AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007677.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007677.01.T01 MTR_2g029740 95.960 297 12 0 1 297 59 355 0.0 584
MsG0280007677.01.T01 MTR_2g029750 87.542 297 36 1 1 297 59 354 0.0 531
MsG0280007677.01.T01 MTR_2g028980 81.818 297 54 0 1 297 59 355 2.13e-180 501
MsG0280007677.01.T01 MTR_2g029800 76.431 297 68 1 1 297 59 353 3.56e-163 457
MsG0280007677.01.T01 MTR_2g029815 75.421 297 70 2 1 297 59 352 2.01e-160 451
MsG0280007677.01.T01 MTR_2g029820 72.391 297 82 0 1 297 59 355 6.65e-157 442
MsG0280007677.01.T01 MTR_2g029830 72.483 298 81 1 1 297 58 355 8.52e-156 439
MsG0280007677.01.T01 MTR_2g029560 71.777 287 79 1 3 289 56 340 2.50e-148 420
MsG0280007677.01.T01 MTR_2g029860 70.034 297 87 1 1 297 59 353 2.01e-145 413
MsG0280007677.01.T01 MTR_2g029830 71.731 283 79 1 16 297 5 287 4.07e-145 409
MsG0280007677.01.T01 MTR_2g029730 71.429 273 78 0 3 275 57 329 1.18e-139 398
MsG0280007677.01.T01 MTR_2g029850 67.347 294 93 1 3 296 61 351 1.49e-138 395
MsG0280007677.01.T01 MTR_2g029910 65.424 295 97 2 3 296 62 352 1.52e-136 390
MsG0280007677.01.T01 MTR_7g093370 59.341 273 110 1 1 272 99 371 2.11e-112 330
MsG0280007677.01.T01 MTR_1g054205 58.672 271 111 1 3 272 56 326 2.69e-109 320
MsG0280007677.01.T01 MTR_5g021060 55.515 272 120 1 1 272 60 330 1.76e-101 300
MsG0280007677.01.T01 MTR_8g076820 52.574 272 128 1 1 272 60 330 1.58e-97 290
MsG0280007677.01.T01 MTR_4g125940 53.650 274 123 2 1 272 3 274 5.95e-96 284
MsG0280007677.01.T01 MTR_4g125940 53.650 274 123 2 1 272 58 329 3.65e-95 284
MsG0280007677.01.T01 MTR_2g040000 50.909 275 130 2 1 272 59 331 1.47e-91 275
MsG0280007677.01.T01 MTR_1g022970 51.103 272 133 0 1 272 76 347 2.46e-90 273
MsG0280007677.01.T01 MTR_7g072510 49.632 272 128 2 1 272 50 312 5.89e-90 270
MsG0280007677.01.T01 MTR_4g029170 51.460 274 122 4 1 272 57 321 1.65e-88 267
MsG0280007677.01.T01 MTR_4g029200 50.741 270 124 2 3 272 78 338 5.94e-88 266
MsG0280007677.01.T01 MTR_3g072190 51.111 270 123 2 3 272 58 318 9.41e-88 265
MsG0280007677.01.T01 MTR_4g029180 51.095 274 123 4 1 272 57 321 1.08e-87 265
MsG0280007677.01.T01 MTR_4g029190 50.735 272 123 3 3 272 78 340 1.22e-86 263
MsG0280007677.01.T01 MTR_5g017860 49.084 273 135 3 1 272 57 326 1.68e-86 262
MsG0280007677.01.T01 MTR_5g083860 49.270 274 128 4 1 272 61 325 1.44e-85 259
MsG0280007677.01.T01 MTR_7g072480 50.000 272 127 2 1 272 54 316 2.26e-85 259
MsG0280007677.01.T01 MTR_3g094650 51.493 268 119 4 3 268 60 318 3.90e-85 258
MsG0280007677.01.T01 MTR_5g074970 52.174 276 119 5 1 272 60 326 4.18e-84 256
MsG0280007677.01.T01 MTR_3g466200 50.183 273 124 5 3 272 57 320 6.80e-84 255
MsG0280007677.01.T01 MTR_4g122640 48.718 273 135 3 1 272 68 336 9.28e-84 255
MsG0280007677.01.T01 MTR_5g017850 48.175 274 136 4 1 272 57 326 1.06e-83 255
MsG0280007677.01.T01 MTR_4g083710 49.455 275 129 4 1 272 57 324 2.63e-83 254
MsG0280007677.01.T01 MTR_2g084020 47.407 270 134 2 3 272 57 318 6.53e-82 250
MsG0280007677.01.T01 MTR_2g029880 59.346 214 73 3 83 296 9 208 1.92e-80 243
MsG0280007677.01.T01 MTR_4g031140 45.221 272 144 3 3 274 60 326 2.18e-80 247
MsG0280007677.01.T01 MTR_5g014100 47.826 276 140 2 1 272 56 331 2.21e-80 246
MsG0280007677.01.T01 MTR_5g074740 48.188 276 132 4 1 273 55 322 2.25e-80 246
MsG0280007677.01.T01 MTR_5g074760 48.551 276 131 4 1 273 55 322 2.32e-80 246
MsG0280007677.01.T01 MTR_5g049280 46.350 274 142 5 3 272 65 337 4.18e-80 246
MsG0280007677.01.T01 MTR_2g008710 47.464 276 134 5 1 272 57 325 7.39e-80 245
MsG0280007677.01.T01 MTR_5g074860 48.327 269 128 4 3 268 61 321 2.21e-79 244
MsG0280007677.01.T01 MTR_2g084080 46.296 270 136 2 3 272 57 317 5.89e-79 243
MsG0280007677.01.T01 MTR_2g084110 46.667 270 135 2 3 272 57 317 1.07e-78 242
MsG0280007677.01.T01 MTR_4g133800 45.985 274 137 6 1 273 71 334 2.06e-78 242
MsG0280007677.01.T01 MTR_2g084010 46.667 270 136 2 3 272 57 318 2.44e-78 241
MsG0280007677.01.T01 MTR_4g030890 44.853 272 145 3 3 274 132 398 2.66e-78 244
MsG0280007677.01.T01 MTR_5g074710 47.826 276 133 4 1 273 55 322 3.23e-78 241
MsG0280007677.01.T01 MTR_3g072190 48.649 259 124 2 14 272 2 251 3.89e-78 238
MsG0280007677.01.T01 MTR_2g084000 46.324 272 138 2 1 272 56 319 4.81e-78 240
MsG0280007677.01.T01 MTR_1g115900 45.985 274 137 4 1 272 57 321 5.41e-78 240
MsG0280007677.01.T01 MTR_3g466180 46.324 272 137 2 1 272 61 323 1.87e-77 239
MsG0280007677.01.T01 MTR_4g074995 47.273 275 122 4 1 272 54 308 2.06e-77 238
MsG0280007677.01.T01 MTR_3g092990 44.322 273 149 2 1 272 56 326 6.17e-77 238
MsG0280007677.01.T01 MTR_3g094670 49.259 270 126 4 1 268 58 318 7.43e-77 237
MsG0280007677.01.T01 MTR_4g046713 46.886 273 141 3 1 272 57 326 4.59e-76 235
MsG0280007677.01.T01 MTR_7g026990 45.556 270 137 3 3 272 63 322 4.73e-76 235
MsG0280007677.01.T01 MTR_2g437770 46.886 273 133 6 1 272 80 341 1.38e-75 234
MsG0280007677.01.T01 MTR_2g084090 45.018 271 139 3 3 272 57 318 2.80e-75 233
MsG0280007677.01.T01 MTR_7g107520 46.691 272 139 4 1 272 55 320 6.84e-75 232
MsG0280007677.01.T01 MTR_3g094630 48.905 274 129 4 1 272 58 322 8.73e-75 232
MsG0280007677.01.T01 MTR_2g088770 45.255 274 144 5 1 272 56 325 4.48e-74 230
MsG0280007677.01.T01 MTR_5g022870 45.055 273 140 7 1 272 53 316 1.45e-72 226
MsG0280007677.01.T01 MTR_7g086820 43.066 274 147 5 1 274 50 314 4.26e-72 225
MsG0280007677.01.T01 MTR_4g074990 44.364 275 127 3 1 272 54 305 5.42e-72 224
MsG0280007677.01.T01 MTR_3g467600 45.091 275 141 3 1 272 57 324 1.12e-71 224
MsG0280007677.01.T01 MTR_4g114210 44.118 272 142 5 5 272 55 320 1.27e-70 221
MsG0280007677.01.T01 MTR_5g016010 43.431 274 149 4 1 271 58 328 1.44e-70 221
MsG0280007677.01.T01 MTR_8g075100 42.125 273 148 6 1 272 56 319 6.59e-70 219
MsG0280007677.01.T01 MTR_1g086320 42.754 276 152 3 1 272 60 333 1.07e-69 219
