AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045988.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045988.01.T01 MTR_4g097030 93.532 201 12 1 3 202 4 204 2.33e-121 345
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045988.01.T01 AT3G49890 45.320 203 101 4 1 202 1 194 1.15e-46 155
MsG0880045988.01.T01 AT3G49890 39.827 231 101 5 1 202 1 222 4.64e-41 141

Find 98 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCATTGTTCACTCTTTC+AGG 0.039504 8:+67318839 None:intergenic
CAAAATTATGTATGCTTAAA+AGG 0.164536 8:+67316073 None:intergenic
TGCTTAATCTTTGGGGATTT+AGG 0.177270 8:+67318643 None:intergenic
TCCCCACTGTATGTAGTATT+TGG 0.203531 8:-67315942 MsG0880045988.01.T01:three_prime_UTR
ATTATCATTATGCTTCTTCT+TGG 0.221055 8:+67318672 None:intergenic
GCTTAATCTTTGGGGATTTA+GGG 0.228273 8:+67318644 None:intergenic
AGTTGGTAGTGCTTAATCTT+TGG 0.259629 8:+67318634 None:intergenic
ACACCTCCCCTTGCAGGTTT+TGG 0.271984 8:-67315971 MsG0880045988.01.T01:three_prime_UTR
GTTGGTAGTGCTTAATCTTT+GGG 0.273130 8:+67318635 None:intergenic
CTTCTTGGTGTCATTGTTGT+TGG 0.276148 8:+67318687 None:intergenic
TGTGAGCCATTTCTTGTAAA+AGG 0.287168 8:+67316025 None:intergenic
ATACGGAAATTACATAGTTT+TGG 0.291503 8:+67315743 None:intergenic
TTCAACTTCTTTCTGTATGC+AGG 0.313470 8:+67315999 None:intergenic
TCTTCTCCCGGAACAAGTTT+AGG 0.314989 8:+67316819 None:intergenic
TTGGCAGGCACAAAAGCTTT+TGG 0.334252 8:-67318296 MsG0880045988.01.T01:intron
TATGTCACTTCCTTCTTGAA+TGG 0.336482 8:-67318721 MsG0880045988.01.T01:CDS
GCAGCCATTGATTCCGTTGC+CGG 0.343503 8:-67318754 MsG0880045988.01.T01:CDS
ATTCAATCTATTGCTGTAGA+TGG 0.344191 8:-67316668 MsG0880045988.01.T01:CDS
ACTACATACAGTGGGGATAA+AGG 0.353019 8:+67315948 None:intergenic
CTGCTACAGTAGCCATTGTT+TGG 0.353921 8:+67318811 None:intergenic
AGGTCGTTTCCTTGGCGGTT+GGG 0.354183 8:+67316839 None:intergenic
AATTCTTTCCTCCTCTGTCT+TGG 0.368441 8:+67316559 None:intergenic
GAAACGACCTAAACTTGTTC+CGG 0.373276 8:-67316826 MsG0880045988.01.T01:CDS
CAAATCAGAAAGATATATTT+CGG 0.389414 8:+67315792 None:intergenic
CTGGTTTAGAATGTCTAAAC+AGG 0.391452 8:+67318185 None:intergenic
GATCTTAACCTGCATTTCCT+TGG 0.392728 8:+67316491 None:intergenic
AGACAAACACCTCCCCTTGC+AGG 0.413660 8:-67315977 MsG0880045988.01.T01:three_prime_UTR
ATGCCGCAATCATCGACATT+AGG 0.437333 8:+67318211 None:intergenic
AGTGACATAGGAGGAGGTTC+CGG 0.442671 8:+67318735 None:intergenic
AAAAGGAAGGAGAGTGTGGC+AGG 0.445448 8:+67316090 None:intergenic
GGTCGTTTCCTTGGCGGTTG+GGG 0.447469 8:+67316840 None:intergenic
AACCTGCATTTCCTTGGCCA+TGG 0.449954 8:+67316497 None:intergenic
CGACATTAGGATCCTCATCT+AGG 0.450341 8:+67318224 None:intergenic
TAGGTCGTTTCCTTGGCGGT+TGG 0.450947 8:+67316838 None:intergenic
AAACGACCTAAACTTGTTCC+GGG 0.451262 8:-67316825 MsG0880045988.01.T01:CDS
ACAAGTTTAGGTCGTTTCCT+TGG 0.460078 8:+67316831 None:intergenic
TCAAACACTAATAGTGTCTT+CGG 0.460581 8:-67316470 MsG0880045988.01.T01:CDS
TCAACTTCTTTCTGTATGCA+GGG 0.462764 8:+67316000 None:intergenic
GATTAAGCACTACCAACTTA+AGG 0.464419 8:-67318629 MsG0880045988.01.T01:intron
CTTGGTGTCATTGTTGTTGG+TGG 0.472021 8:+67318690 None:intergenic
AATGAAGGAAGGTGATATGT+TGG 0.485479 8:+67315894 None:intergenic
AAACATTCTTAGACAACATA+CGG 0.487345 8:+67315726 None:intergenic
