AlfalfaGEDB | MsG0280009253.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009253.01

KEGG: K00660
GO: GO:0003824 GO:0008152 GO:0009058 GO:0016746 GO:0016844
PFAM: PF00195 PF02797 PF03088

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009253.01.T01	XP_003595645.1	97.158	387	11	0	1	387	1	387	0	782

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009253.01.T01	O23882	88.144	388	46	0	1	388	1	388	0	725

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009253.01.T01	G7IQL2	97.158	387	11	0	1	387	1	387	0.0	782

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048134.01	MsG0280009253.01	0.830641	2.619758e-55	2.776574e-52
MsG0080048509.01	MsG0280009253.01	0.819705	1.009414e-52	7.825827e-50
MsG0180000029.01	MsG0280009253.01	0.800661	1.298255e-48	6.079352e-46
MsG0180000367.01	MsG0280009253.01	0.820254	7.558963e-53	5.950601e-50
MsG0180000399.01	MsG0280009253.01	0.804678	1.924629e-49	9.985240e-47
MsG0180001079.01	MsG0280009253.01	0.802399	5.715010e-49	2.796833e-46
MsG0180001513.01	MsG0280009253.01	0.809707	1.656851e-50	9.797719e-48
MsG0180001515.01	MsG0280009253.01	0.815585	8.573262e-52	5.934737e-49
MsG0180002808.01	MsG0280009253.01	0.805527	1.278886e-49	6.781239e-47
MsG0180003237.01	MsG0280009253.01	0.822163	2.744351e-53	2.278933e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MsG0280009253.01.T01	MTR_2g058470	97.158	387	11	1	387	1	387	782
MsG0280009253.01.T01	MTR_5g007760	88.114	387	46	1	387	1	387	723
MsG0280009253.01.T01	MTR_5g007713	87.855	387	47	1	387	1	387	723
MsG0280009253.01.T01	MTR_5g007717	87.339	387	49	1	387	1	387	721
MsG0280009253.01.T01	MTR_1g098140	87.597	387	48	1	387	1	387	718
MsG0280009253.01.T01	MTR_7g016820	87.339	387	49	1	387	1	387	718
MsG0280009253.01.T01	MTR_5g007730	87.339	387	49	1	387	1	387	717
MsG0280009253.01.T01	MTR_1g097910	87.597	387	48	1	387	1	387	715
MsG0280009253.01.T01	MTR_7g016720	87.339	387	49	1	387	1	387	715
MsG0280009253.01.T01	MTR_1g097935	87.339	387	49	1	387	1	387	714

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009253.01.T01	AT5G13930	76.623	385	89	1	4	387	9	393	0.0	631
MsG0280009253.01.T01	AT4G34850	42.857	371	208	3	15	383	18	386	5.65e-93	295
MsG0280009253.01.T01	AT4G00040	39.541	392	225	6	1	387	1	385	2.20e-90	288
MsG0280009253.01.T01	AT1G02050	40.476	378	215	5	15	389	24	394	6.05e-84	271
MsG0280009253.01.T01	AT4G34850	42.453	318	180	2	72	387	1	317	2.72e-78	254
MsG0280009253.01.T01	AT1G74000	41.424	309	172	5	415	722	29	329	4.61e-73	240
MsG0280009253.01.T01	AT1G74020	41.456	316	172	6	410	722	22	327	1.02e-72	239
MsG0280009253.01.T01	AT1G74010	41.139	316	172	7	410	722	21	325	4.15e-68	227
MsG0280009253.01.T01	AT3G57030	40.952	315	154	6	425	712	55	364	1.11e-64	219
MsG0280009253.01.T01	AT5G22020	38.776	343	178	7	408	722	57	395	1.83e-64	219

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Find 179 sgRNAs with CRISPR-Local

