AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048687.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048687.01.T02 MTR_2g461200 83.774 265 7 2 1 263 1 231 1.45e-129 367
MsG0080048687.01.T02 MTR_2g461200 83.774 265 7 2 1 263 1 231 1.51e-129 366
MsG0080048687.01.T02 MTR_4g019610 83.019 265 9 2 1 263 1 231 8.85e-129 364
MsG0080048687.01.T02 MTR_4g019610 83.019 265 9 2 1 263 1 231 1.21e-128 365
MsG0080048687.01.T02 MTR_2g461200 95.082 183 7 1 1 181 1 183 2.18e-99 288
MsG0080048687.01.T02 MTR_5g088660 51.711 263 87 4 1 263 1 223 1.26e-73 224
MsG0080048687.01.T02 MTR_5g088685 79.167 48 10 0 131 178 2 49 2.52e-20 82.0
MsG0080048687.01.T01 MTR_2g461200 83.774 265 7 2 1 263 1 231 1.45e-129 367
MsG0080048687.01.T01 MTR_2g461200 83.774 265 7 2 1 263 1 231 1.51e-129 366
MsG0080048687.01.T01 MTR_4g019610 83.019 265 9 2 1 263 1 231 8.85e-129 364
MsG0080048687.01.T01 MTR_4g019610 83.019 265 9 2 1 263 1 231 1.21e-128 365
MsG0080048687.01.T01 MTR_2g461200 95.082 183 7 1 1 181 1 183 2.18e-99 288
MsG0080048687.01.T01 MTR_5g088660 51.711 263 87 4 1 263 1 223 1.26e-73 224
MsG0080048687.01.T01 MTR_5g088685 79.167 48 10 0 131 178 2 49 2.52e-20 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048687.01.T02 AT2G18110 69.466 262 43 3 5 263 4 231 1.91e-103 300
MsG0080048687.01.T02 AT1G30230 66.794 262 50 3 5 263 4 231 4.06e-98 287
MsG0080048687.01.T02 AT1G30230 66.794 262 50 3 5 263 4 231 1.21e-97 286
MsG0080048687.01.T02 AT5G12110 53.030 264 87 4 1 263 1 228 5.98e-71 218
MsG0080048687.01.T02 AT5G19510 51.711 263 88 3 1 263 1 224 4.87e-65 202
MsG0080048687.01.T01 AT2G18110 69.466 262 43 3 5 263 4 231 1.91e-103 300
MsG0080048687.01.T01 AT1G30230 66.794 262 50 3 5 263 4 231 4.06e-98 287
MsG0080048687.01.T01 AT1G30230 66.794 262 50 3 5 263 4 231 1.21e-97 286
MsG0080048687.01.T01 AT5G12110 53.030 264 87 4 1 263 1 228 5.98e-71 218
MsG0080048687.01.T01 AT5G19510 51.711 263 88 3 1 263 1 224 4.87e-65 202

Find 11 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTAGTGATTTATGTTGT+TGG 0.371285 contig400end:+15796 MsG0080048687.01.T01:five_prime_UTR
TATAACCTTAAGGCTGAATC+TGG 0.393170 contig400end:+15896 MsG0080048687.01.T01:CDS
TTGTAGTGATTTATGTTGTT+GGG 0.402494 contig400end:+15797 MsG0080048687.01.T01:five_prime_UTR
TCAAGCCAGATTCAGCCTTA+AGG 0.411025 contig400end:-15901 MsG0080048687.01.T01:intergenic
AGTCACATTCTATAACCTTA+AGG 0.451347 contig400end:+15886 MsG0080048687.01.T01:CDS
GTTGAGAGAGGCGAGATTGA+AGG 0.469374 contig400end:-15476 MsG0080048687.01.T01:intergenic
CTCACACGCAGTTACATCAC+TGG 0.535094 contig400end:+15944 MsG0080048687.01.T01:CDS
AGGTTTACCTGTGTTGAGAG+AGG 0.599982 contig400end:-15488 MsG0080048687.01.T01:intergenic
TCACACGCAGTTACATCACT+GGG 0.638579 contig400end:+15945 MsG0080048687.01.T01:CDS
TGATGTAACTGCGTGTGAGA+AGG 0.646574 contig400end:-15940 MsG0080048687.01.T02:intergenic
AATCTCGCCTCTCTCAACAC+AGG 0.689189 contig400end:+15481 MsG0080048687.01.T02:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATCTAAATAATAAAAAA+AGG - contig400end:17188-17207 MsG0080048687.01.T01:intergenic 10.0%
!!! GTAAATTAACATTTTTTTTT+AGG - contig400end:18164-18183 MsG0080048687.01.T01:intergenic 10.0%
!!! GTAAATTAACTTTTTTTTTT+GGG + contig400end:17233-17252 MsG0080048687.01.T01:intron 10.0%
!!! TGTAAATTAACTTTTTTTTT+TGG + contig400end:17232-17251 MsG0080048687.01.T01:intron 10.0%
!!! TTAAGTTCTAATTTTTTTAT+GGG - contig400end:18244-18263 MsG0080048687.01.T01:intergenic 10.0%
!!! TTTAAGTTCTAATTTTTTTA+TGG - contig400end:18245-18264 MsG0080048687.01.T01:intergenic 10.0%
!!! TTTTCATTATTTATTTTTAG+CGG + contig400end:15662-15681 MsG0080048687.01.T02:intron 10.0%
!! ATAAAAACAGATGAAAATAA+AGG + contig400end:18596-18615 MsG0080048687.01.T01:intron 15.0%
!! ATCTAAATAATAAAAAAAGG+AGG - contig400end:17185-17204 MsG0080048687.01.T01:intergenic 15.0%
!! CTAATCTAAATAATGAAAAA+AGG + contig400end:18209-18228 MsG0080048687.01.T01:intron 15.0%