MsG0280007677.01.T01 MTR_1g038680 43.796 274 148 5 3 272 61 332 1.00e-68 217
MsG0280007677.01.T01 MTR_1g086490 42.705 281 148 3 3 272 62 340 2.64e-68 216
MsG0280007677.01.T01 MTR_1g101830 42.279 272 151 4 1 272 57 322 4.19e-68 215
MsG0280007677.01.T01 MTR_1g009750 43.796 274 147 5 2 272 59 328 7.27e-68 214
MsG0280007677.01.T01 MTR_4g074980 42.647 272 124 4 1 272 55 294 4.13e-67 211
MsG0280007677.01.T01 MTR_4g087965 45.055 273 142 6 2 269 74 343 8.75e-67 212
MsG0280007677.01.T01 MTR_3g092990 43.580 257 142 2 17 272 61 315 2.20e-66 210
MsG0280007677.01.T01 MTR_1g025980 41.912 272 149 6 1 271 54 317 4.23e-66 209
MsG0280007677.01.T01 MTR_7g029030 44.280 271 137 5 6 272 60 320 5.68e-66 209
MsG0280007677.01.T01 MTR_4g095450 45.652 276 135 7 1 271 58 323 7.93e-66 209
MsG0280007677.01.T01 MTR_1g077000 42.491 273 142 7 1 272 69 327 8.52e-66 209
MsG0280007677.01.T01 MTR_2g008160 41.818 275 148 6 3 272 56 323 9.03e-66 209
MsG0280007677.01.T01 MTR_2g008730 46.122 245 124 4 32 272 61 301 8.23e-64 203
MsG0280007677.01.T01 MTR_4g127670 43.173 271 143 6 2 268 56 319 6.64e-63 201
MsG0280007677.01.T01 MTR_7g086870 41.241 274 145 6 1 272 52 311 7.72e-63 201
MsG0280007677.01.T01 MTR_0155s0040 39.706 272 151 5 1 272 57 315 9.07e-63 201
MsG0280007677.01.T01 MTR_6g043240 43.929 280 139 8 5 280 76 341 1.23e-62 202
MsG0280007677.01.T01 MTR_6g043280 41.697 271 146 6 5 274 75 334 2.49e-62 200
MsG0280007677.01.T01 MTR_6g043460 43.985 266 136 6 5 268 70 324 6.39e-62 200
MsG0280007677.01.T01 MTR_2g099175 40.217 276 153 6 3 273 68 336 8.31e-62 199
MsG0280007677.01.T01 MTR_6g027440 41.176 272 152 5 1 272 51 314 4.91e-61 196
MsG0280007677.01.T01 MTR_4g132490 39.560 273 158 4 2 272 60 327 6.21e-61 196
MsG0280007677.01.T01 MTR_4g074980 47.317 205 99 2 1 202 55 253 3.90e-60 192
MsG0280007677.01.T01 MTR_5g074860 40.520 269 110 4 3 268 61 282 1.21e-58 189
MsG0280007677.01.T01 MTR_5g033470 40.580 276 155 6 3 272 105 377 1.83e-58 192
MsG0280007677.01.T01 MTR_1g009750 40.146 274 140 6 2 272 59 311 5.74e-58 188
MsG0280007677.01.T01 MTR_2g067440 37.124 299 154 6 1 269 90 384 9.77e-57 187
MsG0280007677.01.T01 MTR_1g090760 39.338 272 160 4 5 273 62 331 1.70e-56 185
MsG0280007677.01.T01 MTR_2g077990 37.542 301 153 6 1 269 106 403 3.09e-56 187
MsG0280007677.01.T01 MTR_2g078610 37.209 301 154 6 1 269 106 403 1.51e-55 185
MsG0280007677.01.T01 MTR_3g105790 40.741 270 152 3 1 268 55 318 1.36e-54 180
MsG0280007677.01.T01 MTR_2g067450 38.662 269 160 4 5 271 44 309 5.13e-52 173
MsG0280007677.01.T01 MTR_2g078280 37.586 290 146 6 1 258 106 392 1.71e-51 174
MsG0280007677.01.T01 MTR_1g066680 36.765 272 161 4 4 272 59 322 3.97e-51 171
MsG0280007677.01.T01 MTR_0286s0010 39.051 274 158 6 3 272 66 334 5.83e-51 171
MsG0280007677.01.T01 MTR_6g008075 39.051 274 158 6 3 272 66 334 5.83e-51 171
MsG0280007677.01.T01 MTR_1g066710 36.397 272 162 4 4 272 60 323 6.12e-51 171
MsG0280007677.01.T01 MTR_4g132110 37.770 278 162 4 4 278 65 334 8.69e-51 171
MsG0280007677.01.T01 MTR_8g062780 37.638 271 161 4 6 272 58 324 1.97e-50 169
MsG0280007677.01.T01 MTR_1g066380 36.765 272 161 4 4 272 60 323 2.14e-50 169
MsG0280007677.01.T01 MTR_1g066640 36.765 272 161 4 4 272 60 323 1.14e-49 167
MsG0280007677.01.T01 MTR_4g132110 37.809 283 160 6 4 278 65 339 2.44e-49 167
MsG0280007677.01.T01 MTR_2g008160 36.364 275 128 6 3 272 56 288 1.20e-48 164
MsG0280007677.01.T01 MTR_0147s0010 36.027 297 137 7 1 269 108 379 2.42e-47 163
MsG0280007677.01.T01 MTR_3g072210 46.277 188 92 3 82 268 55 234 2.90e-47 159
MsG0280007677.01.T01 MTR_1g066380 36.015 261 156 4 15 272 3 255 4.79e-46 156
MsG0280007677.01.T01 MTR_5g074700 40.343 233 114 5 44 273 5 215 2.85e-45 152
MsG0280007677.01.T01 MTR_3g105790 39.662 237 139 2 38 272 12 246 1.63e-42 147
MsG0280007677.01.T01 MTR_7g072490 37.600 250 93 5 16 265 1 187 1.22e-39 138
MsG0280007677.01.T01 MTR_2g008160 49.254 134 64 3 3 136 56 185 9.38e-38 133
MsG0280007677.01.T01 MTR_2g078560 29.646 226 126 4 77 271 96 319 4.02e-28 110
MsG0280007677.01.T01 MTR_3g072260 63.636 77 28 0 3 79 58 134 3.05e-26 101
MsG0280007677.01.T01 MTR_5g058120 39.264 163 86 3 106 268 6 155 4.13e-26 103
MsG0280007677.01.T01 MTR_2g077980 29.137 278 149 10 33 269 11 281 4.63e-25 102
MsG0280007677.01.T01 MTR_7g086790 32.812 192 107 4 18 209 17 186 2.90e-23 94.7
MsG0280007677.01.T01 MTR_2g029930 69.697 66 6 2 3 54 37 102 8.83e-22 88.2
MsG0280007677.01.T01 MTR_6g048160 61.972 71 23 2 10 80 22 88 5.43e-21 85.9
MsG0280007677.01.T01 MTR_3g462850 37.324 142 84 5 135 272 9 149 4.15e-20 85.1
MsG0280007677.01.T01 MTR_4g031040 31.429 175 76 3 30 204 1 131 1.40e-18 80.5
MsG0280007677.01.T01 MTR_1g089005 47.191 89 40 2 1 83 45 132 9.60e-17 76.3
MsG0280007677.01.T01 MTR_4g114220 51.429 70 24 2 5 74 37 96 1.13e-16 75.9
MsG0280007677.01.T01 MTR_1g098320 44.186 86 44 2 193 276 47 130 5.07e-16 73.9
MsG0280007677.01.T01 MTR_3g088160 26.820 261 153 9 5 254 121 354 3.15e-13 69.7
MsG0280007677.01.T01 MTR_3g088160 26.820 261 153 9 5 254 121 354 4.34e-13 69.7
MsG0280007677.01.T01 MTR_5g074770 36.559 93 58 1 179 271 17 108 5.16e-13 64.7
MsG0280007677.01.T01 MTR_7g107500 43.902 82 43 2 191 272 19 97 5.84e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007677.01.T01 AT2G38380 60.364 275 108 1 1 274 61 335 5.81e-122 353
MsG0280007677.01.T01 AT2G38390 58.182 275 114 1 1 274 61 335 2.35e-117 341
MsG0280007677.01.T01 AT4G08770 58.123 277 114 2 1 275 54 330 8.12e-114 332
MsG0280007677.01.T01 AT3G32980 55.518 299 124 3 1 297 61 352 1.86e-113 332
MsG0280007677.01.T01 AT4G08780 57.040 277 117 2 1 275 54 330 2.67e-113 331
MsG0280007677.01.T01 AT3G49120 55.184 299 125 3 1 297 62 353 2.42e-112 329
MsG0280007677.01.T01 AT3G49110 54.849 299 126 3 1 297 63 354 5.42e-112 328
MsG0280007677.01.T01 AT5G06720 58.889 270 111 0 3 272 64 333 3.60e-111 325
MsG0280007677.01.T01 AT5G06730 54.804 281 127 0 3 283 65 345 1.07e-108 320