Find 769 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTGGGAGGCCTATG+GGG	0.604258	2:-48743656	MsG0280009253.01.T01:CDS
AAAGAATATTGATAATGCAC+TGG	0.552200	2:-48749507	MsG0280009253.01.T01:CDS
AAATAAACGATTCCACTGTT+AGG	0.427072	2:+48743480	None:intergenic
AACAAATATCAAGATGATGA+AGG	0.528056	2:-48754232	MsG0280009253.01.T01:exon
AACCTATATTTGAGTTAGTT+TGG	0.252829	2:-48749634	MsG0280009253.01.T01:CDS
AACTCCAAGAAACATGTGGG+AGG	0.685654	2:-48743665	MsG0280009253.01.T01:CDS
AAGGATTCAGGGCCTGTTAG+TGG	0.458899	2:+48744519	None:intergenic
AAGTGTGTAATCTTTGACTT+TGG	0.411995	2:+48749977	None:intergenic
AATACAGGAGGTACTGGTGG+TGG	0.595158	2:+48742617	None:intergenic
AATAGTGAAGGAGCTATTTG+TGG	0.543719	2:-48749590	MsG0280009253.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATAAACCATACCAAGT+TGG	-	Chr2:48744463-48744482	MsG0280009253.01.T01:CDS	30.0%
AAACATGACGAAAACTGAAT+GGG	+	Chr2:48751023-48751042	None:intergenic	30.0%
AAATAAACGATTCCACTGTT+AGG	+	Chr2:48753338-48753357	None:intergenic	30.0%
AAATAGATCACATTGAAGGA+GGG	+	Chr2:48750592-48750611	None:intergenic	30.0%
AACGATATGAGGAAAATAAG+AGG	+	Chr2:48744806-48744825	None:intergenic	30.0%
AATCAGAAATACCTAATGGT+TGG	+	Chr2:48747344-48747363	None:intergenic	30.0%
ACATAAAATATGCAAAGTCC+GGG	-	Chr2:48750449-48750468	MsG0280009253.01.T01:intron	30.0%
ACATCATCCAACAGAATAAT+AGG	+	Chr2:48745041-48745060	None:intergenic	30.0%
ACATTAAATTGGATCAGATC+AGG	-	Chr2:48749545-48749564	MsG0280009253.01.T01:CDS	30.0%
ACCAATAGAGTTAAATGCTA+AGG	+	Chr2:48752318-48752337	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	48742457	48754380	48742457	ID=MsG0280009253.01;Name=MsG0280009253.01
Chr2	mRNA	48742457	48754380	48742457	ID=MsG0280009253.01.T01;Parent=MsG0280009253.01;Name=MsG0280009253.01.T01;_AED=0.36;_eAED=0.36;_QI=139\|0.2\|0.16\|0.83\|1\|1\|6\|0\|722
Chr2	exon	48742457	48742946	48742457	ID=MsG0280009253.01.T01:exon:44868;Parent=MsG0280009253.01.T01
Chr2	exon	48743450	48743725	48743450	ID=MsG0280009253.01.T01:exon:44867;Parent=MsG0280009253.01.T01
Chr2	exon	48744405	48744569	48744405	ID=MsG0280009253.01.T01:exon:44866;Parent=MsG0280009253.01.T01
Chr2	exon	48748090	48748171	48748090	ID=MsG0280009253.01.T01:exon:44865;Parent=MsG0280009253.01.T01
Chr2	exon	48749201	48750178	48749201	ID=MsG0280009253.01.T01:exon:44864;Parent=MsG0280009253.01.T01
Chr2	exon	48754064	48754380	48754064	ID=MsG0280009253.01.T01:exon:44863;Parent=MsG0280009253.01.T01
Chr2	five_prime_UTR	48754242	48754380	48754242	ID=MsG0280009253.01.T01:five_prime_utr;Parent=MsG0280009253.01.T01
Chr2	CDS	48754064	48754241	48754064	ID=MsG0280009253.01.T01:cds;Parent=MsG0280009253.01.T01
Chr2	CDS	48749201	48750178	48749201	ID=MsG0280009253.01.T01:cds;Parent=MsG0280009253.01.T01
Chr2	CDS	48748090	48748171	48748090	ID=MsG0280009253.01.T01:cds;Parent=MsG0280009253.01.T01
Chr2	CDS	48744405	48744569	48744405	ID=MsG0280009253.01.T01:cds;Parent=MsG0280009253.01.T01
Chr2	CDS	48743450	48743725	48743450	ID=MsG0280009253.01.T01:cds;Parent=MsG0280009253.01.T01
Chr2	CDS	48742457	48742946	48742457	ID=MsG0280009253.01.T01:cds;Parent=MsG0280009253.01.T01

