AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025055.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025055.01.T01 MTR_5g021650 92.373 354 23 1 1 354 607 956 0.0 638
MsG0580025055.01.T01 MTR_8g076190 52.815 373 135 9 1 354 789 1139 2.92e-117 365
MsG0580025055.01.T01 MTR_8g076190 52.815 373 135 9 1 354 796 1146 4.12e-117 365
MsG0580025055.01.T01 MTR_4g071900 41.438 292 150 5 37 315 555 838 1.06e-59 206
MsG0580025055.01.T01 MTR_3g113110 55.056 178 79 1 173 349 1341 1518 9.51e-57 199
MsG0580025055.01.T01 MTR_6g082470 44.865 185 84 3 167 339 771 949 1.33e-42 158
MsG0580025055.01.T01 MTR_4g124650 37.634 186 112 1 172 353 852 1037 2.66e-34 134
MsG0580025055.01.T01 MTR_8g076190 44.304 158 65 4 1 141 789 940 6.22e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025055.01.T01 AT3G51150 37.433 374 184 6 8 344 682 1042 1.25e-64 221
MsG0580025055.01.T01 AT3G51150 37.297 370 192 6 8 344 529 891 2.63e-64 219
MsG0580025055.01.T01 AT3G51150 37.297 370 192 6 8 344 682 1044 6.33e-64 219
MsG0580025055.01.T01 AT3G51150 37.297 370 192 6 8 344 682 1044 6.33e-64 219
MsG0580025055.01.T01 AT3G51150 37.297 370 192 6 8 344 682 1044 6.33e-64 219
MsG0580025055.01.T01 AT2G21300 41.522 289 149 5 66 344 576 854 1.60e-61 211
MsG0580025055.01.T01 AT2G21300 41.522 289 149 5 66 344 576 854 1.60e-61 211
MsG0580025055.01.T01 AT2G21300 41.522 289 149 5 66 344 576 854 1.60e-61 211
MsG0580025055.01.T01 AT2G21300 41.522 289 149 5 66 344 576 854 1.60e-61 211
MsG0580025055.01.T01 AT2G21300 41.522 289 149 5 66 344 576 854 1.60e-61 211
MsG0580025055.01.T01 AT4G38950 41.237 291 140 6 66 344 557 828 2.38e-55 194
MsG0580025055.01.T01 AT4G38950 41.237 291 140 6 66 344 557 828 2.38e-55 194
MsG0580025055.01.T01 AT4G38950 41.237 291 140 6 66 344 557 828 2.38e-55 194
MsG0580025055.01.T01 AT4G38950 41.237 291 140 6 66 344 557 828 2.38e-55 194
MsG0580025055.01.T01 AT4G38950 41.237 291 140 6 66 344 557 828 2.38e-55 194
MsG0580025055.01.T01 AT5G66310 36.612 366 176 10 11 335 693 1043 4.33e-55 194
MsG0580025055.01.T01 AT5G66310 36.612 366 176 10 11 335 693 1043 4.33e-55 194
MsG0580025055.01.T01 AT5G66310 36.612 366 176 10 11 335 693 1043 4.33e-55 194
MsG0580025055.01.T01 AT5G42490 53.333 180 77 2 174 353 911 1083 7.71e-55 194
MsG0580025055.01.T01 AT5G42490 53.333 180 77 2 174 353 907 1079 8.61e-55 194
MsG0580025055.01.T01 AT3G43210 43.005 193 104 4 164 350 743 935 3.61e-43 160
MsG0580025055.01.T01 AT3G43210 43.005 193 104 4 164 350 743 935 3.61e-43 160
MsG0580025055.01.T01 AT3G43210 43.005 193 104 4 164 350 743 935 3.61e-43 160
MsG0580025055.01.T01 AT3G43210 43.005 193 104 4 164 350 743 935 3.61e-43 160
MsG0580025055.01.T01 AT3G43210 43.005 193 104 4 164 350 743 935 3.61e-43 160
MsG0580025055.01.T01 AT1G18370 43.617 188 101 3 162 344 778 965 7.97e-42 156
MsG0580025055.01.T01 AT4G24170 46.154 182 85 3 174 353 830 1000 1.58e-40 152
MsG0580025055.01.T01 AT4G24170 46.154 182 85 3 174 353 830 1000 1.58e-40 152

