AlfalfaGEDB | MsG0280007677.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007677.01

KEGG: K00430
GO: GO:0004601 GO:0006979 GO:0020037 GO:0042744 GO:0055114
PFAM: PF00141

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007677.01.T01	XP_003594486.1	95.96	297	12	0	1	297	59	355	0	584

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007677.01.T01	P24102	60.364	275	108	1	1	274	61	335	5.70E-121	353

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007677.01.T01	G7IJT4	95.960	297	12	0	1	297	59	355	0.0	584

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000843.01	MsG0280007677.01	-0.812635	3.838607e-51	2.453409e-48
MsG0180001029.01	MsG0280007677.01	0.804328	2.277515e-49	1.170963e-46
MsG0180001800.01	MsG0280007677.01	0.821591	3.722020e-53	3.040943e-50
MsG0180001929.01	MsG0280007677.01	-0.809800	1.581766e-50	9.376996e-48
MsG0180002255.01	MsG0280007677.01	0.828415	9.105022e-55	9.044416e-52
MsG0180002700.01	MsG0280007677.01	-0.810303	1.232568e-50	7.403040e-48
MsG0180003237.01	MsG0280007677.01	0.834916	2.273099e-56	2.736486e-53
MsG0180003375.01	MsG0280007677.01	0.802081	6.644938e-49	3.225504e-46
MsG0180003600.01	MsG0280007677.01	0.819413	1.176612e-52	9.048107e-50
MsG0180004059.01	MsG0280007677.01	0.809724	1.642628e-50	9.718294e-48

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PPI

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Gene1	Gene2	Type
MsG0280007677.01	MsG0280011128.01	PPI
MsG0280007677.01	MsG0680032464.01	PPI
MsG0280007677.01	MsG0280010150.01	PPI
MsG0280007677.01	MsG0280010097.01	PPI
MsG0280007677.01	MsG0880043112.01	PPI
MsG0280009597.01	MsG0280007677.01	PPI
MsG0280010152.01	MsG0280007677.01	PPI
MsG0380016158.01	MsG0280007677.01	PPI
MsG0680032461.01	MsG0280007677.01	PPI
MsG0880047383.01	MsG0280007677.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007677.01.T01	MTR_2g029740	95.960	297	12	0	1	297	59	355	0.0	584
MsG0280007677.01.T01	MTR_2g029750	87.542	297	36	1	1	297	59	354	0.0	531
MsG0280007677.01.T01	MTR_2g028980	81.818	297	54	0	1	297	59	355	2.13e-180	501
MsG0280007677.01.T01	MTR_2g029800	76.431	297	68	1	1	297	59	353	3.56e-163	457
MsG0280007677.01.T01	MTR_2g029815	75.421	297	70	2	1	297	59	352	2.01e-160	451
MsG0280007677.01.T01	MTR_2g029820	72.391	297	82	0	1	297	59	355	6.65e-157	442
MsG0280007677.01.T01	MTR_2g029830	72.483	298	81	1	1	297	58	355	8.52e-156	439
MsG0280007677.01.T01	MTR_2g029560	71.777	287	79	1	3	289	56	340	2.50e-148	420
MsG0280007677.01.T01	MTR_2g029860	70.034	297	87	1	1	297	59	353	2.01e-145	413
MsG0280007677.01.T01	MTR_2g029830	71.731	283	79	1	16	297	5	287	4.07e-145	409

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007677.01.T01	AT2G38380	60.364	275	108	1	1	274	61	335	5.81e-122	353
MsG0280007677.01.T01	AT2G38390	58.182	275	114	1	1	274	61	335	2.35e-117	341
MsG0280007677.01.T01	AT4G08770	58.123	277	114	2	1	275	54	330	8.12e-114	332
MsG0280007677.01.T01	AT3G32980	55.518	299	124	3	1	297	61	352	1.86e-113	332
MsG0280007677.01.T01	AT4G08780	57.040	277	117	2	1	275	54	330	2.67e-113	331
MsG0280007677.01.T01	AT3G49120	55.184	299	125	3	1	297	62	353	2.42e-112	329
MsG0280007677.01.T01	AT3G49110	54.849	299	126	3	1	297	63	354	5.42e-112	328
MsG0280007677.01.T01	AT5G06720	58.889	270	111	0	3	272	64	333	3.60e-111	325
MsG0280007677.01.T01	AT5G06730	54.804	281	127	0	3	283	65	345	1.07e-108	320
MsG0280007677.01.T01	AT5G19880	52.536	276	126	4	1	272	55	329	4.66e-97	289