Gene Sequence

>MsG0280009253.01.T01

ATGATGAAGGTGTCTGAAATTCGCAAGGCTCAAAGGGCAGAAGGCCCTGCAACCATTTTGGCCATTGGCACTGCAAATCCACCAAACTGTTTTGAACAAAGCACATATCCTGATTTCTACTTTAGAGTCACAAACAGTGAGCACAAGATCGAACTCAAAGAAAAATTTCAACGCATTTGTGATAAAACTATGATCAAGAGGAGATACATGTACCTAACCGAAGAGATTTTGAAAGAGAATCCTAACTTGTGCACTTATATGGCACCTTCTTTGGATACTAGGCAAGACATGGTGGTAGTAGAGGCACCAAGACTAGGAAAGGAGGCAGCCGTGAAGGCTATAAAAGAATGGGGCCAACCAAAGTCAAAGATTACACACTTAATATTTTGCACTATAAGTGGTGTAGATATGCCTGGTGCCGATTACCAACTCACAAAACTCTTGGGTCTTCGCCCATATGTGAAAAGGTATATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTACTTCGCTTGGCCAAGGACTTGGCTGAGAACAACAAAGGTTCTCGTGTGTTGGTTGTTTGTTCAGAAGTTACTGCAATCACATTTTGTGGCCCTAGCGATACTCACTTAGACAACCTTGTTGGACAAGCTCTATTTGGAGATGGAGCTGCTGCAGTCATTGTTGGCTCTGACCCAATACCGGAAATTGAGAAACCTATATTTGAGTTAGTTTGGACAGCACAGACAATCGCTCCAAATAGTGAAGGAGCTATTTGTGGCCAACTTCGTGAATTTGGACTATCATTTCATCTTCGTAAGGATGTTCCAGACATTGTCTCAAAGAATATTGATAATGCACTGGTTGAGGCATTCCAACCATTAGGTATTTCTGATTACAACTCAATCTTTTGGATTGCTCACTCTGGTGGACCCGCAATTCTAGACAAAATTGAGAAAAAGTTAGCCTTGAAACCTGAAAAGATGAGTGCCACGAGAAAAATGCTTAGTGAATATGGTAATATGTCAAGTGCATGTGTATTATTCATCTTAGATGAGATGAGAAACAAATCGGCTCAAGATGGACTAAAGACCACAGGAGAAGGGCTTGAATGGGGTGTGTTGTTGAGCTTTGGGCCAGGACTTACCATTGAAACAATTGTTCTCCATAAGATCTTGAGTAGATTTGGAGATCCTTCGGCTTCAAGAAATAATGTTAATGCTTCATCTTGTTGTGACAGTGAGGAGAACGAATTACTTGACAGACTCTATCTTCCATCACCACTAACAGGCCCTGAATCCTTAGCATTTAACTCTATTGGTGAAGGACCTTATACTGGTGTTTCTGATGGAAGAATTCTTAAATATGATGAAGAATGTTCTTGTTTCCTTGAGTTTGCACACATTTCACCGGACAGGGACAATACAATGTGTAATGGCATTTCGGACTTCTCAGAACTCCAAGAAACATGTGGGAGGCCTATGGGGTTGAGTTTCGACTACAACACAGGGGAATTATATATAGCTGATGCTTATTATGGGCTTGTGAAGGTTCCTTATGATGGTGGTGCTGCAACACAGCTTGTTGCTAATAATCTAGAAGGAACCCCTTTTGGGTTTCTTGCTGGTGTGGATGTAGATCCTAACAGTGGAATCGTTTATTTCACCGAAGCCAGCTCACGCTACAAGATCAGGGATCTCCAGAAACTACTAAGGAGAAAAGATCATACGGGAAGCCTATTCAGATACGATCCAACAACGAACGAAACTACATTGTTGCTCAGCAATCTAACTGAGGCATTTGGGGTAGCAGTTAGCAACGATGGTTCATTTGTCCTTGTTAGCGAGTATAAGGTGAACAGAATCAGGAGATTCTGGTTAACAGGACCTAATGCATACACTTCAGATATATTCTTGCGCCTTCCGGGAAGACCAGATAACATCAGAAGGAACTCAATGAACGAGTTTTGGGTGGCAGTGAATTATCCTTTTGCGTCCTCACCACCACCAGTACCTCCTGTATTGCCTCTAGGACTAAGAGTCAATGCGGAAGGTTTAATTATAGAGTCTGTGCCTCTTGTTGAGGCGTTCAGTACTGAATCGGTCAGTGAAGTTCAAGAATCTGAGGGAAGACTCTATGCTACATCGTTGAGTGATAACTATGCTAGCATTCTCAAGCTCTAG

Protein sequence

>MsG0280009253.01.T01

MMKVSEIRKAQRAEGPATILAIGTANPPNCFEQSTYPDFYFRVTNSEHKIELKEKFQRICDKTMIKRRYMYLTEEILKENPNLCTYMAPSLDTRQDMVVVEAPRLGKEAAVKAIKEWGQPKSKITHLIFCTISGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGSRVLVVCSEVTAITFCGPSDTHLDNLVGQALFGDGAAAVIVGSDPIPEIEKPIFELVWTAQTIAPNSEGAICGQLREFGLSFHLRKDVPDIVSKNIDNALVEAFQPLGISDYNSIFWIAHSGGPAILDKIEKKLALKPEKMSATRKMLSEYGNMSSACVLFILDEMRNKSAQDGLKTTGEGLEWGVLLSFGPGLTIETIVLHKILSRFGDPSASRNNVNASSCCDSEENELLDRLYLPSPLTGPESLAFNSIGEGPYTGVSDGRILKYDEECSCFLEFAHISPDRDNTMCNGISDFSELQETCGRPMGLSFDYNTGELYIADAYYGLVKVPYDGGAATQLVANNLEGTPFGFLAGVDVDPNSGIVYFTEASSRYKIRDLQKLLRRKDHTGSLFRYDPTTNETTLLLSNLTEAFGVAVSNDGSFVLVSEYKVNRIRRFWLTGPNAYTSDIFLRLPGRPDNIRRNSMNEFWVAVNYPFASSPPPVPPVLPLGLRVNAEGLIIESVPLVEAFSTESVSEVQESEGRLYATSLSDNYASILKL*