic
CTGGATGGAATCTTCTGCTA+AGG 0.555295 2:+25458337 MsG0280008098.01.T01:CDS
TGAGGTTGAATTCCCACCTG+AGG 0.566023 2:+25455160 MsG0280008098.01.T01:CDS
AGCAGATGATATTACAGTGT+GGG 0.567461 2:+25457169 MsG0280008098.01.T01:CDS
GGATGGTTGTGAATTCAAAA+GGG 0.567997 2:+25455096 MsG0280008098.01.T01:CDS
GATTTAGGTGGGATAGACAA+TGG 0.568641 2:+25455075 MsG0280008098.01.T01:CDS
GATGGAATCTTCTGCTAAGG+AGG 0.572447 2:+25458340 MsG0280008098.01.T01:CDS
ATGATACCTGAAGGAGTGAG+TGG 0.591867 2:-25454960 None:intergenic
ACTGGCTCTGCATGGGACGA+AGG 0.593394 2:+25457197 MsG0280008098.01.T01:CDS
TTGTTCAAACAAACTTTGAG+AGG 0.593649 2:-25457134 None:intergenic
AGTGCTGAAAGCACCAGGGA+TGG 0.596777 2:+25457109 MsG0280008098.01.T01:intron
TGTTCATCAAAAGCCTCAGG+TGG 0.613034 2:-25455173 None:intergenic
CCCATAAAGGAATCAGTGGT+AGG 0.613095 2:-25455203 None:intergenic
AATACCCATAAAGGAATCAG+TGG 0.615368 2:-25455207 None:intergenic
TGATATAGTGTGGAACTGGA+TGG 0.619389 2:+25458322 MsG0280008098.01.T01:CDS
GTAGACCCTGATTATGTCGA+GGG 0.620165 2:+25457505 MsG0280008098.01.T01:CDS
GCGGTCCCTCGACATAATCA+GGG 0.622792 2:-25457510 None:intergenic
TGCACTAAACGAGCTTCTAG+AGG 0.628214 2:+25457673 MsG0280008098.01.T01:CDS
CTTGAGAAAGTGAAATTCCA+CGG 0.628682 2:-25454935 None:intergenic
TATCCTGTTAAGTCATGCCG+TGG 0.637857 2:+25454918 MsG0280008098.01.T01:CDS
ACTTTGGTCATGATATAGTG+TGG 0.638612 2:+25458312 MsG0280008098.01.T01:CDS
AGTAGACCCTGATTATGTCG+AGG 0.644567 2:+25457504 MsG0280008098.01.T01:CDS
AAACCAACCAGTCAATTGAA+CGG 0.646206 2:-25458007 None:intergenic
ATTACAGTGTGGGAATGGAC+TGG 0.653012 2:+25457179 MsG0280008098.01.T01:CDS
GTTCATCAAAAGCCTCAGGT+GGG 0.673084 2:-25455172 None:intergenic
AAGGAGCCGAAGCATCGCAG+TGG 0.695660 2:+25457216 MsG0280008098.01.T01:CDS
TAGCAGATGATATTACAGTG+TGG 0.696993 2:+25457168 MsG0280008098.01.T01:CDS
ACGGCTCACAGCCTTCAACA+AGG 0.696996 2:-25457824 None:intergenic
TTACAGTGCTGAAAGCACCA+GGG 0.762056 2:+25457105 MsG0280008098.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATAAAAACAAAAAAA+GGG + Chr2:25458200-25458219 MsG0280008098.01.T01:CDS 10.0%
!!! TAAGATGATATTTTTATATT+TGG + Chr2:25455665-25455684 MsG0280008098.01.T01:intron 10.0%
!! CAAATGATAAAAACAAAAAA+AGG + Chr2:25458199-25458218 MsG0280008098.01.T01:CDS 15.0%
!! TTTCAATTTATTCATTTGAT+AGG + Chr2:25455053-25455072 MsG0280008098.01.T01:intron 15.0%
!!! AATTTTTTGATAACATAAAC+AGG - Chr2:25458392-25458411 None:intergenic 15.0%
!!! CTTTTTTTGTTTTTATCATT+TGG - Chr2:25458201-25458220 None:intergenic 15.0%
!!! TGTCATTTTATTATTCTTAA+AGG - Chr2:25457306-25457325 None:intergenic 15.0%
!!! TGTTTTACTTGAATAAATAA+TGG + Chr2:25455267-25455286 MsG0280008098.01.T01:intron 15.0%
!!! TTAATTTTTTTGTTTTCTCA+TGG - Chr2:25456976-25456995 None:intergenic 15.0%
!! AATATGTAAAATACCCATAA+AGG - Chr2:25455219-25455238 None:intergenic 20.0%
!! GCATGAAAAAATTAATACTT+GGG - Chr2:25457725-25457744 None:intergenic 20.0%
!! TTATTCATTTGATAGGATTT+AGG + Chr2:25455060-25455079 MsG0280008098.01.T01:intron 20.0%