Find 71 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGTTACCTTGTTTC+AGG 0.160376 5:-13332003 None:intergenic
AAAAGGAGATTATTGAACTA+TGG 0.244944 5:+13331815 MsG0580025055.01.T01:CDS
TCTTAAGAGATTGAATTTAC+TGG 0.284847 5:+13331050 MsG0580025055.01.T01:CDS
GTAATGTTTCATTGGTTCAT+AGG 0.289617 5:+13331845 MsG0580025055.01.T01:CDS
ATTAGATTCTATTTATTTAG+AGG 0.306371 5:+13331900 MsG0580025055.01.T01:CDS
TACATTCTTTGTAGACATAA+TGG 0.323567 5:-13331716 None:intergenic
TGCAGTTAGCACATCATCTA+TGG 0.340226 5:+13332507 MsG0580025055.01.T01:CDS
AGAGCTTGTTCTGGCTCTAC+TGG 0.346178 5:-13332593 None:intergenic
TCTAAATAAATAGAATCTAA+TGG 0.347156 5:-13331898 None:intergenic
CAAGCTCTTAAGGAAATGTT+TGG 0.348356 5:+13332608 MsG0580025055.01.T01:CDS
ATTGTAAATGTGTTATTGTA+AGG 0.358645 5:+13332811 MsG0580025055.01.T01:three_prime_UTR
CTTTCTCCATCAGCTTGCAT+TGG 0.369045 5:-13331757 None:intergenic
TTATATAATGTAACCATACT+TGG 0.375480 5:-13332864 None:intergenic
TACTTCAGACTCTCCAAGTA+TGG 0.378648 5:+13332851 MsG0580025055.01.T01:three_prime_UTR
TGTTACCTTGTTTCAGGGTA+AGG 0.387204 5:-13331997 None:intergenic
GAGAGGACTTATACATGAAA+TGG 0.396807 5:+13332453 MsG0580025055.01.T01:CDS
TTTCTCCATCAGCTTGCATT+GGG 0.398680 5:-13331756 None:intergenic
CAGCCAAGGAGTACTACTTT+CGG 0.400385 5:-13330716 None:intergenic
TGAAGAATTTACCTTCTGAT+TGG 0.401096 5:+13330827 MsG0580025055.01.T01:CDS
AGAGCCAGAACAAGCTCTTA+AGG 0.409492 5:+13332598 MsG0580025055.01.T01:CDS
GGATGCTTGTAATGTTTCAT+TGG 0.414289 5:+13331837 MsG0580025055.01.T01:CDS
TGCAGCAGTTGTTGCCAAAC+TGG 0.415555 5:+13332565 MsG0580025055.01.T01:CDS
CTCTACTGGACCAACCAGTT+TGG 0.425235 5:-13332579 None:intergenic
GAGCAAAATATTCACGCAAA+TGG 0.429111 5:-13330684 None:intergenic
GAATGTAAAAGACATTGGTT+TGG 0.440389 5:+13331732 MsG0580025055.01.T01:CDS
TGAAATGTTACCTTGTTTCA+GGG 0.453233 5:-13332002 None:intergenic
AAATGCTGAGAGGAATTCTA+TGG 0.455800 5:+13330960 MsG0580025055.01.T01:CDS
GAAATTTAAGAGGCTTCAAA+AGG 0.460206 5:+13331798 MsG0580025055.01.T01:CDS
TAGCTTTACAACTTCTACTT+CGG 0.463524 5:-13330798 None:intergenic
AGTGGCCTTCGAAATTTAAG+AGG 0.464479 5:+13331788 MsG0580025055.01.T01:CDS
AAAGGAGATTATTGAACTAT+GGG 0.466022 5:+13331816 MsG0580025055.01.T01:CDS
AGCCAAGGAGTACTACTTTC+GGG 0.474366 5:-13330715 None:intergenic
GGTCTTTCACAAACAGTATG+AGG 0.474791 5:+13332675 MsG0580025055.01.T01:CDS
ATTTAGAGGTAGAGCACAGA+AGG 0.483481 5:+13331914 MsG0580025055.01.T01:CDS
GATTTCCTACTTGTGGACCT+TGG 0.488164 5:-13332644 None:intergenic
ACTAAAAGATTTCCTACTTG+TGG 0.492498 5:-13332651 None:intergenic
AAGCTCTTAAGGAAATGTTT+GGG 0.500701 5:+13332609 MsG0580025055.01.T01:CDS
GTTACCTTGTTTCAGGGTAA+GGG 0.506012 5:-13331996 None:intergenic
GACAGGTTCCGGGATAGGAT+TGG 0.510406 5:+13331690 MsG0580025055.01.T01:intron
TGCATGACAGGTTCCGGGAT+AGG 0.516872 5:+13331685 MsG0580025055.01.T01:intron
ACCTGAGGGATTTCTGAAGA+AGG 0.517335 5:+13330915 MsG0580025055.01.T01:CDS
TGAAGCCTCTTAAATTTCGA+AGG 0.519980 5:-13331793 None:intergenic
