Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044100.01.T01 | XP_039685449.1 | 98.24 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044100.01.T01 | Q9SLK2 | 75.305 | 328 | 80 | 1 | 15 | 341 | 22 | 349 | 0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044100.01.T01 | A0A396GKC1 | 98.240 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048035.01 | MsG0880044100.01 | 0.804582 | 2.015557e-49 | 1.043096e-46 |
| MsG0080048177.01 | MsG0880044100.01 | 0.832126 | 1.129024e-55 | 1.250277e-52 |
| MsG0080048178.01 | MsG0880044100.01 | 0.830626 | 2.640884e-55 | 2.797683e-52 |
| MsG0180000089.01 | MsG0880044100.01 | 0.841209 | 5.459192e-58 | 7.963635e-55 |
| MsG0180000220.01 | MsG0880044100.01 | 0.809008 | 2.339088e-50 | 1.357628e-47 |
| MsG0180000222.01 | MsG0880044100.01 | 0.861339 | 1.099891e-63 | 3.102162e-60 |
| MsG0180000585.01 | MsG0880044100.01 | 0.805146 | 1.537037e-49 | 8.070974e-47 |
| MsG0180000856.01 | MsG0880044100.01 | 0.827393 | 1.604081e-54 | 1.546755e-51 |
| MsG0180001053.01 | MsG0880044100.01 | 0.805802 | 1.119525e-49 | 5.978717e-47 |
| MsG0180001922.01 | MsG0880044100.01 | 0.833138 | 6.333450e-56 | 7.229187e-53 |
| MsG0880044037.01 | MsG0880044100.01 | 0.809670 | 1.687012e-50 | 9.966641e-48 |
| MsG0880044100.01 | MsG0880044226.01 | 0.802835 | 4.646974e-49 | 2.299567e-46 |
| MsG0880044100.01 | MsG0880044546.01 | 0.841591 | 4.331046e-58 | 6.394592e-55 |
| MsG0880044100.01 | MsG0880045106.01 | 0.803191 | 3.922260e-49 | 1.958571e-46 |
| MsG0880044100.01 | MsG0880045827.01 | 0.809979 | 1.447416e-50 | 8.620865e-48 |
| MsG0880044100.01 | MsG0880046209.01 | 0.801088 | 1.062029e-48 | 5.027539e-46 |
| MsG0880044100.01 | MsG0880046226.01 | 0.918453 | 1.530238e-86 | 4.659998e-82 |
| MsG0880044100.01 | MsG0880046251.01 | -0.808330 | 3.266510e-50 | 1.862508e-47 |
| MsG0880044100.01 | MsG0880046329.01 | 0.820822 | 5.598014e-53 | 4.476959e-50 |
| MsG0880044100.01 | MsG0880046396.01 | 0.827145 | 1.839350e-54 | 1.760500e-51 |
| MsG0880044100.01 | MsG0880046404.01 | 0.814008 | 1.916749e-51 | 1.271213e-48 |
| MsG0880044100.01 | MsG0880046467.01 | 0.823041 | 1.714651e-53 | 1.460040e-50 |
| MsG0880044100.01 | MsG0880046642.01 | 0.837320 | 5.573332e-57 | 7.212825e-54 |
| MsG0880044100.01 | MsG0880046733.01 | 0.818571 | 1.828243e-52 | 1.373505e-49 |
| MsG0880044100.01 | MsG0880047233.01 | 0.850843 | 1.306807e-60 | 2.594112e-57 |
| MsG0880044100.01 | MsG0880047497.01 | 0.853824 | 1.850934e-61 | 4.051268e-58 |
| MsG0180002912.01 | MsG0880044100.01 | 0.817731 | 2.832846e-52 | 2.079712e-49 |
| MsG0180003167.01 | MsG0880044100.01 | 0.828852 | 7.138438e-55 | 7.180619e-52 |
| MsG0180004462.01 | MsG0880044100.01 | 0.839059 | 1.987021e-57 | 2.712240e-54 |
| MsG0180004464.01 | MsG0880044100.01 | 0.853868 | 1.797947e-61 | 3.941054e-58 |
| MsG0180004752.01 | MsG0880044100.01 | 0.829868 | 4.046751e-55 | 4.194512e-52 |
| MsG0180004986.01 | MsG0880044100.01 | 0.836114 | 1.130889e-56 | 1.411400e-53 |
| MsG0180005172.01 | MsG0880044100.01 | 0.855009 | 8.409943e-62 | 1.914064e-58 |
| MsG0180005331.01 | MsG0880044100.01 | 0.863724 | 2.028952e-64 | 6.214015e-61 |
| MsG0180005813.01 | MsG0880044100.01 | 0.809277 | 2.049137e-50 | 1.197963e-47 |
| MsG0180005949.01 | MsG0880044100.01 | 0.819031 | 1.437458e-52 | 1.093852e-49 |
| MsG0180006012.01 | MsG0880044100.01 | 0.813913 | 2.012201e-51 | 1.331031e-48 |
| MsG0180006016.01 | MsG0880044100.01 | 0.812666 | 3.780050e-51 | 2.417856e-48 |
| MsG0180006047.01 | MsG0880044100.01 | 0.838088 | 3.539339e-57 | 4.689865e-54 |
| MsG0280006356.01 | MsG0880044100.01 | 0.810945 | 8.953181e-51 | 5.471024e-48 |
| MsG0280006432.01 | MsG0880044100.01 | 0.821668 | 3.571705e-53 | 2.924660e-50 |
| MsG0780040442.01 | MsG0880044100.01 | 0.811920 | 5.498742e-51 | 3.447327e-48 |
| MsG0780040505.01 | MsG0880044100.01 | 0.802973 | 4.350581e-49 | 2.160254e-46 |
| MsG0780040679.01 | MsG0880044100.01 | 0.844108 | 9.270618e-59 | 1.481379e-55 |
| MsG0780041230.01 | MsG0880044100.01 | 0.821660 | 3.588507e-53 | 2.937647e-50 |
| MsG0780041310.01 | MsG0880044100.01 | 0.818837 | 1.591167e-52 | 1.204305e-49 |
| MsG0780041370.01 | MsG0880044100.01 | 0.833153 | 6.278820e-56 | 7.169804e-53 |
| MsG0780041754.01 | MsG0880044100.01 | 0.809597 | 1.749495e-50 | 1.031561e-47 |
| MsG0880041985.01 | MsG0880044100.01 | 0.833558 | 4.976288e-56 | 5.751602e-53 |
| MsG0880042329.01 | MsG0880044100.01 | 0.819801 | 9.598282e-53 | 7.461702e-50 |
| MsG0880042589.01 | MsG0880044100.01 | 0.872396 | 3.285500e-67 | 1.372792e-63 |
| MsG0880042811.01 | MsG0880044100.01 | 0.830996 | 2.143696e-55 | 2.295977e-52 |
| MsG0880042843.01 | MsG0880044100.01 | 0.848030 | 7.945957e-60 | 1.438932e-56 |
| MsG0880042967.01 | MsG0880044100.01 | 0.804677 | 1.925795e-49 | 9.990874e-47 |
| MsG0880043715.01 | MsG0880044100.01 | 0.818409 | 1.990043e-52 | 1.488556e-49 |
| MsG0880043745.01 | MsG0880044100.01 | 0.805995 | 1.019952e-49 | 5.474000e-47 |
| MsG0880043921.01 | MsG0880044100.01 | 0.800664 | 1.295859e-48 | 6.068674e-46 |
| MsG0280010614.01 | MsG0880044100.01 | 0.813521 | 2.454217e-51 | 1.606361e-48 |
| MsG0280011131.01 | MsG0880044100.01 | 0.809283 | 2.042776e-50 | 1.194451e-47 |
| MsG0280011152.01 | MsG0880044100.01 | 0.825483 | 4.572999e-54 | 4.173429e-51 |
| MsG0380011647.01 | MsG0880044100.01 | 0.803460 | 3.448777e-49 | 1.734083e-46 |
| MsG0380011754.01 | MsG0880044100.01 | 0.800241 | 1.580417e-48 | 7.322046e-46 |
| MsG0380012124.01 | MsG0880044100.01 | 0.818190 | 2.230897e-52 | 1.658504e-49 |
| MsG0380012458.01 | MsG0880044100.01 | 0.812833 | 3.474002e-51 | 2.231764e-48 |