!! TTGATGAAATAAACCTTTAT+GGG + Chr2:25455567-25455586 MsG0280008098.01.T01:intron 20.0%
!! TTTGATGAAATAAACCTTTA+TGG + Chr2:25455566-25455585 MsG0280008098.01.T01:intron 20.0%
!!! ATTATTGATGATGCTTATTA+TGG + Chr2:25458084-25458103 MsG0280008098.01.T01:CDS 20.0%
!!! ATTTGTTTTACATCTTCTTT+TGG - Chr2:25456575-25456594 None:intergenic 20.0%
!!! TCATTGACATTTTTTATCAA+AGG + Chr2:25456150-25456169 MsG0280008098.01.T01:intron 20.0%
!!! TTTTGTATGCTTATCATAAA+AGG + Chr2:25456523-25456542 MsG0280008098.01.T01:intron 20.0%
! AATACTTAGCACAAATAACA+TGG - Chr2:25455935-25455954 None:intergenic 25.0%
! ACTTATCACATAAGAGTTTA+TGG - Chr2:25456840-25456859 None:intergenic 25.0%
! ATAAAAACAAAAAAAGGGTG+AGG + Chr2:25458205-25458224 MsG0280008098.01.T01:intron 25.0%
! CTCAAAAGCTTATAGAAATA+AGG - Chr2:25456777-25456796 None:intergenic 25.0%
! GGCATGAAAAAATTAATACT+TGG - Chr2:25457726-25457745 None:intergenic 25.0%
! TATTTCATGAGAGTTTCATT+TGG - Chr2:25458156-25458175 None:intergenic 25.0%
! TGACAATAACAATGTTTAGA+AGG + Chr2:25457321-25457340 MsG0280008098.01.T01:intron 25.0%
!! GAAGGCTGTAAATATATTTT+TGG - Chr2:25456393-25456412 None:intergenic 25.0%
!!! TATCATTTGGTCTTATGATT+TGG - Chr2:25458188-25458207 None:intergenic 25.0%
AAAGGCTAACTTATGTCTTT+AGG - Chr2:25455706-25455725 None:intergenic 30.0%
AAATCAAAACCATGACAACA+TGG - Chr2:25455519-25455538 None:intergenic 30.0%
AAGAAGAATATGATACCTGA+AGG - Chr2:25454972-25454991 None:intergenic 30.0%
AAGGCTAACTTATGTCTTTA+GGG - Chr2:25455705-25455724 None:intergenic 30.0%
AATCAAAACCATGACAACAT+GGG - Chr2:25455518-25455537 None:intergenic 30.0%
AATTAATGCCTTTCAAGATC+TGG - Chr2:25455748-25455767 None:intergenic 30.0%
ACATTAAATGAGATAAGGTC+TGG + Chr2:25455307-25455326 MsG0280008098.01.T01:intron 30.0%
ACTTGACATTAATGTACAGA+AGG - Chr2:25458263-25458282 None:intergenic 30.0%
AGACCAGATTCTTAAAAGTT+TGG - Chr2:25455384-25455403 None:intergenic 30.0%
AGGTCAGAAGAAGTTAAAAA+TGG - Chr2:25456757-25456776 None:intergenic 30.0%
AGTATGTCAATATTAGAGAC+TGG - Chr2:25456181-25456200 None:intergenic 30.0%
ATGAAACTCTCATGAAATAC+AGG + Chr2:25458157-25458176 MsG0280008098.01.T01:CDS 30.0%
CAAAATTACCTCTATCTTTG+TGG - Chr2:25456036-25456055 None:intergenic 30.0%
CTATGAAACACTAGACAAAA+AGG - Chr2:25457747-25457766 None:intergenic 30.0%
CTGAAACGATTCATAAGTAT+CGG - Chr2:25457701-25457720 None:intergenic 30.0%
CTTGACATTAATGTACAGAA+GGG - Chr2:25458262-25458281 None:intergenic 30.0%
CTTTGTGGATAGAAAAAACA+TGG - Chr2:25456021-25456040 None:intergenic 30.0%
GAAATTAGTGATGTTACATG+TGG + Chr2:25455826-25455845 MsG0280008098.01.T01:intron 30.0%
GACCAGATTCTTAAAAGTTT+GGG - Chr2:25455383-25455402 None:intergenic 30.0%
GATGGAAAAGTCCTTAAATT+GGG + Chr2:25458362-25458381 MsG0280008098.01.T01:CDS 30.0%
GGTCAGAAGAAGTTAAAAAT+GGG - Chr2:25456756-25456775 None:intergenic 30.0%
GTCTCACATTAAATGAGATA+AGG + Chr2:25455302-25455321 MsG0280008098.01.T01:intron 30.0%
TAACTCAAACAACAGTCATA+AGG - Chr2:25456939-25456958 None:intergenic 30.0%