ATGGATCCCCTTTGAAGAGA+AGG 0.520371 5:-13331879 None:intergenic
ATTTCCTTAAGAGCTTGTTC+TGG 0.520947 5:-13332602 None:intergenic
CTCCCGAAAGTAGTACTCCT+TGG 0.521802 5:+13330713 MsG0580025055.01.T01:CDS
TTGCTCCAAGGTCCACAAGT+AGG 0.522840 5:+13332639 MsG0580025055.01.T01:CDS
TTCACTTGAATTCAAAACAT+AGG 0.528473 5:+13332480 MsG0580025055.01.T01:CDS
GACTTTGCTGGAAGACCTGA+GGG 0.535305 5:+13330901 MsG0580025055.01.T01:CDS
GGAGTACTACTTTCGGGAGT+CGG 0.539332 5:-13330709 None:intergenic
GCTATCAAAATATGCTAGAG+AGG 0.545360 5:+13332436 MsG0580025055.01.T01:CDS
ACAAAGAATGTAAAAGACAT+TGG 0.546628 5:+13331727 MsG0580025055.01.T01:CDS
GTTCTGCTGCTGATGAAAGT+AGG 0.548556 5:+13330986 MsG0580025055.01.T01:CDS
ACCTTCTTCAGAAATCCCTC+AGG 0.559831 5:-13330916 None:intergenic
ACTTGAATTCAAAACATAGG+AGG 0.570741 5:+13332483 MsG0580025055.01.T01:CDS
GCAGTTGTTGCCAAACTGGT+TGG 0.573272 5:+13332569 MsG0580025055.01.T01:CDS
ATTCAGAATACACCTCCAGT+AGG 0.578167 5:+13330868 MsG0580025055.01.T01:CDS
AATGGCATCCAATCCTATCC+CGG 0.578299 5:-13331698 None:intergenic
GCTGATGAAAGTAGGATCAA+TGG 0.580242 5:+13330994 MsG0580025055.01.T01:CDS
CTATTAAATTCTGTCAGCCA+AGG 0.584201 5:-13330730 None:intergenic
TTGGACCCAATGCAAGCTGA+TGG 0.593472 5:+13331751 MsG0580025055.01.T01:CDS
TTCAGAATACACCTCCAGTA+GGG 0.599577 5:+13330869 MsG0580025055.01.T01:CDS
TCATCTTCAAACCAATCAGA+AGG 0.599938 5:-13330838 None:intergenic
GAATTTACTGGCTGACCATG+AGG 0.622198 5:+13331062 MsG0580025055.01.T01:CDS
AGACTTTGCTGGAAGACCTG+AGG 0.627454 5:+13330900 MsG0580025055.01.T01:CDS
CGGCTCAAGCTCAACCTCGA+CGG 0.629725 5:-13330778 None:intergenic
TGAGATATCTTAGAAGAGAG+AGG 0.630087 5:+13332384 MsG0580025055.01.T01:CDS
ATTATAATGCAAATGCTGAG+AGG 0.658709 5:+13330950 MsG0580025055.01.T01:CDS
AGAACCCTTACCCTGAAACA+AGG 0.670665 5:+13331992 MsG0580025055.01.T01:CDS
GTTCTAGTTCTAGACCGTCG+AGG 0.684214 5:+13330764 MsG0580025055.01.T01:CDS
AATATATAAGAATTATAACA+TGG 0.692798 5:-13332748 None:intergenic
ATGGAGAAAGTCATTCAGAG+TGG 0.730500 5:+13331770 MsG0580025055.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAAGAATTATAACA+TGG - Chr5:13332751-13332770 None:intergenic 10.0%
!! ATTAGATTCTATTTATTTAG+AGG + Chr5:13331900-13331919 MsG0580025055.01.T01:CDS 15.0%
!! CTATATTAATTAATATTACG+AGG + Chr5:13332063-13332082 MsG0580025055.01.T01:intron 15.0%
!! TCTAAATAAATAGAATCTAA+TGG - Chr5:13331901-13331920 None:intergenic 15.0%
!! AGGTAACATTTCAAATATAA+AGG + Chr5:13332012-13332031 MsG0580025055.01.T01:intron 20.0%
!! ATAAACTGAACTTATTACAT+AGG - Chr5:13332154-13332173 None:intergenic 20.0%
!! GTTTATGAGAAATTAGTTAA+GGG - Chr5:13332100-13332119 None:intergenic 20.0%
!! TACATAGATTGTATATTTAG+TGG - Chr5:13332214-13332233 None:intergenic 20.0%
!! TGTTTATGAGAAATTAGTTA+AGG - Chr5:13332101-13332120 None:intergenic 20.0%
!! TTATATAATGTAACCATACT+TGG - Chr5:13332867-13332886 None:intergenic 20.0%
!! TTCAAATGAACAATAAAAAG+TGG - Chr5:13331130-13331149 None:intergenic 20.0%
!!! ATTGTAAATGTGTTATTGTA+AGG + Chr5:13332811-13332830 MsG0580025055.01.T01:three_prime_UTR 20.0%