MsG0280007677.01.T01 AT5G19880 52.536 276 126 4 1 272 55 329 4.66e-97 289
MsG0280007677.01.T01 AT5G66390 51.103 272 132 1 1 272 63 333 5.45e-95 284
MsG0280007677.01.T01 AT2G18140 51.103 272 132 1 1 272 65 335 8.00e-94 281
MsG0280007677.01.T01 AT4G36430 51.103 272 132 1 1 272 60 330 3.65e-93 279
MsG0280007677.01.T01 AT2G18150 50.735 272 133 1 1 272 66 336 4.31e-93 279
MsG0280007677.01.T01 AT1G44970 52.574 272 129 0 1 272 75 346 4.68e-92 277
MsG0280007677.01.T01 AT5G19890 53.650 274 119 4 1 272 60 327 5.99e-92 276
MsG0280007677.01.T01 AT1G14550 50.549 273 127 3 1 272 56 321 1.14e-91 275
MsG0280007677.01.T01 AT5G05340 49.635 274 127 4 1 272 60 324 1.30e-84 257
MsG0280007677.01.T01 AT3G50990 46.520 273 145 1 1 273 71 342 1.76e-83 255
MsG0280007677.01.T01 AT1G49570 47.253 273 139 3 1 270 78 348 3.36e-83 254
MsG0280007677.01.T01 AT1G14540 48.897 272 132 3 1 272 51 315 6.80e-83 253
MsG0280007677.01.T01 AT2G35380 50.000 276 134 3 1 272 60 335 1.84e-82 252
MsG0280007677.01.T01 AT5G58390 49.077 271 126 5 1 268 51 312 2.29e-81 249
MsG0280007677.01.T01 AT4G16270 48.905 274 133 5 1 272 80 348 4.95e-81 249
MsG0280007677.01.T01 AT1G68850 46.182 275 142 6 3 272 62 335 6.19e-79 243
MsG0280007677.01.T01 AT5G64120 48.699 269 128 6 5 272 69 328 9.42e-79 242
MsG0280007677.01.T01 AT5G58400 47.794 272 130 5 1 269 60 322 2.51e-78 241
MsG0280007677.01.T01 AT2G41480 47.273 275 129 6 5 272 63 328 1.67e-76 236
MsG0280007677.01.T01 AT5G17820 44.444 270 138 5 3 272 56 313 2.42e-76 236
MsG0280007677.01.T01 AT2G22420 42.857 280 155 3 3 282 55 329 4.38e-76 236
MsG0280007677.01.T01 AT1G71695 47.350 283 137 6 1 280 74 347 5.34e-76 236
MsG0280007677.01.T01 AT3G03670 44.815 270 146 2 3 272 55 321 1.73e-75 234
MsG0280007677.01.T01 AT5G17820 44.444 270 138 5 3 272 109 366 6.04e-75 234
MsG0280007677.01.T01 AT4G25980 43.321 277 146 5 1 272 56 326 6.40e-75 233
MsG0280007677.01.T01 AT5G64100 46.125 271 133 6 5 272 71 331 1.93e-73 229
MsG0280007677.01.T01 AT1G05260 44.526 274 146 5 1 272 56 325 2.63e-73 228
MsG0280007677.01.T01 AT4G37530 45.091 275 145 4 1 272 58 329 4.57e-73 228
MsG0280007677.01.T01 AT3G21770 44.280 271 145 5 1 269 59 325 7.60e-73 227
MsG0280007677.01.T01 AT1G05240 42.294 279 145 6 1 272 56 325 1.38e-72 226
MsG0280007677.01.T01 AT1G05250 42.294 279 145 6 1 272 56 325 1.38e-72 226
MsG0280007677.01.T01 AT5G64110 46.494 271 134 5 5 272 68 330 2.52e-72 226
MsG0280007677.01.T01 AT2G18980 46.182 275 136 6 2 272 57 323 7.83e-72 224
MsG0280007677.01.T01 AT4G30170 45.091 275 139 6 2 272 59 325 1.03e-71 224
MsG0280007677.01.T01 AT4G11290 44.000 275 148 5 1 272 55 326 3.07e-71 223
MsG0280007677.01.T01 AT4G37520 43.636 275 149 4 1 272 58 329 2.50e-69 218
MsG0280007677.01.T01 AT5G39580 46.468 269 135 6 5 272 59 319 9.97e-69 216
MsG0280007677.01.T01 AT5G15180 41.176 272 156 4 1 272 62 329 2.52e-68 216
MsG0280007677.01.T01 AT4G37520 43.273 275 147 5 1 272 58 326 3.06e-68 215
MsG0280007677.01.T01 AT2G35380 47.773 247 125 3 30 272 1 247 8.51e-67 209
MsG0280007677.01.T01 AT1G30870 43.165 278 141 7 4 276 84 349 9.25e-67 212
MsG0280007677.01.T01 AT5G42180 41.328 271 152 4 1 271 53 316 5.28e-66 209
MsG0280007677.01.T01 AT5G51890 40.659 273 155 5 1 272 56 322 3.70e-65 207
MsG0280007677.01.T01 AT5G67400 42.182 275 153 4 1 272 58 329 4.92e-65 207
MsG0280007677.01.T01 AT3G01190 41.912 272 152 5 1 272 56 321 6.37e-65 207
MsG0280007677.01.T01 AT3G49960 41.455 275 155 4 1 272 58 329 1.04e-64 206
MsG0280007677.01.T01 AT2G43480 41.758 273 146 6 5 272 71 335 5.74e-63 202
MsG0280007677.01.T01 AT4G37530 46.637 223 115 3 1 220 58 279 7.03e-62 197
MsG0280007677.01.T01 AT2G39040 43.728 279 146 7 1 272 76 350 7.07e-62 200
MsG0280007677.01.T01 AT5G14130 42.491 273 149 6 2 272 64 330 9.05e-62 199
MsG0280007677.01.T01 AT4G33420 42.279 272 144 6 1 272 67 325 1.73e-61 198
MsG0280007677.01.T01 AT5G14130 42.491 273 149 6 2 272 105 371 1.92e-61 199
MsG0280007677.01.T01 AT4G33870 35.548 301 154 5 5 269 102 398 2.01e-61 200
MsG0280007677.01.T01 AT4G33420 42.279 272 144 6 1 272 114 372 4.51e-61 198
MsG0280007677.01.T01 AT2G34060 41.971 274 149 7 2 269 74 343 1.13e-59 194
MsG0280007677.01.T01 AT5G24070 39.560 273 152 6 5 272 71 335 2.13e-58 191
MsG0280007677.01.T01 AT4G26010 40.146 274 142 8 3 272 54 309 5.03e-58 189
MsG0280007677.01.T01 AT4G31760 38.989 277 155 4 1 272 59 326 6.37e-58 189
MsG0280007677.01.T01 AT4G26010 40.146 274 142 8 3 272 82 337 7.18e-58 189
MsG0280007677.01.T01 AT5G22410 38.971 272 148 10 4 268 61 321 2.13e-57 187
MsG0280007677.01.T01 AT1G77100 39.051 274 153 6 3 272 56 319 3.66e-56 184
MsG0280007677.01.T01 AT3G28200 40.221 271 154 6 3 272 53 316 4.42e-56 184
MsG0280007677.01.T01 AT5G40150 40.221 271 155 5 3 272 64 328 4.62e-56 184
MsG0280007677.01.T01 AT4G17690 38.686 274 157 5 3 273 58 323 3.09e-54 179
MsG0280007677.01.T01 AT2G24800 39.209 278 146 5 5 272 65 329 3.57e-53 177
MsG0280007677.01.T01 AT1G24110 39.114 271 156 6 6 272 57 322 3.59e-52 174
MsG0280007677.01.T01 AT1G34510 37.638 271 153 6 3 272 54 309 3.38e-50 168
MsG0280007677.01.T01 AT4G21960 37.455 275 157 6 4 273 64 328 4.72e-50 169
MsG0280007677.01.T01 AT3G17070 37.184 277 162 7 2 272 69 339 7.47e-49 166
MsG0280007677.01.T01 AT5G47000 34.799 273 168 5 3 272 65 330 1.26e-47 162
MsG0280007677.01.T01 AT2G37130 36.496 274 162 5 3 272 31 296 2.22e-47 160
MsG0280007677.01.T01 AT2G37130 36.496 274 162 5 3 272 62 327 4.87e-47 160
MsG0280007677.01.T01 AT3G17070 35.338 266 159 8 13 272 18 276 2.42e-40 142
MsG0280007677.01.T01 AT4G25980 48.571 140 68 3 1 140 101 236 5.10e-39 139
MsG0280007677.01.T01 AT5G39580 45.455 176 81 5 5 173 59 226 3.34e-34 125
MsG0280007677.01.T01 AT2G24800 43.382 136 73 1 5 140 65 196 5.11e-27 106
MsG0280007677.01.T01 AT4G32320 30.435 253 128 9 3 253 115 321 2.66e-15 75.5
