AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008885.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008885.01.T02 MTR_2g461200 98.291 234 4 0 1 234 1 234 2.78e-166 460
MsG0280008885.01.T02 MTR_2g461200 99.134 231 2 0 1 231 1 231 7.15e-166 457
MsG0280008885.01.T02 MTR_4g019610 94.421 233 13 0 1 233 1 233 4.79e-137 385
MsG0280008885.01.T02 MTR_4g019610 94.805 231 12 0 1 231 1 231 2.25e-136 384
MsG0280008885.01.T02 MTR_2g461200 97.778 180 4 0 1 180 1 180 1.65e-123 348
MsG0280008885.01.T02 MTR_5g088660 58.009 231 89 3 1 231 1 223 1.06e-80 242
MsG0280008885.01.T02 MTR_5g088685 75.000 48 12 0 133 180 2 49 7.07e-18 75.5
MsG0280008885.01.T01 MTR_2g461200 98.291 234 4 0 1 234 1 234 2.78e-166 460
MsG0280008885.01.T01 MTR_2g461200 99.134 231 2 0 1 231 1 231 7.15e-166 457
MsG0280008885.01.T01 MTR_4g019610 94.421 233 13 0 1 233 1 233 4.79e-137 385
MsG0280008885.01.T01 MTR_4g019610 94.805 231 12 0 1 231 1 231 2.25e-136 384
MsG0280008885.01.T01 MTR_2g461200 97.778 180 4 0 1 180 1 180 1.65e-123 348
MsG0280008885.01.T01 MTR_5g088660 58.009 231 89 3 1 231 1 223 1.06e-80 242
MsG0280008885.01.T01 MTR_5g088685 75.000 48 12 0 133 180 2 49 7.07e-18 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008885.01.T02 AT2G18110 80.531 226 43 1 7 231 6 231 8.95e-112 321
MsG0280008885.01.T02 AT1G30230 79.039 229 47 1 7 234 6 234 2.53e-108 313
MsG0280008885.01.T02 AT1G30230 79.646 226 45 1 7 231 6 231 1.25e-107 310
MsG0280008885.01.T02 AT5G12110 60.606 231 88 3 1 231 1 228 4.79e-78 235
MsG0280008885.01.T02 AT5G19510 58.009 231 90 2 1 231 1 224 3.15e-72 220
MsG0280008885.01.T01 AT2G18110 80.531 226 43 1 7 231 6 231 8.95e-112 321
MsG0280008885.01.T01 AT1G30230 79.039 229 47 1 7 234 6 234 2.53e-108 313
MsG0280008885.01.T01 AT1G30230 79.646 226 45 1 7 231 6 231 1.25e-107 310
MsG0280008885.01.T01 AT5G12110 60.606 231 88 3 1 231 1 228 4.79e-78 235
MsG0280008885.01.T01 AT5G19510 58.009 231 90 2 1 231 1 224 3.15e-72 220

Find 11 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAACCTTAAGGCTGAATC+TGG 0.331891 2:+40932876 MsG0280008885.01.T01:CDS
TCAACCCAGATTCAGCCTTA+AGG 0.411025 2:-40932881 None:intergenic
AGTTACACTCTATAACCTTA+AGG 0.486396 2:+40932866 MsG0280008885.01.T01:CDS
CTTACACGCAGTTACATCAC+TGG 0.529989 2:+40932924 MsG0280008885.01.T01:CDS
AAGAGAGGCGAGGAGATTGA+AGG 0.541739 2:-40932467 None:intergenic
TGATGTAACTGCGTGTAAGA+AGG 0.549903 2:-40932920 None:intergenic
ATAACCTTAAGGCTGAATCT+GGG 0.592348 2:+40932877 MsG0280008885.01.T01:CDS
GAGTTTACCTGTGTTAAGAG+AGG 0.611958 2:-40932482 None:intergenic
TTACACGCAGTTACATCACT+GGG 0.625744 2:+40932925 MsG0280008885.01.T01:CDS
CTCCTCGCCTCTCTTAACAC+AGG 0.661656 2:+40932475 MsG0280008885.01.T01:five_prime_UTR