!! TAATTCAAATGAATTGTATT+CGG + contig400end:16261-16280 MsG0080048687.01.T01:intron 15.0%
!! TATGAATAATTGACAAATAT+CGG - contig400end:16188-16207 MsG0080048687.01.T01:intergenic 15.0%
!!! ATTGAAAAACAGTAATTTTA+TGG - contig400end:18884-18903 MsG0080048687.01.T01:intergenic 15.0%
!!! GTTTTTTCATTATTTGTTTT+TGG + contig400end:15746-15765 MsG0080048687.01.T01:five_prime_UTR 15.0%
!!! TAAGTTCTAATTTTTTTATG+GGG - contig400end:18243-18262 MsG0080048687.01.T02:intergenic 15.0%
!!! TATAATAAAGATTTTGTTTG+CGG + contig400end:16231-16250 MsG0080048687.01.T01:intron 15.0%
!!! TGAATTGAGTATATTTTTTT+GGG + contig400end:15723-15742 MsG0080048687.01.T01:five_prime_UTR 15.0%
!!! TGTTTTTATTTGATTTGTTT+AGG + contig400end:16033-16052 MsG0080048687.01.T01:intron 15.0%
!!! TTGCTATTACAAAAAAAAAA+AGG - contig400end:17275-17294 MsG0080048687.01.T01:intergenic 15.0%
!!! TTTCATTATTTATTTTTAGC+GGG + contig400end:15663-15682 MsG0080048687.01.T02:intron 15.0%
!!! TTTTATAAATTCCATTTAGT+TGG - contig400end:18435-18454 MsG0080048687.01.T01:intergenic 15.0%
!! AATTCTAACCCAAAAAAATT+TGG + contig400end:18132-18151 MsG0080048687.01.T01:intron 20.0%
!! ACAGACACAAAATTAAAATT+TGG - contig400end:16310-16329 MsG0080048687.01.T01:intergenic 20.0%
!! ATAAACATAAAAGCAAATTC+AGG - contig400end:15585-15604 MsG0080048687.01.T01:intergenic 20.0%
!! ATCTAAATAATGAAAAAAGG+AGG + contig400end:18212-18231 MsG0080048687.01.T01:intron 20.0%
!! CAAAAAAATATACTCAATTC+AGG - contig400end:15724-15743 MsG0080048687.01.T01:intergenic 20.0%
!! CATATAAAATTGTAGCAAAA+GGG + contig400end:18490-18509 MsG0080048687.01.T01:intron 20.0%
!! TACAAAAAAAGGGATAAAAA+AGG + contig400end:18106-18125 MsG0080048687.01.T01:intron 20.0%
!! TGGATAAAAAATTAGACTAT+TGG - contig400end:16992-17011 MsG0080048687.01.T01:intergenic 20.0%
!!! AAAGTTTGTTTTCACTATTT+TGG - contig400end:17012-17031 MsG0080048687.01.T01:intergenic 20.0%
!!! CTGAATTGAGTATATTTTTT+TGG + contig400end:15722-15741 MsG0080048687.01.T01:five_prime_UTR 20.0%
!!! GAATTGAGTATATTTTTTTG+GGG + contig400end:15724-15743 MsG0080048687.01.T01:five_prime_UTR 20.0%
!!! TACTTGCTATTACAAAAAAA+GGG + contig400end:18096-18115 MsG0080048687.01.T01:intron 20.0%
!!! TATGTTTTTTTGTTCTTCAT+AGG + contig400end:15973-15992 MsG0080048687.01.T01:intron 20.0%
!!! TTTTGGTGATTTATGTTTTT+GGG + contig400end:15638-15657 MsG0080048687.01.T02:intron 20.0%
!!! TTTTTGGTGATTTATGTTTT+TGG + contig400end:15637-15656 MsG0080048687.01.T02:intron 20.0%
! AAACTTGCACAATTTCAATA+AGG + contig400end:17518-17537 MsG0080048687.01.T01:intron 25.0%
! AAATTCAGGAAGGTAAATTA+CGG - contig400end:15571-15590 MsG0080048687.01.T01:intergenic 25.0%
! AATAGACGAAAAGATAAGAA+CGG - contig400end:16769-16788 MsG0080048687.01.T01:intergenic 25.0%
! ATAATAAAAAAAGGAGGATG+AGG - contig400end:17179-17198 MsG0080048687.01.T01:intergenic 25.0%
! ATAATTGACAAATATCGGAA+TGG - contig400end:16183-16202 MsG0080048687.01.T01:intergenic 25.0%
! ATGAAAATAAAGGAGAAAGA+AGG + contig400end:18606-18625 MsG0080048687.01.T01:intron 25.0%
! CCATATAAAATTGTAGCAAA+AGG + contig400end:18489-18508 MsG0080048687.01.T01:intron 25.0%
! GTAGAACTAGAAGAAAAAAA+TGG + contig400end:15862-15881 MsG0080048687.01.T01:exon 25.0%
! TAATTGACAAATATCGGAAT+GGG - contig400end:16182-16201 MsG0080048687.01.T01:intergenic 25.0%
! TCAAATTATGCTTACTATTG+TGG + contig400end:19093-19112 MsG0080048687.01.T01:CDS 25.0%
! TGTTGTATACTATTCTTCAA+GGG + contig400end:16873-16892 MsG0080048687.01.T01:intron 25.0%
! TTGATTTCCATTGAAAAACT+CGG + contig400end:18523-18542 MsG0080048687.01.T01:intron 25.0%
! TTGTAGTGATTTATGTTGTT+GGG + contig400end:15797-15816 MsG0080048687.01.T01:five_prime_UTR 25.0%
! TTGTTGTATACTATTCTTCA+AGG + contig400end:16872-16891 MsG0080048687.01.T01:intron 25.0%
! TTTGTAGTGATTTATGTTGT+TGG + contig400end:15796-15815 MsG0080048687.01.T01:five_prime_UTR 25.0%
!! CCTTTTGCTACAATTTTATA+TGG - contig400end:18492-18511 MsG0080048687.01.T01:intergenic 25.0%
!! TTTTGTAATAGCAAGTACAT+GGG + contig400end:17281-17300 MsG0080048687.01.T01:intron 25.0%
