AlfalfaGEDB | MsG0880047234.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047234.01

KEGG: -
GO: GO:0005515
PFAM: PF01535 PF13041

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047234.01.T01	XP_039685716.1	92.5	520	15	3	1	519	1	497	0	991

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047234.01.T01	Q9SQU6	71.975	471	105	3	51	517	37	484	0	703

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047234.01.T01	A0A396G920	92.500	520	15	3	1	519	1	497	0.0	991

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0880047234.01	0.828575	8.329138e-55	8.312017e-52
MsG0080047945.01	MsG0880047234.01	0.823985	1.031179e-53	9.016933e-51
MsG0080047955.01	MsG0880047234.01	0.851023	1.162354e-60	2.321080e-57
MsG0080047956.01	MsG0880047234.01	0.830855	2.321765e-55	2.476352e-52
MsG0080047989.01	MsG0880047234.01	0.846177	2.557677e-59	4.365030e-56
MsG0080048068.01	MsG0880047234.01	0.855546	5.865641e-62	1.359057e-58
MsG0080048191.01	MsG0880047234.01	0.819182	1.328232e-52	1.014850e-49
MsG0080048198.01	MsG0880047234.01	0.820232	7.646301e-53	6.015579e-50
MsG0080048528.01	MsG0880047234.01	0.883926	2.966199e-71	1.917904e-67
MsG0080048727.01	MsG0880047234.01	0.838093	3.529732e-57	4.677920e-54

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PPI

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Gene1	Gene2	Type
MsG0280007044.01	MsG0880047234.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047234.01.T01	MTR_4g123860	92.486	519	15	3	2	519	1	496	0.0	989
MsG0880047234.01.T01	MTR_7g056613	42.953	447	232	2	75	518	81	507	1.16e-120	364
MsG0880047234.01.T01	MTR_3g033040	36.947	452	261	2	54	501	41	472	6.73e-108	330
MsG0880047234.01.T01	MTR_3g033040	25.733	307	186	4	145	413	187	489	3.07e-22	100
MsG0880047234.01.T01	MTR_3g033040	36.947	452	261	2	54	501	41	472	1.95e-107	331
MsG0880047234.01.T01	MTR_8g091670	28.267	375	209	6	120	490	96	414	9.08e-41	153
MsG0880047234.01.T01	MTR_3g053350	28.024	339	234	4	157	491	343	675	3.23e-36	144
MsG0880047234.01.T01	MTR_3g053350	24.422	389	254	4	164	517	244	627	1.58e-31	129
MsG0880047234.01.T01	MTR_3g053350	21.390	374	257	3	158	496	449	820	1.02e-24	108
MsG0880047234.01.T01	MTR_3g053350	23.208	293	218	3	208	497	218	506	2.82e-20	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047234.01.T01	AT3G06430	71.975	471	105	3	51	517	37	484	0.0	703
MsG0880047234.01.T01	AT5G48730	39.258	512	263	7	7	497	2	486	1.20e-114	348
MsG0880047234.01.T01	AT3G53170	37.736	424	241	2	88	511	91	491	5.35e-105	323
MsG0880047234.01.T01	AT3G53170	37.736	424	241	2	88	511	91	491	5.35e-105	323
MsG0880047234.01.T01	AT3G53170	37.740	416	239	1	88	503	41	436	7.80e-105	321
MsG0880047234.01.T01	AT3G53170	34.198	424	229	3	88	511	91	464	1.01e-89	283
MsG0880047234.01.T01	AT4G39620	27.532	385	219	5	120	500	112	440	3.76e-43	160
MsG0880047234.01.T01	AT4G39620	27.532	385	219	5	120	500	112	440	5.61e-43	161
MsG0880047234.01.T01	AT5G02860	29.940	334	226	4	163	493	316	644	1.35e-40	157
MsG0880047234.01.T01	AT5G02860	24.518	363	234	7	163	488	210	569	6.32e-32	130