| MsG0380014913.01 | MsG0880044100.01 | 0.827956 | 1.174913e-54 | 1.151546e-51 |
| MsG0680030841.01 | MsG0880044100.01 | 0.816827 | 4.524547e-52 | 3.240254e-49 |
| MsG0680034067.01 | MsG0880044100.01 | 0.813249 | 2.816379e-51 | 1.829648e-48 |
| MsG0680034450.01 | MsG0880044100.01 | 0.816824 | 4.530921e-52 | 3.244610e-49 |
| MsG0480018998.01 | MsG0880044100.01 | 0.843577 | 1.286588e-58 | 2.021882e-55 |
| MsG0480019395.01 | MsG0880044100.01 | 0.812578 | 3.951677e-51 | 2.521814e-48 |
| MsG0480019816.01 | MsG0880044100.01 | 0.807953 | 3.929082e-50 | 2.217988e-47 |
| MsG0480019880.01 | MsG0880044100.01 | 0.859056 | 5.385900e-63 | 1.403668e-59 |
| MsG0480020225.01 | MsG0880044100.01 | 0.801330 | 9.476299e-49 | 4.513215e-46 |
| MsG0480020444.01 | MsG0880044100.01 | 0.861705 | 8.502261e-64 | 2.426766e-60 |
| MsG0480020445.01 | MsG0880044100.01 | 0.830933 | 2.221567e-55 | 2.375046e-52 |
| MsG0480021134.01 | MsG0880044100.01 | 0.883998 | 2.790720e-71 | 1.809726e-67 |
| MsG0480021204.01 | MsG0880044100.01 | 0.814830 | 1.261646e-51 | 8.555422e-49 |
| MsG0480021642.01 | MsG0880044100.01 | 0.835035 | 2.120818e-56 | 2.562099e-53 |
| MsG0480022479.01 | MsG0880044100.01 | 0.848710 | 5.152149e-60 | 9.539532e-57 |
| MsG0480022661.01 | MsG0880044100.01 | 0.801959 | 7.038661e-49 | 3.405968e-46 |
| MsG0480022751.01 | MsG0880044100.01 | 0.817415 | 3.336688e-52 | 2.428531e-49 |
| MsG0480023224.01 | MsG0880044100.01 | 0.806443 | 8.206370e-50 | 4.454762e-47 |
| MsG0480023318.01 | MsG0880044100.01 | 0.812168 | 4.856343e-51 | 3.065329e-48 |
| MsG0480023517.01 | MsG0880044100.01 | 0.807212 | 5.643623e-50 | 3.125023e-47 |
| MsG0480023923.01 | MsG0880044100.01 | 0.805032 | 1.623306e-49 | 8.498883e-47 |
| MsG0580024205.01 | MsG0880044100.01 | 0.845463 | 3.997378e-59 | 6.667094e-56 |
| MsG0580024770.01 | MsG0880044100.01 | 0.816240 | 6.123150e-52 | 4.315404e-49 |
| MsG0580025043.01 | MsG0880044100.01 | 0.857088 | 2.070749e-62 | 5.050975e-59 |
| MsG0580025236.01 | MsG0880044100.01 | 0.830093 | 3.565677e-55 | 3.719173e-52 |
| MsG0580025907.01 | MsG0880044100.01 | 0.821904 | 3.150534e-53 | 2.597140e-50 |
| MsG0380015245.01 | MsG0880044100.01 | 0.825606 | 4.278150e-54 | 3.918135e-51 |
| MsG0380015931.01 | MsG0880044100.01 | 0.865295 | 6.551087e-65 | 2.120362e-61 |
| MsG0380017067.01 | MsG0880044100.01 | 0.811313 | 7.453829e-51 | 4.598476e-48 |
| MsG0380017158.01 | MsG0880044100.01 | 0.849967 | 2.301666e-60 | 4.439597e-57 |
| MsG0380017228.01 | MsG0880044100.01 | 0.819318 | 1.236934e-52 | 9.485859e-50 |
| MsG0480018369.01 | MsG0880044100.01 | 0.812118 | 4.979298e-51 | 3.138631e-48 |
| MsG0580026596.01 | MsG0880044100.01 | 0.830170 | 3.415015e-55 | 3.570307e-52 |
| MsG0580027129.01 | MsG0880044100.01 | 0.849137 | 3.921652e-60 | 7.363937e-57 |
| MsG0580027345.01 | MsG0880044100.01 | 0.800986 | 1.114267e-48 | 5.261331e-46 |
| MsG0580027847.01 | MsG0880044100.01 | 0.800832 | 1.197739e-48 | 5.633077e-46 |
| MsG0580028160.01 | MsG0880044100.01 | 0.811656 | 6.278081e-51 | 3.908286e-48 |
| MsG0580028185.01 | MsG0880044100.01 | 0.815396 | 9.443854e-52 | 6.503541e-49 |
| MsG0580028416.01 | MsG0880044100.01 | 0.814861 | 1.241491e-51 | 8.425683e-49 |
| MsG0580029798.01 | MsG0880044100.01 | 0.830441 | 2.932311e-55 | 3.089562e-52 |
| MsG0580029906.01 | MsG0880044100.01 | 0.868485 | 6.305297e-66 | 2.284606e-62 |
| MsG0580029930.01 | MsG0880044100.01 | 0.803452 | 3.462409e-49 | 1.740578e-46 |
| MsG0280006936.01 | MsG0880044100.01 | 0.800420 | 1.453320e-48 | 6.764257e-46 |
| MsG0280007120.01 | MsG0880044100.01 | 0.842813 | 2.055431e-58 | 3.153061e-55 |
| MsG0280007272.01 | MsG0880044100.01 | 0.862235 | 5.848811e-64 | 1.700815e-60 |
| MsG0280007351.01 | MsG0880044100.01 | 0.816670 | 4.905336e-52 | 3.498021e-49 |
| MsG0280007391.01 | MsG0880044100.01 | 0.849349 | 3.424049e-60 | 6.472966e-57 |
| MsG0280007549.01 | MsG0880044100.01 | 0.822379 | 2.445019e-53 | 2.043176e-50 |
| MsG0280008849.01 | MsG0880044100.01 | 0.805892 | 1.071595e-49 | 5.735910e-47 |
| MsG0280010416.01 | MsG0880044100.01 | 0.840175 | 1.018638e-57 | 1.439289e-54 |
| MsG0280010459.01 | MsG0880044100.01 | 0.830197 | 3.362236e-55 | 3.518028e-52 |
| MsG0680035737.01 | MsG0880044100.01 | 0.855612 | 5.612885e-62 | 1.303328e-58 |
| MsG0680035777.01 | MsG0880044100.01 | 0.803746 | 3.008565e-49 | 1.523893e-46 |
| MsG0780036906.01 | MsG0880044100.01 | 0.819571 | 1.082776e-52 | 8.363716e-50 |
| MsG0780037109.01 | MsG0880044100.01 | 0.812017 | 5.237618e-51 | 3.292402e-48 |
| MsG0780037415.01 | MsG0880044100.01 | 0.822731 | 2.024399e-53 | 1.708701e-50 |
| MsG0780037599.01 | MsG0880044100.01 | 0.880119 | 7.137925e-70 | 3.973696e-66 |
| MsG0780038135.01 | MsG0880044100.01 | 0.813544 | 2.425762e-51 | 1.588754e-48 |
| MsG0780038444.01 | MsG0880044100.01 | 0.852365 | 4.842090e-61 | 1.009428e-57 |
| MsG0780039452.01 | MsG0880044100.01 | 0.802913 | 4.476444e-49 | 2.219532e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280009514.01 | MsG0880044100.01 | PPI |
| MsG0280008763.01 | MsG0880044100.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044100.01.T01 | MTR_2g067760 | 78.979 | 333 | 69 | 1 | 10 | 341 | 16 | 348 | 0.0 | 546 |
| MsG0880044100.01.T01 | MTR_2g101400 | 62.242 | 339 | 125 | 3 | 3 | 338 | 5 | 343 | 6.12e-156 | 441 |
| MsG0880044100.01.T01 | MTR_7g086110 | 62.893 | 318 | 114 | 4 | 24 | 337 | 4 | 321 | 3.09e-147 | 418 |
| MsG0880044100.01.T01 | MTR_2g451450 | 59.077 | 325 | 131 | 2 | 2 | 324 | 7 | 331 | 9.43e-141 | 402 |