MsG0280007677.01.T01 AT3G42570 37.037 108 66 2 32 138 43 149 2.96e-14 69.3
MsG0280007677.01.T01 AT1G77490 26.820 261 153 11 5 254 106 339 3.54e-14 72.8
MsG0280007677.01.T01 AT1G77490 26.820 261 153 11 5 254 106 339 5.07e-14 72.4
MsG0280007677.01.T01 AT4G35970 31.429 140 86 3 5 143 33 163 2.87e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAATTCAATGATTAAAA+TGG 0.110406 2:+19005620 MsG0280007677.01.T01:CDS
CCTCTTAAGGAGTTGATATT+TGG 0.123659 2:-19002810 None:intergenic
AAACGCTATAAAATGCAATT+TGG 0.155420 2:-19001987 None:intergenic
ATACAATTCTAATATCATTT+AGG 0.170868 2:+19001843 None:intergenic
TCTAATTTCTCCTTTCTTTC+CGG 0.185886 2:-19005661 None:intergenic
CAACAATCTTCAAGGTAAAA+AGG 0.186367 2:+19005494 MsG0280007677.01.T01:CDS
ATTTCAGGTGCTCATACTTT+TGG 0.211043 2:+19005288 MsG0280007677.01.T01:intron
TACAATTCTAATATCATTTA+GGG 0.255235 2:+19001844 None:intergenic
AGTTCTGAAAGAAAACATTT+TGG 0.283013 2:-19005596 None:intergenic
ATGCAATTTGGGACAAGTTT+TGG 0.283968 2:-19001975 None:intergenic
CCAAATATCAACTCCTTAAG+AGG 0.308669 2:+19002810 MsG0280007677.01.T01:CDS
TGCTGTGTAGTGGTTGTGTT+TGG 0.336469 2:+19001906 MsG0280007677.01.T01:five_prime_UTR
AACGCTATAAAATGCAATTT+GGG 0.339444 2:-19001986 None:intergenic
AATGAGACTGGCAGGCATTC+GGG 0.339771 2:-19002041 None:intergenic
AAAGCTTGTGGCAGAAATAA+AGG 0.359865 2:-19005940 None:intergenic
GGTAATATTGATGTCCTTAC+CGG 0.366993 2:+19005642 MsG0280007677.01.T01:CDS
CCGGTGTTGAGAACAATTCT+TGG 0.387016 2:-19005533 None:intergenic
GGCTGGAATATCTTCTGTTC+TGG 0.391319 2:+19002917 MsG0280007677.01.T01:CDS
TCAGCACAAGAAACTCTATT+AGG 0.391364 2:-19002879 None:intergenic
TCCAATGTATCAGGAGTAGT+TGG 0.392375 2:-19005459 None:intergenic
TTATACAACTTCAACAATAC+TGG 0.396066 2:+19005342 MsG0280007677.01.T01:CDS
TTTAGTTGAAATGTGGTGAT+TGG 0.398883 2:+19005798 MsG0280007677.01.T01:three_prime_UTR
TAATGAGACTGGCAGGCATT+CGG 0.405318 2:-19002042 None:intergenic
GATAACATCTAATCCTCTTA+AGG 0.407011 2:-19002823 None:intergenic
CAATGTCCTCGGAATGGAAC+TGG 0.408408 2:+19005414 MsG0280007677.01.T01:CDS
AAAGAAAAGTGCTAGCTAGC+TGG 0.408477 2:+19005832 MsG0280007677.01.T01:three_prime_UTR
CTTGCCAATCAAAATCTTCC+AGG 0.414340 2:+19003155 MsG0280007677.01.T01:CDS
AAATCTTCCTTTGCTGATCA+AGG 0.415354 2:+19003203 MsG0280007677.01.T01:CDS
ATGAAAATTACATTGAAAGA+AGG 0.419320 2:-19005909 None:intergenic
AACTTCTACAACAATCTTCA+AGG 0.429407 2:+19005486 MsG0280007677.01.T01:CDS
ATAAATTCAATGATTAAAAT+GGG 0.430148 2:+19005621 MsG0280007677.01.T01:CDS
TGGATCAAGTTGTGCATTTG+AGG 0.434931 2:-19001943 None:intergenic
GAATGCCTGCCAGTCTCATT+AGG 0.438956 2:+19002044 MsG0280007677.01.T01:exon
CCCAACTACTCCTGATACAT+TGG 0.443362 2:+19005458 MsG0280007677.01.T01:CDS
AGTTGATCTAAACTGAAGTT+GGG 0.446411 2:-19003179 None:intergenic
TTATAGCGTTTAAAGTCTTA+CGG 0.451305 2:+19001999 MsG0280007677.01.T01:five_prime_UTR
AAGTTGATCTAAACTGAAGT+TGG 0.456582 2:-19003180 None:intergenic
TGTGTAGTGGTTGTGTTTGG+AGG 0.470520 2:+19001909 MsG0280007677.01.T01:five_prime_UTR
GGGAGGTTCCACTAGGAAGA+AGG 0.478431 2:+19003108 MsG0280007677.01.T01:CDS
TTTCTCCTTTCTTTCCGGTA+AGG 0.480374 2:-19005656 None:intergenic
CCTAGTGGAACCTCCCAACC+TGG 0.485044 2:-19003101 None:intergenic
GTTGTATCAAGAGTTGGATC+GGG 0.497486 2:-19005369 None:intergenic
CAATCAAATTAAGACTAAAG+TGG 0.503151 2:+19002845 MsG0280007677.01.T01:CDS
TGTGGCCTCTACAGAATCAA+TGG 0.503705 2:+19005734 MsG0280007677.01.T01:CDS
AAGTATGTTGTATCAAGAGT+TGG 0.504944 2:-19005375 None:intergenic
TGCTGATATTCTTACACTTG+CGG 0.504955 2:+19002896 MsG0280007677.01.T01:CDS
AAGAAAAGTGCTAGCTAGCT+GGG 0.510762 2:+19005833 MsG0280007677.01.T01:three_prime_UTR
CTTACGGAAAGTTGCTAACA+AGG 0.511074 2:+19002015 MsG0280007677.01.T01:five_prime_UTR
GATATTCTTACACTTGCGGC+TGG 0.511248 2:+19002900 MsG0280007677.01.T01:CDS
GATGTCCTTACCGGAAAGAA+AGG 0.513693 2:+19005651 MsG0280007677.01.T01:CDS
TGTTGTATCAAGAGTTGGAT+CGG 0.517053 2:-19005370 None:intergenic
AAGTTGTGCATTTGAGGAGA+AGG 0.526618 2:-19001937 None:intergenic
ATAATCGATCAAGTATGAAA+AGG 0.532029 2:-19005323 None:intergenic
AAAATGAAGCCTAATGAGAC+TGG 0.538497 2:-19002053 None:intergenic
CAGTTCCATTCCGAGGACAT+TGG 0.544295 2:-19005413 None:intergenic
GTTGACCTAGTAGCACTCTC+AGG 0.546771 2:+19003236 MsG0280007677.01.T01:CDS
CAGTTCAATCTAAATGAATG+TGG 0.547571 2:+19005770 MsG0280007677.01.T01:exon
TGAAGCCTAATGAGACTGGC+AGG 0.550706 2:-19002049 None:intergenic
CCAGGTTGGGAGGTTCCACT+AGG 0.552931 2:+19003101 MsG0280007677.01.T01:CDS
AACAGCTTTGTGCTGTGTAG+TGG 0.556984 2:+19001896 MsG0280007677.01.T01:five_prime_UTR
CAAGAATTGTTCTCAACACC+GGG 0.559032 2:+19005534 MsG0280007677.01.T01:CDS
CTCTACAGAATCAATGGAGG+GGG 0.569128 2:+19005740 MsG0280007677.01.T01:CDS
CGAAACCAATGTCCTCGGAA+TGG 0.569149 2:+19005408 MsG0280007677.01.T01:CDS
TCTAAACTGAAGTTGGGACC+TGG 0.569967 2:-19003173 None:intergenic
CCAATGTATCAGGAGTAGTT+GGG 0.573997 2:-19005458 None:intergenic
GCCTCTACAGAATCAATGGA+GGG 0.583397 2:+19005738 MsG0280007677.01.T01:CDS
CCAAGAATTGTTCTCAACAC+CGG 0.585556 2:+19005533 MsG0280007677.01.T01:CDS
AGACTATCCCTTCTTCCTAG+TGG 0.587373 2:-19003116 None:intergenic
GGAGGTTCCACTAGGAAGAA+GGG 0.591374 2:+19003109 MsG0280007677.01.T01:CDS
ATACACCTGAGAGTGCTACT+AGG 0.592051 2:-19003241 None:intergenic
AGTTGTGCATTTGAGGAGAA+GGG 0.593995 2:-19001936 None:intergenic
TGATTCTGTAGAGGCCACAC+TGG 0.596280 2:-19005730 None:intergenic
AGTTCAATCTAAATGAATGT+GGG 0.599780 2:+19005771 MsG0280007677.01.T01:exon
GTTGAGTCCTTGATCAGCAA+AGG 0.604222 2:-19003210 None:intergenic
TGAATCGGATCTTGCCAGTG+TGG 0.604940 2:+19005716 MsG0280007677.01.T01:CDS
AATTGCGAAACCAATGTCCT+CGG 0.607063 2:+19005403 MsG0280007677.01.T01:CDS
GGGTTACTTTAGTTGAAATG+TGG 0.607486 2:+19005791 MsG0280007677.01.T01:three_prime_UTR
ATGCTAATCGTATCTGCACC+CGG 0.609348 2:-19005552 None:intergenic
ATGAGACTGGCAGGCATTCG+GGG 0.612771 2:-19002040 None:intergenic
TTATTTCCAGTTCCATTCCG+AGG 0.620815 2:-19005420 None:intergenic