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Find 132 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCAGGCTGACAAAG+AGG	0.595806	8:+83650345	None:intergenic
AAAAGCTGATGGGCACGTTG+GGG	0.636648	8:+83650492	None:intergenic
AAACAGCTGCTCAAGACAAA+TGG	0.483646	8:+83649397	None:intergenic
AAAGAACAATGCTAAAGCCT+GGG	0.582329	8:-83651447	MsG0880047234.01.T01:CDS
AAAGATGTTTCAGAAACACC+AGG	0.668914	8:+83651524	None:intergenic
AACACAATCATTGGTGTCTT+TGG	0.258634	8:-83650102	MsG0880047234.01.T01:CDS
AACATACTCAATCATGGTCG+AGG	0.613658	8:-83649584	MsG0880047234.01.T01:CDS
AATATCTTGATTGGCTCCTA+TGG	0.375620	8:-83649997	MsG0880047234.01.T01:CDS
AATCACATTGTTATAAGTAC+TGG	0.445708	8:+83649903	None:intergenic
AATGCATTGACAAGAAACAA+TGG	0.680130	8:-83651397	MsG0880047234.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAACACTGGAAACA+AGG	-	Chr8:83648930-83648949	MsG0880047234.01.T01:three_prime_UTR	30.0%
ATGAAAAGTTCCGTAATTTC+GGG	-	Chr8:83650440-83650459	MsG0880047234.01.T01:CDS	30.0%
CAACTACTTAAATTACCGAA+TGG	+	Chr8:83651450-83651469	None:intergenic	30.0%
CAACTTAAGATTTAATCCTC+GGG	+	Chr8:83651015-83651034	None:intergenic	30.0%
CATTTGCAAAACCATTGATA+AGG	+	Chr8:83650705-83650724	None:intergenic	30.0%
CCCAATTCAAATTAAGAGTT+TGG	-	Chr8:83649818-83649837	MsG0880047234.01.T01:CDS	30.0%
GGATGCTTTCAAATTTGAAT+TGG	-	Chr8:83650192-83650211	MsG0880047234.01.T01:CDS	30.0%
TGCTAATCACTTTATGAAAG+AGG	+	Chr8:83650732-83650751	None:intergenic	30.0%
TTAAGTAGTTGTGAGATTTC+TGG	-	Chr8:83651459-83651478	MsG0880047234.01.T01:CDS	30.0%
TTCATCATGAAAAATGAAGC+TGG	+	Chr8:83651158-83651177	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	83648747	83651759	83648747	ID=MsG0880047234.01;Name=MsG0880047234.01
Chr8	mRNA	83648747	83651759	83648747	ID=MsG0880047234.01.T01;Parent=MsG0880047234.01;Name=MsG0880047234.01.T01;_AED=0.33;_eAED=0.35;_QI=0\|0\|0.5\|1\|0\|0.5\|2\|736\|519
Chr8	exon	83648747	83650604	83648747	ID=MsG0880047234.01.T01:exon:20833;Parent=MsG0880047234.01.T01
Chr8	exon	83651322	83651759	83651322	ID=MsG0880047234.01.T01:exon:20832;Parent=MsG0880047234.01.T01
Chr8	CDS	83651322	83651759	83651322	ID=MsG0880047234.01.T01:cds;Parent=MsG0880047234.01.T01
Chr8	CDS	83649483	83650604	83649483	ID=MsG0880047234.01.T01:cds;Parent=MsG0880047234.01.T01
Chr8	three_prime_UTR	83648747	83649482	83648747	ID=MsG0880047234.01.T01:three_prime_utr;Parent=MsG0880047234.01.T01

Gene Sequence

>MsG0880047234.01.T01

ATGATGGATATGGCTTCCGTCTCTCTCACATTTTCTTCTTCTATCGTTCCTTCTCCAATTCCCCAACACAACAAAACCACCCACAACAACCCCAGAAAACCCCAACTTCCAATTTTCTACGCAGTTTCATCTCCACCATCAAAAACCGCTTCTGCTTCTAATTCCTCCTCGCCTTCAGTTGTCAAAAAGAAACACTGGAAACAAGGTGAGTTTCCTGGTGTTTCTGAAACATCTTTACCTTCTACTACGAGGAGGAAACCCATTAAAAATGTCAAGAAAAAATTGGACAGAAAGAACAATGCTAAAGCCTGGGCTAACACTGTTACTGAAGCCTTATGTGAATGCATTGACAAGAAACAATGGCTTCAAGCTCTTGAGGTATACACACTCACCAATTTTGAAGTTATAAATCATTACTTTATTTTTTGCAAATTCAGGACACTTGACATGCTAAGAGAACAACCCTTTTACCAACCCAGAGAAGGGACTTACATGAAACTAATTGTGCTACTTGGAAAATCTGGTCAACCCCAACGTGCCCATCAGCTTTTTACCGCAATGATTGAAGAGGGTTGTGACCCTACTCCTGAACTATACACCGCATTGCTCGCTGCATATTGCAGGAGCAACATGATTGATGAGGCGCTATTAATTCTCGATGAGATGAAGAACCATCCTCTTTGTCAGCCTGATGTTTTCACTTACAGTACGTTGATAAAAGTCTGTGTGGATGCTTTCAAATTTGAATTGGTTGACTTGTTGTATGAAGAAATGGCTCAAAGATCCATCATGCCTAACACTGTTACACAAAACATTGTTTTGAATGGTTATGGTAAGGCAGGGATGTTTGATCAGATGGAGAAAGTTCTGTCAGGTATGCTGCAGAGCACTGATTGCAAGCCTGATGTCTGGACCATGAACACAATCATTGGTGTCTTTGGTAATATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAGTTCCGTAATTTCGGGATAGAACCAGAAACACGCACTTTCAATATCTTGATTGGCTCCTATGGAAAGAAAAGAATGTATGACAAGATGTCATCTGTTATGGAGTATATGCGGAAGTTGCAATTTCCGTGGACAACCAGTACTTATAACAATGTGATTGAGGCATTTGCAGAGGCAGGTGATGCTAAAAACATGGAGTATACATTTAATCAGATGCGTTCCGAGGGTATGAGAGCAGATACCAAAACATTCTGCTGCCTTATCAATGGTTTTGCAAATGCAGGCCTCTTTCATAAAGTGATTAGCAGTGTTCAATTGGCTGCAAAGCTTGAAATACCTCTGAACACTGCCTTTTATAATGCAGTCTTATCTGCATGTGCAAAGGCGGAAGATTTAATGGAAATGGACAGAGTTTTCATGCGTATGAAAGATACCCAATGTCCACCGGATGACACAACATACTCAATCATGGTCGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATATTATTTGGAACAGGAAAAGCAGACGATGATAACTGACGATAAGATAGAGAACCAACCCGAGGATTAA

Protein sequence

>MsG0880047234.01.T01

MMDMASVSLTFSSSIVPSPIPQHNKTTHNNPRKPQLPIFYAVSSPPSKTASASNSSSPSVVKKKHWKQGEFPGVSETSLPSTTRRKPIKNVKKKLDRKNNAKAWANTVTEALCECIDKKQWLQALEVYTLTNFEVINHYFIFCKFRTLDMLREQPFYQPREGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYCRSNMIDEALLILDEMKNHPLCQPDVFTYSTLIKVCVDAFKFELVDLLYEEMAQRSIMPNTVTQNIVLNGYGKAGMFDQMEKVLSGMLQSTDCKPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLINGFANAGLFHKVISSVQLAAKLEIPLNTAFYNAVLSACAKAEDLMEMDRVFMRMKDTQCPPDDTTYSIMVEAYRKEGMNDKIYYLEQEKQTMITDDKIENQPED*