| MsG0880044100.01.T01 | MTR_2g451450 | 65.351 | 228 | 79 | 0 | 109 | 336 | 1 | 228 | 8.39e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044100.01.T01 | AT1G54320 | 75.305 | 328 | 80 | 1 | 15 | 341 | 22 | 349 | 0.0 | 520 |
| MsG0880044100.01.T01 | AT3G12740 | 73.780 | 328 | 85 | 1 | 15 | 341 | 23 | 350 | 0.0 | 518 |
| MsG0880044100.01.T01 | AT1G16360 | 65.698 | 344 | 113 | 2 | 2 | 340 | 5 | 348 | 9.86e-173 | 484 |
| MsG0880044100.01.T01 | AT1G79450 | 69.113 | 327 | 100 | 1 | 15 | 340 | 22 | 348 | 9.50e-172 | 481 |
| MsG0880044100.01.T01 | AT1G16360 | 67.925 | 318 | 101 | 1 | 24 | 340 | 17 | 334 | 1.34e-166 | 468 |
| MsG0880044100.01.T01 | AT1G16360 | 66.776 | 304 | 100 | 1 | 24 | 326 | 17 | 320 | 3.62e-155 | 439 |
| MsG0880044100.01.T01 | AT1G79450 | 70.073 | 274 | 81 | 1 | 68 | 340 | 8 | 281 | 2.41e-143 | 407 |
| MsG0880044100.01.T01 | AT5G46150 | 56.839 | 329 | 137 | 3 | 10 | 336 | 13 | 338 | 9.57e-137 | 392 |
| MsG0880044100.01.T01 | AT5G46150 | 56.839 | 329 | 137 | 3 | 10 | 336 | 13 | 338 | 9.57e-137 | 392 |
| MsG0880044100.01.T01 | AT5G46150 | 57.413 | 317 | 133 | 2 | 10 | 324 | 13 | 329 | 8.14e-135 | 387 |
| MsG0880044100.01.T01 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.67e-93 | 278 |
| MsG0880044100.01.T01 | AT1G16360 | 61.836 | 207 | 78 | 1 | 24 | 229 | 17 | 223 | 1.67e-93 | 278 |
| MsG0880044100.01.T01 | AT5G46150 | 55.204 | 221 | 97 | 2 | 10 | 228 | 13 | 233 | 4.59e-90 | 270 |
Find 94 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTACCGTCGGTGATTC+TGG | 0.266413 | 8:-35564984 | None:intergenic |
| AAGGTTAATTCTTTCATTAT+TGG | 0.272200 | 8:+35563318 | MsG0880044100.01.T01:five_prime_UTR |
| AGTGATAGAGATCATAAATT+TGG | 0.272931 | 8:+35565978 | MsG0880044100.01.T01:CDS |
| CCCTCAATTGCTCATCATTT+CGG | 0.279039 | 8:-35565788 | None:intergenic |
| TTCCAGAATGGTAATATTAC+AGG | 0.280420 | 8:+35566023 | MsG0880044100.01.T01:CDS |
| CACCTGTAATATTACCATTC+TGG | 0.312585 | 8:-35566025 | None:intergenic |
| CTTCATATTTGTCATGGAAT+AGG | 0.326806 | 8:+35567462 | MsG0880044100.01.T01:CDS |
| CTAGCTGTGCATGATCTTCC+AGG | 0.349382 | 8:+35567512 | MsG0880044100.01.T01:three_prime_UTR |
| CAGCATGCGTACCGTCAAAT+TGG | 0.350399 | 8:+35564709 | MsG0880044100.01.T01:CDS |
| GGGATGGAGGTTTCGTGTGG+CGG | 0.367668 | 8:-35562778 | None:intergenic |
| CTTTGAATGATGACAGGAAA+TGG | 0.369180 | 8:-35562799 | None:intergenic |
| GGATGGAGGTTTCGTGTGGC+GGG | 0.372167 | 8:-35562777 | None:intergenic |
| CTTTCATCCACCTGCTCAAC+CGG | 0.380967 | 8:+35562828 | MsG0880044100.01.T01:five_prime_UTR |
| ACCATCGTATTCATTCCTAT+TGG | 0.381424 | 8:+35564531 | MsG0880044100.01.T01:CDS |
| GGCATTGCTTATCTCTCTGT+TGG | 0.384623 | 8:+35566617 | MsG0880044100.01.T01:CDS |
| TTGAATTGGTGGTTCTGTTA+TGG | 0.390155 | 8:+35563347 | MsG0880044100.01.T01:exon |
| ATTATTGGATTGGATTGAAT+TGG | 0.392862 | 8:+35563333 | MsG0880044100.01.T01:five_prime_UTR |
| GATGGAGGTTTCGTGTGGCG+GGG | 0.396946 | 8:-35562776 | None:intergenic |
| CCATACAACTTCCTAAAAGT+TGG | 0.399756 | 8:-35566455 | None:intergenic |
| TCTATTAGAAGTAAGATCAT+TGG | 0.400767 | 8:-35563388 | None:intergenic |
| TAATTCTTTCATTATTGGAT+TGG | 0.408761 | 8:+35563323 | MsG0880044100.01.T01:five_prime_UTR |
| TGGAAAGATTGAGGTGGATC+TGG | 0.409137 | 8:+35566475 | MsG0880044100.01.T01:CDS |
| TCAAGAAGCACATCATTGTT+TGG | 0.411534 | 8:+35567751 | MsG0880044100.01.T01:three_prime_UTR |
| ACTTTATCTGTCCAATTTGA+CGG | 0.415199 | 8:-35564720 | None:intergenic |
| GAGAAGAAAGAGAGAGAAAG+AGG | 0.418340 | 8:-35562683 | None:intergenic |
| AGCAGGAGGATCTTATCGTT+TGG | 0.422953 | 8:+35566414 | MsG0880044100.01.T01:CDS |
| AGGCCTCCTGAGGGAAATCC+TGG | 0.424298 | 8:-35567530 | None:intergenic |
| GACCCTGAACGTGATGTAAA+TGG | 0.428391 | 8:+35565843 | MsG0880044100.01.T01:CDS |
| ATGGAGGTTTCGTGTGGCGG+GGG | 0.434992 | 8:-35562775 | None:intergenic |
| TACCTTGTGGTCTTATAGCT+TGG | 0.435333 | 8:+35565877 | MsG0880044100.01.T01:CDS |
| AGGTTGTTGAAATTGTTGAT+AGG | 0.436935 | 8:+35564679 | MsG0880044100.01.T01:intron |
| ATAAGTGAAGCAACTCCAAT+AGG | 0.440672 | 8:-35564546 | None:intergenic |
| AGAAAGAGAGAGAAAGAGGA+AGG | 0.449019 | 8:-35562679 | None:intergenic |
| ACCGCTTGTGGTGTAAGAAT+AGG | 0.455359 | 8:-35564389 | None:intergenic |
| ATTGCTTATCTCTCTGTTGG+AGG | 0.456603 | 8:+35566620 | MsG0880044100.01.T01:CDS |
| ACACCATTTACATCACGTTC+AGG | 0.458429 | 8:-35565846 | None:intergenic |
| TCTCTTTGTTATAGGCAACT+TGG | 0.460443 | 8:+35567434 | MsG0880044100.01.T01:intron |
| GCCGAAATGATGAGCAATTG+AGG | 0.464516 | 8:+35565787 | MsG0880044100.01.T01:CDS |
| GAGATCCTTCATATTTGTCA+TGG | 0.476748 | 8:+35567456 | MsG0880044100.01.T01:CDS |
| TCATGGAATAGGAACCCATC+AGG | 0.477360 | 8:+35567473 | MsG0880044100.01.T01:CDS |
| TTGTATTGTCAACTACTAGT+TGG | 0.492500 | 8:+35566570 | MsG0880044100.01.T01:CDS |
| ATTGAGGTGGATCTGGAGAA+AGG | 0.496339 | 8:+35566482 | MsG0880044100.01.T01:CDS |
| TCTTTCAAGCTCTTTGCAAA+AGG | 0.501248 | 8:+35563299 | MsG0880044100.01.T01:intron |
| AGAAGGGTTACCGGTTGAGC+AGG | 0.505318 | 8:-35562838 | None:intergenic |
| ATTGGATTGGATTGAATTGG+TGG | 0.507211 | 8:+35563336 | MsG0880044100.01.T01:five_prime_UTR |
| GAAAGAGAGAGAAAGAGGAA+GGG | 0.507289 | 8:-35562678 | None:intergenic |
| GATGAGCAATTGAGGGATGC+TGG | 0.508544 | 8:+35565795 | MsG0880044100.01.T01:CDS |
| AGCTGATAGTAAACATAGAT+AGG | 0.508601 | 8:-35564949 | None:intergenic |
| TGAACAAGAAAGAAATCTCA+TGG | 0.508781 | 8:+35565952 | MsG0880044100.01.T01:CDS |
| GGTGGAAAGAATGACTTCCT+TGG | 0.509883 | 8:+35566596 | MsG0880044100.01.T01:CDS |
| TTTCAGCTCAGTGCCCTGAT+GGG | 0.513086 | 8:-35567487 | None:intergenic |
| CCGAAATGATGAGCAATTGA+GGG | 0.522900 | 8:+35565788 | MsG0880044100.01.T01:CDS |