!!! CATAAGACAAATTTTAAGTT+AGG + Chr5:13331339-13331358 MsG0580025055.01.T01:intron 20.0%
!!! GTTTTGTTAAATTACACTAA+GGG + Chr5:13332034-13332053 MsG0580025055.01.T01:intron 20.0%
!!! TTCAATACAACTAGTTTTTT+TGG - Chr5:13331635-13331654 None:intergenic 20.0%
! AAAAGGAGATTATTGAACTA+TGG + Chr5:13331815-13331834 MsG0580025055.01.T01:CDS 25.0%
! AAAGGAGATTATTGAACTAT+GGG + Chr5:13331816-13331835 MsG0580025055.01.T01:CDS 25.0%
! ACAAAGAATGTAAAAGACAT+TGG + Chr5:13331727-13331746 MsG0580025055.01.T01:CDS 25.0%
! ATGAAGTTGTTAAAATTGAG+TGG - Chr5:13331572-13331591 None:intergenic 25.0%
! TACATTCTTTGTAGACATAA+TGG - Chr5:13331719-13331738 None:intergenic 25.0%
! TCTGTTAAGATTTCAATGTA+GGG + Chr5:13331157-13331176 MsG0580025055.01.T01:intron 25.0%
! TCTTAAGAGATTGAATTTAC+TGG + Chr5:13331050-13331069 MsG0580025055.01.T01:CDS 25.0%
! TTCACTTGAATTCAAAACAT+AGG + Chr5:13332480-13332499 MsG0580025055.01.T01:CDS 25.0%
! TTCTGTTAAGATTTCAATGT+AGG + Chr5:13331156-13331175 MsG0580025055.01.T01:intron 25.0%
!! CTCATAAACATACATTTTTG+TGG + Chr5:13332111-13332130 MsG0580025055.01.T01:intron 25.0%
!!! GCATGAGACAAATTTTAATT+AGG + Chr5:13331503-13331522 MsG0580025055.01.T01:intron 25.0%
!!! GGTTTTGTTAAATTACACTA+AGG + Chr5:13332033-13332052 MsG0580025055.01.T01:intron 25.0%
!!! TCTTTTAACTCCAAAAACAA+AGG + Chr5:13331017-13331036 MsG0580025055.01.T01:CDS 25.0%
!!! TTGGAGTTTGAATTACTTTT+AGG + Chr5:13332712-13332731 MsG0580025055.01.T01:three_prime_UTR 25.0%
!!! TTTTCTGTTTCCTTTGTTTT+TGG - Chr5:13331030-13331049 None:intergenic 25.0%
AAAGCTTATCAAAGATCTGA+TGG + Chr5:13331430-13331449 MsG0580025055.01.T01:intron 30.0%
AAGCTCTTAAGGAAATGTTT+GGG + Chr5:13332609-13332628 MsG0580025055.01.T01:CDS 30.0%
AAGCTTATCAAAGATCTGAT+GGG + Chr5:13331431-13331450 MsG0580025055.01.T01:intron 30.0%
AATTTAGTACAAACCTAGCT+AGG - Chr5:13332284-13332303 None:intergenic 30.0%
ACTAAAAGATTTCCTACTTG+TGG - Chr5:13332654-13332673 None:intergenic 30.0%
ACTTGAATTCAAAACATAGG+AGG + Chr5:13332483-13332502 MsG0580025055.01.T01:CDS 30.0%
AGAGTCTATTGAAGATATGT+TGG + Chr5:13331276-13331295 MsG0580025055.01.T01:intron 30.0%
ATTATAATGCAAATGCTGAG+AGG + Chr5:13330950-13330969 MsG0580025055.01.T01:CDS 30.0%
CTAAGACCATCTTAGAATTT+GGG - Chr5:13331258-13331277 None:intergenic 30.0%
CTGTTAAGATTTCAATGTAG+GGG + Chr5:13331158-13331177 MsG0580025055.01.T01:intron 30.0%
GAAATTTAAGAGGCTTCAAA+AGG + Chr5:13331798-13331817 MsG0580025055.01.T01:CDS 30.0%
GAGTCTATTGAAGATATGTT+GGG + Chr5:13331277-13331296 MsG0580025055.01.T01:intron 30.0%
GCAATAAAAACTCTACAAGA+TGG + Chr5:13331968-13331987 MsG0580025055.01.T01:CDS 30.0%
TGAAGAATTTACCTTCTGAT+TGG + Chr5:13330827-13330846 MsG0580025055.01.T01:CDS 30.0%
TTAAAATTTGTCTCATGCTC+AGG - Chr5:13331501-13331520 None:intergenic 30.0%
! CAAGTAGGAAATCTTTTAGT+TGG + Chr5:13332654-13332673 MsG0580025055.01.T01:CDS 30.0%
! GAATGTAAAAGACATTGGTT+TGG + Chr5:13331732-13331751 MsG0580025055.01.T01:CDS 30.0%
! TAGCTTTACAACTTCTACTT+CGG - Chr5:13330801-13330820 None:intergenic 30.0%