CCCCTCCATTGATTCTGTAG+AGG 0.622006 2:-19005739 None:intergenic
TGCTGATCAAGGACTCAACA+CGG 0.632871 2:+19003214 MsG0280007677.01.T01:CDS
CCTCTACAGAATCAATGGAG+GGG 0.644153 2:+19005739 MsG0280007677.01.T01:CDS
ACAATTCTAATATCATTTAG+GGG 0.646973 2:+19001845 None:intergenic
CACACACACAGCAAAGCTTG+TGG 0.654921 2:-19005952 None:intergenic
GGCCTCTACAGAATCAATGG+AGG 0.661561 2:+19005737 MsG0280007677.01.T01:CDS
GATCTATTTCCACAGACTGG+GGG 0.672586 2:+19003077 MsG0280007677.01.T01:intron
TAGTTGGGTCGAAATTGACA+CGG 0.696351 2:-19005443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAAATTAACAAGAA+AGG - Chr2:19002431-19002450 None:intergenic 10.0%
!! ATAAATTCAATGATTAAAAT+GGG + Chr2:19005621-19005640 MsG0280007677.01.T01:CDS 10.0%
!! TATAAATTCAATGATTAAAA+TGG + Chr2:19005620-19005639 MsG0280007677.01.T01:CDS 10.0%
!!! AATTTTCAACATAATTTTAA+TGG + Chr2:19002489-19002508 MsG0280007677.01.T01:intron 10.0%
!!! ATATTTTGAAAAATACTTTA+TGG + Chr2:19002165-19002184 MsG0280007677.01.T01:intron 10.0%
!! AAATTTATTCTCTTTCTTTA+AGG + Chr2:19002622-19002641 MsG0280007677.01.T01:intron 15.0%
!! AATTTATTCTCTTTCTTTAA+GGG + Chr2:19002623-19002642 MsG0280007677.01.T01:intron 15.0%
!! ATATTATTTATGATTGAAAC+AGG + Chr2:19002725-19002744 MsG0280007677.01.T01:intron 15.0%
!! ATTAAAACTTAAAATTGTTG+AGG + Chr2:19003411-19003430 MsG0280007677.01.T01:intron 15.0%
!! TATTATCTAAATATCATTGT+TGG - Chr2:19003326-19003345 None:intergenic 15.0%
!! TATTATTTATGATTGAAACA+GGG + Chr2:19002726-19002745 MsG0280007677.01.T01:intron 15.0%
!! TTCAATTTCGTTATATAATT+AGG + Chr2:19003992-19004011 MsG0280007677.01.T01:intron 15.0%
!! TTTATTAGAACAATTCAATT+AGG + Chr2:19004361-19004380 MsG0280007677.01.T01:intron 15.0%
!!! ACTAAAATTTACCTATTTTT+CGG - Chr2:19003729-19003748 None:intergenic 15.0%
!!! ATGACATTAATCTTTTTTAT+TGG - Chr2:19003584-19003603 None:intergenic 15.0%
!! ATGAAAATTACATTGAAAGA+AGG - Chr2:19005912-19005931 None:intergenic 20.0%
!! ATTGAATTGTTCTAATAAAC+AGG - Chr2:19004360-19004379 None:intergenic 20.0%
!! TAATCAAAACATACATGAAT+TGG + Chr2:19004621-19004640 MsG0280007677.01.T01:intron 20.0%
!! TGGTTATGATAAAAAATTCA+TGG - Chr2:19003352-19003371 None:intergenic 20.0%
!! TGTAGATAACATTTAGAAAA+TGG - Chr2:19003282-19003301 None:intergenic 20.0%
!! TTGAATTGTTCTAATAAACA+GGG - Chr2:19004359-19004378 None:intergenic 20.0%
!!! AAGATTTTCTCTAAAAACAT+AGG - Chr2:19003854-19003873 None:intergenic 20.0%
!!! ACTTCCTTGTTATTATTTTT+TGG + Chr2:19002323-19002342 MsG0280007677.01.T01:intron 20.0%
!!! TAACAAGAAATCTTTTGAAT+CGG + Chr2:19005701-19005720 MsG0280007677.01.T01:CDS 20.0%
!!! TCAAGTTATTATTTTTCACT+AGG + Chr2:19002548-19002567 MsG0280007677.01.T01:intron 20.0%
!!! TGATAATGAAAATTAGTCAA+TGG + Chr2:19002577-19002596 MsG0280007677.01.T01:intron 20.0%
! AAACGCTATAAAATGCAATT+TGG - Chr2:19001990-19002009 None:intergenic 25.0%
! AACAATCTTCAAGGTAAAAA+GGG + Chr2:19005495-19005514 MsG0280007677.01.T01:CDS 25.0%
! AACATACATGAATTGGTAAA+AGG + Chr2:19004628-19004647 MsG0280007677.01.T01:intron 25.0%
! AACGCTATAAAATGCAATTT+GGG - Chr2:19001989-19002008 None:intergenic 25.0%
! ACTAACTAACAATATACGTA+GGG + Chr2:19002361-19002380 MsG0280007677.01.T01:intron 25.0%
! AGAGCCAAAAAATAATAACA+AGG - Chr2:19002330-19002349 None:intergenic 25.0%
! AGTTCAATCTAAATGAATGT+GGG + Chr2:19005771-19005790 MsG0280007677.01.T01:exon 25.0%
! ATAATCGATCAAGTATGAAA+AGG - Chr2:19005326-19005345 None:intergenic 25.0%
! CAAATATATATAGCACATGA+TGG + Chr2:19005241-19005260 MsG0280007677.01.T01:intron 25.0%
! CAATCAAATTAAGACTAAAG+TGG + Chr2:19002845-19002864 MsG0280007677.01.T01:CDS 25.0%
! CATAACCAAGATTTCAAATT+TGG + Chr2:19003364-19003383 MsG0280007677.01.T01:intron 25.0%
! CTAACAAATACATAACTTGA+GGG - Chr2:19002144-19002163 None:intergenic 25.0%
! GTTGATTGAATTCGAATTAT+CGG + Chr2:19002279-19002298 MsG0280007677.01.T01:intron 25.0%
! TAACAAATACATAACTTGAG+GGG - Chr2:19002143-19002162 None:intergenic 25.0%
! TTATACAACTTCAACAATAC+TGG + Chr2:19005342-19005361 MsG0280007677.01.T01:CDS 25.0%
! TTCATTTCCCTATAAATCTA+CGG - Chr2:19003692-19003711 None:intergenic 25.0%
! TTTACTACTTCGATAGTATT+TGG - Chr2:19003934-19003953 None:intergenic 25.0%
!! AATCGTTTGTTAGTGATAAT+AGG - Chr2:19004319-19004338 None:intergenic 25.0%
!! AATTCAATCAACTCCTTTTA+TGG - Chr2:19002271-19002290 None:intergenic 25.0%
!! CATATCCAAATTTGAAATCT+TGG - Chr2:19003372-19003391 None:intergenic 25.0%
!! GCAATGACACTATTAATTTT+TGG - Chr2:19002464-19002483 None:intergenic 25.0%
!! TGTATGTAGTTTTTGTCTTT+TGG + Chr2:19002680-19002699 MsG0280007677.01.T01:intron 25.0%
!! TTATAGCGTTTAAAGTCTTA+CGG + Chr2:19001999-19002018 MsG0280007677.01.T01:five_prime_UTR 25.0%
!!! ACAAGTTTTGGTGTAAAATA+TGG - Chr2:19001966-19001985 None:intergenic 25.0%
!!! AGTTCTGAAAGAAAACATTT+TGG - Chr2:19005599-19005618 None:intergenic 25.0%
!!! TAAAAGCACTTGTTATCATT+TGG + Chr2:19003793-19003812 MsG0280007677.01.T01:intron 25.0%
!!! TTGTCTTTATTTTTCAGATG+TGG - Chr2:19002192-19002211 None:intergenic 25.0%
!!! TTTATTTTTAGTTTGCCACT+AGG + Chr2:19004025-19004044 MsG0280007677.01.T01:intron 25.0%
!!! TTTTTAGAGAAAATCTTGTG+TGG + Chr2:19003857-19003876 MsG0280007677.01.T01:intron 25.0%
AAACTAAAATTCTTTGGTCC+TGG + Chr2:19005100-19005119 MsG0280007677.01.T01:intron 30.0%
AAAGTAACCCACATTCATTT+AGG - Chr2:19003755-19003774 None:intergenic 30.0%
AAATATTGAAGTCTGTTCGA+AGG - Chr2:19004888-19004907 None:intergenic 30.0%
AACTTCTACAACAATCTTCA+AGG + Chr2:19005486-19005505 MsG0280007677.01.T01:CDS 30.0%
AAGAATTATTAGACCACCTA+AGG - Chr2:19004275-19004294 None:intergenic 30.0%
AAGTATGTTGTATCAAGAGT+TGG - Chr2:19005378-19005397 None:intergenic 30.0%
AAGTTAAAAACAGTTCTCGT+GGG - Chr2:19003966-19003985 None:intergenic 30.0%
AATCATCGTAAACTAGAAGA+GGG - Chr2:19004189-19004208 None:intergenic 30.0%
AGTGATAATAGGTTAACGTT+CGG - Chr2:19004308-19004327 None:intergenic 30.0%
AGTTGATCTAAACTGAAGTT+GGG - Chr2:19003182-19003201 None:intergenic 30.0%
