AlfalfaGEDB | MsG0780040094.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040094.01

KEGG: K14684
GO: GO:0005509 GO:0055085
PFAM: PF00153 PF13202

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040094.01.T01	KEH23500.1	84.127	504	63	2	1	503	1	488	0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040094.01.T01	Q9FI43	57.853	503	187	4	3	503	8	487	0	582

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040094.01.T01	A0A072UCC3	84.127	504	63	2	1	503	1	488	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003198.01	MsG0780040094.01	0.832658	8.334847e-56	9.377776e-53
MsG0180004987.01	MsG0780040094.01	0.820503	6.625860e-53	5.252087e-50
MsG0280010198.01	MsG0780040094.01	0.814775	1.297170e-51	8.783195e-49
MsG0280010974.01	MsG0780040094.01	0.813570	2.393814e-51	1.568874e-48
MsG0380013992.01	MsG0780040094.01	0.809353	1.973716e-50	1.156262e-47
MsG0380014053.01	MsG0780040094.01	0.824273	8.825793e-54	7.780155e-51
MsG0380014624.01	MsG0780040094.01	0.812831	3.478417e-51	2.234430e-48
MsG0380015733.01	MsG0780040094.01	0.822909	1.840524e-53	1.561305e-50
MsG0380016751.01	MsG0780040094.01	0.813188	2.905240e-51	1.884250e-48
MsG0480018324.01	MsG0780040094.01	0.801850	7.413083e-49	3.577348e-46

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PPI

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Gene1	Gene2	Type
MsG0780040094.01	MsG0280007044.01	PPI
MsG0780040094.01	MsG0480023458.01	PPI
MsG0780040094.01	MsG0580024352.01	PPI
MsG0780040094.01	MsG0880046474.01	PPI
MsG0780040094.01	MsG0380011868.01	PPI
MsG0780040094.01	MsG0780038853.01	PPI
MsG0780040094.01	MsG0380016364.01	PPI
MsG0780040094.01	MsG0280008008.01	PPI
MsG0780040094.01	MsG0380017285.01	PPI
MsG0780040094.01	MsG0580029065.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040094.01.T01	MTR_7g084400	84.127	504	63	2	1	503	1	488	0.0	842
MsG0780040094.01.T01	MTR_7g084400	86.957	414	31	2	1	413	1	392	0.0	725
MsG0780040094.01.T01	MTR_7g084400	26.519	181	123	3	324	498	207	383	1.38e-12	70.1
MsG0780040094.01.T01	MTR_8g096050	59.281	501	170	5	11	503	31	505	0.0	597
MsG0780040094.01.T01	MTR_3g098460	56.680	494	184	4	16	503	14	483	0.0	559
MsG0780040094.01.T01	MTR_5g009500	36.677	319	158	8	223	503	29	341	7.47e-54	185
MsG0780040094.01.T01	MTR_5g009500	28.922	204	126	5	221	405	134	337	2.34e-15	77.8
MsG0780040094.01.T01	MTR_8g027975	33.125	320	160	6	226	503	49	356	7.84e-53	182
MsG0780040094.01.T01	MTR_3g107510	33.571	280	175	5	226	500	120	393	3.77e-42	155
MsG0780040094.01.T01	MTR_4g114320	34.752	282	173	5	224	500	119	394	1.96e-41	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040094.01.T01	AT5G51050	57.853	503	187	4	3	503	19	498	0.0	582
MsG0780040094.01.T01	AT5G07320	56.151	504	189	4	3	503	5	479	0.0	544
MsG0780040094.01.T01	AT5G61810	54.851	505	194	6	3	503	4	478	0.0	541
MsG0780040094.01.T01	AT5G61810	61.224	343	122	4	164	503	1	335	2.21e-145	420
MsG0780040094.01.T01	AT4G01100	36.909	317	152	7	226	503	40	347	1.09e-55	190
MsG0780040094.01.T01	AT4G01100	33.837	331	157	6	226	503	40	361	2.09e-53	184
MsG0780040094.01.T01	AT4G01100	36.066	305	147	7	238	503	2	297	1.71e-51	177
MsG0780040094.01.T01	AT4G01100	30.622	209	123	5	228	415	95	302	5.56e-17	82.0
MsG0780040094.01.T01	AT4G32400	34.397	282	174	4	224	500	110	385	8.90e-42	154
MsG0780040094.01.T01	AT3G53940	32.890	301	177	6	221	501	66	361	5.35e-35	135