TCATTTGATAGGATTTAGGT+GGG + Chr2:25455064-25455083 MsG0280008098.01.T01:intron 30.0%
TGATTCCTGAAAGTAGTAAA+TGG - Chr2:25457648-25457667 None:intergenic 30.0%
TGGATAGAAAAAACATGGTT+CGG - Chr2:25456016-25456035 None:intergenic 30.0%
TTAATCAACATGACCCATAA+AGG - Chr2:25455583-25455602 None:intergenic 30.0%
TTACTACTTTCAGGAATCAT+TGG + Chr2:25457649-25457668 MsG0280008098.01.T01:intron 30.0%
TTATCTTGAAATCTCTCCAT+AGG - Chr2:25457860-25457879 None:intergenic 30.0%
TTCATTTGATAGGATTTAGG+TGG + Chr2:25455063-25455082 MsG0280008098.01.T01:intron 30.0%
TTGTTCAAACAAACTTTGAG+AGG - Chr2:25457137-25457156 None:intergenic 30.0%
TTTAGGAAATCCTACTAAAC+TGG + Chr2:25457250-25457269 MsG0280008098.01.T01:intron 30.0%
! AACAGTCATAAGGATACTTT+TGG - Chr2:25456929-25456948 None:intergenic 30.0%
! AAGATCTGGAGTACATTTAA+AGG - Chr2:25455734-25455753 None:intergenic 30.0%
! ACAGTCATAAGGATACTTTT+GGG - Chr2:25456928-25456947 None:intergenic 30.0%
! ATAAGCAGGTTTTCATTTCA+GGG + Chr2:25457876-25457895 MsG0280008098.01.T01:CDS 30.0%
! GATTCTTAAAAGTTTGGGTT+TGG - Chr2:25455378-25455397 None:intergenic 30.0%
! GTCTGGACATAAGTTTTTAA+GGG + Chr2:25455324-25455343 MsG0280008098.01.T01:intron 30.0%
! TCAATCACTTGCTTAATTTG+TGG - Chr2:25456712-25456731 None:intergenic 30.0%
! TTTTCTATCCACAAAGATAG+AGG + Chr2:25456025-25456044 MsG0280008098.01.T01:intron 30.0%
!! AACCCAAACTTTTAAGAATC+TGG + Chr2:25455378-25455397 MsG0280008098.01.T01:intron 30.0%
!! AATCACTTGCTTAATTTGTG+GGG - Chr2:25456710-25456729 None:intergenic 30.0%
!! AGATAGAGGTAATTTTGAAG+TGG + Chr2:25456039-25456058 MsG0280008098.01.T01:intron 30.0%
!! CAATCACTTGCTTAATTTGT+GGG - Chr2:25456711-25456730 None:intergenic 30.0%
!! CACTCATTTTGAAAATGACA+AGG - Chr2:25456664-25456683 None:intergenic 30.0%
!! TCATTTTGAAAATGACAAGG+AGG - Chr2:25456661-25456680 None:intergenic 30.0%
!! TCTGGACATAAGTTTTTAAG+GGG + Chr2:25455325-25455344 MsG0280008098.01.T01:intron 30.0%
!!! GATAGAGGTAATTTTGAAGT+GGG + Chr2:25456040-25456059 MsG0280008098.01.T01:intron 30.0%
AAAAGACAGATGTTACAGCT+GGG + Chr2:25456449-25456468 MsG0280008098.01.T01:intron 35.0%
AAACAGGATCTCCCAATTTA+AGG - Chr2:25458376-25458395 None:intergenic 35.0%
AAACCAACCAGTCAATTGAA+CGG - Chr2:25458010-25458029 None:intergenic 35.0%
AATACCCATAAAGGAATCAG+TGG - Chr2:25455210-25455229 None:intergenic 35.0%
AATCAAGAGACAGCAAAAGT+TGG + Chr2:25458123-25458142 MsG0280008098.01.T01:CDS 35.0%
AATGTACTCCAGATCTTGAA+AGG + Chr2:25455737-25455756 MsG0280008098.01.T01:intron 35.0%
ACAAAAAGCAGTCATGATCA+TGG - Chr2:25457039-25457058 None:intergenic 35.0%
ACTTTGGTCATGATATAGTG+TGG + Chr2:25458312-25458331 MsG0280008098.01.T01:CDS 35.0%
AGCAGATGATATTACAGTGT+GGG + Chr2:25457169-25457188 MsG0280008098.01.T01:CDS 35.0%
ATATGAAATGCTTGTGTTGC+AGG + Chr2:25458286-25458305 MsG0280008098.01.T01:intron 35.0%
ATCAAAACCATGACAACATG+GGG - Chr2:25455517-25455536 None:intergenic 35.0%
ATGATATTACAGTGTGGGAA+TGG + Chr2:25457174-25457193 MsG0280008098.01.T01:CDS 35.0%