CAACAATCTTCAAGGTAAAA+AGG + Chr2:19005494-19005513 MsG0280007677.01.T01:CDS 30.0%
CACTAACTAACAATATACGT+AGG + Chr2:19002360-19002379 MsG0280007677.01.T01:intron 30.0%
CAGTTCAATCTAAATGAATG+TGG + Chr2:19005770-19005789 MsG0280007677.01.T01:exon 30.0%
CATTGCTTAATAAGTAGACA+AGG + Chr2:19003645-19003664 MsG0280007677.01.T01:intron 30.0%
CCTGTCATTACGTAATATTA+GGG - Chr2:19004975-19004994 None:intergenic 30.0%
GATAACATCTAATCCTCTTA+AGG - Chr2:19002826-19002845 None:intergenic 30.0%
GCAGTATTTATAGAAGTCAT+GGG + Chr2:19004739-19004758 MsG0280007677.01.T01:intron 30.0%
GCTAACAAATACATAACTTG+AGG - Chr2:19002145-19002164 None:intergenic 30.0%
GTGACCAAACTAAAATTCTT+TGG + Chr2:19005094-19005113 MsG0280007677.01.T01:intron 30.0%
TAATCATCGTAAACTAGAAG+AGG - Chr2:19004190-19004209 None:intergenic 30.0%
TACGTAAACGTAACCATAAA+AGG + Chr2:19002255-19002274 MsG0280007677.01.T01:intron 30.0%
TACTAAACTGCTTCAATTTC+AGG + Chr2:19005273-19005292 MsG0280007677.01.T01:intron 30.0%
TAGTCAACCTAAATGAATGT+GGG + Chr2:19003745-19003764 MsG0280007677.01.T01:intron 30.0%
TCATGCAATTTATACTGTTC+TGG - Chr2:19004925-19004944 None:intergenic 30.0%
TCCTGTCATTACGTAATATT+AGG - Chr2:19004976-19004995 None:intergenic 30.0%
TCCTTAACCGTAGATTTATA+GGG + Chr2:19003682-19003701 MsG0280007677.01.T01:intron 30.0%
TCTAATTTCTCCTTTCTTTC+CGG - Chr2:19005664-19005683 None:intergenic 30.0%
TGCAGTATTTATAGAAGTCA+TGG + Chr2:19004738-19004757 MsG0280007677.01.T01:intron 30.0%
TTAGTCAACCTAAATGAATG+TGG + Chr2:19003744-19003763 MsG0280007677.01.T01:intron 30.0%
TTTAGTTGAAATGTGGTGAT+TGG + Chr2:19005798-19005817 MsG0280007677.01.T01:three_prime_UTR 30.0%
! AAGAACAAAGGTTACGATTT+TGG - Chr2:19004709-19004728 None:intergenic 30.0%
! AAGTTGATCTAAACTGAAGT+TGG - Chr2:19003183-19003202 None:intergenic 30.0%
! AAGTTTTTGTCCAATGTATC+AGG - Chr2:19005471-19005490 None:intergenic 30.0%
! TGAATGTGGGTTACTTTATT+AGG + Chr2:19003758-19003777 MsG0280007677.01.T01:intron 30.0%
! TTGACTTGATGAATAGTCTA+TGG + Chr2:19003450-19003469 MsG0280007677.01.T01:intron 30.0%
!! AGTTTTATATTTAGTACCGG+AGG + Chr2:19005177-19005196 MsG0280007677.01.T01:intron 30.0%
!! GCGAGTTTTATATTTAGTAC+CGG + Chr2:19005174-19005193 MsG0280007677.01.T01:intron 30.0%
!!! AGGACCAAAGAATTTTAGTT+TGG - Chr2:19005101-19005120 None:intergenic 30.0%
AAAATGAAGCCTAATGAGAC+TGG - Chr2:19002056-19002075 None:intergenic 35.0%
AAACATGAGAAACACTTGTG+TGG - Chr2:19005127-19005146 None:intergenic 35.0%
AAACCAAATATTCTGCCTAG+TGG - Chr2:19004043-19004062 None:intergenic 35.0%
AAAGCTTGTGGCAGAAATAA+AGG - Chr2:19005943-19005962 None:intergenic 35.0%
AAATCTTCCTTTGCTGATCA+AGG + Chr2:19003203-19003222 MsG0280007677.01.T01:CDS 35.0%
AATCGTAACCTTTGTTCTTC+AGG + Chr2:19004710-19004729 MsG0280007677.01.T01:intron 35.0%
ACTAACAATATACGTAGGGT+TGG + Chr2:19002365-19002384 MsG0280007677.01.T01:intron 35.0%
AGGGTTACAAAGATTCATCT+CGG + Chr2:19004536-19004555 MsG0280007677.01.T01:intron 35.0%
ATGAATAGTCTATGGAGATG+TGG + Chr2:19003458-19003477 MsG0280007677.01.T01:intron 35.0%
ATTAGACCACCTAAGGAATT+AGG - Chr2:19004268-19004287 None:intergenic 35.0%
CCAAATATCAACTCCTTAAG+AGG + Chr2:19002810-19002829 MsG0280007677.01.T01:CDS 35.0%
CCCTAATATTACGTAATGAC+AGG + Chr2:19004972-19004991 MsG0280007677.01.T01:intron 35.0%
CTAACTCAAGGGATTGATTA+GGG - Chr2:19004222-19004241 None:intergenic 35.0%
CTCCTTAACCGTAGATTTAT+AGG + Chr2:19003681-19003700 MsG0280007677.01.T01:intron 35.0%
GAAGAGGGTTCATAACAAAT+AGG - Chr2:19004174-19004193 None:intergenic 35.0%
GAAGTTAAAAACAGTTCTCG+TGG - Chr2:19003967-19003986 None:intergenic 35.0%
GGTAATATTGATGTCCTTAC+CGG + Chr2:19005642-19005661 MsG0280007677.01.T01:CDS 35.0%
GGTGGTCTAATAATTCTTGA+AGG + Chr2:19004277-19004296 MsG0280007677.01.T01:intron 35.0%
GTGTTGCAAATGTTTGTCTA+GGG - Chr2:19005216-19005235 None:intergenic 35.0%
TAGGTCTAAGTTAAAAGCCA+TGG + Chr2:19004380-19004399 MsG0280007677.01.T01:intron 35.0%
TCAGCACAAGAAACTCTATT+AGG - Chr2:19002882-19002901 None:intergenic 35.0%
TCCCTATAAATCTACGGTTA+AGG - Chr2:19003686-19003705 None:intergenic 35.0%
TGAATAGTCTATGGAGATGT+GGG + Chr2:19003459-19003478 MsG0280007677.01.T01:intron 35.0%
TGCTGATATTCTTACACTTG+CGG + Chr2:19002896-19002915 MsG0280007677.01.T01:CDS 35.0%
TGTGTTGCAAATGTTTGTCT+AGG - Chr2:19005217-19005236 None:intergenic 35.0%
TGTTGTATCAAGAGTTGGAT+CGG - Chr2:19005373-19005392 None:intergenic 35.0%
TTAGACCACCTAAGGAATTA+GGG - Chr2:19004267-19004286 None:intergenic 35.0%
! GGGTTACTTTAGTTGAAATG+TGG + Chr2:19005791-19005810 MsG0280007677.01.T01:three_prime_UTR 35.0%
!! ATGCAATTTGGGACAAGTTT+TGG - Chr2:19001978-19001997 None:intergenic 35.0%
!! ATTTCAGGTGCTCATACTTT+TGG + Chr2:19005288-19005307 MsG0280007677.01.T01:intron 35.0%
!! CCTCTTAAGGAGTTGATATT+TGG - Chr2:19002813-19002832 None:intergenic 35.0%
!! CTAATAAACAGGGTTAGTCT+AGG - Chr2:19004349-19004368 None:intergenic 35.0%
!! TATTTTTCGGTCACTTCTGA+GGG - Chr2:19003716-19003735 None:intergenic 35.0%
!! TTTCAGGTGCTCATACTTTT+GGG + Chr2:19005289-19005308 MsG0280007677.01.T01:intron 35.0%
!!! TGGAAGATTTTGATTGGCAA+GGG - Chr2:19003156-19003175 None:intergenic 35.0%
AAGTTAAAAGCCATGGTCAG+TGG + Chr2:19004387-19004406 MsG0280007677.01.T01:intron 40.0%
AAGTTGTGCATTTGAGGAGA+AGG - Chr2:19001940-19001959 None:intergenic 40.0%
AATTGCGAAACCAATGTCCT+CGG + Chr2:19005403-19005422 MsG0280007677.01.T01:CDS 40.0%
ACAGCAACATGCGTCAATTA+GGG + Chr2:19004517-19004536 MsG0280007677.01.T01:intron 40.0%
AGTTGTGCATTTGAGGAGAA+GGG - Chr2:19001939-19001958 None:intergenic 40.0%
ATAGGTGCAGTAGACCAATT+AGG - Chr2:19004156-19004175 None:intergenic 40.0%
ATCCTCTAAGTTCCCCTAAT+TGG + Chr2:19004139-19004158 MsG0280007677.01.T01:intron 40.0%
ATCGATCTATTTCCACAGAC+TGG + Chr2:19003074-19003093 MsG0280007677.01.T01:intron 40.0%
CAAGAAAGGACCTAGAACAA+AGG - Chr2:19002417-19002436 None:intergenic 40.0%