AATAGTGTCTTCGGAGATGC+AGG 0.494241 8:-67316461 MsG0880045988.01.T01:CDS
TGATGCATACAAGAAATCAT+TGG 0.494355 8:-67316621 MsG0880045988.01.T01:CDS
TTCTCATCAATATCTTCTCC+CGG 0.497015 8:+67316807 None:intergenic
TTTAGAATTGGACCTTAAGT+TGG 0.504850 8:+67318617 None:intergenic
TAAACAACATTAAAGTAAAG+AGG 0.505007 8:+67316401 None:intergenic
TGCATTTCCTTGGCCATGGA+TGG 0.510483 8:+67316501 None:intergenic
GGTTCCGGCAACGGAATCAA+TGG 0.515860 8:+67318750 None:intergenic
AGTTTAGGTCGTTTCCTTGG+CGG 0.526801 8:+67316834 None:intergenic
ATCCATGGCCAAGGAAATGC+AGG 0.528018 8:-67316499 MsG0880045988.01.T01:CDS
AGAAAGGTGGTTACCATCCA+TGG 0.528142 8:-67316514 MsG0880045988.01.T01:CDS
AGGAAGGAGAGTGTTGGAAC+GGG 0.531279 8:+67316045 None:intergenic
AAGGAAGGAGAGTGTTGGAA+CGG 0.534033 8:+67316044 None:intergenic
GAAACAACGTTGTAGAATGC+AGG 0.539960 8:+67316116 None:intergenic
ATTATGTATGCTTAAAAGGA+AGG 0.542296 8:+67316077 None:intergenic
AGCCATTTCTTGTAAAAGGA+AGG 0.542503 8:+67316029 None:intergenic
AGTATTTGGCTTCCTGTCGT+TGG 0.546117 8:-67315928 MsG0880045988.01.T01:three_prime_UTR
CTGTTTAGACATTCTAAACC+AGG 0.547528 8:-67318184 MsG0880045988.01.T01:CDS
GGTGTCATTGTTGTTGGTGG+CGG 0.554093 8:+67318693 None:intergenic
AAGGAAGGAGAGTGTGGCAG+GGG 0.556268 8:+67316092 None:intergenic
GATAAAGGCCAAAACCTGCA+AGG 0.558661 8:+67315963 None:intergenic
TGTAAAAGGAAGGAGAGTGT+TGG 0.558769 8:+67316039 None:intergenic
CAACTTCTTTCTGTATGCAG+GGG 0.560774 8:+67316001 None:intergenic
ATGAAGACGGTGACGCAGCA+TGG 0.564455 8:-67318780 MsG0880045988.01.T01:CDS
ATAGGAGGAGGTTCCGGCAA+CGG 0.566478 8:+67318741 None:intergenic
TTAGGATCCTCATCTAGGAC+AGG 0.568212 8:+67318229 None:intergenic
ATTCAAGAAGGAAGTGACAT+AGG 0.569799 8:+67318723 None:intergenic
TCAAACATCAATACTGACAT+TGG 0.572830 8:-67316438 MsG0880045988.01.T01:CDS
TATTGATGAGAAATCAAAGA+AGG 0.576415 8:-67316796 MsG0880045988.01.T01:intron
GAAGGAAGGTGATATGTTGG+AGG 0.576866 8:+67315897 None:intergenic
GAAGGAAGTGACATAGGAGG+AGG 0.580901 8:+67318729 None:intergenic
GTTGATCATAAAATGAGCAT+CGG 0.585046 8:-67316222 MsG0880045988.01.T01:three_prime_UTR
AGCCAAATACTACATACAGT+GGG 0.589181 8:+67315940 None:intergenic
ATCTATTCCTGTCCTAGATG+AGG 0.593312 8:-67318236 MsG0880045988.01.T01:CDS
TACCTCAACAGTTTAGAAGA+CGG 0.593760 8:-67316691 MsG0880045988.01.T01:intron
GATCCTAATGTCGATGATTG+CGG 0.595195 8:-67318214 MsG0880045988.01.T01:CDS
CAAAGAGTTACAATGAAGGA+AGG 0.595221 8:+67315883 None:intergenic
GCTTAAAAGGAAGGAGAGTG+TGG 0.599322 8:+67316086 None:intergenic
AAAACAAAGAGTTACAATGA+AGG 0.602050 8:+67315879 None:intergenic
GAGGATTCAATACCAACGAC+AGG 0.602070 8:+67315916 None:intergenic
AATGGCTACTGTAGCAGCAG+TGG 0.604176 8:-67318805 MsG0880045988.01.T01:CDS
CAGATGAACCCCAACCGCCA+AGG 0.604989 8:-67316848 MsG0880045988.01.T01:CDS
AGCAGCAGTGGCGATGAAGA+CGG 0.605287 8:-67318793 MsG0880045988.01.T01:CDS
GGCGGAAAATCCATTCAAGA+AGG 0.609902 8:+67318711 None:intergenic
ATAAAGGCCAAAACCTGCAA+GGG 0.611753 8:+67315964 None:intergenic
AAAAGCTAAAGCCAAGACAG+AGG 0.615616 8:-67316570 MsG0880045988.01.T01:CDS
TTGGTAGTGCTTAATCTTTG+GGG 0.616398 8:+67318636 None:intergenic
AGCTAAAGCCAAGACAGAGG+AGG 0.620686 8:-67316567 MsG0880045988.01.T01:CDS
CAAGAAGGAAGTGACATAGG+AGG 0.628507 8:+67318726 None:intergenic