!! TTTTGTAATAGCAAGTACAT+GGG - contig400end:17300-17281 MsG0080048687.01.T01:intergenic 25.0%
!! TTTTTGTAATAGCAAGTACA+TGG + contig400end:17280-17299 MsG0080048687.01.T01:intron 25.0%
!! TTTTTGTAATAGCAAGTACA+TGG - contig400end:17299-17280 MsG0080048687.01.T01:intergenic 25.0%
!!! ACTCATAATTTGTTGAAATC+TGG + contig400end:16563-16582 MsG0080048687.01.T01:intron 25.0%
!!! AGGATGATACCAAATTTTTT+TGG - contig400end:18144-18163 MsG0080048687.01.T01:intergenic 25.0%
!!! ATAATTTGTTGAAATCTGGT+TGG + contig400end:16567-16586 MsG0080048687.01.T01:intron 25.0%
!!! GGATGATACCAAATTTTTTT+GGG - contig400end:18143-18162 MsG0080048687.01.T01:intergenic 25.0%
!!! GTACTTGCTATTACAAAAAA+AGG + contig400end:18095-18114 MsG0080048687.01.T01:intron 25.0%
!!! TTTTAATTTTGTGTCTGTAG+TGG + contig400end:16312-16331 MsG0080048687.01.T01:intron 25.0%
AAACTTGCACAATTTCAACA+AGG - contig400end:17859-17878 MsG0080048686.01.T01:intergenic 30.0%
ACATAAAAGCAAATTCAGGA+AGG - contig400end:15581-15600 MsG0080048687.01.T01:intergenic 30.0%
ACATTCCCATATTCATATGA+TGG - contig400end:16110-16129 MsG0080048687.01.T01:intergenic 30.0%
AGAAGAAAGAAACACAAAGA+GGG - contig400end:17080-17099 MsG0080048687.01.T01:intergenic 30.0%
AGTCACATTCTATAACCTTA+AGG + contig400end:15886-15905 MsG0080048687.01.T01:CDS 30.0%
CACGTAAAAATGTTGTAGAA+GGG + contig400end:18390-18409 MsG0080048687.01.T01:intron 30.0%
CAGTTCCATCATATGAATAT+GGG + contig400end:16102-16121 MsG0080048687.01.T01:CDS 30.0%
CCAAATTGGATTACTATACT+GGG - contig400end:15539-15558 MsG0080048687.01.T01:intergenic 30.0%
GTTAACTTCAAAAGGAGTTT+GGG + contig400end:17495-17514 MsG0080048687.01.T01:intron 30.0%
GTTAACTTCAAAAGGAGTTT+GGG - contig400end:17514-17495 MsG0080048687.01.T01:intergenic 30.0%
TACGGATTTATGTTCCAAAT+TGG - contig400end:15553-15572 MsG0080048687.01.T01:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG + contig400end:16101-16120 MsG0080048687.01.T01:CDS 30.0%
TCCAAATTGGATTACTATAC+TGG - contig400end:15540-15559 MsG0080048687.01.T01:intergenic 30.0%
TTTGATCTGTCTCAAAGAAT+GGG + contig400end:18030-18049 MsG0080048687.01.T01:intron 30.0%
! CTTACTTTCTTTCTTTTTGC+CGG - contig400end:16526-16545 MsG0080048687.01.T01:intergenic 30.0%
! TATTCATATGATGGAACTGA+TGG - contig400end:16101-16120 MsG0080048687.01.T01:intergenic 30.0%
! TTTTGATCTGTCTCAAAGAA+TGG + contig400end:18029-18048 MsG0080048687.01.T01:intron 30.0%
!! ACAAGTTTGTTTTCCCTATT+GGG + contig400end:16934-16953 MsG0080048687.01.T01:intron 30.0%
!! AGCAAATCCTATTTCTTTTC+TGG - contig400end:17568-17587 MsG0080048687.01.T01:intergenic 30.0%
!! TTTGATTTGTCTCAGAGAAT+GGG - contig400end:17344-17363 MsG0080048687.01.T01:intergenic 30.0%
!!! CCTTTTGAAGTTAACCATTT+CGG + contig400end:17887-17906 MsG0080048687.01.T01:intron 30.0%
!!! CCTTTTGAAGTTAACCATTT+CGG - contig400end:17906-17887 MsG0080048687.01.T01:intergenic 30.0%
!!! GGTTTTGATTGGATCATTTA+TGG - contig400end:17441-17460 MsG0080048687.01.T01:intergenic 30.0%
!!! TATACTGGGTTTTGAGAATT+AGG - contig400end:15525-15544 MsG0080048687.01.T01:intergenic 30.0%
!!! TTTTGATTTGTCTCAGAGAA+TGG - contig400end:17345-17364 MsG0080048687.01.T01:intergenic 30.0%
AAAAAAAGGAGGATGAGGTT+GGG - contig400end:17174-17193 MsG0080048686.01.T01:intergenic 35.0%
AAGAAGGATAGATCCAAATC+AGG + contig400end:18622-18641 MsG0080048687.01.T01:intron 35.0%
AAGAGATGAGATAGGATATG+AGG + contig400end:17959-17978 MsG0080048687.01.T01:intron 35.0%
AAGGCAACCAGAAAAGAAAT+AGG + contig400end:17558-17577 MsG0080048687.01.T01:intron 35.0%
AGAAGAAAGAAACACAGAGA+GGG + contig400end:18800-18819 MsG0080048687.01.T01:intron 35.0%
AGAATTAGGATTGAGGAAGA+AGG - contig400end:15511-15530 MsG0080048687.01.T01:intergenic 35.0%
ATAGGGAGAAGAGTTTATCA+TGG + contig400end:18741-18760 MsG0080048687.01.T01:intron 35.0%
ATAGGGAGAAGAGTTTATCA+TGG - contig400end:18760-18741 MsG0080048687.01.T01:intergenic 35.0%
ATGAATATGGGAATGTTGCT+AGG + contig400end:16114-16133 MsG0080048687.01.T01:CDS 35.0%