CAAACACGACATTGATAAGT+TGG - Chr2:25456257-25456276 None:intergenic 35.0%
CAGTGGTTCTCAGATTATTT+AGG + Chr2:25457233-25457252 MsG0280008098.01.T01:intron 35.0%
CATATGCATGTTATGCACAA+TGG + Chr2:25457391-25457410 MsG0280008098.01.T01:intron 35.0%
CATGAAACATGACATGGATT+AGG + Chr2:25455854-25455873 MsG0280008098.01.T01:intron 35.0%
CTAATCCATGTCATGTTTCA+TGG - Chr2:25455856-25455875 None:intergenic 35.0%
CTGGAGTACATTTAAAGGTT+GGG - Chr2:25455729-25455748 None:intergenic 35.0%
CTTGAGAAAGTGAAATTCCA+CGG - Chr2:25454938-25454957 None:intergenic 35.0%
GGATGGAAAAGTCCTTAAAT+TGG + Chr2:25458361-25458380 MsG0280008098.01.T01:CDS 35.0%
GGATGGTTGTGAATTCAAAA+GGG + Chr2:25455096-25455115 MsG0280008098.01.T01:CDS 35.0%
GGTATATCCTTTCAAAGTAG+TGG + Chr2:25456482-25456501 MsG0280008098.01.T01:intron 35.0%
GTACATTTAAAGGTTGGGAA+AGG - Chr2:25455724-25455743 None:intergenic 35.0%
GTTTGAATTGAATGTGCATG+TGG - Chr2:25456896-25456915 None:intergenic 35.0%
TAGAACTGTTCACCTTACAA+CGG - Chr2:25457917-25457936 None:intergenic 35.0%
TAGCAGATGATATTACAGTG+TGG + Chr2:25457168-25457187 MsG0280008098.01.T01:CDS 35.0%
TCGATAAAAGAGACTAACAC+AGG + Chr2:25456343-25456362 MsG0280008098.01.T01:intron 35.0%
TGGATGGTTGTGAATTCAAA+AGG + Chr2:25455095-25455114 MsG0280008098.01.T01:CDS 35.0%
! ACAGCCAATGATGTTGATTA+GGG - Chr2:25456069-25456088 None:intergenic 35.0%
! ACTTGCCATTTACTACTTTC+AGG + Chr2:25457640-25457659 MsG0280008098.01.T01:intron 35.0%
! AGATCACACAACTGAGATTT+TGG + Chr2:25457783-25457802 MsG0280008098.01.T01:intron 35.0%
! AGCCTTCTAGTTAATTCCAA+GGG + Chr2:25456406-25456425 MsG0280008098.01.T01:intron 35.0%
! ATAGAAAAAACATGGTTCGG+AGG - Chr2:25456013-25456032 None:intergenic 35.0%
! ATGAGAGTTTCATTTGGTTC+AGG - Chr2:25458150-25458169 None:intergenic 35.0%
! GATAAGCAGGTTTTCATTTC+AGG + Chr2:25457875-25457894 MsG0280008098.01.T01:CDS 35.0%
! GGTCTGGACATAAGTTTTTA+AGG + Chr2:25455323-25455342 MsG0280008098.01.T01:intron 35.0%
! TCTGGAGTACATTTAAAGGT+TGG - Chr2:25455730-25455749 None:intergenic 35.0%
!! CTAATATAGCTTTTTCCCCT+TGG - Chr2:25456425-25456444 None:intergenic 35.0%
!! CTGGACATAAGTTTTTAAGG+GGG + Chr2:25455326-25455345 MsG0280008098.01.T01:intron 35.0%
!! TTTTAAGAATCTGGTCTGAG+TGG + Chr2:25455387-25455406 MsG0280008098.01.T01:intron 35.0%
AACAAGGATACTGCACCATA+TGG - Chr2:25457811-25457830 None:intergenic 40.0%
ACACCTGAAGCTAAAGTTAC+AGG + Chr2:25454885-25454904 MsG0280008098.01.T01:CDS 40.0%
ACCTGAGATGCGATTAAGTA+CGG - Chr2:25457562-25457581 None:intergenic 40.0%
ACTCTCATGAAATACAGGTC+TGG + Chr2:25458162-25458181 MsG0280008098.01.T01:CDS 40.0%
ATTGGCTGTCATTACACACA+TGG + Chr2:25456080-25456099 MsG0280008098.01.T01:intron 40.0%
GAAAAGACAGATGTTACAGC+TGG + Chr2:25456448-25456467 MsG0280008098.01.T01:intron 40.0%
GAATGCCATGAAACATGACA+TGG + Chr2:25455848-25455867 MsG0280008098.01.T01:intron 40.0%
GATTTAGGTGGGATAGACAA+TGG + Chr2:25455075-25455094 MsG0280008098.01.T01:CDS 40.0%
GCATCCCTAATCAACATCAT+TGG + Chr2:25456062-25456081 MsG0280008098.01.T01:intron 40.0%