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Find 129 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGATCCATTGTTAC+TGG	0.413032	7:+72991791	None:intergenic
AAAACTCTTTGGAAAGAAGG+TGG	0.573548	7:-72989666	MsG0780040094.01.T01:CDS
AAAATCTAATGGCACTCTCA+GGG	0.534392	7:+72989595	None:intergenic
AAAGATATATGGGTTCAGGA+AGG	0.664054	7:-72989366	MsG0780040094.01.T01:CDS
AAAGGCTGATATTGGAGGTA+TGG	0.476181	7:-72989520	MsG0780040094.01.T01:CDS
AAATCTAATGGCACTCTCAG+GGG	0.691447	7:+72989596	None:intergenic
AACATGCTTACCAACACCTG+CGG	0.635492	7:+72989818	None:intergenic
AACATGTGTTTACCCATTAC+AGG	0.319704	7:-72989079	MsG0780040094.01.T01:CDS
AACCCTTTCAAAAGATATAT+GGG	0.382815	7:-72989376	MsG0780040094.01.T01:CDS
AAGCAATCCGGTGAAGAAAC+CGG	0.419136	7:-72991816	MsG0780040094.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGATCCATTGTTAC+TGG	+	Chr7:72988833-72988852	None:intergenic	30.0%
AAAGTCAGAGAATAATTTGG+TGG	-	Chr7:72989534-72989553	MsG0780040094.01.T01:CDS	30.0%
AAATGTTGAAGTTGGATGTA+AGG	-	Chr7:72990493-72990512	MsG0780040094.01.T01:intron	30.0%
AAGTATATTATTCAGGAAGG+AGG	-	Chr7:72991380-72991399	MsG0780040094.01.T01:intron	30.0%
ACATTTACCATTATTTGGAG+CGG	-	Chr7:72990743-72990762	MsG0780040094.01.T01:intron	30.0%
AGAAAAACCTTGAAACATGA+AGG	-	Chr7:72991721-72991740	MsG0780040094.01.T01:CDS	30.0%
AGAATTTAAACACCAACTGA+AGG	+	Chr7:72991453-72991472	None:intergenic	30.0%
ATTGATGTTGAACATAATGG+TGG	-	Chr7:72989114-72989133	MsG0780040094.01.T01:intron	30.0%
CAAATACGATAGTACTGTTA+AGG	-	Chr7:72989387-72989406	MsG0780040094.01.T01:CDS	30.0%
CAATGGCTTAAATGTTCTTA+AGG	-	Chr7:72990999-72991018	MsG0780040094.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	72988788	72991855	72988788	ID=MsG0780040094.01;Name=MsG0780040094.01
Chr7	mRNA	72988788	72991855	72988788	ID=MsG0780040094.01.T01;Parent=MsG0780040094.01;Name=MsG0780040094.01.T01;_AED=0.17;_eAED=0.19;_QI=0\|0\|0\|1\|1\|1\|4\|0\|503
Chr7	exon	72991442	72991855	72991442	ID=MsG0780040094.01.T01:exon:13033;Parent=MsG0780040094.01.T01
Chr7	exon	72989242	72990069	72989242	ID=MsG0780040094.01.T01:exon:13032;Parent=MsG0780040094.01.T01
Chr7	exon	72989066	72989132	72989066	ID=MsG0780040094.01.T01:exon:13031;Parent=MsG0780040094.01.T01
Chr7	exon	72988788	72988990	72988788	ID=MsG0780040094.01.T01:exon:13030;Parent=MsG0780040094.01.T01
Chr7	CDS	72991442	72991855	72991442	ID=MsG0780040094.01.T01:cds;Parent=MsG0780040094.01.T01
Chr7	CDS	72989242	72990069	72989242	ID=MsG0780040094.01.T01:cds;Parent=MsG0780040094.01.T01
Chr7	CDS	72989066	72989132	72989066	ID=MsG0780040094.01.T01:cds;Parent=MsG0780040094.01.T01
Chr7	CDS	72988788	72988990	72988788	ID=MsG0780040094.01.T01:cds;Parent=MsG0780040094.01.T01