! TCTAAGACCATCTTAGAATT+TGG - Chr5:13331259-13331278 None:intergenic 30.0%
! TGAAATGTTACCTTGTTTCA+GGG - Chr5:13332005-13332024 None:intergenic 30.0%
! TTGAAATGTTACCTTGTTTC+AGG - Chr5:13332006-13332025 None:intergenic 30.0%
!! ACTTTTTCCTTCTCTTCAAA+GGG + Chr5:13331872-13331891 MsG0580025055.01.T01:CDS 30.0%
!! GTAATGTTTCATTGGTTCAT+AGG + Chr5:13331845-13331864 MsG0580025055.01.T01:CDS 30.0%
!!! CTTAAGCAAACTTTTTCACA+AGG + Chr5:13331946-13331965 MsG0580025055.01.T01:CDS 30.0%
!!! TACTTTTTCCTTCTCTTCAA+AGG + Chr5:13331871-13331890 MsG0580025055.01.T01:CDS 30.0%
AAATGCTGAGAGGAATTCTA+TGG + Chr5:13330960-13330979 MsG0580025055.01.T01:CDS 35.0%
ACTGATCTCAATAACAAGGA+TGG - Chr5:13331597-13331616 None:intergenic 35.0%
CAAGCTCTTAAGGAAATGTT+TGG + Chr5:13332608-13332627 MsG0580025055.01.T01:CDS 35.0%
CTAACTTAACCCTAGATAAG+CGG - Chr5:13331383-13331402 None:intergenic 35.0%
CTATTAAATTCTGTCAGCCA+AGG - Chr5:13330733-13330752 None:intergenic 35.0%
GAGAGGACTTATACATGAAA+TGG + Chr5:13332453-13332472 MsG0580025055.01.T01:CDS 35.0%
GAGCAAAATATTCACGCAAA+TGG - Chr5:13330687-13330706 None:intergenic 35.0%
GCTATCAAAATATGCTAGAG+AGG + Chr5:13332436-13332455 MsG0580025055.01.T01:CDS 35.0%
GGATGCTTGTAATGTTTCAT+TGG + Chr5:13331837-13331856 MsG0580025055.01.T01:CDS 35.0%
TAAAACAGAAGCTTACCTCA+TGG - Chr5:13331080-13331099 None:intergenic 35.0%
TCATCTTCAAACCAATCAGA+AGG - Chr5:13330841-13330860 None:intergenic 35.0%
TGAAGCCTCTTAAATTTCGA+AGG - Chr5:13331796-13331815 None:intergenic 35.0%
TGAGATATCTTAGAAGAGAG+AGG + Chr5:13332384-13332403 MsG0580025055.01.T01:CDS 35.0%
TGCTACTGATCTCAATAACA+AGG - Chr5:13331601-13331620 None:intergenic 35.0%
! ACCATCTTAGAATTTGGGTT+GGG - Chr5:13331253-13331272 None:intergenic 35.0%
! ATTTCCTTAAGAGCTTGTTC+TGG - Chr5:13332605-13332624 None:intergenic 35.0%
! CTTTTTCCTTCTCTTCAAAG+GGG + Chr5:13331873-13331892 MsG0580025055.01.T01:CDS 35.0%
!! AAGTCTTTTTCATTCCCTAC+TGG - Chr5:13330886-13330905 None:intergenic 35.0%
!! TAACTGTTAAAGAGGCACTT+GGG + Chr5:13331186-13331205 MsG0580025055.01.T01:intron 35.0%
!! TTAACTGTTAAAGAGGCACT+TGG + Chr5:13331185-13331204 MsG0580025055.01.T01:intron 35.0%
!!! TTGAGTTTGTTTTGCATGAC+AGG + Chr5:13331673-13331692 MsG0580025055.01.T01:intron 35.0%
AGTGGCCTTCGAAATTTAAG+AGG + Chr5:13331788-13331807 MsG0580025055.01.T01:CDS 40.0%
ATGGAGAAAGTCATTCAGAG+TGG + Chr5:13331770-13331789 MsG0580025055.01.T01:CDS 40.0%
ATTCAGAATACACCTCCAGT+AGG + Chr5:13330868-13330887 MsG0580025055.01.T01:CDS 40.0%
ATTTAGAGGTAGAGCACAGA+AGG + Chr5:13331914-13331933 MsG0580025055.01.T01:CDS 40.0%
CTAACTCAACCCTACAAAAC+CGG - Chr5:13331223-13331242 None:intergenic 40.0%
CTAACTCAACCCTGCAAAAT+TGG - Chr5:13331546-13331565 None:intergenic 40.0%
GACCATCTTAGAATTTGGGT+TGG - Chr5:13331254-13331273 None:intergenic 40.0%
GCTGATGAAAGTAGGATCAA+TGG + Chr5:13330994-13331013 MsG0580025055.01.T01:CDS 40.0%
GGGAATGAAAAAGACTTTGC+TGG + Chr5:13330889-13330908 MsG0580025055.01.T01:CDS 40.0%