AAAGGAAGGAGAGTGTGGCA+GGG 0.637718 8:+67316091 None:intergenic
AGGCCAAAACCTGCAAGGGG+AGG 0.642465 8:+67315968 None:intergenic
GTGGTTACCATCCATGGCCA+AGG 0.644984 8:-67316508 MsG0880045988.01.T01:CDS
AAGCCAAATACTACATACAG+TGG 0.653436 8:+67315939 None:intergenic
TAAAGGCCAAAACCTGCAAG+GGG 0.668376 8:+67315965 None:intergenic
ATGGCAGAAGAACCAAACAA+TGG 0.702147 8:-67318823 MsG0880045988.01.T01:CDS
AAACCTGAAAGAGTGAACAA+TGG 0.716102 8:-67318842 MsG0880045988.01.T01:exon
GCCAAATACTACATACAGTG+GGG 0.717263 8:+67315941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGCAAAAATAAAATAAAATT+AGG - Chr8:67316018-67316037 MsG0880045988.01.T01:three_prime_UTR 10.0%
!!! ATAAAATAAAATTAGGATTT+TGG - Chr8:67316025-67316044 MsG0880045988.01.T01:three_prime_UTR 10.0%
!! AAGTTAAATAAATAGTGTAA+GGG - Chr8:67317593-67317612 MsG0880045988.01.T01:intron 15.0%
!! ATTGAGAAATTGAAAAAATT+AGG - Chr8:67318013-67318032 MsG0880045988.01.T01:intron 15.0%
!! TAAGTTAAATAAATAGTGTA+AGG - Chr8:67317592-67317611 MsG0880045988.01.T01:intron 15.0%
!! TTGAGAAATTGAAAAAATTA+GGG - Chr8:67318014-67318033 MsG0880045988.01.T01:intron 15.0%
!!! AAAAATGAGAAATTTAGAAT+TGG + Chr8:67315950-67315969 None:intergenic 15.0%
!!! CAACTTTTAAAAAGAAAAAT+AGG + Chr8:67316515-67316534 None:intergenic 15.0%
!!! TTTTAGATTTTTGATAGTTT+TGG - Chr8:67316467-67316486 MsG0880045988.01.T01:CDS 15.0%
!! AGTTAAATAAATAGTGTAAG+GGG - Chr8:67317594-67317613 MsG0880045988.01.T01:intron 20.0%
!! ATATAAATGTCAAAGAACAA+TGG + Chr8:67316582-67316601 None:intergenic 20.0%
!! CAAAATTATGTATGCTTAAA+AGG + Chr8:67318482-67318501 None:intergenic 20.0%
!! CAAATCAGAAAGATATATTT+CGG + Chr8:67318763-67318782 None:intergenic 20.0%
!! TAAACAACATTAAAGTAAAG+AGG + Chr8:67318154-67318173 None:intergenic 20.0%
!! TGAGAAATTGAAAAAATTAG+GGG - Chr8:67318015-67318034 MsG0880045988.01.T01:intron 20.0%
!! TTTATGTTGTGTATGTTTAT+TGG - Chr8:67316237-67316256 MsG0880045988.01.T01:three_prime_UTR 20.0%
!!! AAAAACTGAATTTTGTTTTG+TGG + Chr8:67316073-67316092 None:intergenic 20.0%
!!! AAAAATTGTTGATTTGTTAG+TGG - Chr8:67318190-67318209 MsG0880045988.01.T01:CDS 20.0%
!!! AAAACTGAATTTTGTTTTGT+GGG + Chr8:67316072-67316091 None:intergenic 20.0%
!!! AATGATTTTAAAGTTTTCAG+TGG - Chr8:67318402-67318421 MsG0880045988.01.T01:intron 20.0%
!!! ACAACTTTTATTTTTTTGAC+AGG - Chr8:67317367-67317386 MsG0880045988.01.T01:intron 20.0%
!!! ATTAGAGACTAAATTCATTT+TGG - Chr8:67317257-67317276 MsG0880045988.01.T01:intron 20.0%
!!! TTTATAACTACATTGTTTTG+AGG + Chr8:67318225-67318244 None:intergenic 20.0%
!!! TTTTAGATATTAATGGTTTG+AGG - Chr8:67317422-67317441 MsG0880045988.01.T01:intron 20.0%
! AAAACAAAGAGTTACAATGA+AGG + Chr8:67318676-67318695 None:intergenic 25.0%
! AAACAAGAAAAAAGCTGAAT+TGG - Chr8:67316615-67316634 MsG0880045988.01.T01:CDS 25.0%
! AAACATTCTTAGACAACATA+CGG + Chr8:67318829-67318848 None:intergenic 25.0%
! AACAAGAAAAAAGCTGAATT+GGG - Chr8:67316616-67316635 MsG0880045988.01.T01:CDS 25.0%
! ATTATCATTATGCTTCTTCT+TGG + Chr8:67315883-67315902 None:intergenic 25.0%
! ATTATGTATGCTTAAAAGGA+AGG + Chr8:67318478-67318497 None:intergenic 25.0%
! GTAACAAAAAAACATGAACT+TGG + Chr8:67316100-67316119 None:intergenic 25.0%
! GTGAAAAATAAAAATCAGTC+TGG + Chr8:67317513-67317532 None:intergenic 25.0%