| ACAAACATATTTACCGCTTG+TGG | 0.523482 | 8:-35564401 | None:intergenic |
| TCAACTACTAGTTGGCTTGG+TGG | 0.523709 | 8:+35566578 | MsG0880044100.01.T01:CDS |
| TATGAAACAGTTGAGTGAGC+AGG | 0.525938 | 8:+35566397 | MsG0880044100.01.T01:intron |
| AATTGACTTTGAATGATGAC+AGG | 0.528004 | 8:-35562805 | None:intergenic |
| CTATTCCATGACAAATATGA+AGG | 0.529494 | 8:-35567461 | None:intergenic |
| TGAAATTGTTGATAGGTATG+AGG | 0.531187 | 8:+35564686 | MsG0880044100.01.T01:CDS |
| GAAGTTGTATGGAAAGATTG+AGG | 0.531483 | 8:+35566466 | MsG0880044100.01.T01:CDS |
| GTTATGGCAACAACTAGCGT+TGG | 0.539891 | 8:+35563363 | MsG0880044100.01.T01:exon |
| TTTGAATGATGACAGGAAAT+GGG | 0.541915 | 8:-35562798 | None:intergenic |
| TTGTCAACTACTAGTTGGCT+TGG | 0.552516 | 8:+35566575 | MsG0880044100.01.T01:CDS |
| GATCTTCCAGGATTTCCCTC+AGG | 0.555644 | 8:+35567524 | MsG0880044100.01.T01:three_prime_UTR |
| CACCATTTACATCACGTTCA+GGG | 0.557158 | 8:-35565845 | None:intergenic |
| GAAAGGTGATGAGATAAAAG+TGG | 0.561470 | 8:+35566499 | MsG0880044100.01.T01:CDS |
| CTTCCAGGATTTCCCTCAGG+AGG | 0.564217 | 8:+35567527 | MsG0880044100.01.T01:three_prime_UTR |
| AGAGAGGAGAGAGAAAGAAA+CGG | 0.564286 | 8:+35562742 | MsG0880044100.01.T01:five_prime_UTR |
| AGAGAGAAAGAAACGGTCAC+CGG | 0.572120 | 8:+35562749 | MsG0880044100.01.T01:five_prime_UTR |
| GCCTATTCTTACACCACAAG+CGG | 0.573542 | 8:+35564388 | MsG0880044100.01.T01:CDS |
| AGGGTTACCGGTTGAGCAGG+TGG | 0.576409 | 8:-35562835 | None:intergenic |
| GATGACAGGAAATGGGATGG+AGG | 0.579531 | 8:-35562791 | None:intergenic |
| ATAAGACCACAAGGTACGAT+TGG | 0.580186 | 8:-35565870 | None:intergenic |
| TATCGTTTGGATGCGGACTG+CGG | 0.588232 | 8:+35566427 | MsG0880044100.01.T01:CDS |
| TCTTCAGACTTAAACAGTAG+CGG | 0.591471 | 8:+35567566 | MsG0880044100.01.T01:three_prime_UTR |
| AGGATCTTATCGTTTGGATG+CGG | 0.592427 | 8:+35566420 | MsG0880044100.01.T01:CDS |
| TCATCTCAACGAGAGTATAC+CGG | 0.595675 | 8:+35566052 | MsG0880044100.01.T01:CDS |
| CAGAATGGTAATATTACAGG+TGG | 0.609886 | 8:+35566026 | MsG0880044100.01.T01:CDS |
| CAGAGAGATAAGCAATGCCA+AGG | 0.610437 | 8:-35566613 | None:intergenic |
| AATGATGACAGGAAATGGGA+TGG | 0.614202 | 8:-35562794 | None:intergenic |
| CTCCAAGCTATAAGACCACA+AGG | 0.620489 | 8:-35565879 | None:intergenic |
| CTGAAGAATAATATTACACA+AGG | 0.620911 | 8:-35567550 | None:intergenic |
| GTTGTATGGAAAGATTGAGG+TGG | 0.624167 | 8:+35566469 | MsG0880044100.01.T01:CDS |
| CATGGAATAGGAACCCATCA+GGG | 0.630665 | 8:+35567474 | MsG0880044100.01.T01:CDS |
| ATATACAATAGTAAAAGCCA+TGG | 0.632004 | 8:-35566660 | None:intergenic |
| GAAACAGTTGAGTGAGCAGG+AGG | 0.635104 | 8:+35566400 | MsG0880044100.01.T01:intron |
| ATATTACACAAGGCCTCCTG+AGG | 0.637549 | 8:-35567540 | None:intergenic |
| AATGGGATGGAGGTTTCGTG+TGG | 0.653603 | 8:-35562781 | None:intergenic |
| GGAAAAGCAAACTCAACAAG+TGG | 0.654434 | 8:+35565816 | MsG0880044100.01.T01:CDS |
| GTAAGAATAGGCTTGCATGC+TGG | 0.654457 | 8:-35564377 | None:intergenic |
| TATTACACAAGGCCTCCTGA+GGG | 0.665038 | 8:-35567539 | None:intergenic |
| CTGCCGATAAAACTTGCACA+AGG | 0.669954 | 8:+35564760 | MsG0880044100.01.T01:CDS |
| TCCAATAGGAATGAATACGA+TGG | 0.696774 | 8:-35564532 | None:intergenic |
| ATTTCTACCAGAATCACCGA+CGG | 0.732060 | 8:+35564977 | MsG0880044100.01.T01:CDS |
| GGTGTGCCAATCGTACCTTG+TGG | 0.829864 | 8:+35565864 | MsG0880044100.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTTAAAAAA+AGG | + | Chr8:35565754-35565773 | MsG0880044100.01.T01:intron | 0.0% |
| !! | AAAGATAAAATAAAGTTAAA+TGG | + | Chr8:35563930-35563949 | MsG0880044100.01.T01:intron | 10.0% |
| !! | AAAGTATATATTATAATTAC+AGG | - | Chr8:35567299-35567318 | None:intergenic | 10.0% |
| !! | AAGTATATATTATAATTACA+GGG | - | Chr8:35567298-35567317 | None:intergenic | 10.0% |
| !! | TATTTGTATTTATATTCAAA+AGG | - | Chr8:35565598-35565617 | None:intergenic | 10.0% |
| !!! | AAGTTCAATTTTTTTTTTTT+TGG | + | Chr8:35563777-35563796 | MsG0880044100.01.T01:intron | 10.0% |
| !!! | ATTTTTATGTTCATTTTTTA+AGG | + | Chr8:35563548-35563567 | MsG0880044100.01.T01:intron | 10.0% |
| !!! | ATTTTTATGTTCATTTTTTT+AGG | + | Chr8:35563218-35563237 | MsG0880044100.01.T01:intron | 10.0% |
| !!! | TTTCTATTAATTCTTTTTTA+GGG | + | Chr8:35563123-35563142 | MsG0880044100.01.T01:intron | 10.0% |
| !!! | TTTTCTATTAATTCTTTTTT+AGG | + | Chr8:35563122-35563141 | MsG0880044100.01.T01:intron | 10.0% |
| !!! | TTTTTATGTTCATTTTTTAA+GGG | + | Chr8:35563549-35563568 | MsG0880044100.01.T01:intron | 10.0% |
| !!! | TTTTTATGTTCATTTTTTTA+GGG | + | Chr8:35563219-35563238 | MsG0880044100.01.T01:intron | 10.0% |
| !! | AAATTAGAAAAAACAAAACA+TGG | - | Chr8:35563172-35563191 | None:intergenic | 15.0% |
| !! | AATTAGAAAAAACAAAACAT+GGG | - | Chr8:35563171-35563190 | None:intergenic | 15.0% |
| !! | ATGTAAGAAGAAAAAAAAAA+AGG | + | Chr8:35567020-35567039 | MsG0880044100.01.T01:intron | 15.0% |
| !! | GAAAATAATTGTATGTATTT+GGG | + | Chr8:35564261-35564280 | MsG0880044100.01.T01:intron | 15.0% |
| !! | GTAAACTTAAAAAAGTTAAA+TGG | + | Chr8:35563952-35563971 | MsG0880044100.01.T01:intron | 15.0% |
| !! | TGAAAATAATTGTATGTATT+TGG | + | Chr8:35564260-35564279 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | AAGATAAAAAGAATTCTTTT+TGG | - | Chr8:35567672-35567691 | None:intergenic | 15.0% |
| !!! | ATAATTTGTATTTTATTGAC+TGG | + | Chr8:35562640-35562659 | MsG0880044100.01.T01:five_prime_UTR | 15.0% |
| !!! | ATGTTTTGTTTTTTCTAATT+TGG | + | Chr8:35563171-35563190 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTATGATTACTTCTTTTTTA+GGG | + | Chr8:35563453-35563472 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTATTGTTACTTGTTTTTTA+GGG | + | Chr8:35563650-35563669 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTTATATTCAAATTGACTTA+AGG | - | Chr8:35566895-35566914 | None:intergenic | 15.0% |