TACCTGTGTTAAGAGAGGCG+AGG 0.690075 2:-40932477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATGTTTTTTTTTTTTT+TGG + Chr2:40932787-40932806 MsG0280008885.01.T01:intron 10.0%
!! AAAATAAGATATTTCACTAT+TGG - Chr2:40934232-40934251 None:intergenic 15.0%
!!! AATTGTTTTCTTAAAAGTTA+CGG - Chr2:40935049-40935068 None:intergenic 15.0%
!!! AGTAAAAAGATTGAATTTTT+CGG + Chr2:40932652-40932671 MsG0280008885.01.T01:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG + Chr2:40933871-40933890 MsG0280008885.01.T01:intron 15.0%
!! ATAGTATACAATAAACTGAA+TGG - Chr2:40933865-40933884 None:intergenic 20.0%
!! TATTGTTAACATCGAATTTA+GGG - Chr2:40932548-40932567 None:intergenic 20.0%
!! TTAATGAATGACTGTAATTA+AGG + Chr2:40935218-40935237 MsG0280008885.01.T01:intron 20.0%
!! TTCATATCCTCATAATTATT+CGG + Chr2:40933542-40933561 MsG0280008885.01.T01:intron 20.0%
!! TTTATTGTAATAAGCATTTG+AGG + Chr2:40935084-40935103 MsG0280008885.01.T01:intron 20.0%
!!! ATAAGTTTATTTTCCACTAT+TGG + Chr2:40934156-40934175 MsG0280008885.01.T01:intron 20.0%
!!! ATTGTTTTCTTAAAAGTTAC+GGG - Chr2:40935048-40935067 None:intergenic 20.0%
!!! TAAGTTTATTTTCCACTATT+GGG + Chr2:40934157-40934176 MsG0280008885.01.T01:intron 20.0%
!!! TGTTTTTATTTGATCTGTTT+AGG + Chr2:40933040-40933059 MsG0280008885.01.T01:intron 20.0%
!!! TTAATGCTTTTGAAACATTA+GGG - Chr2:40934933-40934952 None:intergenic 20.0%
!!! TTACTTACAGATTTTATTGA+AGG - Chr2:40934543-40934562 None:intergenic 20.0%
!!! TTTAATGCTTTTGAAACATT+AGG - Chr2:40934934-40934953 None:intergenic 20.0%
!!! TTTTAAGAAAACAATTTAGC+AGG + Chr2:40935053-40935072 MsG0280008885.01.T01:intron 20.0%
! AAAAACAAAAATCTCATCTG+AGG - Chr2:40934698-40934717 None:intergenic 25.0%
! ATAATTGACAAAGATGGTAA+GGG - Chr2:40933190-40933209 None:intergenic 25.0%
! ATGTGACATTAAAAGTTCAT+GGG + Chr2:40934874-40934893 MsG0280008885.01.T01:intron 25.0%
! ATTGGAAAACAACTTATTAC+CGG - Chr2:40935287-40935306 None:intergenic 25.0%
! CTATTGTTAACATCGAATTT+AGG - Chr2:40932549-40932568 None:intergenic 25.0%
! TAATATCTCACTTGATCTAA+TGG + Chr2:40934003-40934022 MsG0280008885.01.T01:intron 25.0%
! TAATGCCATATCATATTCTT+TGG + Chr2:40934625-40934644 MsG0280008885.01.T01:intron 25.0%
! TATAATTGACAAAGATGGTA+AGG - Chr2:40933191-40933210 None:intergenic 25.0%
! TCAAATTATGCTTACTATTG+TGG + Chr2:40934430-40934449 MsG0280008885.01.T01:CDS 25.0%
! TCACATATAATTGACAAAGA+TGG - Chr2:40933196-40933215 None:intergenic 25.0%
! TGTGAAGTAGAAGAAAAAAA+TGG + Chr2:40932842-40932861 MsG0280008885.01.T01:intron 25.0%
! TTATAACACATTCCAGATAA+TGG - Chr2:40934777-40934796 None:intergenic 25.0%
!! AATAAGCATTTGAGGTAATA+AGG + Chr2:40935092-40935111 MsG0280008885.01.T01:intron 25.0%
!! AATAAGTTTGCTTTCACTAT+TGG - Chr2:40934042-40934061 None:intergenic 25.0%
!! ATAAGCATTTGAGGTAATAA+GGG + Chr2:40935093-40935112 MsG0280008885.01.T01:intron 25.0%
!! TTTCGGTAATTTGTGTTAAT+GGG + Chr2:40932669-40932688 MsG0280008885.01.T01:intron 25.0%
!!! ATATGTTTGTTTTCCACTAT+TGG + Chr2:40933935-40933954 MsG0280008885.01.T01:intron 25.0%
!!! CAGATGAGATTTTTGTTTTT+GGG + Chr2:40934698-40934717 MsG0280008885.01.T01:intron 25.0%
!!! CCTAATTTGAGTTTTTCTTT+GGG + Chr2:40932723-40932742 MsG0280008885.01.T01:intron 25.0%
!!! CTAATTTGAGTTTTTCTTTG+GGG + Chr2:40932724-40932743 MsG0280008885.01.T01:intron 25.0%
!!! CTAGCTATTTTAGTTATCTT+GGG - Chr2:40935025-40935044 None:intergenic 25.0%
!!! TAATTTGAGTTTTTCTTTGG+GGG + Chr2:40932725-40932744 MsG0280008885.01.T01:intron 25.0%
!!! TAGCTATTTTAGTTATCTTG+GGG - Chr2:40935024-40935043 None:intergenic 25.0%
!!! TATGTTTGTTTTCCACTATT+GGG + Chr2:40933936-40933955 MsG0280008885.01.T01:intron 25.0%
!!! TCAGATGAGATTTTTGTTTT+TGG + Chr2:40934697-40934716 MsG0280008885.01.T01:intron 25.0%
!!! TCCTAATTTGAGTTTTTCTT+TGG + Chr2:40932722-40932741 MsG0280008885.01.T01:intron 25.0%
!!! TTCAGATTTTATTTGTCTGT+TGG + Chr2:40934565-40934584 MsG0280008885.01.T01:intron 25.0%
!!! TTTTCGGTAATTTGTGTTAA+TGG + Chr2:40932668-40932687 MsG0280008885.01.T01:intron 25.0%
AAACAACTTATTACCGGATT+TGG - Chr2:40935281-40935300 None:intergenic 30.0%
AATCTGCAATTCGTATAACA+TGG + Chr2:40934653-40934672 MsG0280008885.01.T01:intron 30.0%
AATGGTTGATTGATACATGA+AGG + Chr2:40935169-40935188 MsG0280008885.01.T01:intron 30.0%
ACATTCCCATATTCATATGA+TGG - Chr2:40933117-40933136 None:intergenic 30.0%
AGATAAACTCATTCCTTTCA+TGG + Chr2:40935368-40935387 MsG0280008885.01.T01:intron 30.0%
AGCCTTAAAAAACACAGATT+CGG - Chr2:40932609-40932628 None:intergenic 30.0%
AGTGAAAGCAAACTTATTCA+CGG + Chr2:40934044-40934063 MsG0280008885.01.T01:intron 30.0%
AGTGTCCAAATTTGTAATGA+GGG + Chr2:40935316-40935335 MsG0280008885.01.T01:intron 30.0%
AGTTACACTCTATAACCTTA+AGG + Chr2:40932866-40932885 MsG0280008885.01.T01:CDS 30.0%
ATAATTATTCGGAATCTGGT+TGG + Chr2:40933553-40933572 MsG0280008885.01.T01:intron 30.0%
ATGGTGCACAAATAAGATAT+TGG + Chr2:40934123-40934142 MsG0280008885.01.T01:intron 30.0%
CAGTTCCATCATATGAATAT+GGG + Chr2:40933109-40933128 MsG0280008885.01.T01:CDS 30.0%
CATGTGACATTAAAAGTTCA+TGG + Chr2:40934873-40934892 MsG0280008885.01.T01:intron 30.0%
CATTACAAATTTGGACACTA+TGG - Chr2:40935315-40935334 None:intergenic 30.0%
CCCAAAGAAAAACTCAAATT+AGG - Chr2:40932726-40932745 None:intergenic 30.0%
GTAAAAAAATTGTGCCTGTT+TGG + Chr2:40934967-40934986 MsG0280008885.01.T01:intron 30.0%
TAATTGACAAAGATGGTAAG+GGG - Chr2:40933189-40933208 None:intergenic 30.0%
TAGTGTCCAAATTTGTAATG+AGG + Chr2:40935315-40935334 MsG0280008885.01.T01:intron 30.0%
TCAAAAAAGCTAATCCAAAC+AGG - Chr2:40934984-40935003 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG + Chr2:40933108-40933127 MsG0280008885.01.T01:CDS 30.0%
TGAAAGGAATGAGTTTATCT+AGG - Chr2:40935368-40935387 None:intergenic 30.0%
TGATTAGGAAAAATGAGAGA+GGG - Chr2:40935150-40935169 None:intergenic 30.0%
TGTGACATTAAAAGTTCATG+GGG + Chr2:40934875-40934894 MsG0280008885.01.T01:intron 30.0%
TTGATTAGGAAAAATGAGAG+AGG - Chr2:40935151-40935170 None:intergenic 30.0%
TTGTGATTTCATCCATTATC+TGG + Chr2:40934762-40934781 MsG0280008885.01.T01:intron 30.0%
! ATTTGAGGTAATAAGGGATT+TGG + Chr2:40935099-40935118 MsG0280008885.01.T01:intron 30.0%
! GTATCAATCAACCATTGATT+AGG - Chr2:40935165-40935184 None:intergenic 30.0%
! TATTCATATGATGGAACTGA+TGG - Chr2:40933108-40933127 None:intergenic 30.0%
! TGGACATCAATTTAGAGTAT+TGG + Chr2:40933573-40933592 MsG0280008885.01.T01:intron 30.0%
!! CTCTCATTTTTCCTAATCAA+TGG + Chr2:40935151-40935170 MsG0280008885.01.T01:intron 30.0%
!!! ATTTTTCAAGGCTATGTCTA+CGG + Chr2:40933883-40933902 MsG0280008885.01.T01:intron 30.0%
!!! ATTTTTCAAGGCTATGTCTA+TGG + Chr2:40933883-40933902 MsG0280008885.01.T01:intron 30.0%
!!! GCTAGCTATTTTAGTTATCT+TGG - Chr2:40935026-40935045 None:intergenic 30.0%
AACTCATTCCTTTCATGGTA+CGG + Chr2:40935373-40935392 MsG0280008885.01.T01:CDS 35.0%
ACGGTGCACAAATAAGATAT+TGG + Chr2:40933902-40933921 MsG0280008885.01.T01:intron 35.0%
ATAACCTTAAGGCTGAATCT+GGG + Chr2:40932877-40932896 MsG0280008885.01.T01:CDS 35.0%
ATCCTCAACCATATTGTCAA+CGG - Chr2:40934468-40934487 None:intergenic 35.0%
ATGAATATGGGAATGTTGCT+AGG + Chr2:40933121-40933140 MsG0280008885.01.T01:CDS 35.0%
ATGTCACATGATTCAAAGAG+TGG - Chr2:40934863-40934882 None:intergenic 35.0%
CAATAAACTGAATGGTGCAT+AGG - Chr2:40934078-40934097 None:intergenic 35.0%
CCAGATTCCGAATAATTATG+AGG - Chr2:40933552-40933571 None:intergenic 35.0%
CCTCATAATTATTCGGAATC+TGG + Chr2:40933549-40933568 MsG0280008885.01.T01:intron 35.0%
CTGCACCAAAGAATATGATA+TGG - Chr2:40934633-40934652 None:intergenic 35.0%
GCCTTAAAAAACACAGATTC+GGG - Chr2:40932608-40932627 None:intergenic 35.0%
GTGTCCAAATTTGTAATGAG+GGG + Chr2:40935317-40935336 MsG0280008885.01.T01:intron 35.0%
TACACCCCTCATTACAAATT+TGG - Chr2:40935324-40935343 None:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG + Chr2:40932876-40932895 MsG0280008885.01.T01:CDS 35.0%
TATCTCACTTGATCTAATGG+TGG + Chr2:40934006-40934025 MsG0280008885.01.T01:intron 35.0%
TGAATGACTGTAATTAAGGC+AGG + Chr2:40935222-40935241 MsG0280008885.01.T01:intron 35.0%
TGGATAAAACATTCCACCAT+TGG - Chr2:40934022-40934041 None:intergenic 35.0%
TGGGAAATCATCTGTATTGT+TGG + Chr2:40933620-40933639 MsG0280008885.01.T01:CDS 35.0%
TGTCACATGATTCAAAGAGT+GGG - Chr2:40934862-40934881 None:intergenic 35.0%
TTCGTATAACATGGAGAACA+TGG + Chr2:40934662-40934681 MsG0280008885.01.T01:intron 35.0%
TTCTTCAAGCTTCTTCATGT+CGG - Chr2:40933670-40933689 None:intergenic 35.0%