! TACAAGTAAACTAGTTGTTA+CGG + Chr8:67317393-67317412 None:intergenic 25.0%
! TATTGATGAGAAATCAAAGA+AGG - Chr8:67317756-67317775 MsG0880045988.01.T01:intron 25.0%
!! ATACGGAAATTACATAGTTT+TGG + Chr8:67318812-67318831 None:intergenic 25.0%
!! ATTTGCAATTTTGCAAAAGA+AGG + Chr8:67316153-67316172 None:intergenic 25.0%
!! ATTTTTCTTCTCATGGTTTT+TGG - Chr8:67316205-67316224 MsG0880045988.01.T01:three_prime_UTR 25.0%
!! TTTGTAGAGAATTTGACTTA+TGG + Chr8:67317293-67317312 None:intergenic 25.0%
!!! AGACTAAATTCATTTTGGTT+TGG - Chr8:67317262-67317281 MsG0880045988.01.T01:intron 25.0%
!!! AGTTCATGTTTTTTTGTTAC+TGG - Chr8:67316100-67316119 MsG0880045988.01.T01:three_prime_UTR 25.0%
!!! TCTTGTATTTTTATCAGTGA+CGG - Chr8:67318272-67318291 MsG0880045988.01.T01:CDS 25.0%
!!! TTGTTTTTTTGTAGTGTTTC+TGG - Chr8:67316532-67316551 MsG0880045988.01.T01:CDS 25.0%
AACATGTTGCGTCAAATTTA+AGG + Chr8:67317463-67317482 None:intergenic 30.0%
ACACAAACTGGTTACATTAT+GGG - Chr8:67317537-67317556 MsG0880045988.01.T01:intron 30.0%
AGAATGAATAAAGAGATGCA+TGG + Chr8:67316778-67316797 None:intergenic 30.0%
ATGCATCTCTTTATTCATTC+TGG - Chr8:67316777-67316796 MsG0880045988.01.T01:intron 30.0%
ATGCATGTTATATTGCAATG+TGG - Chr8:67316860-67316879 MsG0880045988.01.T01:intron 30.0%
ATTCAATCTATTGCTGTAGA+TGG - Chr8:67317884-67317903 MsG0880045988.01.T01:intron 30.0%
CAACATATGCAAATGTGATT+CGG + Chr8:67317660-67317679 None:intergenic 30.0%
GGAATTTGAATTACGTTTGT+GGG - Chr8:67316121-67316140 MsG0880045988.01.T01:three_prime_UTR 30.0%
GTTGATCATAAAATGAGCAT+CGG - Chr8:67318330-67318349 MsG0880045988.01.T01:intron 30.0%
TCAAACACTAATAGTGTCTT+CGG - Chr8:67318082-67318101 MsG0880045988.01.T01:intron 30.0%
TCAAACATCAATACTGACAT+TGG - Chr8:67318114-67318133 MsG0880045988.01.T01:intron 30.0%
TGATGCATACAAGAAATCAT+TGG - Chr8:67317931-67317950 MsG0880045988.01.T01:intron 30.0%
TGGAATTTGAATTACGTTTG+TGG - Chr8:67316120-67316139 MsG0880045988.01.T01:three_prime_UTR 30.0%
TTGAAAAAATTAGGGGAGAA+AGG - Chr8:67318022-67318041 MsG0880045988.01.T01:intron 30.0%
! ACTGTACATTTTTCTTCTCA+TGG - Chr8:67316198-67316217 MsG0880045988.01.T01:three_prime_UTR 30.0%
! TTTAGAATTGGACCTTAAGT+TGG + Chr8:67315938-67315957 None:intergenic 30.0%
! TTTTGATCATGCAGGTAAAT+TGG - Chr8:67316397-67316416 MsG0880045988.01.T01:CDS 30.0%
! TTTTTCACATTGACACAAAC+TGG - Chr8:67317525-67317544 MsG0880045988.01.T01:intron 30.0%
!! AGTGTTTGTGACATTGATTT+GGG - Chr8:67317050-67317069 MsG0880045988.01.T01:intron 30.0%
!! TTTGTAGTGTTTCTGGTAAT+AGG - Chr8:67316539-67316558 MsG0880045988.01.T01:CDS 30.0%
!!! GATTTTAAAGTTTTCAGTGG+AGG - Chr8:67318405-67318424 MsG0880045988.01.T01:intron 30.0%
!!! TTCAGTGTTTCGTTTTTTCT+TGG - Chr8:67318694-67318713 MsG0880045988.01.T01:CDS 30.0%
AAAAAATTAGGGGAGAAAGG+TGG - Chr8:67318025-67318044 MsG0880045988.01.T01:intron 35.0%
AAACCTGAAAGAGTGAACAA+TGG - Chr8:67315710-67315729 MsG0880045988.01.T01:three_prime_UTR 35.0%
AAGCCAAATACTACATACAG+TGG + Chr8:67318616-67318635 None:intergenic 35.0%
AATAGCTTGGACCATTATTC+AGG + Chr8:67317016-67317035 None:intergenic 35.0%
AATGAAGGAAGGTGATATGT+TGG + Chr8:67318661-67318680 None:intergenic 35.0%
ACAACATGCACATACATCTA+TGG + Chr8:67317795-67317814 None:intergenic 35.0%