CCACGTAAAAATGTTGTAGA+AGG + contig400end:18389-18408 MsG0080048687.01.T01:intron 35.0%
CCCAGTATAGTAATCCAATT+TGG + contig400end:15536-15555 MsG0080048687.01.T02:intron 35.0%
CCCTAGTCATTAAAATTCAG+CGG + contig400end:17368-17387 MsG0080048687.01.T01:intron 35.0%
CCGAAATGGTTAACTTCAAA+AGG + contig400end:17487-17506 MsG0080048687.01.T01:intron 35.0%
CCGAAATGGTTAACTTCAAA+AGG - contig400end:17506-17487 MsG0080048687.01.T01:intergenic 35.0%
CTATCGGAAAACAACCATTA+TGG - contig400end:18661-18680 MsG0080048687.01.T01:intergenic 35.0%
GAAGAGTTTATCATGGTTGT+TGG + contig400end:18748-18767 MsG0080048687.01.T01:intron 35.0%
GAGAAGAAAGAAACACAAAG+AGG - contig400end:17081-17100 MsG0080048687.01.T01:intergenic 35.0%
GAGAGATTTGTGTGTGAATA+GGG + contig400end:18724-18743 MsG0080048687.01.T01:intron 35.0%
GAGAGATTTGTGTGTGAATA+GGG - contig400end:18743-18724 MsG0080048687.01.T01:intergenic 35.0%
GGTTAACTTCAAAAGGAGTT+TGG + contig400end:17494-17513 MsG0080048687.01.T01:intron 35.0%
GGTTAACTTCAAAAGGAGTT+TGG - contig400end:17513-17494 MsG0080048687.01.T01:intergenic 35.0%
TAAAAAAAGGAGGATGAGGT+TGG - contig400end:17175-17194 MsG0080048687.01.T01:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG + contig400end:15896-15915 MsG0080048687.01.T01:CDS 35.0%
TCTGGTTGGACATCAATTTA+TGG + contig400end:16581-16600 MsG0080048687.01.T01:intron 35.0%
TGAGAGATTTGTGTGTGAAT+AGG + contig400end:18723-18742 MsG0080048687.01.T01:intron 35.0%
TGAGAGATTTGTGTGTGAAT+AGG - contig400end:18742-18723 MsG0080048687.01.T01:intergenic 35.0%
TGGAAAATCATCTGTACTGT+TGG + contig400end:16633-16652 MsG0080048687.01.T01:CDS 35.0%
TGGATCAAGTGAGATATGAT+GGG - contig400end:16972-16991 MsG0080048687.01.T01:intergenic 35.0%
TTGGATCAAGTGAGATATGA+TGG - contig400end:16973-16992 MsG0080048687.01.T01:intergenic 35.0%
! AACATTTTTACGTGGTCGTT+TGG - contig400end:18384-18403 MsG0080048687.01.T01:intergenic 35.0%
! AGATGATTTTCCACCTAGAA+TGG - contig400end:16626-16645 MsG0080048687.01.T01:intergenic 35.0%
! CCCTAGTCATTTAAAATCAG+CGG - contig400end:18005-18024 MsG0080048687.01.T01:intergenic 35.0%
! CCTTCTACAACATTTTTACG+TGG - contig400end:18392-18411 MsG0080048687.01.T01:intergenic 35.0%
! CTGGTGCACAAATAAGATTT+TGG + contig400end:16901-16920 MsG0080048687.01.T01:intron 35.0%
!! ACCGCTGAATTTTAATGACT+AGG - contig400end:17372-17391 MsG0080048687.01.T01:intergenic 35.0%
!! ACTAGATCCGAGTTTTTCAA+TGG - contig400end:18533-18552 MsG0080048687.01.T01:intergenic 35.0%
!! AGCAGATCCTATTTCTTTTC+TGG + contig400end:17809-17828 MsG0080048687.01.T01:intron 35.0%
!! CACAAGTTTGTTTTCCCTAT+TGG + contig400end:16933-16952 MsG0080048687.01.T01:intron 35.0%
!! CATAATGGTTGTTTTCCGAT+AGG + contig400end:18659-18678 MsG0080048687.01.T01:intron 35.0%
!! CCGCTGAATTTTAATGACTA+GGG - contig400end:17371-17390 MsG0080048687.01.T01:intergenic 35.0%
!! GATGACGATGTTGATTTGTT+TGG + contig400end:16441-16460 MsG0080048687.01.T01:CDS 35.0%
!! GTTGTTTGATTTGTGACATG+AGG + contig400end:18689-18708 MsG0080048687.01.T01:intron 35.0%
!! TAATGTCATCCTTTGAAGCT+TGG - contig400end:16061-16080 MsG0080048687.01.T01:intergenic 35.0%
!! TTGATTTGTGACATGAGGTT+GGG + contig400end:18694-18713 MsG0080048687.01.T01:intron 35.0%
!! TTTGATTTGTGACATGAGGT+TGG + contig400end:18693-18712 MsG0080048687.01.T01:intron 35.0%
!!! ACCGCTGATTTTAAATGACT+AGG + contig400end:18001-18020 MsG0080048687.01.T01:intron 35.0%
!!! CCGCTGATTTTAAATGACTA+GGG + contig400end:18002-18021 MsG0080048687.01.T01:intron 35.0%
!!! GGTTTTGAGAATTAGGATTG+AGG - contig400end:15518-15537 MsG0080048687.01.T01:intergenic 35.0%
!!! TTCTTTTCTGGTTGCCTTAT+AGG - contig400end:17556-17575 MsG0080048687.01.T01:intergenic 35.0%
!!! TTTTCTGCTGATTCCATTCT+AGG + contig400end:16610-16629 MsG0080048687.01.T01:intron 35.0%
AAGAGATGAGAGAGAGGATT+AGG - contig400end:17463-17482 MsG0080048687.01.T01:intergenic 40.0%
AAGGCAGCCAGAAAAGAAAT+AGG - contig400end:17819-17838 MsG0080048687.01.T01:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG + contig400end:16117-16136 MsG0080048687.01.T01:CDS 40.0%