| !!! | TTTATTGTTACTTGTTTTTT+AGG | + | Chr8:35563649-35563668 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTTTATGTTCATTTTTTAAG+GGG | + | Chr8:35563550-35563569 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTTTATGTTCATTTTTTTAG+GGG | + | Chr8:35563220-35563239 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTTTATGTTTTTTTGTGTTA+AGG | - | Chr8:35562723-35562742 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTTAATTTTTGAA+GGG | + | Chr8:35563792-35563811 | MsG0880044100.01.T01:intron | 15.0% |
| !!! | TTTTTTTGGTTAATTTTTGA+AGG | + | Chr8:35563791-35563810 | MsG0880044100.01.T01:intron | 15.0% |
| !! | AAATCAGAAAAAACAAAACA+TGG | - | Chr8:35563502-35563521 | None:intergenic | 20.0% |
| !! | AAATTAAGTTTCAAAAACCA+TGG | - | Chr8:35564153-35564172 | None:intergenic | 20.0% |
| !! | AACAAACAACATTTATTCAT+AGG | - | Chr8:35565210-35565229 | None:intergenic | 20.0% |
| !! | AACAAATGATCATCAAAATT+TGG | - | Chr8:35564885-35564904 | None:intergenic | 20.0% |
| !! | AAGGTTAATTCTTTCATTAT+TGG | + | Chr8:35562999-35563018 | MsG0880044100.01.T01:intron | 20.0% |
| !! | AATCAGAAAAAACAAAACAT+GGG | - | Chr8:35563501-35563520 | None:intergenic | 20.0% |
| !! | ATGTGAAAAAAAGGATTATT+TGG | + | Chr8:35565278-35565297 | MsG0880044100.01.T01:intron | 20.0% |
| !! | CTAAATTTCTTATAAGCTTA+TGG | + | Chr8:35566093-35566112 | MsG0880044100.01.T01:intron | 20.0% |
| !! | TAAAAACTACTCTTATGAAT+AGG | + | Chr8:35564906-35564925 | MsG0880044100.01.T01:intron | 20.0% |
| !! | TAATTCTTTCATTATTGGAT+TGG | + | Chr8:35563004-35563023 | MsG0880044100.01.T01:intron | 20.0% |
| !! | TGAGCTAATAAAAATTATGT+TGG | - | Chr8:35566871-35566890 | None:intergenic | 20.0% |
| !! | TGATTGATCTATTTAAAGAT+TGG | - | Chr8:35566237-35566256 | None:intergenic | 20.0% |
| !!! | AATTTCAACTGATTCATATA+AGG | - | Chr8:35567328-35567347 | None:intergenic | 20.0% |
| !!! | AGCAATAATTTTCATACATT+AGG | + | Chr8:35567629-35567648 | MsG0880044100.01.T01:three_prime_UTR | 20.0% |
| !!! | ATAAAAAGAATTCTTTTTGG+AGG | - | Chr8:35567669-35567688 | None:intergenic | 20.0% |
| !!! | ATGTTTTGTTTTTTCTGATT+TGG | + | Chr8:35563501-35563520 | MsG0880044100.01.T01:intron | 20.0% |
| !!! | ATTTCAACTGATTCATATAA+GGG | - | Chr8:35567327-35567346 | None:intergenic | 20.0% |
| !!! | GTTATGATTACTTCTTTTTT+AGG | + | Chr8:35563452-35563471 | MsG0880044100.01.T01:intron | 20.0% |
| !!! | TATTGTTACTTGTTTTTTAG+GGG | + | Chr8:35563651-35563670 | MsG0880044100.01.T01:intron | 20.0% |
| !!! | TTTAGAATTCACTATTTACA+TGG | + | Chr8:35564465-35564484 | MsG0880044100.01.T01:intron | 20.0% |
| ! | AAAAATGTGTATGTCACATT+TGG | - | Chr8:35566269-35566288 | None:intergenic | 25.0% |
| ! | AAAACAAAAAATCTCACACT+TGG | - | Chr8:35563430-35563449 | None:intergenic | 25.0% |
| ! | AAACAAAAAATCTCACACTT+GGG | - | Chr8:35563429-35563448 | None:intergenic | 25.0% |
| ! | AAGAAAAAGAAGAAGAAGAA+GGG | - | Chr8:35562857-35562876 | None:intergenic | 25.0% |
| ! | AATAGAAAAAAGCTTACACT+TGG | - | Chr8:35563111-35563130 | None:intergenic | 25.0% |
| ! | AGTGAATTCTAAATGCATAT+AGG | - | Chr8:35564458-35564477 | None:intergenic | 25.0% |
| ! | AGTGATAGAGATCATAAATT+TGG | + | Chr8:35565978-35565997 | MsG0880044100.01.T01:CDS | 25.0% |
| ! | AGTTAATGCAGAAATAACAT+AGG | - | Chr8:35564833-35564852 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTACCTAAACA+AGG | - | Chr8:35563847-35563866 | None:intergenic | 25.0% |
| ! | ATAGAAAAAAGCTTACACTT+GGG | - | Chr8:35563110-35563129 | None:intergenic | 25.0% |
| ! | ATATACAATAGTAAAAGCCA+TGG | - | Chr8:35566663-35566682 | None:intergenic | 25.0% |
| ! | ATGAGGTTATGAATGATTTA+TGG | + | Chr8:35564215-35564234 | MsG0880044100.01.T01:intron | 25.0% |
| ! | ATTAAGCAAATATTACCTCA+TGG | + | Chr8:35563604-35563623 | MsG0880044100.01.T01:intron | 25.0% |
| ! | ATTTGACATGTTGAGTATTA+TGG | + | Chr8:35564169-35564188 | MsG0880044100.01.T01:intron | 25.0% |
| ! | CACAAAAAAACATAAAAGAG+AGG | + | Chr8:35562726-35562745 | MsG0880044100.01.T01:five_prime_UTR | 25.0% |
| ! | CTGAAGAATAATATTACACA+AGG | - | Chr8:35567553-35567572 | None:intergenic | 25.0% |
| ! | GAGTAAGTGAAAAAATTTAC+CGG | - | Chr8:35566074-35566093 | None:intergenic | 25.0% |
| ! | TATAATTTCCACTCATTGAT+TGG | + | Chr8:35565665-35565684 | MsG0880044100.01.T01:intron | 25.0% |
| ! | TCACATTAGAAAACCATAAT+GGG | - | Chr8:35565264-35565283 | None:intergenic | 25.0% |
| ! | TCTATTAGAAGTAAGATCAT+TGG | - | Chr8:35563391-35563410 | None:intergenic | 25.0% |
| ! | TCTATTTGTAGTAAGATCAT+TGG | - | Chr8:35563072-35563091 | None:intergenic | 25.0% |
| ! | TTATAACTGATCTTTGTATC+AGG | + | Chr8:35564659-35564678 | MsG0880044100.01.T01:intron | 25.0% |
| ! | TTCACATTAGAAAACCATAA+TGG | - | Chr8:35565265-35565284 | None:intergenic | 25.0% |
| ! | TTTAAGCAAATATTACTCCA+TGG | + | Chr8:35564133-35564152 | MsG0880044100.01.T01:intron | 25.0% |
| !! | AACATTTCGTGCATTTTAAA+TGG | - | Chr8:35565405-35565424 | None:intergenic | 25.0% |
| !! | ATTATTGGATTGGATTGAAT+TGG | + | Chr8:35563014-35563033 | MsG0880044100.01.T01:intron | 25.0% |
| !! | GGTTTTCTAATGTGAAAAAA+AGG | + | Chr8:35565269-35565288 | MsG0880044100.01.T01:intron | 25.0% |
| !! | TGGTATATTACTTTCTTTTC+AGG | + | Chr8:35564485-35564504 | MsG0880044100.01.T01:intron | 25.0% |
| !! | TTTGGTATCATTTAAGTTTG+AGG | + | Chr8:35565296-35565315 | MsG0880044100.01.T01:intron | 25.0% |
| !!! | TACAACACATATAGTTTTAG+TGG | + | Chr8:35566536-35566555 | MsG0880044100.01.T01:CDS | 25.0% |
| !!! | TACCATTCTGGAAATTTTTA+GGG | - | Chr8:35566016-35566035 | None:intergenic | 25.0% |
| !!! | TTACCATTCTGGAAATTTTT+AGG | - | Chr8:35566017-35566036 | None:intergenic | 25.0% |
| !!! | TTTTGAATGATGATGTTCAT+TGG | + | Chr8:35566736-35566755 | MsG0880044100.01.T01:intron | 25.0% |
| AAACTACTCTTATGAATAGG+TGG | + | Chr8:35564909-35564928 | MsG0880044100.01.T01:intron | 30.0% | |
| AAAGACATCCAAACAATTGA+GGG | - | Chr8:35565130-35565149 | None:intergenic | 30.0% | |
| AACAAAAGCCACAATTAGAT+TGG | - | Chr8:35564115-35564134 | None:intergenic | 30.0% | |
| AACTTTCCTTACTTCATACA+TGG | + | Chr8:35566782-35566801 | MsG0880044100.01.T01:intron | 30.0% | |
| AATAAAAAGCAATGTACCGT+CGG | - | Chr8:35564996-35565015 | None:intergenic | 30.0% | |
| AATTACACCGATGTAATACT+TGG | + | Chr8:35567084-35567103 | MsG0880044100.01.T01:intron | 30.0% | |
| ACACTGGAAATCATAAAATC+AGG | - | Chr8:35566295-35566314 | None:intergenic | 30.0% | |
| ACTGTCTTCATAAGTTATCT+TGG | + | Chr8:35563978-35563997 | MsG0880044100.01.T01:intron | 30.0% | |
| ACTTTATCTGTCCAATTTGA+CGG | - | Chr8:35564723-35564742 | None:intergenic | 30.0% | |
| ACTTTCCTTACTTCATACAT+GGG | + | Chr8:35566783-35566802 | MsG0880044100.01.T01:intron | 30.0% | |
| AGATTGAAAGAGAAAAAGAG+AGG | - | Chr8:35562905-35562924 | None:intergenic | 30.0% | |
| AGCTGATAGTAAACATAGAT+AGG | - | Chr8:35564952-35564971 | None:intergenic | 30.0% | |
| AGGTTGTTGAAATTGTTGAT+AGG | + | Chr8:35564679-35564698 | MsG0880044100.01.T01:intron | 30.0% | |
| ATACTACCCAAGTATTACAT+CGG | - | Chr8:35567094-35567113 | None:intergenic | 30.0% | |
| ATGGAGTTAGACAATATGTT+TGG | + | Chr8:35564234-35564253 | MsG0880044100.01.T01:intron | 30.0% | |
| ATTACACCGATGTAATACTT+GGG | + | Chr8:35567085-35567104 | MsG0880044100.01.T01:intron | 30.0% | |
| CTAAAAAACCAATCAATGAG+TGG | - | Chr8:35565676-35565695 | None:intergenic | 30.0% | |
| CTATTCCATGACAAATATGA+AGG | - | Chr8:35567464-35567483 | None:intergenic | 30.0% | |
| CTTCATATTTGTCATGGAAT+AGG | + | Chr8:35567462-35567481 | MsG0880044100.01.T01:CDS | 30.0% | |
| GAACAAGTACAAAGAGAAAA+TGG | - | Chr8:35564811-35564830 | None:intergenic | 30.0% | |
| GAACATGTAAGATGTTAATC+TGG | - | Chr8:35567249-35567268 | None:intergenic | 30.0% | |
| GAAGAAAAAGAAGAAGAAGA+AGG | - | Chr8:35562858-35562877 | None:intergenic | 30.0% | |
| GTTGAAATTGTGATGTTTAG+TGG | + | Chr8:35567339-35567358 | MsG0880044100.01.T01:intron | 30.0% | |
| TAATGGGAACACATGAAAAT+GGG | - | Chr8:35565248-35565267 | None:intergenic | 30.0% | |
| TACAATCACAAGATGAACAA+TGG | - | Chr8:35566321-35566340 | None:intergenic | 30.0% | |
| TGAACAAGAAAGAAATCTCA+TGG | + | Chr8:35565952-35565971 | MsG0880044100.01.T01:CDS | 30.0% | |
| TTCCAGAATGGTAATATTAC+AGG | + | Chr8:35566023-35566042 | MsG0880044100.01.T01:CDS | 30.0% | |
| TTCCCTAAAAATTTCCAGAA+TGG | + | Chr8:35566011-35566030 | MsG0880044100.01.T01:CDS | 30.0% | |
| TTGTATTGTCAACTACTAGT+TGG | + | Chr8:35566570-35566589 | MsG0880044100.01.T01:CDS | 30.0% | |
| TTTGAATGATGACAGGAAAT+GGG | - | Chr8:35562801-35562820 | None:intergenic | 30.0% | |
| TTTGATCTCTGTCATATAGA+AGG | + | Chr8:35567056-35567075 | MsG0880044100.01.T01:intron | 30.0% | |
| ! | AATTGACTTTGAATGATGAC+AGG | - | Chr8:35562808-35562827 | None:intergenic | 30.0% |
| ! | ATAATGGGAACACATGAAAA+TGG | - | Chr8:35565249-35565268 | None:intergenic | 30.0% |
| ! | ATTTTCATGTGTTCCCATTA+TGG | + | Chr8:35565248-35565267 | MsG0880044100.01.T01:intron | 30.0% |
| ! | CAAATATTACCTCATGGTTT+TGG | + | Chr8:35563610-35563629 | MsG0880044100.01.T01:intron | 30.0% |
| ! | TCTGTATGTCTCTTTGTTAT+AGG | + | Chr8:35567426-35567445 | MsG0880044100.01.T01:intron | 30.0% |
| ! | TGAAATTGTTGATAGGTATG+AGG | + | Chr8:35564686-35564705 | MsG0880044100.01.T01:CDS | 30.0% |
| ! | TTGTATATTTTGTCAAGCCA+AGG | + | Chr8:35566675-35566694 | MsG0880044100.01.T01:CDS | 30.0% |
| !! | ATAAGACTTTAGCCTTGTTT+AGG | + | Chr8:35563832-35563851 | MsG0880044100.01.T01:intron | 30.0% |
| !!! | CTCATTGATTGGTTTTTTAG+TGG | + | Chr8:35565676-35565695 | MsG0880044100.01.T01:intron | 30.0% |
| AACAAGTTTCCAAAACCATG+AGG | - | Chr8:35563622-35563641 | None:intergenic | 35.0% | |
| AAGCAAACAATCAAAGACAG+TGG | - | Chr8:35565640-35565659 | None:intergenic | 35.0% | |
| AATGGGAACACATGAAAATG+GGG | - | Chr8:35565247-35565266 | None:intergenic | 35.0% | |
| ACAAACATATTTACCGCTTG+TGG | - | Chr8:35564404-35564423 | None:intergenic | 35.0% | |
| ACCATCGTATTCATTCCTAT+TGG | + | Chr8:35564531-35564550 | MsG0880044100.01.T01:CDS | 35.0% | |
| AGATGAACAATGGAATACAC+TGG | - | Chr8:35566311-35566330 | None:intergenic | 35.0% | |
| ATAAGTGAAGCAACTCCAAT+AGG | - | Chr8:35564549-35564568 | None:intergenic | 35.0% | |
| ATTCACTCTTTGCACACAAT+AGG | + | Chr8:35566826-35566845 | MsG0880044100.01.T01:intron | 35.0% | |
| CAAAGACATCCAAACAATTG+AGG | - | Chr8:35565131-35565150 | None:intergenic | 35.0% | |
| CACCTGTAATATTACCATTC+TGG | - | Chr8:35566028-35566047 | None:intergenic | 35.0% | |
| CAGAATGGTAATATTACAGG+TGG | + | Chr8:35566026-35566045 | MsG0880044100.01.T01:CDS | 35.0% | |
| CCATACAACTTCCTAAAAGT+TGG | - | Chr8:35566458-35566477 | None:intergenic | 35.0% | |
| CTTTGAATGATGACAGGAAA+TGG | - | Chr8:35562802-35562821 | None:intergenic | 35.0% | |
| GAAAACCCATGTATGAAGTA+AGG | - | Chr8:35566791-35566810 | None:intergenic | 35.0% | |
| GAAAGGTGATGAGATAAAAG+TGG | + | Chr8:35566499-35566518 | MsG0880044100.01.T01:CDS | 35.0% | |
| GAAGTTGTATGGAAAGATTG+AGG | + | Chr8:35566466-35566485 | MsG0880044100.01.T01:CDS | 35.0% | |
| GAGATCCTTCATATTTGTCA+TGG | + | Chr8:35567456-35567475 | MsG0880044100.01.T01:CDS | 35.0% | |
| TAGCTTACGAACAATGTCAT+AGG | + | Chr8:35564024-35564043 | MsG0880044100.01.T01:intron | 35.0% | |