AGCCAAATACTACATACAGT+GGG + Chr8:67318615-67318634 None:intergenic 35.0%
AGCCATTTCTTGTAAAAGGA+AGG + Chr8:67318526-67318545 None:intergenic 35.0%
ATTCAAGAAGGAAGTGACAT+AGG + Chr8:67315832-67315851 None:intergenic 35.0%
CAAAGAGTTACAATGAAGGA+AGG + Chr8:67318672-67318691 None:intergenic 35.0%
CAAATCAATGTCACAAACAC+TGG + Chr8:67317051-67317070 None:intergenic 35.0%
CTGTTTAGACATTCTAAACC+AGG - Chr8:67316368-67316387 MsG0880045988.01.T01:exon 35.0%
GACACAAACTGGTTACATTA+TGG - Chr8:67317536-67317555 MsG0880045988.01.T01:intron 35.0%
GATTAAGCACTACCAACTTA+AGG - Chr8:67315923-67315942 MsG0880045988.01.T01:three_prime_UTR 35.0%
GCATGATCAAAAACTATTCC+TGG + Chr8:67316389-67316408 None:intergenic 35.0%
TAATGGTCCAAGCTATTACT+TGG - Chr8:67317019-67317038 MsG0880045988.01.T01:intron 35.0%
TACCTCAACAGTTTAGAAGA+CGG - Chr8:67317861-67317880 MsG0880045988.01.T01:intron 35.0%
TCAACTTCTTTCTGTATGCA+GGG + Chr8:67318555-67318574 None:intergenic 35.0%
TCTACAAAATCCCATTTCAG+TGG - Chr8:67317305-67317324 MsG0880045988.01.T01:intron 35.0%
TGCCAACTAAACCTGAATAA+TGG - Chr8:67317002-67317021 MsG0880045988.01.T01:intron 35.0%
TGGTTACATTATGGGTTTGA+TGG - Chr8:67317545-67317564 MsG0880045988.01.T01:intron 35.0%
TGTGAGCCATTTCTTGTAAA+AGG + Chr8:67318530-67318549 None:intergenic 35.0%
TGTTGTGTATGTTTATTGGC+AGG - Chr8:67316241-67316260 MsG0880045988.01.T01:three_prime_UTR 35.0%
TGTTTACGCTTACATCTATG+TGG - Chr8:67317678-67317697 MsG0880045988.01.T01:intron 35.0%
TTCAACTTCTTTCTGTATGC+AGG + Chr8:67318556-67318575 None:intergenic 35.0%
TTCTCATCAATATCTTCTCC+CGG + Chr8:67317748-67317767 None:intergenic 35.0%
! AAAGCTTTTGGATGACATAG+TGG - Chr8:67316268-67316287 MsG0880045988.01.T01:three_prime_UTR 35.0%
! ACTACAGAAAAGCATGCTTT+GGG - Chr8:67316951-67316970 MsG0880045988.01.T01:intron 35.0%
! CAGTGTTTGTGACATTGATT+TGG - Chr8:67317049-67317068 MsG0880045988.01.T01:intron 35.0%
! CTCCTTCCTTTTACAAGAAA+TGG - Chr8:67318521-67318540 MsG0880045988.01.T01:intron 35.0%
! CTGGTTTAGAATGTCTAAAC+AGG + Chr8:67316370-67316389 None:intergenic 35.0%
! GACCATTATTCAGGTTTAGT+TGG + Chr8:67317007-67317026 None:intergenic 35.0%
! GCTTAATCTTTGGGGATTTA+GGG + Chr8:67315911-67315930 None:intergenic 35.0%
! GGAATAGTTTTTGATCATGC+AGG - Chr8:67316389-67316408 MsG0880045988.01.T01:CDS 35.0%
! TATGTCACTTCCTTCTTGAA+TGG - Chr8:67315831-67315850 MsG0880045988.01.T01:three_prime_UTR 35.0%
! TGCTTAATCTTTGGGGATTT+AGG + Chr8:67315912-67315931 None:intergenic 35.0%
!! AGTTGGTAGTGCTTAATCTT+TGG + Chr8:67315921-67315940 None:intergenic 35.0%
!! GTTGGTAGTGCTTAATCTTT+GGG + Chr8:67315920-67315939 None:intergenic 35.0%
!! TTGGTAGTGCTTAATCTTTG+GGG + Chr8:67315919-67315938 None:intergenic 35.0%
!!! ATCGCTGTTTTGTTATTGCA+AGG - Chr8:67318303-67318322 MsG0880045988.01.T01:intron 35.0%
!!! GAATTTTGTTTTGTGGGCAA+TGG + Chr8:67316066-67316085 None:intergenic 35.0%
!!! TTGATAGTTTTGGACTTTGC+TGG - Chr8:67316477-67316496 MsG0880045988.01.T01:CDS 35.0%
AAAAGCTAAAGCCAAGACAG+AGG - Chr8:67317982-67318001 MsG0880045988.01.T01:intron 40.0%
AATTCTTTCCTCCTCTGTCT+TGG + Chr8:67317996-67318015 None:intergenic 40.0%
ACAAGTTTAGGTCGTTTCCT+TGG + Chr8:67317724-67317743 None:intergenic 40.0%
ACAATGATAACCTCTCAGAG+TGG + Chr8:67316922-67316941 None:intergenic 40.0%