ACAGATCTGTGCCAACTAAA+TGG + contig400end:18421-18440 MsG0080048687.01.T01:intron 40.0%
ACGAAAGAGATGAGAGGATT+AGG + contig400end:17910-17929 MsG0080048687.01.T01:intron 40.0%
AGAAAGAAACACAAAGAGGG+AGG - contig400end:17077-17096 MsG0080048687.01.T01:intergenic 40.0%
AGAGACACACTTTCCTGATT+TGG - contig400end:18638-18657 MsG0080048687.01.T01:intergenic 40.0%
AGAGATGAGAGAGAGGATTA+GGG - contig400end:17462-17481 MsG0080048687.01.T01:intergenic 40.0%
ATCCTCAACCATATTGTCGA+CGG - contig400end:19131-19150 MsG0080048687.01.T01:intergenic 40.0%
ATGGACGAAAGAGATGAGAT+AGG + contig400end:17951-17970 MsG0080048687.01.T01:intron 40.0%
CAAACAACACCACAACCTAT+CGG - contig400end:18677-18696 MsG0080048687.01.T01:intergenic 40.0%
CATTGATGCACAAGGATTTG+GGG + contig400end:17641-17660 MsG0080048687.01.T01:intron 40.0%
CATTGATGCACAAGGATTTG+GGG - contig400end:17660-17641 MsG0080048687.01.T01:intergenic 40.0%
CGAAAGAGATGAGAGGATTA+GGG + contig400end:17911-17930 MsG0080048687.01.T01:intron 40.0%
GAAAGAAACACAAAGAGGGA+GGG - contig400end:17076-17095 MsG0080048687.01.T01:intergenic 40.0%
GAAGAGTTTATCATGGTTGC+TGG - contig400end:17120-17139 MsG0080048687.01.T01:intergenic 40.0%
GAGAAGAAAGAAACACAGAG+AGG + contig400end:18799-18818 MsG0080048687.01.T01:intron 40.0%
GAGTTTATCATGGTTGTTGG+AGG + contig400end:18751-18770 MsG0080048687.01.T01:intron 40.0%
GGATCAAGTGAGATATGATG+GGG - contig400end:16971-16990 MsG0080048687.01.T01:intergenic 40.0%
GGCTTGAGATTAACCCAATA+GGG - contig400end:16950-16969 MsG0080048687.01.T01:intergenic 40.0%
GGTTTCGATTGGATCAGTTA+TGG + contig400end:17932-17951 MsG0080048687.01.T01:intron 40.0%
GTTTAGGTACCAAGCTTCAA+AGG + contig400end:16049-16068 MsG0080048687.01.T01:intron 40.0%
TAATAGCAAGTACATGGGCT+GGG + contig400end:17286-17305 MsG0080048687.01.T01:intron 40.0%
TCTCTGCAATACGAAGACTA+AGG - contig400end:18945-18964 MsG0080048687.01.T01:intergenic 40.0%
TGAGATCTGTTCAGTTGGAA+GGG + contig400end:16707-16726 MsG0080048687.01.T01:CDS 40.0%
TTCTTCGAGCTTCTTCATGT+CGG - contig400end:16683-16702 MsG0080048687.01.T01:intergenic 40.0%
! AAGAGATGAGAGAGAGTATG+AGG - contig400end:17414-17433 MsG0080048687.01.T01:intergenic 40.0%
! GAAAGTGTGTCTCTCCATAA+TGG + contig400end:18644-18663 MsG0080048687.01.T01:intron 40.0%
! GCATTGATGCACAAGGATTT+GGG + contig400end:17640-17659 MsG0080048687.01.T01:intron 40.0%
! GCATTGATGCACAAGGATTT+GGG - contig400end:17659-17640 MsG0080048687.01.T01:intergenic 40.0%
! TCTTGTTTCCGTCGACAATA+TGG + contig400end:19120-19139 MsG0080048687.01.T01:CDS 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG + contig400end:16455-16474 MsG0080048687.01.T01:CDS 40.0%
!! GAGAGGATTAGGGTTTTGAT+TGG - contig400end:17452-17471 MsG0080048687.01.T01:intergenic 40.0%
!!! GTTGTTGGAGGTTTTGTTGT+TGG + contig400end:18763-18782 MsG0080048687.01.T01:intron 40.0%
!!! TTCTTTTCTGGCTGCCTTAT+AGG + contig400end:17821-17840 MsG0080048687.01.T01:intron 40.0%
AAACTTGTCCCTGTTGGGTA+CGG + contig400end:19058-19077 MsG0080048687.01.T01:CDS 45.0%
ACTCTGGACATACTCGTTGA+TGG - contig400end:19170-19189 MsG0080048687.01.T01:intergenic 45.0%
ACTGTTGGATGTGAAGCCAT+GGG + contig400end:16648-16667 MsG0080048687.01.T01:CDS 45.0%
AGAAAGAAACACAGAGAGGG+AGG + contig400end:18803-18822 MsG0080048687.01.T01:intron 45.0%
AGAGACTGAGGAAGAGAAGA+AGG + contig400end:16467-16486 MsG0080048687.01.T01:CDS 45.0%
AGATGCAGTTGGGTATGCAA+CGG + contig400end:17676-17695 MsG0080048687.01.T01:intron 45.0%
AGCAGTGAGATCTGTTCAGT+TGG + contig400end:16702-16721 MsG0080048687.01.T01:CDS 45.0%
AGCCACAAGAGAAGATTCCA+CGG - contig400end:16364-16383 MsG0080048687.01.T01:intergenic 45.0%
AGGTTTACCTGTGTTGAGAG+AGG - contig400end:15491-15510 MsG0080048687.01.T01:intergenic 45.0%
ATCTGTCTCAAAGAATGGGC+CGG + contig400end:18034-18053 MsG0080048687.01.T01:intron 45.0%
ATTTGTCTCAGAGAATGGGC+CGG - contig400end:17340-17359 MsG0080048687.01.T01:intergenic 45.0%
CTCATCTCTTTCGTCCGAAA+TGG + contig400end:17473-17492 MsG0080048687.01.T01:intron 45.0%