GCTGTCTCTTGATTGATTGT+TGG - Chr2:25458117-25458136 None:intergenic 40.0%
GGAGAGATTTCAAGATAAGC+AGG + Chr2:25457862-25457881 MsG0280008098.01.T01:CDS 40.0%
GTCACCCAACAAAGATTAGT+CGG - Chr2:25455972-25455991 None:intergenic 40.0%
GTCATGATATAGTGTGGAAC+TGG + Chr2:25458318-25458337 MsG0280008098.01.T01:CDS 40.0%
TCAAAACCATGACAACATGG+GGG - Chr2:25455516-25455535 None:intergenic 40.0%
TCCCCTTGGAATTAACTAGA+AGG - Chr2:25456411-25456430 None:intergenic 40.0%
TGATATAGTGTGGAACTGGA+TGG + Chr2:25458322-25458341 MsG0280008098.01.T01:CDS 40.0%
! AGTTGAACCAAAGCTTGCTT+TGG + Chr2:25455136-25455155 MsG0280008098.01.T01:CDS 40.0%
! ATGCCTGTAACTTTAGCTTC+AGG - Chr2:25454891-25454910 None:intergenic 40.0%
! CAGCCTTCTAGTTAATTCCA+AGG + Chr2:25456405-25456424 MsG0280008098.01.T01:intron 40.0%
! CGACATTGATAAGTTGGCAA+CGG - Chr2:25456251-25456270 None:intergenic 40.0%
! GACAGCCAATGATGTTGATT+AGG - Chr2:25456070-25456089 None:intergenic 40.0%
! GCCTTCTAGTTAATTCCAAG+GGG + Chr2:25456407-25456426 MsG0280008098.01.T01:intron 40.0%
! GTCACCGACTAATCTTTGTT+GGG + Chr2:25455965-25455984 MsG0280008098.01.T01:intron 40.0%
! GTGGTCATGAGTTTGATTTC+TGG + Chr2:25455433-25455452 MsG0280008098.01.T01:intron 40.0%
! TGAGGCTTTTGATGAACACT+GGG + Chr2:25455178-25455197 MsG0280008098.01.T01:CDS 40.0%
! TGTCACCGACTAATCTTTGT+TGG + Chr2:25455964-25455983 MsG0280008098.01.T01:intron 40.0%
!! ACATGACATGGATTAGGTGT+AGG + Chr2:25455860-25455879 MsG0280008098.01.T01:intron 40.0%
!! ACCTACCACTGATTCCTTTA+TGG + Chr2:25455202-25455221 MsG0280008098.01.T01:CDS 40.0%
!! ATAAGTTTTTAAGGGGGAGC+TGG + Chr2:25455332-25455351 MsG0280008098.01.T01:intron 40.0%
!! CATGACATGGATTAGGTGTA+GGG + Chr2:25455861-25455880 MsG0280008098.01.T01:intron 40.0%
!! CCTACCACTGATTCCTTTAT+GGG + Chr2:25455203-25455222 MsG0280008098.01.T01:CDS 40.0%
!! CTAACTTCTGAAGCTGCATT+TGG - Chr2:25457481-25457500 None:intergenic 40.0%
!! TTGACTGGTTGGTTTGATCT+CGG + Chr2:25458015-25458034 MsG0280008098.01.T01:CDS 40.0%
!!! ACTGAGATTTTGGTGCCATA+TGG + Chr2:25457793-25457812 MsG0280008098.01.T01:intron 40.0%
AAAAAGCGAGCTGAACCAAC+CGG + Chr2:25457963-25457982 MsG0280008098.01.T01:intron 45.0%
AAACTGGTCCGCTTCAATAC+TGG + Chr2:25457266-25457285 MsG0280008098.01.T01:intron 45.0%
ACAAAACAGCCCTACTAGAC+AGG - Chr2:25456509-25456528 None:intergenic 45.0%
ACCATCAATCCCTACGTCAA+TGG + Chr2:25456104-25456123 MsG0280008098.01.T01:intron 45.0%
ACCATTGACGTAGGGATTGA+TGG - Chr2:25456108-25456127 None:intergenic 45.0%
ACCTCAACCAAAGCAAGCTT+TGG - Chr2:25455146-25455165 None:intergenic 45.0%
AGCCATCACTGAAAAAGGTC+TGG - Chr2:25457537-25457556 None:intergenic 45.0%
AGTAGACCCTGATTATGTCG+AGG + Chr2:25457504-25457523 MsG0280008098.01.T01:CDS 45.0%
ATATGCGTCACCATTGACGT+AGG - Chr2:25456117-25456136 None:intergenic 45.0%
ATGATACCTGAAGGAGTGAG+TGG - Chr2:25454963-25454982 None:intergenic 45.0%
ATTACAGTGTGGGAATGGAC+TGG + Chr2:25457179-25457198 MsG0280008098.01.T01:CDS 45.0%
ATTCCACGGCATGACTTAAC+AGG - Chr2:25454924-25454943 None:intergenic 45.0%