ACTACATACAGTGGGGATAA+AGG + Chr8:67318607-67318626 None:intergenic 40.0%
ATAAAAATCAGTCTGGCAGC+TGG + Chr8:67317506-67317525 None:intergenic 40.0%
ATAAAGGCCAAAACCTGCAA+GGG + Chr8:67318591-67318610 None:intergenic 40.0%
ATCCGTCTTCTAAACTGTTG+AGG + Chr8:67317866-67317885 None:intergenic 40.0%
ATCTATTCCTGTCCTAGATG+AGG - Chr8:67316316-67316335 MsG0880045988.01.T01:three_prime_UTR 40.0%
ATGGCAGAAGAACCAAACAA+TGG - Chr8:67315729-67315748 MsG0880045988.01.T01:three_prime_UTR 40.0%
ATTGGGTAAAAGCCACTGAT+TGG - Chr8:67316633-67316652 MsG0880045988.01.T01:CDS 40.0%
CAACTTCTTTCTGTATGCAG+GGG + Chr8:67318554-67318573 None:intergenic 40.0%
CCAGCAGTAAGTTATAGCAT+AGG + Chr8:67316980-67316999 None:intergenic 40.0%
CCTATGCTATAACTTACTGC+TGG - Chr8:67316977-67316996 MsG0880045988.01.T01:intron 40.0%
CTTTGTCTGTGGTTAAGAAG+TGG - Chr8:67316736-67316755 MsG0880045988.01.T01:intron 40.0%
GAAACAACGTTGTAGAATGC+AGG + Chr8:67318439-67318458 None:intergenic 40.0%
GATCCTAATGTCGATGATTG+CGG - Chr8:67316338-67316357 MsG0880045988.01.T01:three_prime_UTR 40.0%
GATCTTAACCTGCATTTCCT+TGG + Chr8:67318064-67318083 None:intergenic 40.0%
GCCAAATACTACATACAGTG+GGG + Chr8:67318614-67318633 None:intergenic 40.0%
GTCCAAGCTATTACTTGGAT+TGG - Chr8:67317024-67317043 MsG0880045988.01.T01:intron 40.0%
GTCCAATCCAAGTAATAGCT+TGG + Chr8:67317029-67317048 None:intergenic 40.0%
TAAAAATCAGTCTGGCAGCT+GGG + Chr8:67317505-67317524 None:intergenic 40.0%
TCCATTCACTCCACTGAAAT+GGG + Chr8:67317318-67317337 None:intergenic 40.0%
TCCCCACTGTATGTAGTATT+TGG - Chr8:67318610-67318629 MsG0880045988.01.T01:intron 40.0%
TGTCAAAGAACAATGGTGAC+TGG + Chr8:67316575-67316594 None:intergenic 40.0%
TTAACCACAGACAAAGAGCA+GGG + Chr8:67316732-67316751 None:intergenic 40.0%
! AAACGACCTAAACTTGTTCC+GGG - Chr8:67317727-67317746 MsG0880045988.01.T01:intron 40.0%
! CACTACAGAAAAGCATGCTT+TGG - Chr8:67316950-67316969 MsG0880045988.01.T01:intron 40.0%
! CTACAGAAAAGCATGCTTTG+GGG - Chr8:67316952-67316971 MsG0880045988.01.T01:intron 40.0%
! GAAACGACCTAAACTTGTTC+CGG - Chr8:67317726-67317745 MsG0880045988.01.T01:intron 40.0%
! TACAGAAAAGCATGCTTTGG+GGG - Chr8:67316953-67316972 MsG0880045988.01.T01:intron 40.0%
! TGTAAAAGGAAGGAGAGTGT+TGG + Chr8:67318516-67318535 None:intergenic 40.0%
! TTGGGTAAAAGCCACTGATT+GGG - Chr8:67316634-67316653 MsG0880045988.01.T01:CDS 40.0%
!! AGTTTGTTAACCACTCTGAG+AGG - Chr8:67316909-67316928 MsG0880045988.01.T01:intron 40.0%
!! CTTCTTGGTGTCATTGTTGT+TGG + Chr8:67315868-67315887 None:intergenic 40.0%
!!! TAGTTTTGGACTTTGCTGGT+TGG - Chr8:67316481-67316500 MsG0880045988.01.T01:CDS 40.0%
AATAGTGTCTTCGGAGATGC+AGG - Chr8:67318091-67318110 MsG0880045988.01.T01:intron 45.0%
AGAAAGGTGGTTACCATCCA+TGG - Chr8:67318038-67318057 MsG0880045988.01.T01:intron 45.0%
AGTTTAGGTCGTTTCCTTGG+CGG + Chr8:67317721-67317740 None:intergenic 45.0%
ATGCCGCAATCATCGACATT+AGG + Chr8:67316344-67316363 None:intergenic 45.0%
CAAGAAGGAAGTGACATAGG+AGG + Chr8:67315829-67315848 None:intergenic 45.0%
CATTTCAGTGGAGTGAATGG+AGG - Chr8:67317317-67317336 MsG0880045988.01.T01:intron 45.0%
CGACATTAGGATCCTCATCT+AGG + Chr8:67316331-67316350 None:intergenic 45.0%
CGCAACATGTTGCCATGATA+TGG - Chr8:67317472-67317491 MsG0880045988.01.T01:intron 45.0%