| TAGTTGAAGAATGTGCTATG+AGG | + | Chr8:35564198-35564217 | MsG0880044100.01.T01:intron | 35.0% | |
| TCCAATAGGAATGAATACGA+TGG | - | Chr8:35564535-35564554 | None:intergenic | 35.0% | |
| TCTTCAGACTTAAACAGTAG+CGG | + | Chr8:35567566-35567585 | MsG0880044100.01.T01:three_prime_UTR | 35.0% | |
| TCTTTCAAGCTCTTTGCAAA+AGG | + | Chr8:35563299-35563318 | MsG0880044100.01.T01:intron | 35.0% | |
| TGAAGTAAGGAAAGTTATCG+AGG | - | Chr8:35566778-35566797 | None:intergenic | 35.0% | |
| TTAGGGGTTTCAGCTTAATT+TGG | + | Chr8:35563667-35563686 | MsG0880044100.01.T01:intron | 35.0% | |
| ! | AGTAAGCGATTTTCTTACCT+TGG | - | Chr8:35566695-35566714 | None:intergenic | 35.0% |
| ! | ATTGGATTGGATTGAATTGG+TGG | + | Chr8:35563017-35563036 | MsG0880044100.01.T01:intron | 35.0% |
| ! | TCAAGAAGCACATCATTGTT+TGG | + | Chr8:35567751-35567770 | MsG0880044100.01.T01:three_prime_UTR | 35.0% |
| ! | TCTCTTTGTTATAGGCAACT+TGG | + | Chr8:35567434-35567453 | MsG0880044100.01.T01:intron | 35.0% |
| ! | TTGAATTGGTGGTTCTGTTA+TGG | + | Chr8:35563028-35563047 | MsG0880044100.01.T01:intron | 35.0% |
| !! | CCAACTTTTAGGAAGTTGTA+TGG | + | Chr8:35566455-35566474 | MsG0880044100.01.T01:CDS | 35.0% |
| !! | GAAATTGGTTTGAAGCAACA+AGG | + | Chr8:35565072-35565091 | MsG0880044100.01.T01:intron | 35.0% |
| !! | GTTGTCGATCTAGCTATTTT+TGG | - | Chr8:35565357-35565376 | None:intergenic | 35.0% |
| !! | TCTTTGAAGCTCTTTGCAAA+AGG | + | Chr8:35562980-35562999 | MsG0880044100.01.T01:intron | 35.0% |
| !! | TGTCCTTGTGCAAGTTTTAT+CGG | - | Chr8:35564766-35564785 | None:intergenic | 35.0% |
| AATGATGACAGGAAATGGGA+TGG | - | Chr8:35562797-35562816 | None:intergenic | 40.0% | |
| ACACCATTTACATCACGTTC+AGG | - | Chr8:35565849-35565868 | None:intergenic | 40.0% | |
| AGAAAGAGAGAGAAAGAGGA+AGG | - | Chr8:35562682-35562701 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGGGTTAC+CGG | - | Chr8:35562850-35562869 | None:intergenic | 40.0% | |
| AGAGAGGAGAGAGAAAGAAA+CGG | + | Chr8:35562742-35562761 | MsG0880044100.01.T01:five_prime_UTR | 40.0% | |
| AGGATCTTATCGTTTGGATG+CGG | + | Chr8:35566420-35566439 | MsG0880044100.01.T01:CDS | 40.0% | |
| ATAAGACCACAAGGTACGAT+TGG | - | Chr8:35565873-35565892 | None:intergenic | 40.0% | |
| ATTTCTACCAGAATCACCGA+CGG | + | Chr8:35564977-35564996 | MsG0880044100.01.T01:CDS | 40.0% | |
| CAAACGAGCCAATCTAATTG+TGG | + | Chr8:35564104-35564123 | MsG0880044100.01.T01:intron | 40.0% | |
| CACCATTTACATCACGTTCA+GGG | - | Chr8:35565848-35565867 | None:intergenic | 40.0% | |
| CCCTCAATTGCTCATCATTT+CGG | - | Chr8:35565791-35565810 | None:intergenic | 40.0% | |
| CCGAAATGATGAGCAATTGA+GGG | + | Chr8:35565788-35565807 | MsG0880044100.01.T01:CDS | 40.0% | |
| GAAAGAGAGAGAAAGAGGAA+GGG | - | Chr8:35562681-35562700 | None:intergenic | 40.0% | |
| GAAGCACATCATTGTTTGGT+TGG | + | Chr8:35567755-35567774 | MsG0880044100.01.T01:three_prime_UTR | 40.0% | |
| GAGAAGAAAGAGAGAGAAAG+AGG | - | Chr8:35562686-35562705 | None:intergenic | 40.0% | |
| GGAAAAGCAAACTCAACAAG+TGG | + | Chr8:35565816-35565835 | MsG0880044100.01.T01:CDS | 40.0% | |
| GTTGTATGGAAAGATTGAGG+TGG | + | Chr8:35566469-35566488 | MsG0880044100.01.T01:CDS | 40.0% | |
| TATGAAACAGTTGAGTGAGC+AGG | + | Chr8:35566397-35566416 | MsG0880044100.01.T01:intron | 40.0% | |
| TTCACATTTGCAATGCACAG+AGG | + | Chr8:35565050-35565069 | MsG0880044100.01.T01:intron | 40.0% | |
| TTGCAATGCACAGAGGAAAT+TGG | + | Chr8:35565057-35565076 | MsG0880044100.01.T01:intron | 40.0% | |
| TTGTCAACTACTAGTTGGCT+TGG | + | Chr8:35566575-35566594 | MsG0880044100.01.T01:CDS | 40.0% | |
| ! | TCATCTCAACGAGAGTATAC+CGG | + | Chr8:35566052-35566071 | MsG0880044100.01.T01:CDS | 40.0% |
| ! | TGGAGGATTGAGCTTCTTTT+TGG | + | Chr8:35566637-35566656 | MsG0880044100.01.T01:CDS | 40.0% |
| !! | ATTGAGCTTCTTTTTGGCCA+TGG | + | Chr8:35566643-35566662 | MsG0880044100.01.T01:CDS | 40.0% |
| !! | TACCTTGTGGTCTTATAGCT+TGG | + | Chr8:35565877-35565896 | MsG0880044100.01.T01:CDS | 40.0% |
| AAGATCATTGGATCCAACGC+TGG | - | Chr8:35563060-35563079 | None:intergenic | 45.0% | |
| ACCGCTTGTGGTGTAAGAAT+AGG | - | Chr8:35564392-35564411 | None:intergenic | 45.0% | |
| AGAGAGAAAGAAACGGTCAC+CGG | + | Chr8:35562749-35562768 | MsG0880044100.01.T01:five_prime_UTR | 45.0% | |
| AGCAGGAGGATCTTATCGTT+TGG | + | Chr8:35566414-35566433 | MsG0880044100.01.T01:CDS | 45.0% | |
| ATATTACACAAGGCCTCCTG+AGG | - | Chr8:35567543-35567562 | None:intergenic | 45.0% | |
| ATTGAGGTGGATCTGGAGAA+AGG | + | Chr8:35566482-35566501 | MsG0880044100.01.T01:CDS | 45.0% | |
| CACTCTGCTCGATAACTTAC+TGG | + | Chr8:35567114-35567133 | MsG0880044100.01.T01:intron | 45.0% | |
| CAGAGAGATAAGCAATGCCA+AGG | - | Chr8:35566616-35566635 | None:intergenic | 45.0% | |
| CATGGAATAGGAACCCATCA+GGG | + | Chr8:35567474-35567493 | MsG0880044100.01.T01:CDS | 45.0% | |
| CTCCAAGCTATAAGACCACA+AGG | - | Chr8:35565882-35565901 | None:intergenic | 45.0% | |
| CTGCCGATAAAACTTGCACA+AGG | + | Chr8:35564760-35564779 | MsG0880044100.01.T01:CDS | 45.0% | |
| GACATCCAAACAATTGAGGG+AGG | - | Chr8:35565127-35565146 | None:intergenic | 45.0% | |
| GACCCTGAACGTGATGTAAA+TGG | + | Chr8:35565843-35565862 | MsG0880044100.01.T01:CDS | 45.0% | |
| GCCGAAATGATGAGCAATTG+AGG | + | Chr8:35565787-35565806 | MsG0880044100.01.T01:CDS | 45.0% | |
| GCCTATTCTTACACCACAAG+CGG | + | Chr8:35564388-35564407 | MsG0880044100.01.T01:CDS | 45.0% | |
| GGTGGAAAGAATGACTTCCT+TGG | + | Chr8:35566596-35566615 | MsG0880044100.01.T01:CDS | 45.0% | |
| GTAAGAATAGGCTTGCATGC+TGG | - | Chr8:35564380-35564399 | None:intergenic | 45.0% | |