CAACGAGTCTCTTAAGCATG+TGG + Chr2:25455414-25455433 MsG0280008098.01.T01:intron 45.0%
CAAGCTGTGTTACCGTTGTA+AGG + Chr2:25457902-25457921 MsG0280008098.01.T01:intron 45.0%
CAGTGTTCATCAAAAGCCTC+AGG - Chr2:25455179-25455198 None:intergenic 45.0%
CCCATAAAGGAATCAGTGGT+AGG - Chr2:25455206-25455225 None:intergenic 45.0%
CGGATAGCCATCACTGAAAA+AGG - Chr2:25457542-25457561 None:intergenic 45.0%
CTCCATAGGTCTTCAGAGTA+CGG - Chr2:25457846-25457865 None:intergenic 45.0%
CTGGATGGAATCTTCTGCTA+AGG + Chr2:25458337-25458356 MsG0280008098.01.T01:CDS 45.0%
CTTACAACGGTAACACAGCT+TGG - Chr2:25457904-25457923 None:intergenic 45.0%
CTTGTGTTGCAGGTCTACTT+TGG + Chr2:25458296-25458315 MsG0280008098.01.T01:intron 45.0%
GAACCGTTCAATTGACTGGT+TGG + Chr2:25458004-25458023 MsG0280008098.01.T01:CDS 45.0%
GAATCTTCTGCTAAGGAGGA+TGG + Chr2:25458344-25458363 MsG0280008098.01.T01:CDS 45.0%
GACAGGTCCACTACTTTGAA+AGG - Chr2:25456492-25456511 None:intergenic 45.0%
GATGGAATCTTCTGCTAAGG+AGG + Chr2:25458340-25458359 MsG0280008098.01.T01:CDS 45.0%
GTAGACCCTGATTATGTCGA+GGG + Chr2:25457505-25457524 MsG0280008098.01.T01:CDS 45.0%
GTTCATCAAAAGCCTCAGGT+GGG - Chr2:25455175-25455194 None:intergenic 45.0%
GTTGGGTGACAACCTTTAGA+AGG + Chr2:25455982-25456001 MsG0280008098.01.T01:intron 45.0%
TAGGTGGGATAGACAATGGA+TGG + Chr2:25455079-25455098 MsG0280008098.01.T01:CDS 45.0%
TATCCTGTTAAGTCATGCCG+TGG + Chr2:25454918-25454937 MsG0280008098.01.T01:CDS 45.0%
TATGCGTCACCATTGACGTA+GGG - Chr2:25456116-25456135 None:intergenic 45.0%
TCACTGAAAAAGGTCTGGTG+CGG - Chr2:25457532-25457551 None:intergenic 45.0%
TCCGTACTTAATCGCATCTC+AGG + Chr2:25457558-25457577 MsG0280008098.01.T01:CDS 45.0%
TGAACGGTTCCTGGTTCAAT+AGG - Chr2:25457994-25458013 None:intergenic 45.0%
TGCACTAAACGAGCTTCTAG+AGG + Chr2:25457673-25457692 MsG0280008098.01.T01:CDS 45.0%
TGGTGCAGTATCCTTGTTGA+AGG + Chr2:25457813-25457832 MsG0280008098.01.T01:intron 45.0%
TGTTCATCAAAAGCCTCAGG+TGG - Chr2:25455176-25455195 None:intergenic 45.0%
TTGAAGCGGACCAGTTTAGT+AGG - Chr2:25457263-25457282 None:intergenic 45.0%
! ACCAAAGCTTGCTTTGGTTG+AGG + Chr2:25455142-25455161 MsG0280008098.01.T01:CDS 45.0%
! AGACGCTACCAGTATTGAAG+CGG - Chr2:25457277-25457296 None:intergenic 45.0%
! CCTGGTTCAATAGGTTGAAC+CGG - Chr2:25457985-25458004 None:intergenic 45.0%
! CTGAGGCTTTTGATGAACAC+TGG + Chr2:25455177-25455196 MsG0280008098.01.T01:CDS 45.0%
! CTTTGTTTCCCAACTGCAAC+TGG - Chr2:25457589-25457608 None:intergenic 45.0%
! GTTCAATAGGTTGAACCGGT+TGG - Chr2:25457981-25458000 None:intergenic 45.0%
!! AAGTAGTGGACCTGTCTAGT+AGG + Chr2:25456496-25456515 MsG0280008098.01.T01:intron 45.0%
!! ACATGGATTAGGTGTAGGGA+AGG + Chr2:25455865-25455884 MsG0280008098.01.T01:intron 45.0%
!! AGTAGTGGACCTGTCTAGTA+GGG + Chr2:25456497-25456516 MsG0280008098.01.T01:intron 45.0%
!! ATGGATTAGGTGTAGGGAAG+GGG + Chr2:25455867-25455886 MsG0280008098.01.T01:intron 45.0%
!! CATGGATTAGGTGTAGGGAA+GGG + Chr2:25455866-25455885 MsG0280008098.01.T01:intron 45.0%