CTCCATTCACTCCACTGAAA+TGG + Chr8:67317319-67317338 None:intergenic 45.0%
CTGCCATTGTTCACTCTTTC+AGG + Chr8:67315716-67315735 None:intergenic 45.0%
CTGCTACAGTAGCCATTGTT+TGG + Chr8:67315744-67315763 None:intergenic 45.0%
CTTAACCACAGACAAAGAGC+AGG + Chr8:67316733-67316752 None:intergenic 45.0%
GAAGGAAGGTGATATGTTGG+AGG + Chr8:67318658-67318677 None:intergenic 45.0%
GAGGATTCAATACCAACGAC+AGG + Chr8:67318639-67318658 None:intergenic 45.0%
GATAAAGGCCAAAACCTGCA+AGG + Chr8:67318592-67318611 None:intergenic 45.0%
GCTTAAAAGGAAGGAGAGTG+TGG + Chr8:67318469-67318488 None:intergenic 45.0%
GGCGGAAAATCCATTCAAGA+AGG + Chr8:67315844-67315863 None:intergenic 45.0%
TAAAGGCCAAAACCTGCAAG+GGG + Chr8:67318590-67318609 None:intergenic 45.0%
TCCCATTTCAGTGGAGTGAA+TGG - Chr8:67317314-67317333 MsG0880045988.01.T01:intron 45.0%
TCTTCTCCCGGAACAAGTTT+AGG + Chr8:67317736-67317755 None:intergenic 45.0%
TTACGACTTAGCACCAACGA+CGG + Chr8:67317348-67317367 None:intergenic 45.0%
TTTGCTTACAGCCCAATCAG+TGG + Chr8:67316648-67316667 None:intergenic 45.0%
! AATGGAGGTTTTTCCGTCGT+TGG - Chr8:67317332-67317351 MsG0880045988.01.T01:intron 45.0%
! AGTATTTGGCTTCCTGTCGT+TGG - Chr8:67318624-67318643 MsG0880045988.01.T01:intron 45.0%
! TTAGGATCCTCATCTAGGAC+AGG + Chr8:67316326-67316345 None:intergenic 45.0%
! TTGGCAGGCACAAAAGCTTT+TGG - Chr8:67316256-67316275 MsG0880045988.01.T01:three_prime_UTR 45.0%
!! AAGGAAGGAGAGTGTTGGAA+CGG + Chr8:67318511-67318530 None:intergenic 45.0%
!! CTTGGTGTCATTGTTGTTGG+TGG + Chr8:67315865-67315884 None:intergenic 45.0%
!! TGGACTTTGCTGGTTGGTAA+TGG - Chr8:67316487-67316506 MsG0880045988.01.T01:CDS 45.0%
!!! AATATATTTTTAGATATTAA+TGG - Chr8:67317415-67317434 MsG0880045988.01.T01:intron 5.0%
AACCTGCATTTCCTTGGCCA+TGG + Chr8:67318058-67318077 None:intergenic 50.0%
AATGGCTACTGTAGCAGCAG+TGG - Chr8:67315747-67315766 MsG0880045988.01.T01:three_prime_UTR 50.0%
AGATGCATGGCATGCTGATC+TGG + Chr8:67316765-67316784 None:intergenic 50.0%
AGCTAAAGCCAAGACAGAGG+AGG - Chr8:67317985-67318004 MsG0880045988.01.T01:intron 50.0%
AGTGACATAGGAGGAGGTTC+CGG + Chr8:67315820-67315839 None:intergenic 50.0%
ATCCATGGCCAAGGAAATGC+AGG - Chr8:67318053-67318072 MsG0880045988.01.T01:intron 50.0%
CTGGGTTGCACACCATATCA+TGG + Chr8:67317487-67317506 None:intergenic 50.0%
GAAGGAAGTGACATAGGAGG+AGG + Chr8:67315826-67315845 None:intergenic 50.0%
GATGCATGGCATGCTGATCT+GGG + Chr8:67316764-67316783 None:intergenic 50.0%
TGCATTTCCTTGGCCATGGA+TGG + Chr8:67318054-67318073 None:intergenic 50.0%
! AAAAGGAAGGAGAGTGTGGC+AGG + Chr8:67318465-67318484 None:intergenic 50.0%
! AAAGGAAGGAGAGTGTGGCA+GGG + Chr8:67318464-67318483 None:intergenic 50.0%
!! AGGAAGGAGAGTGTTGGAAC+GGG + Chr8:67318510-67318529 None:intergenic 50.0%
!! GGTGTCATTGTTGTTGGTGG+CGG + Chr8:67315862-67315881 None:intergenic 50.0%
AGACAAACACCTCCCCTTGC+AGG - Chr8:67318575-67318594 MsG0880045988.01.T01:intron 55.0%
AGCAGCAGTGGCGATGAAGA+CGG - Chr8:67315759-67315778 MsG0880045988.01.T01:three_prime_UTR 55.0%
AGGTCGTTTCCTTGGCGGTT+GGG + Chr8:67317716-67317735 None:intergenic 55.0%
ATAGGAGGAGGTTCCGGCAA+CGG + Chr8:67315814-67315833 None:intergenic 55.0%
ATGAAGACGGTGACGCAGCA+TGG - Chr8:67315772-67315791 MsG0880045988.01.T01:three_prime_UTR 55.0%