GGGTGTGTTAACTGTTAAAG+AGG + Chr5:13331178-13331197 MsG0580025055.01.T01:intron 40.0%
GGTCTTTCACAAACAGTATG+AGG + Chr5:13332675-13332694 MsG0580025055.01.T01:CDS 40.0%
TACTTCAGACTCTCCAAGTA+TGG + Chr5:13332851-13332870 MsG0580025055.01.T01:three_prime_UTR 40.0%
TGCAGTTAGCACATCATCTA+TGG + Chr5:13332507-13332526 MsG0580025055.01.T01:CDS 40.0%
TTCAGAATACACCTCCAGTA+GGG + Chr5:13330869-13330888 MsG0580025055.01.T01:CDS 40.0%
TTTCTCCATCAGCTTGCATT+GGG - Chr5:13331759-13331778 None:intergenic 40.0%
! ACCTTACAAGCCAATTTTGC+AGG + Chr5:13331533-13331552 MsG0580025055.01.T01:intron 40.0%
! CAATTTTGCAGGGTTGAGTT+AGG + Chr5:13331544-13331563 MsG0580025055.01.T01:intron 40.0%
! CCTTACAAGCCAATTTTGCA+GGG + Chr5:13331534-13331553 MsG0580025055.01.T01:intron 40.0%
! CGCTTATCTAGGGTTAAGTT+AGG + Chr5:13331381-13331400 MsG0580025055.01.T01:intron 40.0%
! GTTACCTTGTTTCAGGGTAA+GGG - Chr5:13331999-13332018 None:intergenic 40.0%
! TGAGGCAGATTTTGTGAGTT+TGG + Chr5:13332693-13332712 MsG0580025055.01.T01:exon 40.0%
! TGTTACCTTGTTTCAGGGTA+AGG - Chr5:13332000-13332019 None:intergenic 40.0%
!! CAAAATTGGCTTGTAAGGTG+GGG - Chr5:13331532-13331551 None:intergenic 40.0%
!! CCATCTTAGAATTTGGGTTG+GGG - Chr5:13331252-13331271 None:intergenic 40.0%
!! GCAAAATTGGCTTGTAAGGT+GGG - Chr5:13331533-13331552 None:intergenic 40.0%
!! TCTTTTTCATTCCCTACTGG+AGG - Chr5:13330883-13330902 None:intergenic 40.0%
!! TGCAAAATTGGCTTGTAAGG+TGG - Chr5:13331534-13331553 None:intergenic 40.0%
!! TTGTTTTGCATGACAGGTTC+CGG + Chr5:13331679-13331698 MsG0580025055.01.T01:intron 40.0%
AATGGCATCCAATCCTATCC+CGG - Chr5:13331701-13331720 None:intergenic 45.0%
ACCTTCTTCAGAAATCCCTC+AGG - Chr5:13330919-13330938 None:intergenic 45.0%
AGAACCCTTACCCTGAAACA+AGG + Chr5:13331992-13332011 MsG0580025055.01.T01:CDS 45.0%
AGAGCCAGAACAAGCTCTTA+AGG + Chr5:13332598-13332617 MsG0580025055.01.T01:CDS 45.0%
ATAAGCGGCTTGTAGGGTAA+GGG - Chr5:13331368-13331387 None:intergenic 45.0%
CATGCTCAGGATTAGACTTC+TGG - Chr5:13331488-13331507 None:intergenic 45.0%
CTTTCTCCATCAGCTTGCAT+TGG - Chr5:13331760-13331779 None:intergenic 45.0%
GATTTCCTACTTGTGGACCT+TGG - Chr5:13332647-13332666 None:intergenic 45.0%
GTTCTGCTGCTGATGAAAGT+AGG + Chr5:13330986-13331005 MsG0580025055.01.T01:CDS 45.0%
TATGCCCAAGACTAGACATC+TGG - Chr5:13331323-13331342 None:intergenic 45.0%
! ACCTGAGGGATTTCTGAAGA+AGG + Chr5:13330915-13330934 MsG0580025055.01.T01:CDS 45.0%
! ATGGATCCCCTTTGAAGAGA+AGG - Chr5:13331882-13331901 None:intergenic 45.0%
! CCCCAACCCAAATTCTAAGA+TGG + Chr5:13331249-13331268 MsG0580025055.01.T01:intron 45.0%
! GAATTTACTGGCTGACCATG+AGG + Chr5:13331062-13331081 MsG0580025055.01.T01:CDS 45.0%
! TGTTTTGCATGACAGGTTCC+GGG + Chr5:13331680-13331699 MsG0580025055.01.T01:intron 45.0%
! TTGGGCTCAATTTTGCTCCA+AGG + Chr5:13332627-13332646 MsG0580025055.01.T01:CDS 45.0%
!! ACACAAAGAAGCACCTAGCT+AGG + Chr5:13332268-13332287 MsG0580025055.01.T01:intron 45.0%
!! ACCTTACAAGCCGGTTTTGT+AGG + Chr5:13331210-13331229 MsG0580025055.01.T01:intron 45.0%