CAAGAATTGTTCTCAACACC+GGG + Chr2:19005534-19005553 MsG0280007677.01.T01:CDS 40.0%
CAGGTCACACAAAGAGAAAA+AGG + Chr2:19005002-19005021 MsG0280007677.01.T01:intron 40.0%
CCAAGAATTGTTCTCAACAC+CGG + Chr2:19005533-19005552 MsG0280007677.01.T01:CDS 40.0%
CCAATGTATCAGGAGTAGTT+GGG - Chr2:19005461-19005480 None:intergenic 40.0%
CCTAACTCAAGGGATTGATT+AGG - Chr2:19004223-19004242 None:intergenic 40.0%
CCTAATCAATCCCTTGAGTT+AGG + Chr2:19004220-19004239 MsG0280007677.01.T01:intron 40.0%
CGTACTGAAACCTTTGTTCT+AGG + Chr2:19002404-19002423 MsG0280007677.01.T01:intron 40.0%
CTCAGAAGTGACCGAAAAAT+AGG + Chr2:19003715-19003734 MsG0280007677.01.T01:intron 40.0%
CTTACGGAAAGTTGCTAACA+AGG + Chr2:19002015-19002034 MsG0280007677.01.T01:five_prime_UTR 40.0%
CTTGCCAATCAAAATCTTCC+AGG + Chr2:19003155-19003174 MsG0280007677.01.T01:CDS 40.0%
CTTTGGTCGTGATAGAAGTT+TGG + Chr2:19003900-19003919 MsG0280007677.01.T01:intron 40.0%
GAGAGAAGAGAATAGAGAGA+AGG + Chr2:19005056-19005075 MsG0280007677.01.T01:intron 40.0%
GAGAGAGAAGAGAGAGAAAA+TGG + Chr2:19005029-19005048 MsG0280007677.01.T01:intron 40.0%
GCACTAATCCTGAAGAACAA+AGG - Chr2:19004721-19004740 None:intergenic 40.0%
GGGACAACAATTAATACCTC+CGG - Chr2:19005196-19005215 None:intergenic 40.0%
GTTGTATCAAGAGTTGGATC+GGG - Chr2:19005372-19005391 None:intergenic 40.0%
TAGACCACCTAAGGAATTAG+GGG - Chr2:19004266-19004285 None:intergenic 40.0%
TAGGTGCAGTAGACCAATTA+GGG - Chr2:19004155-19004174 None:intergenic 40.0%
TAGTTGGGTCGAAATTGACA+CGG - Chr2:19005446-19005465 None:intergenic 40.0%
TCCAATGTATCAGGAGTAGT+TGG - Chr2:19005462-19005481 None:intergenic 40.0%
TCGATCTATTTCCACAGACT+GGG + Chr2:19003075-19003094 MsG0280007677.01.T01:intron 40.0%
TTATTTCCAGTTCCATTCCG+AGG - Chr2:19005423-19005442 None:intergenic 40.0%
TTGCCACTAGGCAGAATATT+TGG + Chr2:19004037-19004056 MsG0280007677.01.T01:intron 40.0%
TTGCTTCAAAAATCGCAGCA+CGG + Chr2:19004838-19004857 MsG0280007677.01.T01:intron 40.0%
TTTCTCCTTTCTTTCCGGTA+AGG - Chr2:19005659-19005678 None:intergenic 40.0%
! TGGATCAAGTTGTGCATTTG+AGG - Chr2:19001946-19001965 None:intergenic 40.0%
!! AAAGAAAAGTGCTAGCTAGC+TGG + Chr2:19005832-19005851 MsG0280007677.01.T01:three_prime_UTR 40.0%
!! AAGAAAAGTGCTAGCTAGCT+GGG + Chr2:19005833-19005852 MsG0280007677.01.T01:three_prime_UTR 40.0%
!! CTATTTTTCGGTCACTTCTG+AGG - Chr2:19003717-19003736 None:intergenic 40.0%
!!! CGATTTTGAGACATCAGAGA+CGG - Chr2:19004675-19004694 None:intergenic 40.0%
!!! CTGGAAGATTTTGATTGGCA+AGG - Chr2:19003157-19003176 None:intergenic 40.0%
AAGAAGAGGGTCCTAACTCA+AGG - Chr2:19004234-19004253 None:intergenic 45.0%
AATTACATCCTCCCTGTCTG+AGG - Chr2:19004817-19004836 None:intergenic 45.0%
ACTACAGCCCCTAATTCCTT+AGG + Chr2:19004256-19004275 MsG0280007677.01.T01:intron 45.0%
AGAAGAGGGTCCTAACTCAA+GGG - Chr2:19004233-19004252 None:intergenic 45.0%
AGAATCAATGGAGGGGGATA+TGG + Chr2:19005746-19005765 MsG0280007677.01.T01:CDS 45.0%
AGACTATCCCTTCTTCCTAG+TGG - Chr2:19003119-19003138 None:intergenic 45.0%
AGGGGCTGTAGTTTAAGAAG+AGG - Chr2:19004248-19004267 None:intergenic 45.0%
AGGTGCAGTAGACCAATTAG+GGG - Chr2:19004154-19004173 None:intergenic 45.0%
ATGCTAATCGTATCTGCACC+CGG - Chr2:19005555-19005574 None:intergenic 45.0%
ATTACATCCTCCCTGTCTGA+GGG - Chr2:19004816-19004835 None:intergenic 45.0%
CACAGCAACATGCGTCAATT+AGG + Chr2:19004516-19004535 MsG0280007677.01.T01:intron 45.0%
CCCAACTACTCCTGATACAT+TGG + Chr2:19005458-19005477 MsG0280007677.01.T01:CDS 45.0%
CCTCTACAGAATCAATGGAG+GGG + Chr2:19005739-19005758 MsG0280007677.01.T01:CDS 45.0%
CGATCTATTTCCACAGACTG+GGG + Chr2:19003076-19003095 MsG0280007677.01.T01:intron 45.0%
CGTAATGACAGGATGTCATC+AGG + Chr2:19004983-19005002 MsG0280007677.01.T01:intron 45.0%
CTCTACAGAATCAATGGAGG+GGG + Chr2:19005740-19005759 MsG0280007677.01.T01:CDS 45.0%
GACCAATTAGGGGAACTTAG+AGG - Chr2:19004144-19004163 None:intergenic 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + Chr2:19003863-19003882 MsG0280007677.01.T01:intron 45.0%
GATATTCTTACACTTGCGGC+TGG + Chr2:19002900-19002919 MsG0280007677.01.T01:CDS 45.0%
GATCTATTTCCACAGACTGG+GGG + Chr2:19003077-19003096 MsG0280007677.01.T01:intron 45.0%
GATGTCCTTACCGGAAAGAA+AGG + Chr2:19005651-19005670 MsG0280007677.01.T01:CDS 45.0%
GCCTCTACAGAATCAATGGA+GGG + Chr2:19005738-19005757 MsG0280007677.01.T01:CDS 45.0%
GGCTGGAATATCTTCTGTTC+TGG + Chr2:19002917-19002936 MsG0280007677.01.T01:CDS 45.0%
GGGGCTGTAGTTTAAGAAGA+GGG - Chr2:19004247-19004266 None:intergenic 45.0%
GTTGAGTCCTTGATCAGCAA+AGG - Chr2:19003213-19003232 None:intergenic 45.0%
TAATGAGACTGGCAGGCATT+CGG - Chr2:19002045-19002064 None:intergenic 45.0%
TCTAAACTGAAGTTGGGACC+TGG - Chr2:19003176-19003195 None:intergenic 45.0%
TGCTGATCAAGGACTCAACA+CGG + Chr2:19003214-19003233 MsG0280007677.01.T01:CDS 45.0%
TGCTGTGTAGTGGTTGTGTT+TGG + Chr2:19001906-19001925 MsG0280007677.01.T01:five_prime_UTR 45.0%
TGTGGCCTCTACAGAATCAA+TGG + Chr2:19005734-19005753 MsG0280007677.01.T01:CDS 45.0%
TGTGTAGTGGTTGTGTTTGG+AGG + Chr2:19001909-19001928 MsG0280007677.01.T01:five_prime_UTR 45.0%
! AACAGCTTTGTGCTGTGTAG+TGG + Chr2:19001896-19001915 MsG0280007677.01.T01:five_prime_UTR 45.0%
! CCGGTGTTGAGAACAATTCT+TGG - Chr2:19005536-19005555 None:intergenic 45.0%
!! ATACACCTGAGAGTGCTACT+AGG - Chr2:19003244-19003263 None:intergenic 45.0%
!! GGGACCTGGAAGATTTTGAT+TGG - Chr2:19003162-19003181 None:intergenic 45.0%
!! TATACGTAGGGTTGGTCGAA+AGG + Chr2:19002373-19002392 MsG0280007677.01.T01:intron 45.0%
!! AAAAAAATATATATTTGTAT+AGG - Chr2:19002968-19002987 None:intergenic 5.0%
!!! TACAAATATATATTTTTTTT+TGG + Chr2:19002969-19002988 MsG0280007677.01.T01:intron 5.0%
!!! TTTAAGTTTTAATAATAATA+TGG - Chr2:19003404-19003423 None:intergenic 5.0%
AAAGACCACTTGTGTGGACC+AGG - Chr2:19003884-19003903 None:intergenic 50.0%
AATGAGACTGGCAGGCATTC+GGG - Chr2:19002044-19002063 None:intergenic 50.0%
ACAGCCCCTAATTCCTTAGG+TGG + Chr2:19004259-19004278 MsG0280007677.01.T01:intron 50.0%