CACACCCTGCTCTTTGTCTG+TGG - Chr8:67316725-67316744 MsG0880045988.01.T01:intron 55.0%
GGTTCCGGCAACGGAATCAA+TGG + Chr8:67315805-67315824 None:intergenic 55.0%
GTGGTTACCATCCATGGCCA+AGG - Chr8:67318044-67318063 MsG0880045988.01.T01:intron 55.0%
TAGGTCGTTTCCTTGGCGGT+TGG + Chr8:67317717-67317736 None:intergenic 55.0%
! AAGGAAGGAGAGTGTGGCAG+GGG + Chr8:67318463-67318482 None:intergenic 55.0%
! ACACCTCCCCTTGCAGGTTT+TGG - Chr8:67318581-67318600 MsG0880045988.01.T01:intron 55.0%
!! GCAGCCATTGATTCCGTTGC+CGG - Chr8:67315798-67315817 MsG0880045988.01.T01:three_prime_UTR 55.0%
AGGCCAAAACCTGCAAGGGG+AGG + Chr8:67318587-67318606 None:intergenic 60.0%
CAGATGAACCCCAACCGCCA+AGG - Chr8:67317704-67317723 MsG0880045988.01.T01:intron 60.0%
GGTCGTTTCCTTGGCGGTTG+GGG + Chr8:67317715-67317734 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 67315707 67318867 67315707 ID=MsG0880045988.01;Name=MsG0880045988.01
Chr8 mRNA 67315707 67318867 67315707 ID=MsG0880045988.01.T01;Parent=MsG0880045988.01;Name=MsG0880045988.01.T01;_AED=0.49;_eAED=0.49;_QI=22|1|1|1|1|1|4|666|254
Chr8 exon 67315707 67316702 67315707 ID=MsG0880045988.01.T01:exon:15608;Parent=MsG0880045988.01.T01
Chr8 exon 67316797 67316867 67316797 ID=MsG0880045988.01.T01:exon:15607;Parent=MsG0880045988.01.T01
Chr8 exon 67318164 67318311 67318164 ID=MsG0880045988.01.T01:exon:15606;Parent=MsG0880045988.01.T01
Chr8 exon 67318630 67318867 67318630 ID=MsG0880045988.01.T01:exon:15605;Parent=MsG0880045988.01.T01
Chr8 five_prime_UTR 67318846 67318867 67318846 ID=MsG0880045988.01.T01:five_prime_utr;Parent=MsG0880045988.01.T01
Chr8 CDS 67318630 67318845 67318630 ID=MsG0880045988.01.T01:cds;Parent=MsG0880045988.01.T01
Chr8 CDS 67318164 67318311 67318164 ID=MsG0880045988.01.T01:cds;Parent=MsG0880045988.01.T01
Chr8 CDS 67316797 67316867 67316797 ID=MsG0880045988.01.T01:cds;Parent=MsG0880045988.01.T01
Chr8 CDS 67316373 67316702 67316373 ID=MsG0880045988.01.T01:cds;Parent=MsG0880045988.01.T01
Chr8 three_prime_UTR 67315707 67316372 67315707 ID=MsG0880045988.01.T01:three_prime_utr;Parent=MsG0880045988.01.T01
Gene Sequence

>MsG0880045988.01.T01

ATGGCAGAAGAACCAAACAATGGCTACTGTAGCAGCAGTGGCGATGAAGACGGTGACGCAGCATGGAGAGCAGCCATTGATTCCGTTGCCGGAACCTCCTCCTATGTCACTTCCTTCTTGAATGGATTTTCCGCCACCAACAACAATGACACCAAGAAGAAGCATAATGATAATCAAAACCCTAAATCCCCAAAGATTAAGCACTACCAACTTAAGGCACAAAAGCTTTTGGATGACATAGTGGAAAATACAATTGAGATAGTGAAAGAATCTATTCCTGTCCTAGATGAGGATCCTAATGTCGATGATTGCGGCATTCGCCTGTTTAGACATTCTAAACCAGGAATAGTTTTTGATCATGCAGATGAACCCCAACCGCCAAGGAAACGACCTAAACTTGTTCCGGGAGAAGATATTGATGAGAAATCAAAGAAGTTTAGAAGACGGATTCAATCTATTGCTGTAGATGGAAAAGATTTAATTGCTGCAGCAAATGATGCATACAAGAAATCATTGGCTAGACTAGAAGCTAAAGATGCAGCAGCAAAAGCTAAAGCCAAGACAGAGGAGGAAAGAATTGAGAAATTGAAAAAATTAGGGGAGAAAGGTGGTTACCATCCATGGCCAAGGAAATGCAGGTTAAGATCAAACACTAATAGTGTCTTCGGAGATGCAGGTCAAACATCAATACTGACATTGGCTTTGAATTATTGTCCTCTTTACTTTAATGTTGTTTATGTGTATGTTGATGATAAAAATTGTTGA
Protein sequence

>MsG0880045988.01.T01

MAEEPNNGYCSSSGDEDGDAAWRAAIDSVAGTSSYVTSFLNGFSATNNNDTKKKHNDNQNPKSPKIKHYQLKAQKLLDDIVENTIEIVKESIPVLDEDPNVDDCGIRLFRHSKPGIVFDHADEPQPPRKRPKLVPGEDIDEKSKKFRRRIQSIAVDGKDLIAAANDAYKKSLARLEAKDAAAKAKAKTEEERIEKLKKLGEKGGYHPWPRKCRLRSNTNSVFGDAGQTSILTLALNYCPLYFNVVYVYVDDKNC*