!! AGCCAAGGAGTACTACTTTC+GGG - Chr5:13330718-13330737 None:intergenic 45.0%
!! CAGCCAAGGAGTACTACTTT+CGG - Chr5:13330719-13330738 None:intergenic 45.0%
!! CCCTGCAAAATTGGCTTGTA+AGG - Chr5:13331537-13331556 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+GGG + Chr5:13331211-13331230 MsG0580025055.01.T01:intron 45.0%
ACCCTACAAGCCGCTTATCT+AGG + Chr5:13331370-13331389 MsG0580025055.01.T01:intron 50.0%
ACCCTAGATAAGCGGCTTGT+AGG - Chr5:13331375-13331394 None:intergenic 50.0%
AGACTTTGCTGGAAGACCTG+AGG + Chr5:13330900-13330919 MsG0580025055.01.T01:CDS 50.0%
ATGTTGGGCCACCTGCTATT+GGG + Chr5:13331292-13331311 MsG0580025055.01.T01:intron 50.0%
CACTTGGGAACCTTACAAGC+CGG + Chr5:13331201-13331220 MsG0580025055.01.T01:intron 50.0%
CCAAGACTAGACATCTGGAG+GGG - Chr5:13331318-13331337 None:intergenic 50.0%
CCCAAGACTAGACATCTGGA+GGG - Chr5:13331319-13331338 None:intergenic 50.0%
CCCTACAAGCCGCTTATCTA+GGG + Chr5:13331371-13331390 MsG0580025055.01.T01:intron 50.0%
CCCTAGATAAGCGGCTTGTA+GGG - Chr5:13331374-13331393 None:intergenic 50.0%
CTCCCGAAAGTAGTACTCCT+TGG + Chr5:13330713-13330732 MsG0580025055.01.T01:CDS 50.0%
CTCTACTGGACCAACCAGTT+TGG - Chr5:13332582-13332601 None:intergenic 50.0%
GACTTTGCTGGAAGACCTGA+GGG + Chr5:13330901-13330920 MsG0580025055.01.T01:CDS 50.0%
GATAAGCGGCTTGTAGGGTA+AGG - Chr5:13331369-13331388 None:intergenic 50.0%
GCAGTTGTTGCCAAACTGGT+TGG + Chr5:13332569-13332588 MsG0580025055.01.T01:CDS 50.0%
TATGTTGGGCCACCTGCTAT+TGG + Chr5:13331291-13331310 MsG0580025055.01.T01:intron 50.0%
TGCAGCAGTTGTTGCCAAAC+TGG + Chr5:13332565-13332584 MsG0580025055.01.T01:CDS 50.0%
TTGCTCCAAGGTCCACAAGT+AGG + Chr5:13332639-13332658 MsG0580025055.01.T01:CDS 50.0%
TTGGACCCAATGCAAGCTGA+TGG + Chr5:13331751-13331770 MsG0580025055.01.T01:CDS 50.0%
! CCCTCCAGATGTCTAGTCTT+GGG + Chr5:13331316-13331335 MsG0580025055.01.T01:intron 50.0%
! GGAGTACTACTTTCGGGAGT+CGG - Chr5:13330712-13330731 None:intergenic 50.0%
! TCTGATGGGCCACTCGATAT+TGG + Chr5:13331445-13331464 MsG0580025055.01.T01:intron 50.0%
!! AATTGGCTTGTAAGGTGGGG+AGG - Chr5:13331529-13331548 None:intergenic 50.0%
!! AGAGCTTGTTCTGGCTCTAC+TGG - Chr5:13332596-13332615 None:intergenic 50.0%
!! CCCTACAAAACCGGCTTGTA+AGG - Chr5:13331214-13331233 None:intergenic 50.0%
!! GTTCTAGTTCTAGACCGTCG+AGG + Chr5:13330764-13330783 MsG0580025055.01.T01:CDS 50.0%
CACTCGATATTGGACCGGTC+AGG + Chr5:13331455-13331474 MsG0580025055.01.T01:intron 55.0%
CCCCTCCAGATGTCTAGTCT+TGG + Chr5:13331315-13331334 MsG0580025055.01.T01:intron 55.0%
CTGACCGGTCCAATATCGAG+TGG - Chr5:13331457-13331476 None:intergenic 55.0%
GACAGGTTCCGGGATAGGAT+TGG + Chr5:13331690-13331709 MsG0580025055.01.T01:intron 55.0%
GCCCAAGACTAGACATCTGG+AGG - Chr5:13331320-13331339 None:intergenic 55.0%
TGCATGACAGGTTCCGGGAT+AGG + Chr5:13331685-13331704 MsG0580025055.01.T01:intron 55.0%
TGGGCCACTCGATATTGGAC+CGG + Chr5:13331450-13331469 MsG0580025055.01.T01:intron 55.0%
ATCTGGAGGGGCCCAATAGC+AGG - Chr5:13331306-13331325 None:intergenic 60.0%
CGGCTCAAGCTCAACCTCGA+CGG - Chr5:13330781-13330800 None:intergenic 60.0%
!! CTTCTGGAGCGTGTCCTGAC+CGG - Chr5:13331472-13331491 None:intergenic 60.0%
TGGAGGGGCCCAATAGCAGG+TGG - Chr5:13331303-13331322 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 13330679 13332911 13330679 ID=MsG0580025055.01;Name=MsG0580025055.01
Chr5 mRNA 13330679 13332911 13330679 ID=MsG0580025055.01.T01;Parent=MsG0580025055.01;Name=MsG0580025055.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.85|0.93|1|0.57|0.6|15|202|354
Chr5 exon 13330679 13331083 13330679 ID=MsG0580025055.01.T01:exon:20299;Parent=MsG0580025055.01.T01
Chr5 exon 13331178 13331190 13331178 ID=MsG0580025055.01.T01:exon:20300;Parent=MsG0580025055.01.T01
Chr5 exon 13331695 13332013 13331695 ID=MsG0580025055.01.T01:exon:20301;Parent=MsG0580025055.01.T01
Chr5 exon 13332382 13332911 13332382 ID=MsG0580025055.01.T01:exon:20302;Parent=MsG0580025055.01.T01
Chr5 CDS 13330679 13331083 13330679 ID=MsG0580025055.01.T01:cds;Parent=MsG0580025055.01.T01
Chr5 CDS 13331178 13331190 13331178 ID=MsG0580025055.01.T01:cds;Parent=MsG0580025055.01.T01
Chr5 CDS 13331695 13332013 13331695 ID=MsG0580025055.01.T01:cds;Parent=MsG0580025055.01.T01
Chr5 CDS 13332382 13332709 13332382 ID=MsG0580025055.01.T01:cds;Parent=MsG0580025055.01.T01
Chr5 three_prime_UTR 13332710 13332911 13332710 ID=MsG0580025055.01.T01:three_prime_utr;Parent=MsG0580025055.01.T01
Gene Sequence

>MsG0580025055.01.T01

ATGAACCATTTGCGTGAATATTTTGCTCTTCCGACTCCCGAAAGTAGTACTCCTTGGCTGACAGAATTTAATAGAATTAGTTCTAGTTCTAGTTCTAGACCGTCGAGGTTGAGCTTGAGCCGAAGTAGAAGTTGTAAAGCTAGTCTCATGAAGAATTTACCTTCTGATTGGTTTGAAGATGATGAAGAAATTCAGAATACACCTCCAGTAGGGAATGAAAAAGACTTTGCTGGAAGACCTGAGGGATTTCTGAAGAAGGTTCATACACTAAATTATAATGCAAATGCTGAGAGGAATTCTATGGAAAGTTCTGCTGCTGATGAAAGTAGGATCAATGGTCTTTTAACTCCAAAAACAAAGGAAACAGAAAATCTTAAGAGATTGAATTTACTGGCTGACCATGAGGGGTGTGTTAACTGTTCCGGGATAGGATTGGATGCCATTATGTCTACAAAGAATGTAAAAGACATTGGTTTGGACCCAATGCAAGCTGATGGAGAAAGTCATTCAGAGTGGCCTTCGAAATTTAAGAGGCTTCAAAAGGAGATTATTGAACTATGGGATGCTTGTAATGTTTCATTGGTTCATAGGACTTACTTTTTCCTTCTCTTCAAAGGGGATCCATTAGATTCTATTTATTTAGAGGTAGAGCACAGAAGGCTATCATATCTTAAGCAAACTTTTTCACAAGGCAATAAAAACTCTACAAGATGGAAGAACCCTTACCCTGAAACAAGCATGAGATATCTTAGAAGAGAGAGGCAGATGTTGTGCAAGCAAATGCAGAAAAAGCTATCAAAATATGCTAGAGAGGACTTATACATGAAATGGAGCATTCACTTGAATTCAAAACATAGGAGGTTGCAGTTAGCACATCATCTATGGACTGACACAAACAACATTGATCACATTAGAGAGAGTGCAGCAGTTGTTGCCAAACTGGTTGGTCCAGTAGAGCCAGAACAAGCTCTTAAGGAAATGTTTGGGCTCAATTTTGCTCCAAGGTCCACAAGTAGGAAATCTTTTAGTTGGTCTTTCACAAACAGTATGAGGCAGATTTTGTGA

Protein sequence

>MsG0580025055.01.T01

MNHLREYFALPTPESSTPWLTEFNRISSSSSSRPSRLSLSRSRSCKASLMKNLPSDWFEDDEEIQNTPPVGNEKDFAGRPEGFLKKVHTLNYNANAERNSMESSAADESRINGLLTPKTKETENLKRLNLLADHEGCVNCSGIGLDAIMSTKNVKDIGLDPMQADGESHSEWPSKFKRLQKEIIELWDACNVSLVHRTYFFLLFKGDPLDSIYLEVEHRRLSYLKQTFSQGNKNSTRWKNPYPETSMRYLRRERQMLCKQMQKKLSKYAREDLYMKWSIHLNSKHRRLQLAHHLWTDTNNIDHIRESAAVVAKLVGPVEPEQALKEMFGLNFAPRSTSRKSFSWSFTNSMRQIL*