CTCATCTCTTTCGTCCGAAA+TGG - contig400end:17492-17473 MsG0080048687.01.T01:intergenic 45.0%
CTCTGGACATACTCGTTGAT+GGG - contig400end:19169-19188 MsG0080048687.01.T01:intergenic 45.0%
GAAAGAAACACAGAGAGGGA+GGG + contig400end:18804-18823 MsG0080048687.01.T01:intron 45.0%
GAGAGGATTAGGGTTTCGAT+TGG + contig400end:17921-17940 MsG0080048687.01.T01:intron 45.0%
GAGTTTATCATGGTTGCTGG+AGG - contig400end:17117-17136 MsG0080048687.01.T01:intergenic 45.0%
GGGCTTGAGATTAACCCAAT+AGG - contig400end:16951-16970 MsG0080048687.01.T01:intergenic 45.0%
GTAATAGCAAGTACATGGGC+CGG - contig400end:17304-17285 MsG0080048687.01.T01:intergenic 45.0%
GTAATAGCAAGTACATGGGC+TGG + contig400end:17285-17304 MsG0080048687.01.T01:intron 45.0%
GTGAGATCTGTTCAGTTGGA+AGG + contig400end:16706-16725 MsG0080048687.01.T01:CDS 45.0%
TAATAGCAAGTACATGGGCC+GGG - contig400end:18088-18107 MsG0080048687.01.T01:intergenic 45.0%
TACTGTTGGATGTGAAGCCA+TGG + contig400end:16647-16666 MsG0080048687.01.T01:CDS 45.0%
TCAAGCCAGATTCAGCCTTA+AGG - contig400end:15904-15923 MsG0080048687.01.T01:intergenic 45.0%
TCACACGCAGTTACATCACT+GGG + contig400end:15945-15964 MsG0080048687.01.T01:CDS 45.0%
TCAGTTGGAAGGGTTGTTCT+GGG + contig400end:16717-16736 MsG0080048687.01.T01:CDS 45.0%
TCCTCCAGTTTCTGACACAA+AGG + contig400end:16401-16420 MsG0080048687.01.T01:CDS 45.0%
TCTCACATCACGCTTAGCAT+TGG + contig400end:17773-17792 MsG0080048687.01.T01:intron 45.0%
TCTTGATACCGTACCCAACA+GGG - contig400end:19069-19088 MsG0080048687.01.T01:intergenic 45.0%
TGATGTAACTGCGTGTGAGA+AGG - contig400end:15943-15962 MsG0080048687.01.T01:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG + contig400end:19180-19199 MsG0080048687.01.T01:CDS 45.0%
TGTGTCTGTAGTGGTGTTTC+TGG + contig400end:16321-16340 MsG0080048687.01.T01:intron 45.0%
TTCAGTTGGAAGGGTTGTTC+TGG + contig400end:16716-16735 MsG0080048687.01.T01:CDS 45.0%
TTCCGTCGACAATATGGTTG+AGG + contig400end:19126-19145 MsG0080048687.01.T01:CDS 45.0%
TTCTTGATACCGTACCCAAC+AGG - contig400end:19070-19089 MsG0080048687.01.T01:intergenic 45.0%
TTTCGGACGAAAGAGATGAG+AGG + contig400end:17904-17923 MsG0080048687.01.T01:intron 45.0%
TTTGCAACACCAGATGCAGT+TGG - contig400end:17712-17731 MsG0080048687.01.T01:intergenic 45.0%
! CTATTCTTCAAGGGCATGTC+TGG + contig400end:16882-16901 MsG0080048687.01.T01:intron 45.0%
!! ATGTCGGTTTCATCATCCCA+TGG - contig400end:16667-16686 MsG0080048687.01.T01:intergenic 45.0%
!! GGCATTGATGCACAAGGATT+TGG + contig400end:17639-17658 MsG0080048687.01.T01:intron 45.0%
!! GGCATTGATGCACAAGGATT+TGG - contig400end:17658-17639 MsG0080048687.01.T01:intergenic 45.0%
!! GGTTGTTTTCCGATAGGTTG+TGG + contig400end:18665-18684 MsG0080048687.01.T01:intron 45.0%
!! TCTGCTGATTCCATTCTAGG+TGG + contig400end:16613-16632 MsG0080048687.01.T01:intron 45.0%
!! TGTAGTGGTGTTTCTGGTGA+GGG + contig400end:16327-16346 MsG0080048687.01.T01:intron 45.0%
!!! TAAAAAAAAATTGAATTTTT+TGG + contig400end:15621-15640 MsG0080048687.01.T02:intron 5.0%
AACACCAGATGCAGTTGGCA+TGG - contig400end:17707-17726 MsG0080048687.01.T01:intergenic 50.0%
AATCTCGCCTCTCTCAACAC+AGG + contig400end:15481-15500 MsG0080048687.01.T02:five_prime_UTR 50.0%
ACAGCCAAACTTGTCCCTGT+TGG + contig400end:19052-19071 MsG0080048687.01.T01:CDS 50.0%
ACGCAGTTACATCACTGGGT+AGG + contig400end:15949-15968 MsG0080048687.01.T01:intron 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG + contig400end:16481-16500 MsG0080048687.01.T01:CDS 50.0%
AGGCCACAATGTCACAACTC+TGG - contig400end:19186-19205 MsG0080048687.01.T01:intergenic 50.0%
CACCGTGGAATCTTCTCTTG+TGG + contig400end:16359-16378 MsG0080048687.01.T01:CDS 50.0%
CAGCCAAACTTGTCCCTGTT+GGG + contig400end:19053-19072 MsG0080048687.01.T01:CDS 50.0%
CAGTTGGAAGGGTTGTTCTG+GGG + contig400end:16718-16737 MsG0080048687.01.T01:CDS 50.0%
CTCACACGCAGTTACATCAC+TGG + contig400end:15944-15963 MsG0080048687.01.T01:CDS 50.0%
CTCCGGATTCTACTATGACC+CGG + contig400end:18067-18086 MsG0080048687.01.T01:intron 50.0%