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Find 88 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAGCCTAATGAGAC+TGG	0.538497	2:-19002053	None:intergenic
AAACGCTATAAAATGCAATT+TGG	0.155420	2:-19001987	None:intergenic
AAAGAAAAGTGCTAGCTAGC+TGG	0.408477	2:+19005832	MsG0280007677.01.T01:three_prime_UTR
AAAGCTTGTGGCAGAAATAA+AGG	0.359865	2:-19005940	None:intergenic
AAATCTTCCTTTGCTGATCA+AGG	0.415354	2:+19003203	MsG0280007677.01.T01:CDS
AACAGCTTTGTGCTGTGTAG+TGG	0.556984	2:+19001896	MsG0280007677.01.T01:five_prime_UTR
AACGCTATAAAATGCAATTT+GGG	0.339444	2:-19001986	None:intergenic
AACTTCTACAACAATCTTCA+AGG	0.429407	2:+19005486	MsG0280007677.01.T01:CDS
AAGAAAAGTGCTAGCTAGCT+GGG	0.510762	2:+19005833	MsG0280007677.01.T01:three_prime_UTR
AAGTATGTTGTATCAAGAGT+TGG	0.504944	2:-19005375	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAAAATTCTTTGGTCC+TGG	+	Chr2:19005100-19005119	MsG0280007677.01.T01:intron	30.0%
AAAGTAACCCACATTCATTT+AGG	-	Chr2:19003755-19003774	None:intergenic	30.0%
AAATATTGAAGTCTGTTCGA+AGG	-	Chr2:19004888-19004907	None:intergenic	30.0%
AACTTCTACAACAATCTTCA+AGG	+	Chr2:19005486-19005505	MsG0280007677.01.T01:CDS	30.0%
AAGAATTATTAGACCACCTA+AGG	-	Chr2:19004275-19004294	None:intergenic	30.0%
AAGTATGTTGTATCAAGAGT+TGG	-	Chr2:19005378-19005397	None:intergenic	30.0%
AAGTTAAAAACAGTTCTCGT+GGG	-	Chr2:19003966-19003985	None:intergenic	30.0%
AATCATCGTAAACTAGAAGA+GGG	-	Chr2:19004189-19004208	None:intergenic	30.0%
AGTGATAATAGGTTAACGTT+CGG	-	Chr2:19004308-19004327	None:intergenic	30.0%
AGTTGATCTAAACTGAAGTT+GGG	-	Chr2:19003182-19003201	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	19001853	19006051	19001853	ID=MsG0280007677.01;Name=MsG0280007677.01
Chr2	mRNA	19001853	19006051	19001853	ID=MsG0280007677.01.T01;Parent=MsG0280007677.01;Name=MsG0280007677.01.T01;_AED=0.48;_eAED=0.48;_QI=193\|1\|1\|1\|1\|1\|4\|269\|297
Chr2	exon	19001853	19002093	19001853	ID=MsG0280007677.01.T01:exon:10086;Parent=MsG0280007677.01.T01
Chr2	exon	19002747	19002938	19002747	ID=MsG0280007677.01.T01:exon:10087;Parent=MsG0280007677.01.T01
Chr2	exon	19003092	19003257	19003092	ID=MsG0280007677.01.T01:exon:10088;Parent=MsG0280007677.01.T01
Chr2	exon	19005295	19006051	19005295	ID=MsG0280007677.01.T01:exon:10089;Parent=MsG0280007677.01.T01
Chr2	five_prime_UTR	19001853	19002045	19001853	ID=MsG0280007677.01.T01:five_prime_utr;Parent=MsG0280007677.01.T01
Chr2	CDS	19002046	19002093	19002046	ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2	CDS	19002747	19002938	19002747	ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2	CDS	19003092	19003257	19003092	ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2	CDS	19005295	19005782	19005295	ID=MsG0280007677.01.T01:cds;Parent=MsG0280007677.01.T01
Chr2	three_prime_UTR	19005783	19006051	19005783	ID=MsG0280007677.01.T01:three_prime_utr;Parent=MsG0280007677.01.T01

Gene Sequence

>MsG0280007677.01.T01

ATGCCTGCCAGTCTCATTAGGCTTCATTTTCATGATTGTTTCGTTCAAGGTTGTGATGCATCAGTTTTGTTGAATAACACTGCAACTATTGTGAGTGAACAAGATGCTTTTCCAAATATCAACTCCTTAAGAGGATTAGATGTTATCAATCAAATTAAGACTAAAGTGGAAAAAGCTTGTCCTAATAGAGTTTCTTGTGCTGATATTCTTACACTTGCGGCTGGAATATCTTCTGTTCTGACTGGGGGTCCAGGTTGGGAGGTTCCACTAGGAAGAAGGGATAGTCTAACAGCAAATCAATCCCTTGCCAATCAAAATCTTCCAGGTCCCAACTTCAGTTTAGATCAACTTAAATCTTCCTTTGCTGATCAAGGACTCAACACGGTTGACCTAGTAGCACTCTCAGGTGCTCATACTTTTGGGAGAGCACGTTGCCTTTTCATACTTGATCGATTATACAACTTCAACAATACTGGCAAACCCGATCCAACTCTTGATACAACATACTTAAAACAATTGCGAAACCAATGTCCTCGGAATGGAACTGGAAATAACCGTGTCAATTTCGACCCAACTACTCCTGATACATTGGACAAAAACTTCTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAAAGTGACCAAGAATTGTTCTCAACACCGGGTGCAGATACGATTAGCATTGTCAACAGCTTTGCAAATAGCCAAAATGTTTTCTTTCAGAACTTTATAAATTCAATGATTAAAATGGGTAATATTGATGTCCTTACCGGAAAGAAAGGAGAAATTAGAAAGCAATGCAATTTTATTAACAAGAAATCTTTTGAATCGGATCTTGCCAGTGTGGCCTCTACAGAATCAATGGAGGGGGATATGGTCAGTTCAATCTAA

Protein sequence

>MsG0280007677.01.T01

MPASLIRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPNINSLRGLDVINQIKTKVEKACPNRVSCADILTLAAGISSVLTGGPGWEVPLGRRDSLTANQSLANQNLPGPNFSLDQLKSSFADQGLNTVDLVALSGAHTFGRARCLFILDRLYNFNNTGKPDPTLDTTYLKQLRNQCPRNGTGNNRVNFDPTTPDTLDKNFYNNLQGKKGLLQSDQELFSTPGADTISIVNSFANSQNVFFQNFINSMIKMGNIDVLTGKKGEIRKQCNFINKKSFESDLASVASTESMEGDMVSSI*