ACGACCAAAGACCACTTGTG+TGG - Chr2:19003890-19003909 None:intergenic 50.0%
AGACATCAGAGACGGCTAGA+AGG - Chr2:19004667-19004686 None:intergenic 50.0%
ATCGCAGCACGGCTTGAAAT+TGG + Chr2:19004849-19004868 MsG0280007677.01.T01:intron 50.0%
CAATGTCCTCGGAATGGAAC+TGG + Chr2:19005414-19005433 MsG0280007677.01.T01:CDS 50.0%
CACACACACAGCAAAGCTTG+TGG - Chr2:19005955-19005974 None:intergenic 50.0%
CAGTTCCATTCCGAGGACAT+TGG - Chr2:19005416-19005435 None:intergenic 50.0%
CGAAACCAATGTCCTCGGAA+TGG + Chr2:19005408-19005427 MsG0280007677.01.T01:CDS 50.0%
GAACGAATGACCACTGACCA+TGG - Chr2:19004400-19004419 None:intergenic 50.0%
GAATGCCTGCCAGTCTCATT+AGG + Chr2:19002044-19002063 MsG0280007677.01.T01:exon 50.0%
GACATCAGAGACGGCTAGAA+GGG - Chr2:19004666-19004685 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG - Chr2:19005121-19005140 None:intergenic 50.0%
GGAGGTTCCACTAGGAAGAA+GGG + Chr2:19003109-19003128 MsG0280007677.01.T01:CDS 50.0%
GGCCTCTACAGAATCAATGG+AGG + Chr2:19005737-19005756 MsG0280007677.01.T01:CDS 50.0%
GGGGAACTTAGAGGATTCGA+CGG - Chr2:19004135-19004154 None:intergenic 50.0%
GTTGACCTAGTAGCACTCTC+AGG + Chr2:19003236-19003255 MsG0280007677.01.T01:CDS 50.0%
TGAAGCCTAATGAGACTGGC+AGG - Chr2:19002052-19002071 None:intergenic 50.0%
TGAATCGGATCTTGCCAGTG+TGG + Chr2:19005716-19005735 MsG0280007677.01.T01:CDS 50.0%
TGATTCTGTAGAGGCCACAC+TGG - Chr2:19005733-19005752 None:intergenic 50.0%
TGGTCCACACAAGTGGTCTT+TGG + Chr2:19003883-19003902 MsG0280007677.01.T01:intron 50.0%
!! CCCCTCCATTGATTCTGTAG+AGG - Chr2:19005742-19005761 None:intergenic 50.0%
AGCACGGCTTGAAATTGGCG+TGG + Chr2:19004854-19004873 MsG0280007677.01.T01:intron 55.0%
ATGAGACTGGCAGGCATTCG+GGG - Chr2:19002043-19002062 None:intergenic 55.0%
GCACGCCATTATACAAGGCG+CGG - Chr2:19004785-19004804 None:intergenic 55.0%
GGGAGGTTCCACTAGGAAGA+AGG + Chr2:19003108-19003127 MsG0280007677.01.T01:CDS 55.0%
TCCCTGTCTGAGGGAAATCG+CGG - Chr2:19004807-19004826 None:intergenic 55.0%
TCGCGGCACGCCATTATACA+AGG - Chr2:19004790-19004809 None:intergenic 55.0%
ACAGACTGGGGGTCCAGGTT+GGG + Chr2:19003088-19003107 MsG0280007677.01.T01:intron 60.0%
CCTAGTGGAACCTCCCAACC+TGG - Chr2:19003104-19003123 None:intergenic 60.0%
GCCGCGATTTCCCTCAGACA+GGG + Chr2:19004803-19004822 MsG0280007677.01.T01:intron 60.0%
GCGATTTCCCTCAGACAGGG+AGG + Chr2:19004806-19004825 MsG0280007677.01.T01:intron 60.0%
GTGGTCCTGGTCCACACAAG+TGG + Chr2:19003876-19003895 MsG0280007677.01.T01:intron 60.0%
TCGCGCCGCGCCTTGTATAA+TGG + Chr2:19004777-19004796 MsG0280007677.01.T01:intron 60.0%
TGCCGCGATTTCCCTCAGAC+AGG + Chr2:19004802-19004821 MsG0280007677.01.T01:intron 60.0%
TTTCCACAGACTGGGGGTCC+AGG + Chr2:19003083-19003102 MsG0280007677.01.T01:intron 60.0%
! AAGGCGCGGCGCGATTTTGA+TGG - Chr2:19004771-19004790 None:intergenic 60.0%
! CCAGGTTGGGAGGTTCCACT+AGG + Chr2:19003101-19003120 MsG0280007677.01.T01:CDS 60.0%
!! AGGCGCGGCGCGATTTTGAT+GGG - Chr2:19004770-19004789 None:intergenic 60.0%
!! CGGCGCGATTTTGATGGGTC+AGG - Chr2:19004765-19004784 None:intergenic 60.0%
CAACCTGGACCCCCAGTCTG+TGG - Chr2:19003089-19003108 None:intergenic 65.0%
CACAGACTGGGGGTCCAGGT+TGG + Chr2:19003087-19003106 MsG0280007677.01.T01:intron 65.0%
! GACTGGGGGTCCAGGTTGGG+AGG + Chr2:19003091-19003110 MsG0280007677.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 19001853 19006051 19001853 ID=MsG0280007677.01;Name=MsG0280007677.01
Chr2 mRNA 19001853 19006051 19001853 ID=MsG0280007677.01.T01;Parent=MsG0280007677.01;Name=MsG0280007677.01.T01;_AED=0.48;_eAED=0.48;_QI=193|1|1|1|1|1|4|269|297
Chr2 exon 19001853 19002093 19001853 ID=MsG0280007677.01.T01:exon:10086;Parent=MsG0280007677.01.T01
Chr2 exon 19002747 19002938 19002747 ID=MsG0280007677.01.T01:exon:10087;Parent=MsG0280007677.01.T01
Chr2 exon 19003092 19003257 19003092 ID=MsG0280007677.01.T01:exon:10088;Parent=MsG0280007677.01.T01
Chr2 exon 19005295 19006051 19005295 ID=MsG0280007677.01.T01:exon:10089;Parent=MsG0280007677.01.T01
Chr2 five_prime_UTR 19001853 19002045 19001853 ID=MsG0280007677.01.T01:five_prime_utr;Parent=MsG0280007677.01.T01
Chr2 CDS 19002046 19002093 19002046 ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2 CDS 19002747 19002938 19002747 ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2 CDS 19003092 19003257 19003092 ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2 CDS 19005295 19005782 19005295 ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2 three_prime_UTR 19005783 19006051 19005783 ID=MsG0280007677.01.T01:three_prime_utr;Parent=MsG0280007677.01.T01
Gene Sequence

>MsG0280007677.01.T01

ATGCCTGCCAGTCTCATTAGGCTTCATTTTCATGATTGTTTCGTTCAAGGTTGTGATGCATCAGTTTTGTTGAATAACACTGCAACTATTGTGAGTGAACAAGATGCTTTTCCAAATATCAACTCCTTAAGAGGATTAGATGTTATCAATCAAATTAAGACTAAAGTGGAAAAAGCTTGTCCTAATAGAGTTTCTTGTGCTGATATTCTTACACTTGCGGCTGGAATATCTTCTGTTCTGACTGGGGGTCCAGGTTGGGAGGTTCCACTAGGAAGAAGGGATAGTCTAACAGCAAATCAATCCCTTGCCAATCAAAATCTTCCAGGTCCCAACTTCAGTTTAGATCAACTTAAATCTTCCTTTGCTGATCAAGGACTCAACACGGTTGACCTAGTAGCACTCTCAGGTGCTCATACTTTTGGGAGAGCACGTTGCCTTTTCATACTTGATCGATTATACAACTTCAACAATACTGGCAAACCCGATCCAACTCTTGATACAACATACTTAAAACAATTGCGAAACCAATGTCCTCGGAATGGAACTGGAAATAACCGTGTCAATTTCGACCCAACTACTCCTGATACATTGGACAAAAACTTCTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAAAGTGACCAAGAATTGTTCTCAACACCGGGTGCAGATACGATTAGCATTGTCAACAGCTTTGCAAATAGCCAAAATGTTTTCTTTCAGAACTTTATAAATTCAATGATTAAAATGGGTAATATTGATGTCCTTACCGGAAAGAAAGGAGAAATTAGAAAGCAATGCAATTTTATTAACAAGAAATCTTTTGAATCGGATCTTGCCAGTGTGGCCTCTACAGAATCAATGGAGGGGGATATGGTCAGTTCAATCTAA

Protein sequence

>MsG0280007677.01.T01

MPASLIRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPNINSLRGLDVINQIKTKVEKACPNRVSCADILTLAAGISSVLTGGPGWEVPLGRRDSLTANQSLANQNLPGPNFSLDQLKSSFADQGLNTVDLVALSGAHTFGRARCLFILDRLYNFNNTGKPDPTLDTTYLKQLRNQCPRNGTGNNRVNFDPTTPDTLDKNFYNNLQGKKGLLQSDQELFSTPGADTISIVNSFANSQNVFFQNFINSMIKMGNIDVLTGKKGEIRKQCNFINKKSFESDLASVASTESMEGDMVSSI*