GCCTTTGTGTCAGAAACTGG+AGG - contig400end:16405-16424 MsG0080048687.01.T01:intergenic 50.0%
GCGTGATGTGAGACATGCAA+AGG - contig400end:17766-17785 MsG0080048687.01.T01:intergenic 50.0%
GCTGCCTTTGTGTCAGAAAC+TGG - contig400end:16408-16427 MsG0080048687.01.T01:intergenic 50.0%
GGACGAAAGAGATGAGAGAG+AGG - contig400end:17420-17439 MsG0080048687.01.T01:intergenic 50.0%
GGCTGGGTCATAGTAGAATC+CGG + contig400end:17302-17321 MsG0080048687.01.T01:intron 50.0%
GTACCCAACAGGGACAAGTT+TGG - contig400end:19059-19078 MsG0080048687.01.T01:intergenic 50.0%
GTGAGACATGCAAAGGATGC+TGG + contig400end:17618-17637 MsG0080048687.01.T01:intron 50.0%
GTGAGACATGCAAAGGATGC+TGG - contig400end:17637-17618 MsG0080048687.01.T01:intergenic 50.0%
GTTGAGAGAGGCGAGATTGA+AGG - contig400end:15479-15498 MsG0080048687.01.T01:intergenic 50.0%
GTTGCATACCCAACTGCATC+TGG - contig400end:17677-17696 MsG0080048687.01.T01:intergenic 50.0%
TCTCACAGCACGCTTAGCAT+TGG - contig400end:17604-17623 MsG0080048687.01.T01:intergenic 50.0%
TCTGTCTCAAAGAATGGGCC+GGG + contig400end:18035-18054 MsG0080048687.01.T01:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG - contig400end:16400-16419 MsG0080048687.01.T01:intergenic 50.0%
TTCTGACACAAAGGCAGCTG+AGG + contig400end:16410-16429 MsG0080048687.01.T01:CDS 50.0%
TTGCAGCACCAGATGCAGTT+GGG + contig400end:17666-17685 MsG0080048687.01.T01:intron 50.0%
TTTGCAGCACCAGATGCAGT+TGG + contig400end:17665-17684 MsG0080048687.01.T01:intron 50.0%
TTTGTCTCAGAGAATGGGCC+GGG - contig400end:17339-17358 MsG0080048687.01.T01:intergenic 50.0%
! AATCCGGAGTGTTCAAGACC+CGG + contig400end:17318-17337 MsG0080048687.01.T01:intron 50.0%
! AATCCGGAGTGTTCAAGACC+CGG - contig400end:17337-17318 MsG0080048687.01.T01:intergenic 50.0%
! CACAAGTGAGACGAGTGTTG+TGG - contig400end:18859-18878 MsG0080048687.01.T01:intergenic 50.0%
! CTTTTTGCCGGATGCCTTCA+CGG - contig400end:16514-16533 MsG0080048687.01.T01:intergenic 50.0%
! GGAGCTTGCTTCTGCCTATA+AGG + contig400end:17539-17558 MsG0080048687.01.T01:intron 50.0%
! GGAGCTTGCTTCTGCCTATA+AGG - contig400end:17558-17539 MsG0080048687.01.T01:intergenic 50.0%
!! CTGTAGTGGTGTTTCTGGTG+AGG + contig400end:16326-16345 MsG0080048687.01.T01:intron 50.0%
!! GATGCTGGCATTGATGCACA+AGG + contig400end:17633-17652 MsG0080048687.01.T01:intron 50.0%
!! GATGCTGGCATTGATGCACA+AGG - contig400end:17652-17633 MsG0080048687.01.T01:intergenic 50.0%
CGTTCCATGCCAACTGCATC+TGG + contig400end:17700-17719 MsG0080048687.01.T01:intron 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG + contig400end:16482-16501 MsG0080048687.01.T01:CDS 55.0%
GCGTGCTGTGAGACATGCAA+AGG + contig400end:17611-17630 MsG0080048687.01.T01:intron 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG + contig400end:16476-16495 MsG0080048687.01.T01:CDS 55.0%
GGCCGGGTCATAGTAGAATC+CGG - contig400end:18072-18091 MsG0080048687.01.T01:intergenic 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG + contig400end:16333-16352 MsG0080048687.01.T01:CDS 55.0%
! GTGAGACGAGTGTTGTGGCG+CGG - contig400end:18854-18873 MsG0080048687.01.T01:intergenic 60.0%
!! TGAGGGATCTGGTGTCACCG+TGG + contig400end:16344-16363 MsG0080048687.01.T01:CDS 60.0%
GGGCCGGGTCTTGAACACTC+CGG + contig400end:18050-18069 MsG0080048687.01.T01:intron 65.0%
GGGCCGGGTCTTGAACACTC+CGG - contig400end:18069-18050 MsG0080048687.01.T01:intergenic 65.0%
!! GCAGCAGCCGTGAAGGCATC+CGG + contig400end:16504-16523 MsG0080048687.01.T01:CDS 65.0%
GGAACGGGCAGCAGCCGTGA+AGG + contig400end:16497-16516 MsG0080048687.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
contig400end gene 15444 19216 15444 ID=MsG0080048687.01;Name=MsG0080048687.01
contig400end mRNA 15709 19216 15709 ID=MsG0080048687.01.T01;Parent=MsG0080048687.01;Name=MsG0080048687.01.T01;_AED=0.45;_eAED=0.47;_QI=151|0.8|0.66|1|0.6|0.33|6|0|263
contig400end exon 15847 15966 15847 ID=MsG0080048687.01.T01:exon:15661;Parent=MsG0080048687.01.T01
contig400end exon 15709 15825 15709 ID=MsG0080048687.01.T01:exon:15660;Parent=MsG0080048687.01.T01