! TCTTGTTTCCGTTGACAATA+TGG + Chr2:40934457-40934476 MsG0280008885.01.T01:CDS 35.0%
! TTTCTGCTGATTGCATTATC+AGG + Chr2:40933597-40933616 MsG0280008885.01.T01:intron 35.0%
!! ATTGAGTTTTGTGACTGTAG+TGG + Chr2:40933290-40933309 MsG0280008885.01.T01:intron 35.0%
!! GATGACGATGTTGATTTGTT+TGG + Chr2:40933425-40933444 MsG0280008885.01.T01:CDS 35.0%
!!! TCCCGAATCTGTGTTTTTTA+AGG + Chr2:40932604-40932623 MsG0280008885.01.T01:intron 35.0%
AATATGGGAATGTTGCTAGG+TGG + Chr2:40933124-40933143 MsG0280008885.01.T01:CDS 40.0%
ACTCATTCCTTTCATGGTAC+GGG + Chr2:40935374-40935393 MsG0280008885.01.T01:CDS 40.0%
ACTCTGGACATACTCATTGA+TGG - Chr2:40934507-40934526 None:intergenic 40.0%
ATTGTTGGATGTGAAGCCAT+GGG + Chr2:40933635-40933654 MsG0280008885.01.T01:CDS 40.0%
CTCTGGACATACTCATTGAT+GGG - Chr2:40934506-40934525 None:intergenic 40.0%
GAGTTTACCTGTGTTAAGAG+AGG - Chr2:40932485-40932504 None:intergenic 40.0%
GTTTAGGTACCAAGCTTCAA+AGG + Chr2:40933056-40933075 MsG0280008885.01.T01:intron 40.0%
TATTGTTGGATGTGAAGCCA+TGG + Chr2:40933634-40933653 MsG0280008885.01.T01:CDS 40.0%
TCATATCTCGCTTGATCCAA+TGG + Chr2:40934193-40934212 MsG0280008885.01.T01:intron 40.0%
TGACTGTAATTAAGGCAGGA+TGG + Chr2:40935226-40935245 MsG0280008885.01.T01:intron 40.0%
TGAGATCTGTTCAGTTGGAA+GGG + Chr2:40933694-40933713 MsG0280008885.01.T01:CDS 40.0%
TGATGTAACTGCGTGTAAGA+AGG - Chr2:40932923-40932942 None:intergenic 40.0%
TGGATCAAGCGAGATATGAA+GGG - Chr2:40934192-40934211 None:intergenic 40.0%
TTACACGCAGTTACATCACT+GGG + Chr2:40932925-40932944 MsG0280008885.01.T01:CDS 40.0%
TTCCGTTGACAATATGGTTG+AGG + Chr2:40934463-40934482 MsG0280008885.01.T01:CDS 40.0%
TTGGATCAAGCGAGATATGA+AGG - Chr2:40934193-40934212 None:intergenic 40.0%
! AAACTTGTTCCTGTTGGGTA+CGG + Chr2:40934395-40934414 MsG0280008885.01.T01:CDS 40.0%
! CATATGCATTGACCCAATAG+TGG - Chr2:40933951-40933970 None:intergenic 40.0%
! TAGCCAAACTTGTTCCTGTT+GGG + Chr2:40934390-40934409 MsG0280008885.01.T01:intron 40.0%
! TGCTGATTGCATTATCAGGT+GGG + Chr2:40933601-40933620 MsG0280008885.01.T01:intron 40.0%
! TTCAGTTGGAAGGGTTGTTT+TGG + Chr2:40933703-40933722 MsG0280008885.01.T01:CDS 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG + Chr2:40933439-40933458 MsG0280008885.01.T01:CDS 40.0%
!! TAGGGTAATTTGCTTTGCCA+GGG - Chr2:40934915-40934934 None:intergenic 40.0%
!! TCAGTTGGAAGGGTTGTTTT+GGG + Chr2:40933704-40933723 MsG0280008885.01.T01:CDS 40.0%
!! TGATGTCATCCTTTGAAGCT+TGG - Chr2:40933068-40933087 None:intergenic 40.0%
!! TTAGGGTAATTTGCTTTGCC+AGG - Chr2:40934916-40934935 None:intergenic 40.0%
!! TTGGACACTATGGTACTGAT+TGG - Chr2:40935305-40935324 None:intergenic 40.0%
AAATGACAGCGACAGCAAGT+CGG - Chr2:40934726-40934745 None:intergenic 45.0%
ACGGGGGTTAACTTTAACTC+AGG + Chr2:40935392-40935411 MsG0280008885.01.T01:CDS 45.0%