!! TTACAGTGCTGAAAGCACCA+GGG + Chr2:25457105-25457124 MsG0280008098.01.T01:intron 45.0%
!!! CACCAGACCTTTTTCAGTGA+TGG + Chr2:25457532-25457551 MsG0280008098.01.T01:CDS 45.0%
AGGTCAGTCCAGTTGCAGTT+GGG + Chr2:25457578-25457597 MsG0280008098.01.T01:intron 50.0%
ATTAGGTGTAGGGAAGGGGT+GGG + Chr2:25455871-25455890 MsG0280008098.01.T01:intron 50.0%
CAAGTACCCCCATGTTGTCA+TGG + Chr2:25455507-25455526 MsG0280008098.01.T01:intron 50.0%
CAGATGTTACAGCTGGGTAG+AGG + Chr2:25456455-25456474 MsG0280008098.01.T01:intron 50.0%
CCAGGAACCGTTCAATTGAC+TGG + Chr2:25458000-25458019 MsG0280008098.01.T01:intron 50.0%
CCAGTCAATTGAACGGTTCC+TGG - Chr2:25458003-25458022 None:intergenic 50.0%
CCGGTTCAACCTATTGAACC+AGG + Chr2:25457982-25458001 MsG0280008098.01.T01:intron 50.0%
GAGACATGAGAAGGAGATGG+AGG + Chr2:25455893-25455912 MsG0280008098.01.T01:intron 50.0%
TCGGAGGAGAGACCTTCTAA+AGG - Chr2:25455997-25456016 None:intergenic 50.0%
TGAGAACCACTGCGATGCTT+CGG - Chr2:25457225-25457244 None:intergenic 50.0%
TGAGGTTGAATTCCCACCTG+AGG + Chr2:25455160-25455179 MsG0280008098.01.T01:CDS 50.0%
TGGGAGACATGAGAAGGAGA+TGG + Chr2:25455890-25455909 MsG0280008098.01.T01:intron 50.0%
TTACAGCTGGGTAGAGGACA+AGG + Chr2:25456461-25456480 MsG0280008098.01.T01:intron 50.0%
! ACTTTGAGAGGTTCCATCCC+TGG - Chr2:25457125-25457144 None:intergenic 50.0%
! AGCCGTACTCTGAAGACCTA+TGG + Chr2:25457841-25457860 MsG0280008098.01.T01:CDS 50.0%
!! GTTACAGTGCTGAAAGCACC+AGG + Chr2:25457104-25457123 MsG0280008098.01.T01:intron 50.0%
!!! TAAGGGGGAGCTGGTTTTGT+TGG + Chr2:25455341-25455360 MsG0280008098.01.T01:intron 50.0%
AAGGGGTGGGAGACATGAGA+AGG + Chr2:25455884-25455903 MsG0280008098.01.T01:intron 55.0%
ACGGCTCACAGCCTTCAACA+AGG - Chr2:25457827-25457846 None:intergenic 55.0%
CAAGCTCCACTCACTCCTTC+AGG + Chr2:25454954-25454973 MsG0280008098.01.T01:CDS 55.0%
CAGGTCAGTCCAGTTGCAGT+TGG + Chr2:25457577-25457596 MsG0280008098.01.T01:intron 55.0%
GATTAGGTGTAGGGAAGGGG+TGG + Chr2:25455870-25455889 MsG0280008098.01.T01:intron 55.0%
GCGGTCCCTCGACATAATCA+GGG - Chr2:25457513-25457532 None:intergenic 55.0%
TGCGGTCCCTCGACATAATC+AGG - Chr2:25457514-25457533 None:intergenic 55.0%
! GTGGGGCTGTTGATGAGTAG+TGG - Chr2:25456693-25456712 None:intergenic 55.0%
!! AGTGCTGAAAGCACCAGGGA+TGG + Chr2:25457109-25457128 MsG0280008098.01.T01:intron 55.0%
!! GGAATGGACTGGCTCTGCAT+GGG + Chr2:25457190-25457209 MsG0280008098.01.T01:CDS 55.0%
!! AAGGAGCCGAAGCATCGCAG+TGG + Chr2:25457216-25457235 MsG0280008098.01.T01:CDS 60.0%
!! ACTGGCTCTGCATGGGACGA+AGG + Chr2:25457197-25457216 MsG0280008098.01.T01:CDS 60.0%
!! GGGAATGGACTGGCTCTGCA+TGG + Chr2:25457189-25457208 MsG0280008098.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 25454846 25458439 25454846 ID=MsG0280008098.01;Name=MsG0280008098.01
Chr2 mRNA 25454846 25458439 25454846 ID=MsG0280008098.01.T01;Parent=MsG0280008098.01;Name=MsG0280008098.01.T01;_AED=0.48;_eAED=0.50;_QI=0|0.8|0.63|1|0.7|0.54|11|0|349