Gene Sequence

>MsG0780040094.01.T01

ATGCCGAAGGAGGAACGAAGCAATCCGGTGAAGAAACCGGGTCCAGTAACAATGGATCATGTTTTACTGGCATCACAAGAGACAAAGGAAGAAAGGGATGAGAGAATCAGAAGCATTTTTGCCTTTTTTGATAAGGAAAATCGCGGTTATTTGGAATTTTCACACATTGAGGCTGGTTATTTGGCTCTGGAGATACCGTCTGAGTATAAATACGCGATGGATTTGTTGAATGCTTGTGATGTAAACAAAGATGGACGTGTTGATTTTGTTGAGTTTAAGAAGTATATGGATGATAAGAGCTTGAGCTTTATCGGATTTTTCAGGCTATTGATGTTGAACATAATGGTGGCATTTTGCCGGAGGAGTTGGGAGGCACTTGTTAGAGCAGGCATGTCTTCTTTTGTTGATATCTTATTGGTTCATTCTATAAACCACACCAGTCTCTCTTTTTCAGGGATTAAAATTGATGATGAGGAACTTGCTCATTTCGTCGAGCGTGTTGATAAGGATCATAATGGTGTTATAACATTTGAGGAATGGAGGGATTTTCTGCTGCTTTATCCTCATGAGGCAACTATTGAGAACATTTACCATTATTTGGAGCGGATATGCATGGTCGATATCGGGGAACATACTGTTATTCCCGCAGGTGTTGGTAAGCATGTTCATGCATATAGGTATCTTATTGCAGGAGGAGTGGCAGGTGCTGCATCACGGACAGCAACTGCACCTCTCGACCGTCTAAAGGTTGTATTGCAAGTCCAAACAACAAGTGCTCGCATAATGCCTGCAGTAAAAACTCTTTGGAAAGAAGGTGGTTTAGTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGATGAAGACCTTCATTGTGGATGCTAAAGGAGGAGAGGAAAAGGCTGATATTGGAGGTATGGGGCGGCTGCTGGCTGGTGGTATAGCTGGTGCTGTAGCTCAAACTGCGATATATCCTATGGATCTGGTTAAGACACGACTACAAACATATACTCATGCAAGTGGAAAAGTTCCTAGCCTTGGAACCCTTTCAAAAGATATATGGGTTCAGGAAGGACCCCGGGCTTTTTATAGGGGATTGATTCCTTCTATTGTTGGGATTATCCCGTATGCTGGGATAGATCTAGCTGCTTATGAAACCTTGAAGGAGATGTCCAAAAGTATATTATTCAGGAAGGAGGATGTGGCACGGTATCAGGAGCTCTTGGAGCAACATGTGTTTACCCATTACAGGTCATCAGAACAAGAATGTAAAACAGCTTCTGATTTCAGAATGCAGGCCCAAAGCTCTTATAAAGGAATGGCAGATGTGTTCAGAAAAACCTTGAAACATGAAGGACTTAGGGGATTCTACAAAGGAATATTCCCCAACTTGCTCAAAGTTGTCCCATCAGCAAGTATCACTTACATGGTTTACGAGTCTATGAAGAAAAGTTTGGATTTGGAGTGA

Protein sequence

>MsG0780040094.01.T01

MPKEERSNPVKKPGPVTMDHVLLASQETKEERDERIRSIFAFFDKENRGYLEFSHIEAGYLALEIPSEYKYAMDLLNACDVNKDGRVDFVEFKKYMDDKSLSFIGFFRLLMLNIMVAFCRRSWEALVRAGMSSFVDILLVHSINHTSLSFSGIKIDDEELAHFVERVDKDHNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEHTVIPAGVGKHVHAYRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTSARIMPAVKTLWKEGGLVGFFRGNGLNVLKVAPESAIRFYTYEMMKTFIVDAKGGEEKADIGGMGRLLAGGIAGAVAQTAIYPMDLVKTRLQTYTHASGKVPSLGTLSKDIWVQEGPRAFYRGLIPSIVGIIPYAGIDLAAYETLKEMSKSILFRKEDVARYQELLEQHVFTHYRSSEQECKTASDFRMQAQSSYKGMADVFRKTLKHEGLRGFYKGIFPNLLKVVPSASITYMVYESMKKSLDLE*