AGAGACTGAGGAAGAGAAGA+AGG + Chr2:40933451-40933470 MsG0280008885.01.T01:CDS 45.0%
AGCAGTGAGATCTGTTCAGT+TGG + Chr2:40933689-40933708 MsG0280008885.01.T01:CDS 45.0%
ATCTTCATCCTCAGCTTCAG+CGG - Chr2:40933405-40933424 None:intergenic 45.0%
ATGGACAGCATGAGAGAATG+AGG + Chr2:40935245-40935264 MsG0280008885.01.T01:intron 45.0%
CACTGTGGAATCTTCTCTTG+TGG + Chr2:40933337-40933356 MsG0280008885.01.T01:CDS 45.0%
CTCATTCCTTTCATGGTACG+GGG + Chr2:40935375-40935394 MsG0280008885.01.T01:CDS 45.0%
CTTACACGCAGTTACATCAC+TGG + Chr2:40932924-40932943 MsG0280008885.01.T01:CDS 45.0%
GCGACTTAATGACCCAATAG+TGG - Chr2:40933982-40934001 None:intergenic 45.0%
GGGACTTATTGACCCAATAG+TGG - Chr2:40934172-40934191 None:intergenic 45.0%
GTACCCAACAGGAACAAGTT+TGG - Chr2:40934396-40934415 None:intergenic 45.0%
GTCTTTGTGTCAGAAACTGG+AGG - Chr2:40933383-40933402 None:intergenic 45.0%
GTGAGATCTGTTCAGTTGGA+AGG + Chr2:40933693-40933712 MsG0280008885.01.T01:CDS 45.0%
TATCTCGCTTGATCCAATGG+TGG + Chr2:40934196-40934215 MsG0280008885.01.T01:intron 45.0%
TCAACCCAGATTCAGCCTTA+AGG - Chr2:40932884-40932903 None:intergenic 45.0%
TCATTCCTTTCATGGTACGG+GGG + Chr2:40935376-40935395 MsG0280008885.01.T01:CDS 45.0%
TGTCCAGAGTTGTGACATTG+TGG + Chr2:40934517-40934536 MsG0280008885.01.T01:CDS 45.0%
TGTGACTGTAGTGGTGTTTC+TGG + Chr2:40933299-40933318 MsG0280008885.01.T01:intron 45.0%
TGTGGAATCTTCTCTTGTGG+CGG + Chr2:40933340-40933359 MsG0280008885.01.T01:CDS 45.0%
TTCTTGATACCGTACCCAAC+AGG - Chr2:40934407-40934426 None:intergenic 45.0%
! CTGCTGATTGCATTATCAGG+TGG + Chr2:40933600-40933619 MsG0280008885.01.T01:intron 45.0%
! GTAGCCAAACTTGTTCCTGT+TGG + Chr2:40934389-40934408 MsG0280008885.01.T01:intron 45.0%
!! CAGTTGGAAGGGTTGTTTTG+GGG + Chr2:40933705-40933724 MsG0280008885.01.T01:CDS 45.0%
!! TGTAGTGGTGTTTCTGGTGA+GGG + Chr2:40933305-40933324 MsG0280008885.01.T01:intron 45.0%
AAGAGAGGCGAGGAGATTGA+AGG - Chr2:40932470-40932489 None:intergenic 50.0%
ACGCAGTTACATCACTGGGT+AGG + Chr2:40932929-40932948 MsG0280008885.01.T01:intron 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG + Chr2:40933465-40933484 MsG0280008885.01.T01:CDS 50.0%
AGGCCACAATGTCACAACTC+TGG - Chr2:40934523-40934542 None:intergenic 50.0%
AGGCTCAGAGGATCCAAATC+CGG + Chr2:40935265-40935284 MsG0280008885.01.T01:intron 50.0%
AGTGGGCGCAAGACAAGAAT+CGG - Chr2:40934845-40934864 None:intergenic 50.0%
ATGTCGGTCTCATCATCCCA+TGG - Chr2:40933654-40933673 None:intergenic 50.0%
CATGAGAGAATGAGGCTCAG+AGG + Chr2:40935253-40935272 MsG0280008885.01.T01:intron 50.0%
GAGAGAGGGCTGAACCAAAA+GGG - Chr2:40935136-40935155 None:intergenic 50.0%
GCGGTCTTTGTGTCAGAAAC+TGG - Chr2:40933386-40933405 None:intergenic 50.0%
GTTAACCCCCGTACCATGAA+AGG - Chr2:40935384-40935403 None:intergenic 50.0%
TACCTGTGTTAAGAGAGGCG+AGG - Chr2:40932480-40932499 None:intergenic 50.0%
TGAGAGAGGGCTGAACCAAA+AGG - Chr2:40935137-40935156 None:intergenic 50.0%
TGTGTCAGAAACTGGAGGAG+TGG - Chr2:40933378-40933397 None:intergenic 50.0%
!! CTGTAGTGGTGTTTCTGGTG+AGG + Chr2:40933304-40933323 MsG0280008885.01.T01:intron 50.0%
!! GCTTTGCCAGGGTTTGTTAG+AGG - Chr2:40934904-40934923 None:intergenic 50.0%
CACAAAGACCGCTGAAGCTG+AGG + Chr2:40933394-40933413 MsG0280008885.01.T01:CDS 55.0%
CTCCTCGCCTCTCTTAACAC+AGG + Chr2:40932475-40932494 MsG0280008885.01.T01:five_prime_UTR 55.0%
CTGAACCAAAAGGGCTGGAG+CGG - Chr2:40935127-40935146 None:intergenic 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG + Chr2:40933466-40933485 MsG0280008885.01.T01:CDS 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG + Chr2:40933460-40933479 MsG0280008885.01.T01:CDS 55.0%
GGGTGTCCTCTAACAAACCC+TGG + Chr2:40934895-40934914 MsG0280008885.01.T01:intron 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG + Chr2:40933311-40933330 MsG0280008885.01.T01:CDS 55.0%
!! TGAGGGATCTGGTGTCACTG+TGG + Chr2:40933322-40933341 MsG0280008885.01.T01:CDS 55.0%
GAGGGCTGAACCAAAAGGGC+TGG - Chr2:40935132-40935151 None:intergenic 60.0%
! TGGATCCGCTCCAGCCCTTT+TGG + Chr2:40935119-40935138 MsG0280008885.01.T01:intron 60.0%
!! GCAGCAGCTGTGAAGGCATC+TGG + Chr2:40933488-40933507 MsG0280008885.01.T01:CDS 60.0%
GGAACGGGCAGCAGCTGTGA+AGG + Chr2:40933481-40933500 MsG0280008885.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 40932441 40935431 40932441 ID=MsG0280008885.01;Name=MsG0280008885.01
Chr2 mRNA 40932441 40935431 40932441 ID=MsG0280008885.01.T01;Parent=MsG0280008885.01;Name=MsG0280008885.01.T01;_AED=0.53;_eAED=0.53;_QI=65|0.83|0.85|0.85|0.83|0.71|7|0|251
Chr2 exon 40932852 40932946 40932852 ID=MsG0280008885.01.T01:exon:30127;Parent=MsG0280008885.01.T01
Chr2 exon 40932441 40932496 40932441 ID=MsG0280008885.01.T01:exon:30126;Parent=MsG0280008885.01.T01
Chr2 five_prime_UTR 40932441 40932496 40932441 ID=MsG0280008885.01.T01:five_prime_utr;Parent=MsG0280008885.01.T01
Chr2 five_prime_UTR 40932852 40932860 40932852 ID=MsG0280008885.01.T01:five_prime_utr;Parent=MsG0280008885.01.T01
Chr2 CDS 40932861 40932946 40932861 ID=MsG0280008885.01.T01:cds;Parent=MsG0280008885.01.T01
Chr2 CDS 40933062 40933178 40933062 ID=MsG0280008885.01.T01:cds;Parent=MsG0280008885.01.T01
Chr2 CDS 40933310 40933524 40933310 ID=MsG0280008885.01.T01:cds;Parent=MsG0280008885.01.T01
Chr2 CDS 40933619 40933732 40933619 ID=MsG0280008885.01.T01:cds;Parent=MsG0280008885.01.T01
Chr2 CDS 40934393 40934554 40934393 ID=MsG0280008885.01.T01:cds;Parent=MsG0280008885.01.T01
Chr2 CDS 40935370 40935431 40935370 ID=MsG0280008885.01.T01:cds;Parent=MsG0280008885.01.T01
Chr2 mRNA 40932711 40935431 40932711 ID=MsG0280008885.01.T02;Parent=MsG0280008885.01;Name=MsG0280008885.01.T02;_AED=0.52;_eAED=0.52;_QI=150|0.8|0.83|0.83|1|1|6|0|251
Chr2 exon 40932711 40932946 40932711 ID=MsG0280008885.01.T02:exon:30133;Parent=MsG0280008885.01.T02
Chr2 five_prime_UTR 40932711 40932860 40932711 ID=MsG0280008885.01.T02:five_prime_utr;Parent=MsG0280008885.01.T02
Chr2 CDS 40932861 40932946 40932861 ID=MsG0280008885.01.T02:cds;Parent=MsG0280008885.01.T02
Chr2 CDS 40933062 40933178 40933062 ID=MsG0280008885.01.T02:cds;Parent=MsG0280008885.01.T02
Chr2 CDS 40933310 40933524 40933310 ID=MsG0280008885.01.T02:cds;Parent=MsG0280008885.01.T02
Chr2 CDS 40933619 40933732 40933619 ID=MsG0280008885.01.T02:cds;Parent=MsG0280008885.01.T02
Chr2 CDS 40934393 40934554 40934393 ID=MsG0280008885.01.T02:cds;Parent=MsG0280008885.01.T02
Chr2 CDS 40935370 40935431 40935370 ID=MsG0280008885.01.T02:cds;Parent=MsG0280008885.01.T02
Gene Sequence

>MsG0280008885.01.T02

ATGGCAGTTACACTCTATAACCTTAAGGCTGAATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTTACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTTTATGCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATCGATGCTTTGTTGAGAATTGCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGGAATCTTCTCTTGTGGCGGAAGAGACTGTTGCCACTCCTCCAGTTTCTGACACAAAGACCGCTGAAGCTGAGGATGAAGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCTGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTATTGTTGGATGTGAAGCCATGGGATGATGAGACCGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTTGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATCTATAAACTCATTCCTTTCATGGTACGGGGGTTAACTTTAACTCAGGTTGAAATTGACATTTGA

>MsG0280008885.01.T01

ATGGCAGTTACACTCTATAACCTTAAGGCTGAATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTTACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTTTATGCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATCGATGCTTTGTTGAGAATTGCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGGAATCTTCTCTTGTGGCGGAAGAGACTGTTGCCACTCCTCCAGTTTCTGACACAAAGACCGCTGAAGCTGAGGATGAAGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCTGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTATTGTTGGATGTGAAGCCATGGGATGATGAGACCGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTTGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATCTATAAACTCATTCCTTTCATGGTACGGGGGTTAACTTTAACTCAGGTTGAAATTGACATTTGA

Protein sequence

>MsG0280008885.01.T02

MAVTLYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYAALPSVPSYEYGNVARWYKHIDALLRIAGVSGEGSGVTVESSLVAEETVATPPVSDTKTAEAEDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKIYKLIPFMVRGLTLTQVEIDI*

>MsG0280008885.01.T01

MAVTLYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYAALPSVPSYEYGNVARWYKHIDALLRIAGVSGEGSGVTVESSLVAEETVATPPVSDTKTAEAEDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKIYKLIPFMVRGLTLTQVEIDI*