Chr2 exon 25454846 25454975 25454846 ID=MsG0280008098.01.T01:exon:3283;Parent=MsG0280008098.01.T01
Chr2 exon 25455075 25455224 25455075 ID=MsG0280008098.01.T01:exon:3284;Parent=MsG0280008098.01.T01
Chr2 exon 25457111 25457237 25457111 ID=MsG0280008098.01.T01:exon:3285;Parent=MsG0280008098.01.T01
Chr2 exon 25457429 25457579 25457429 ID=MsG0280008098.01.T01:exon:3286;Parent=MsG0280008098.01.T01
Chr2 exon 25457662 25457726 25457662 ID=MsG0280008098.01.T01:exon:3287;Parent=MsG0280008098.01.T01
Chr2 exon 25457821 25457897 25457821 ID=MsG0280008098.01.T01:exon:3288;Parent=MsG0280008098.01.T01
Chr2 exon 25458004 25458221 25458004 ID=MsG0280008098.01.T01:exon:3289;Parent=MsG0280008098.01.T01
Chr2 exon 25458308 25458439 25458308 ID=MsG0280008098.01.T01:exon:3290;Parent=MsG0280008098.01.T01
Chr2 CDS 25454846 25454975 25454846 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25455075 25455224 25455075 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25457111 25457237 25457111 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25457429 25457579 25457429 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25457662 25457726 25457662 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25457821 25457897 25457821 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25458004 25458221 25458004 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Chr2 CDS 25458308 25458439 25458308 ID=MsG0280008098.01.T01:cds;Parent=MsG0280008098.01.T01
Gene Sequence

>MsG0280008098.01.T01

ATGAGTGTTGCAGCTTCAAAATCTGTAACAGAATCAGCAACACCTGAAGCTAAAGTTACAGGCATTTTCGTATATCCTGTTAAGTCATGCCGTGGAATTTCACTTTCTCAAGCTCCACTCACTCCTTCAGGATTTAGGTGGGATAGACAATGGATGGTTGTGAATTCAAAAGGGAGAGCATGTACTCAAAGAGTTGAACCAAAGCTTGCTTTGGTTGAGGTTGAATTCCCACCTGAGGCTTTTGATGAACACTGGGAACCTACCACTGATTCCTTTATGGTGCTGAAAGCACCAGGGATGGAACCTCTCAAAGTTTGTTTGAACAAACAGTATGAAGTAGCAGATGATATTACAGTGTGGGAATGGACTGGCTCTGCATGGGACGAAGGAGCCGAAGCATCGCAGTGTCGCACTGTGCATGACATAAATAACAACGATAACTCTCGAATAATGTTTCCAAATGCAGCTTCAGAAGTTAGAAAAGTAGACCCTGATTATGTCGAGGGACCGCACCAGACCTTTTTCAGTGATGGCTATCCGTACTTAATCGCATCTCAGGAATCATTGGATGCACTAAACGAGCTTCTAGAGGAACCGATACTTATGAATCGTTTCAGACCCAATATCCTTGTTGAAGGCTGTGAGCCGTACTCTGAAGACCTATGGAGAGATTTCAAGATAAGCAGGTTTTCATTTCAGGGAACCGTTCAATTGACTGGTTGGTTTGATCTCGGTTACATTAATCTGAGAATACATGCTAATAGCATTTATCTAACGTGCATTATTGATGATGCTTATTATGGTAAGATTCCAACAATCAATCAAGAGACAGCAAAAGTTGGACCTGAACCAAATGAAACTCTCATGAAATACAGGTCTGGCCAAATCATAAGACCAAATGATAAAAACAAAAAAAGGGTCTACTTTGGTCATGATATAGTGTGGAACTGGATGGAATCTTCTGCTAAGGAGGATGGAAAAGTCCTTAAATTGGGAGATCCTGTTTATGTTATCAAAAAATTCTCTTCTCCAGCAGAAGCAGCTGCTTAA

Protein sequence

>MsG0280008098.01.T01

MSVAASKSVTESATPEAKVTGIFVYPVKSCRGISLSQAPLTPSGFRWDRQWMVVNSKGRACTQRVEPKLALVEVEFPPEAFDEHWEPTTDSFMVLKAPGMEPLKVCLNKQYEVADDITVWEWTGSAWDEGAEASQCRTVHDINNNDNSRIMFPNAASEVRKVDPDYVEGPHQTFFSDGYPYLIASQESLDALNELLEEPILMNRFRPNILVEGCEPYSEDLWRDFKISRFSFQGTVQLTGWFDLGYINLRIHANSIYLTCIIDDAYYGKIPTINQETAKVGPEPNETLMKYRSGQIIRPNDKNKKRVYFGHDIVWNWMESSAKEDGKVLKLGDPVYVIKKFSSPAEAAA*