| GTTATGGCAACAACTAGCGT+TGG | + | Chr8:35563363-35563382 | MsG0880044100.01.T01:exon | 45.0% | |
| TATTACACAAGGCCTCCTGA+GGG | - | Chr8:35567542-35567561 | None:intergenic | 45.0% | |
| TCATGGAATAGGAACCCATC+AGG | + | Chr8:35567473-35567492 | MsG0880044100.01.T01:CDS | 45.0% | |
| TGGAAAGATTGAGGTGGATC+TGG | + | Chr8:35566475-35566494 | MsG0880044100.01.T01:CDS | 45.0% | |
| !! | TCAACTACTAGTTGGCTTGG+TGG | + | Chr8:35566578-35566597 | MsG0880044100.01.T01:CDS | 45.0% |
| !!! | TAATTATAATATATACTTTT+CGG | + | Chr8:35567300-35567319 | MsG0880044100.01.T01:intron | 5.0% |
| AATGGGATGGAGGTTTCGTG+TGG | - | Chr8:35562784-35562803 | None:intergenic | 50.0% | |
| CAATGTACCGTCGGTGATTC+TGG | - | Chr8:35564987-35565006 | None:intergenic | 50.0% | |
| CAGCATGCGTACCGTCAAAT+TGG | + | Chr8:35564709-35564728 | MsG0880044100.01.T01:CDS | 50.0% | |
| CTAGCTGTGCATGATCTTCC+AGG | + | Chr8:35567512-35567531 | MsG0880044100.01.T01:three_prime_UTR | 50.0% | |
| CTTTCATCCACCTGCTCAAC+CGG | + | Chr8:35562828-35562847 | MsG0880044100.01.T01:five_prime_UTR | 50.0% | |
| GAAACAGTTGAGTGAGCAGG+AGG | + | Chr8:35566400-35566419 | MsG0880044100.01.T01:intron | 50.0% | |
| GATCTTCCAGGATTTCCCTC+AGG | + | Chr8:35567524-35567543 | MsG0880044100.01.T01:three_prime_UTR | 50.0% | |
| GATGACAGGAAATGGGATGG+AGG | - | Chr8:35562794-35562813 | None:intergenic | 50.0% | |
| GATGAGCAATTGAGGGATGC+TGG | + | Chr8:35565795-35565814 | MsG0880044100.01.T01:CDS | 50.0% | |
| GCACAAGGACACTGCATGTA+TGG | + | Chr8:35564775-35564794 | MsG0880044100.01.T01:intron | 50.0% | |
| GCGTACCTCCCTCAATTGTT+TGG | + | Chr8:35565119-35565138 | MsG0880044100.01.T01:intron | 50.0% | |
| GTTATGGCAACAACCAGCGT+TGG | + | Chr8:35563044-35563063 | MsG0880044100.01.T01:intron | 50.0% | |
| TTTCAGCTCAGTGCCCTGAT+GGG | - | Chr8:35567490-35567509 | None:intergenic | 50.0% | |
| ! | CTGCGGCTTTGCCAACTTTT+AGG | + | Chr8:35566444-35566463 | MsG0880044100.01.T01:CDS | 50.0% |
| ! | TATCGTTTGGATGCGGACTG+CGG | + | Chr8:35566427-35566446 | MsG0880044100.01.T01:CDS | 50.0% |
| ! | TTTTCAGCTCAGTGCCCTGA+TGG | - | Chr8:35567491-35567510 | None:intergenic | 50.0% |
| CTTCCAGGATTTCCCTCAGG+AGG | + | Chr8:35567527-35567546 | MsG0880044100.01.T01:three_prime_UTR | 55.0% | |
| GGTGTGCCAATCGTACCTTG+TGG | + | Chr8:35565864-35565883 | MsG0880044100.01.T01:CDS | 55.0% | |
| ! | AGAAGGGTTACCGGTTGAGC+AGG | - | Chr8:35562841-35562860 | None:intergenic | 55.0% |
| AGGCCTCCTGAGGGAAATCC+TGG | - | Chr8:35567533-35567552 | None:intergenic | 60.0% | |
| ATGGAGGTTTCGTGTGGCGG+GGG | - | Chr8:35562778-35562797 | None:intergenic | 60.0% | |
| GATGGAGGTTTCGTGTGGCG+GGG | - | Chr8:35562779-35562798 | None:intergenic | 60.0% | |
| GGATGGAGGTTTCGTGTGGC+GGG | - | Chr8:35562780-35562799 | None:intergenic | 60.0% | |
| GGGATGGAGGTTTCGTGTGG+CGG | - | Chr8:35562781-35562800 | None:intergenic | 60.0% | |
| ! | AGGGTTACCGGTTGAGCAGG+TGG | - | Chr8:35562838-35562857 | None:intergenic | 60.0% |
| ! | GAGGTTTCGTGTGGCGGGGG+CGG | - | Chr8:35562775-35562794 | None:intergenic | 70.0% |
| ! | TTTCGTGTGGCGGGGGCGGC+CGG | - | Chr8:35562771-35562790 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 35562637 | 35567774 | 35562637 | ID=MsG0880044100.01;Name=MsG0880044100.01 |
| Chr8 | mRNA | 35562637 | 35567774 | 35562637 | ID=MsG0880044100.01.T01;Parent=MsG0880044100.01;Name=MsG0880044100.01.T01;_AED=0.47;_eAED=0.47;_QI=271|1|1|1|0.75|0.77|9|272|341 |
| Chr8 | exon | 35567448 | 35567774 | 35567448 | ID=MsG0880044100.01.T01:exon:20331;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35566407 | 35566696 | 35566407 | ID=MsG0880044100.01.T01:exon:20330;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35565776 | 35566073 | 35565776 | ID=MsG0880044100.01.T01:exon:20329;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35564928 | 35564998 | 35564928 | ID=MsG0880044100.01.T01:exon:20328;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35564681 | 35564791 | 35564681 | ID=MsG0880044100.01.T01:exon:20327;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35564507 | 35564581 | 35564507 | ID=MsG0880044100.01.T01:exon:20326;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35564351 | 35564409 | 35564351 | ID=MsG0880044100.01.T01:exon:20325;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35563308 | 35563432 | 35563308 | ID=MsG0880044100.01.T01:exon:20324;Parent=MsG0880044100.01.T01 |
| Chr8 | exon | 35562637 | 35562849 | 35562637 | ID=MsG0880044100.01.T01:exon:20323;Parent=MsG0880044100.01.T01 |
| Chr8 | five_prime_UTR | 35562637 | 35562849 | 35562637 | ID=MsG0880044100.01.T01:five_prime_utr;Parent=MsG0880044100.01.T01 |
| Chr8 | five_prime_UTR | 35563308 | 35563365 | 35563308 | ID=MsG0880044100.01.T01:five_prime_utr;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35563366 | 35563432 | 35563366 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35564351 | 35564409 | 35564351 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35564507 | 35564581 | 35564507 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35564681 | 35564791 | 35564681 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35564928 | 35564998 | 35564928 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35565776 | 35566073 | 35565776 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35566407 | 35566696 | 35566407 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | CDS | 35567448 | 35567502 | 35567448 | ID=MsG0880044100.01.T01:cds;Parent=MsG0880044100.01.T01 |
| Chr8 | three_prime_UTR | 35567503 | 35567774 | 35567503 | ID=MsG0880044100.01.T01:three_prime_utr;Parent=MsG0880044100.01.T01 |
| Gene Sequence |
| Protein sequence |