contig400end five_prime_UTR 15709 15825 15709 ID=MsG0080048687.01.T01:five_prime_utr;Parent=MsG0080048687.01.T01
contig400end five_prime_UTR 15847 15880 15847 ID=MsG0080048687.01.T01:five_prime_utr;Parent=MsG0080048687.01.T01
contig400end CDS 15881 15966 15881 ID=MsG0080048687.01.T01:cds;Parent=MsG0080048687.01.T01
contig400end CDS 16055 16171 16055 ID=MsG0080048687.01.T01:cds;Parent=MsG0080048687.01.T01
contig400end CDS 16332 16540 16332 ID=MsG0080048687.01.T01:cds;Parent=MsG0080048687.01.T01
contig400end CDS 16632 16831 16632 ID=MsG0080048687.01.T01:cds;Parent=MsG0080048687.01.T01
contig400end CDS 19040 19216 19040 ID=MsG0080048687.01.T01:cds;Parent=MsG0080048687.01.T01
contig400end mRNA 15444 19216 15444 ID=MsG0080048687.01.T02;Parent=MsG0080048687.01;Name=MsG0080048687.01.T02;_AED=0.46;_eAED=0.47;_QI=74|0.8|0.66|1|0.6|0.33|6|0|263
contig400end exon 15866 15966 15866 ID=MsG0080048687.01.T02:exon:15667;Parent=MsG0080048687.01.T02
contig400end exon 15444 15502 15444 ID=MsG0080048687.01.T02:exon:15666;Parent=MsG0080048687.01.T02
contig400end five_prime_UTR 15444 15502 15444 ID=MsG0080048687.01.T02:five_prime_utr;Parent=MsG0080048687.01.T02
contig400end five_prime_UTR 15866 15880 15866 ID=MsG0080048687.01.T02:five_prime_utr;Parent=MsG0080048687.01.T02
contig400end CDS 15881 15966 15881 ID=MsG0080048687.01.T02:cds;Parent=MsG0080048687.01.T02
contig400end CDS 16055 16171 16055 ID=MsG0080048687.01.T02:cds;Parent=MsG0080048687.01.T02
contig400end CDS 16332 16540 16332 ID=MsG0080048687.01.T02:cds;Parent=MsG0080048687.01.T02
contig400end CDS 16632 16831 16632 ID=MsG0080048687.01.T02:cds;Parent=MsG0080048687.01.T02
contig400end CDS 19040 19216 19040 ID=MsG0080048687.01.T02:cds;Parent=MsG0080048687.01.T02
Gene Sequence

>MsG0080048687.01.T02

ATGGCAGTCACATTCTATAACCTTAAGGCTGAATCTGGCTTGAAGAAGCTTGATGAGTACCTTCTCACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATTACTGTCTATTCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACCGTGGAATCTTCTCTTGTGGCTGAAGATGTTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCAGCTGAGGATGATGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCCGGCAAAAAGAAAGAAAGTGGAAAATCATCTGTACTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTCTGGGGTGCATGTATGTTATTTTTCTCTTTACCGTTCTTATCTTTTCGTCTATTTATATTTACACATTTCAAATTGTTGATTGCTTCTATTCTGATTTTTATCACTGTCACAGCCAAACTTGTCCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTCGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAACGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAACAAAATC

>MsG0080048687.01.T01

ATGGCAGTCACATTCTATAACCTTAAGGCTGAATCTGGCTTGAAGAAGCTTGATGAGTACCTTCTCACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATTACTGTCTATTCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACCGTGGAATCTTCTCTTGTGGCTGAAGATGTTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCAGCTGAGGATGATGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCCGGCAAAAAGAAAGAAAGTGGAAAATCATCTGTACTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTCTGGGGTGCATGTATGTTATTTTTCTCTTTACCGTTCTTATCTTTTCGTCTATTTATATTTACACATTTCAAATTGTTGATTGCTTCTATTCTGATTTTTATCACTGTCACAGCCAAACTTGTCCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTCGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAACGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAACAAAATC

Protein sequence

>MsG0080048687.01.T02

MAVTFYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYSALPSVPSYEYGNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEDVVATPPVSDTKAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGACMLFFSLPFLSFRLFIFTHFKLLIASILIFITVTAKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI

>MsG0080048687.01.T01

MAVTFYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYSALPSVPSYEYGNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEDVVATPPVSDTKAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGACMLFFSLPFLSFRLFIFTHFKLLIASILIFITVTAKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI