Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048029.01.T01 | KEH31805.1 | 94.479 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 1.87E-105 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048029.01.T01 | A0A078ISJ6 | 49.367 | 158 | 75 | 2 | 19 | 174 | 7 | 161 | 2.80E-40 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048029.01.T01 | I3T2I3 | 94.479 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 3.78e-105 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048029.01 | MsG0080048700.01 | 0.815611 | 8.457946e-52 | 5.859691e-49 |
| MsG0080048029.01 | MsG0180001173.01 | 0.810958 | 8.895770e-51 | 5.437819e-48 |
| MsG0080048029.01 | MsG0180003858.01 | 0.815779 | 7.760619e-52 | 5.401251e-49 |
| MsG0080048029.01 | MsG0180004754.01 | 0.803305 | 3.713435e-49 | 1.859670e-46 |
| MsG0080048029.01 | MsG0180004958.01 | 0.809787 | 1.592306e-50 | 9.436232e-48 |
| MsG0080048029.01 | MsG0280008280.01 | 0.815770 | 7.796822e-52 | 5.425064e-49 |
| MsG0080048029.01 | MsG0280009514.01 | 0.800515 | 1.390042e-48 | 6.485118e-46 |
| MsG0080048029.01 | MsG0280009515.01 | 0.804502 | 2.094968e-49 | 1.081895e-46 |
| MsG0080048029.01 | MsG0280011258.01 | 0.829523 | 4.909459e-55 | 5.037082e-52 |
| MsG0080048029.01 | MsG0280011282.01 | 0.806702 | 7.236772e-50 | 3.954435e-47 |
| MsG0080048029.01 | MsG0380013476.01 | 0.808297 | 3.319475e-50 | 1.890994e-47 |
| MsG0080048029.01 | MsG0380015548.01 | 0.804902 | 1.728268e-49 | 9.019305e-47 |
| MsG0080048029.01 | MsG0380015677.01 | 0.825189 | 5.368985e-54 | 4.859486e-51 |
| MsG0080048029.01 | MsG0380016703.01 | 0.801031 | 1.090612e-48 | 5.155532e-46 |
| MsG0080048029.01 | MsG0380016994.01 | 0.823806 | 1.136047e-53 | 9.884747e-51 |
| MsG0080048029.01 | MsG0380017159.01 | 0.812069 | 5.102316e-51 | 3.211924e-48 |
| MsG0080048029.01 | MsG0480020495.01 | 0.817139 | 3.849947e-52 | 2.780909e-49 |
| MsG0080048029.01 | MsG0480022325.01 | 0.832568 | 8.777585e-56 | 9.849163e-53 |
| MsG0080048029.01 | MsG0480023620.01 | 0.823700 | 1.202879e-53 | 1.043581e-50 |
| MsG0080048029.01 | MsG0580024330.01 | 0.802469 | 5.527333e-49 | 2.709750e-46 |
| MsG0080048029.01 | MsG0580024489.01 | 0.831259 | 1.847041e-55 | 1.993585e-52 |
| MsG0080048029.01 | MsG0580026593.01 | 0.809159 | 2.172164e-50 | 1.265898e-47 |
| MsG0080048029.01 | MsG0580027208.01 | 0.804792 | 1.822177e-49 | 9.481895e-47 |
| MsG0080048029.01 | MsG0580028060.01 | 0.803989 | 2.678944e-49 | 1.365502e-46 |
| MsG0080048029.01 | MsG0580028176.01 | 0.803416 | 3.522424e-49 | 1.769101e-46 |
| MsG0080048029.01 | MsG0580029640.01 | 0.802951 | 4.395830e-49 | 2.181589e-46 |
| MsG0080048029.01 | MsG0780036752.01 | 0.819069 | 1.409642e-52 | 1.073702e-49 |
| MsG0080048029.01 | MsG0780039712.01 | 0.811892 | 5.577730e-51 | 3.494189e-48 |
| MsG0080048029.01 | MsG0880042961.01 | 0.806974 | 6.338963e-50 | 3.488340e-47 |
| MsG0080048029.01 | MsG0880047226.01 | 0.824385 | 8.307813e-54 | 7.347142e-51 |
| MsG0080048029.01 | MsG0880047431.01 | 0.800992 | 1.111022e-48 | 5.246850e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048029.01.T01 | MTR_4g105310 | 94.479 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 2.26e-109 | 313 |
| MsG0080048029.01.T01 | MTR_4g105310 | 94.479 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 1.04e-108 | 315 |
| MsG0080048029.01.T01 | MTR_3g077410 | 83.553 | 152 | 25 | 0 | 12 | 163 | 1 | 152 | 2.21e-90 | 268 |
| MsG0080048029.01.T01 | MTR_8g099995 | 55.346 | 159 | 68 | 2 | 12 | 170 | 1 | 156 | 2.42e-51 | 168 |
| MsG0080048029.01.T01 | MTR_7g099850 | 51.807 | 166 | 75 | 2 | 12 | 175 | 1 | 163 | 1.06e-48 | 161 |
| MsG0080048029.01.T01 | MTR_1g068970 | 51.205 | 166 | 76 | 2 | 12 | 175 | 1 | 163 | 3.21e-48 | 159 |
| MsG0080048029.01.T01 | MTR_8g098415 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 8.22e-44 | 145 |
| MsG0080048029.01.T01 | MTR_8g098415 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 7.04e-43 | 145 |
| MsG0080048029.01.T01 | MTR_8g098415 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 8.07e-43 | 145 |
| MsG0080048029.01.T01 | MTR_1g100305 | 52.857 | 140 | 63 | 1 | 24 | 163 | 8 | 144 | 3.46e-41 | 141 |
| MsG0080048029.01.T01 | MTR_1g100395 | 54.286 | 140 | 61 | 1 | 24 | 163 | 8 | 144 | 4.93e-41 | 141 |
| MsG0080048029.01.T01 | MTR_6g053600 | 53.623 | 138 | 61 | 1 | 26 | 163 | 4 | 138 | 1.54e-40 | 139 |
| MsG0080048029.01.T01 | MTR_1g100335 | 52.857 | 140 | 63 | 1 | 24 | 163 | 8 | 144 | 7.25e-40 | 136 |
| MsG0080048029.01.T01 | MTR_1g100335 | 52.857 | 140 | 63 | 1 | 24 | 163 | 8 | 144 | 1.47e-39 | 136 |
| MsG0080048029.01.T01 | MTR_1g100335 | 52.857 | 140 | 63 | 1 | 24 | 163 | 8 | 144 | 2.31e-39 | 136 |
| MsG0080048029.01.T01 | MTR_6g053550 | 51.799 | 139 | 64 | 1 | 25 | 163 | 17 | 152 | 1.63e-38 | 134 |
| MsG0080048029.01.T01 | MTR_1g100315 | 50.714 | 140 | 66 | 1 | 24 | 163 | 8 | 144 | 1.54e-37 | 132 |
| MsG0080048029.01.T01 | MTR_8g022500 | 51.587 | 126 | 36 | 1 | 39 | 164 | 417 | 517 | 7.96e-32 | 120 |
| MsG0080048029.01.T01 | MTR_8g098415 | 47.126 | 87 | 46 | 0 | 77 | 163 | 1 | 87 | 9.34e-21 | 86.7 |
| MsG0080048029.01.T01 | MTR_1g068970 | 44.792 | 96 | 51 | 1 | 82 | 175 | 1 | 96 | 2.51e-19 | 82.8 |
| MsG0080048029.01.T01 | MTR_6g081020 | 39.844 | 128 | 67 | 3 | 40 | 157 | 51 | 178 | 2.06e-17 | 79.3 |
| MsG0080048029.01.T01 | MTR_6g041980 | 33.333 | 132 | 83 | 1 | 51 | 177 | 69 | 200 | 2.32e-16 | 75.1 |
| MsG0080048029.01.T01 | MTR_6g041980 | 33.588 | 131 | 82 | 1 | 52 | 177 | 70 | 200 | 2.71e-16 | 75.9 |
| MsG0080048029.01.T01 | MTR_2g079710 | 37.607 | 117 | 65 | 4 | 50 | 161 | 88 | 201 | 1.79e-15 | 73.6 |
| MsG0080048029.01.T01 | MTR_1g100345 | 39.726 | 73 | 44 | 0 | 49 | 121 | 1 | 73 | 1.63e-12 | 60.8 |
| MsG0080048029.01.T01 | MTR_7g076660 | 40.000 | 95 | 49 | 2 | 51 | 141 | 10 | 100 | 5.14e-12 | 63.2 |
| MsG0080048029.01.T01 | MTR_7g076660 | 40.000 | 95 | 49 | 2 | 51 | 141 | 9 | 99 | 6.40e-12 | 63.2 |
| MsG0080048029.01.T01 | MTR_8g089575 | 39.216 | 102 | 61 | 1 | 51 | 151 | 50 | 151 | 7.10e-12 | 63.2 |
| MsG0080048029.01.T01 | MTR_3g009190 | 34.959 | 123 | 74 | 2 | 45 | 161 | 77 | 199 | 1.24e-11 | 62.8 |
| MsG0080048029.01.T01 | MTR_3g009190 | 34.959 | 123 | 74 | 2 | 45 | 161 | 59 | 181 | 1.45e-11 | 62.4 |
| MsG0080048029.01.T01 | MTR_6g453040 | 33.600 | 125 | 77 | 2 | 45 | 163 | 37 | 161 | 5.34e-11 | 60.8 |
| MsG0080048029.01.T01 | MTR_6g453040 | 34.146 | 123 | 75 | 2 | 45 | 161 | 59 | 181 | 5.80e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048029.01.T01 | AT5G50130 | 76.974 | 152 | 34 | 1 | 12 | 163 | 1 | 151 | 2.46e-78 | 234 |
| MsG0080048029.01.T01 | AT5G50130 | 76.974 | 152 | 34 | 1 | 12 | 163 | 1 | 151 | 2.65e-78 | 234 |
| MsG0080048029.01.T01 | AT5G50130 | 76.974 | 152 | 34 | 1 | 12 | 163 | 1 | 151 | 1.78e-77 | 234 |
| MsG0080048029.01.T01 | AT5G50130 | 76.974 | 152 | 34 | 1 | 12 | 163 | 1 | 151 | 2.01e-77 | 234 |
| MsG0080048029.01.T01 | AT5G50130 | 76.974 | 152 | 34 | 1 | 12 | 163 | 1 | 151 | 2.02e-77 | 235 |
| MsG0080048029.01.T01 | AT4G24050 | 57.895 | 152 | 61 | 1 | 12 | 163 | 1 | 149 | 1.54e-54 | 174 |
| MsG0080048029.01.T01 | AT4G24050 | 57.895 | 152 | 61 | 1 | 12 | 163 | 1 | 149 | 4.41e-54 | 175 |
| MsG0080048029.01.T01 | AT5G50130 | 75.000 | 112 | 28 | 0 | 52 | 163 | 7 | 118 | 8.82e-54 | 173 |
| MsG0080048029.01.T01 | AT5G50130 | 75.000 | 112 | 28 | 0 | 52 | 163 | 7 | 118 | 8.87e-54 | 173 |
| MsG0080048029.01.T01 | AT5G50130 | 75.000 | 112 | 28 | 0 | 52 | 163 | 7 | 118 | 1.01e-53 | 173 |
| MsG0080048029.01.T01 | AT5G50130 | 75.000 | 112 | 28 | 0 | 52 | 163 | 7 | 118 | 1.04e-53 | 173 |
| MsG0080048029.01.T01 | AT1G64590 | 60.667 | 150 | 56 | 2 | 12 | 161 | 1 | 147 | 8.60e-45 | 151 |
| MsG0080048029.01.T01 | AT2G37540 | 51.266 | 158 | 72 | 2 | 19 | 174 | 7 | 161 | 1.37e-43 | 146 |
| MsG0080048029.01.T01 | AT2G37540 | 50.307 | 163 | 76 | 2 | 14 | 174 | 2 | 161 | 7.53e-43 | 145 |
| MsG0080048029.01.T01 | AT4G11410 | 50.000 | 152 | 71 | 2 | 24 | 173 | 8 | 156 | 2.33e-42 | 143 |
| MsG0080048029.01.T01 | AT4G11410 | 50.000 | 152 | 71 | 2 | 24 | 173 | 8 | 156 | 9.35e-42 | 143 |
| MsG0080048029.01.T01 | AT4G23420 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 1.10e-40 | 139 |
| MsG0080048029.01.T01 | AT4G23430 | 47.170 | 159 | 79 | 2 | 18 | 174 | 2 | 157 | 1.24e-40 | 140 |
| MsG0080048029.01.T01 | AT4G23430 | 47.170 | 159 | 79 | 2 | 18 | 174 | 2 | 157 | 1.34e-40 | 140 |
| MsG0080048029.01.T01 | AT4G23420 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 1.37e-40 | 138 |
| MsG0080048029.01.T01 | AT4G23420 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 4.72e-40 | 138 |
| MsG0080048029.01.T01 | AT4G23420 | 50.000 | 146 | 70 | 1 | 18 | 163 | 2 | 144 | 4.72e-40 | 138 |
| MsG0080048029.01.T01 | AT4G23430 | 49.306 | 144 | 70 | 1 | 18 | 161 | 2 | 142 | 6.50e-39 | 135 |
| MsG0080048029.01.T01 | AT4G23430 | 49.306 | 144 | 70 | 1 | 18 | 161 | 2 | 142 | 6.55e-39 | 135 |
| MsG0080048029.01.T01 | AT4G23420 | 51.449 | 138 | 64 | 1 | 26 | 163 | 27 | 161 | 1.41e-38 | 135 |
| MsG0080048029.01.T01 | AT5G02540 | 51.829 | 164 | 74 | 2 | 14 | 175 | 2 | 162 | 4.80e-37 | 131 |
| MsG0080048029.01.T01 | AT5G53090 | 43.089 | 123 | 62 | 3 | 43 | 157 | 49 | 171 | 7.51e-19 | 83.2 |
| MsG0080048029.01.T01 | AT4G09750 | 34.058 | 138 | 84 | 1 | 31 | 161 | 19 | 156 | 2.16e-18 | 81.3 |
| MsG0080048029.01.T01 | AT4G27760 | 43.902 | 123 | 61 | 3 | 43 | 157 | 50 | 172 | 1.42e-17 | 79.7 |
| MsG0080048029.01.T01 | AT5G53100 | 37.815 | 119 | 66 | 2 | 47 | 157 | 43 | 161 | 2.50e-16 | 75.9 |
| MsG0080048029.01.T01 | AT4G27440 | 36.842 | 114 | 66 | 3 | 52 | 161 | 92 | 203 | 2.60e-15 | 73.2 |
| MsG0080048029.01.T01 | AT4G27440 | 36.842 | 114 | 66 | 3 | 52 | 161 | 92 | 203 | 2.60e-15 | 73.2 |
| MsG0080048029.01.T01 | AT5G54190 | 34.483 | 116 | 70 | 3 | 52 | 163 | 96 | 209 | 1.04e-14 | 71.6 |
| MsG0080048029.01.T01 | AT1G03630 | 36.207 | 116 | 68 | 3 | 50 | 161 | 91 | 204 | 1.11e-14 | 71.6 |
| MsG0080048029.01.T01 | AT1G03630 | 36.207 | 116 | 68 | 3 | 50 | 161 | 89 | 202 | 1.13e-14 | 71.6 |
Find 34 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCAGGGCCTAGTGGTTT+TGG | 0.230469 | contig177end:-4815 | MsG0080048029.01.T01:CDS |
| ACACTTACATGAGAATATTA+AGG | 0.272671 | contig177end:+4295 | None:intergenic |
| TGCTTGGCAACAAAAGAAAA+AGG | 0.274074 | contig177end:-4877 | MsG0080048029.01.T01:CDS |
| GAAGGGAACAATAAGGTATT+TGG | 0.288975 | contig177end:-4843 | MsG0080048029.01.T01:CDS |
| TCAATTGAAGGTGCTACTTC+TGG | 0.308401 | contig177end:-4522 | MsG0080048029.01.T01:intron |
| AGGTATTTGGCAGGCATTGC+AGG | 0.316972 | contig177end:-4830 | MsG0080048029.01.T01:CDS |
| TTATGCTGAGGTTATTCTAT+TGG | 0.355615 | contig177end:-4385 | MsG0080048029.01.T01:CDS |
| ATGAGAGCTGTTAGGTTTGA+AGG | 0.360069 | contig177end:+4743 | None:intergenic |
| GAAGGTGCTACTTCTGGTAT+TGG | 0.364873 | contig177end:-4516 | MsG0080048029.01.T01:intron |
| TGGTGCCAGGGACATGAAAA+AGG | 0.383783 | contig177end:-4445 | MsG0080048029.01.T01:CDS |
| TGAGAGTTGTGGTTGGTGCC+AGG | 0.429651 | contig177end:-4458 | MsG0080048029.01.T01:CDS |
| CAGCATAAGGACTCTCCTCT+TGG | 0.434439 | contig177end:+4400 | None:intergenic |
| CATCGATGAAGGGAACAATA+AGG | 0.437595 | contig177end:-4850 | MsG0080048029.01.T01:CDS |
| ACATTTGCTACAAATTACTT+AGG | 0.455021 | contig177end:-3918 | MsG0080048029.01.T01:CDS |
| GTTAAGGGCTACAAACTAAA+GGG | 0.456879 | contig177end:+3815 | None:intergenic |
| CACTTACATGAGAATATTAA+GGG | 0.464360 | contig177end:+4296 | None:intergenic |
| AATAGAATAACCTCAGCATA+AGG | 0.472498 | contig177end:+4387 | None:intergenic |
| TACCAGTGATGAGAGCTGTT+AGG | 0.489625 | contig177end:+4735 | None:intergenic |
| TGAGAGCTGTTAGGTTTGAA+GGG | 0.521862 | contig177end:+4744 | None:intergenic |
| GGGCTACAAACTAAAGGGTG+TGG | 0.543355 | contig177end:+3820 | None:intergenic |
| AACCTAACAGCTCTCATCAC+TGG | 0.543509 | contig177end:-4737 | MsG0080048029.01.T01:intron |
| AGTTGGAGGACACGAATGCT+TGG | 0.553276 | contig177end:-4893 | None:intergenic |
| GAGAGTTGTGGTTGGTGCCA+GGG | 0.563988 | contig177end:-4457 | MsG0080048029.01.T01:CDS |
| GAATTTGAGCCAAAACCACT+AGG | 0.566141 | contig177end:+4806 | None:intergenic |
| GCAGGCATTGCAGGGCCTAG+TGG | 0.577354 | contig177end:-4821 | MsG0080048029.01.T01:CDS |
| GGTATTTGGCAGGCATTGCA+GGG | 0.578276 | contig177end:-4829 | MsG0080048029.01.T01:CDS |
| GTGTGGAATTCATATTCTGC+TGG | 0.580320 | contig177end:+3837 | None:intergenic |
| GAGCTGTTAGGTTTGAAGGG+AGG | 0.584163 | contig177end:+4747 | None:intergenic |
| GGAACAATAAGGTATTTGGC+AGG | 0.598423 | contig177end:-4839 | MsG0080048029.01.T01:CDS |
| AAAAGGGAATCATCGATGAA+GGG | 0.604378 | contig177end:-4860 | MsG0080048029.01.T01:CDS |
| AGGAGTGTACTCTCATAACC+TGG | 0.628213 | contig177end:-3967 | MsG0080048029.01.T01:CDS |
| AGAGGAGTGAGAGTTGTGGT+TGG | 0.631623 | contig177end:-4465 | MsG0080048029.01.T01:CDS |
| AGAGGAGAGTCCTTATGCTG+AGG | 0.678257 | contig177end:-4397 | MsG0080048029.01.T01:CDS |
| ACTTACATGAGAATATTAAG+GGG | 0.701725 | contig177end:+4297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAATATATGTTTTGTTT+TGG | - | contig177end:4164-4183 | MsG0080048029.01.T01:intron | 15.0% |
| !! | ATACAATATAATCACAATTG+AGG | + | contig177end:4587-4606 | None:intergenic | 20.0% |
| !! | ATTGTGATTATATTGTATTG+TGG | - | contig177end:4589-4608 | MsG0080048029.01.T01:intron | 20.0% |
| ! | AAGCATAAGAAATGACAATA+AGG | + | contig177end:4464-4483 | None:intergenic | 25.0% |
| ! | ACACTTACATGAGAATATTA+AGG | + | contig177end:4422-4441 | None:intergenic | 25.0% |
| ! | ACTTACATGAGAATATTAAG+GGG | + | contig177end:4420-4439 | None:intergenic | 25.0% |
| ! | CACTTACATGAGAATATTAA+GGG | + | contig177end:4421-4440 | None:intergenic | 25.0% |
| ! | TGCAAGTATATACATAATAC+TGG | + | contig177end:4116-4135 | None:intergenic | 25.0% |
| !! | ACATTTGCTACAAATTACTT+AGG | - | contig177end:4796-4815 | MsG0080048029.01.T01:CDS | 25.0% |
| !! | CAAATCTAAAGCTAAAAACT+CGG | + | contig177end:4397-4416 | None:intergenic | 25.0% |
| !! | TGTCAATTCAATTTTCTCTT+CGG | + | contig177end:4779-4798 | None:intergenic | 25.0% |
| !! | TTTTCATTCTTACATATGAG+AGG | - | contig177end:4824-4843 | MsG0080048029.01.T01:CDS | 25.0% |
| !!! | GTTTTGGAATTTTCAATTGA+AGG | - | contig177end:4180-4199 | MsG0080048029.01.T01:intron | 25.0% |
| AATAGAATAACCTCAGCATA+AGG | + | contig177end:4330-4349 | None:intergenic | 30.0% | |
| AGTGAAAGAAAAAATCCAAG+AGG | - | contig177end:4299-4318 | MsG0080048029.01.T01:intron | 30.0% | |
| TCTGACTACAATATAAAACC+CGG | + | contig177end:4515-4534 | None:intergenic | 30.0% | |
| TGATTCATCAGTTGAGAAAA+GGG | - | contig177end:4485-4504 | MsG0080048029.01.T01:CDS | 30.0% | |
| TTAGCACAACATGAATTAAC+AGG | + | contig177end:4685-4704 | None:intergenic | 30.0% | |
| TTATGCTGAGGTTATTCTAT+TGG | - | contig177end:4329-4348 | MsG0080048029.01.T01:CDS | 30.0% | |
| TTGATTCATCAGTTGAGAAA+AGG | - | contig177end:4484-4503 | MsG0080048029.01.T01:CDS | 30.0% | |
| AAAAAGGGAATCATCGATGA+AGG | - | contig177end:3853-3872 | MsG0080048029.01.T01:CDS | 35.0% | |
| AAAAGGGAATCATCGATGAA+GGG | - | contig177end:3854-3873 | MsG0080048029.01.T01:CDS | 35.0% | |
| GCTTGGCAACAAAAGAAAAA+GGG | - | contig177end:3838-3857 | MsG0080048029.01.T01:CDS | 35.0% | |
| TAGAGAATCGTGATCAAATG+TGG | - | contig177end:4552-4571 | MsG0080048029.01.T01:intron | 35.0% | |
| TGCTTGGCAACAAAAGAAAA+AGG | - | contig177end:3837-3856 | MsG0080048029.01.T01:CDS | 35.0% | |
| ! | GAAGGGAACAATAAGGTATT+TGG | - | contig177end:3871-3890 | MsG0080048029.01.T01:CDS | 35.0% |
| !! | TTGTTTTGCAGAAACAATGC+AGG | - | contig177end:4727-4746 | MsG0080048029.01.T01:intron | 35.0% |
| AAAAAGAGGAGTGAGAGTTG+TGG | - | contig177end:4245-4264 | MsG0080048029.01.T01:intron | 40.0% | |
| AGATTTGCGACTGCAATCTA+GGG | + | contig177end:4645-4664 | None:intergenic | 40.0% | |
| ATGAGAGCTGTTAGGTTTGA+AGG | + | contig177end:3974-3993 | None:intergenic | 40.0% | |
| CATCGATGAAGGGAACAATA+AGG | - | contig177end:3864-3883 | MsG0080048029.01.T01:CDS | 40.0% | |
| GAATTTGAGCCAAAACCACT+AGG | + | contig177end:3911-3930 | None:intergenic | 40.0% | |
| GTGTGGAATTCATATTCTGC+TGG | + | contig177end:4880-4899 | None:intergenic | 40.0% | |
| TGAGAGCTGTTAGGTTTGAA+GGG | + | contig177end:3973-3992 | None:intergenic | 40.0% | |
| ! | GCTAGAGTGTTAGCAAAAAG+AGG | - | contig177end:4231-4250 | MsG0080048029.01.T01:intron | 40.0% |
| ! | GGAACAATAAGGTATTTGGC+AGG | - | contig177end:3875-3894 | MsG0080048029.01.T01:CDS | 40.0% |
| ! | TTTTCTCTTCGGAGAATTCC+AGG | + | contig177end:4768-4787 | None:intergenic | 40.0% |
| !! | TCAATTGAAGGTGCTACTTC+TGG | - | contig177end:4192-4211 | MsG0080048029.01.T01:intron | 40.0% |
| AACCTAACAGCTCTCATCAC+TGG | - | contig177end:3977-3996 | MsG0080048029.01.T01:CDS | 45.0% | |
| AGTTGAGAAAAGGGAGATCC+GGG | - | contig177end:4494-4513 | MsG0080048029.01.T01:CDS | 45.0% | |
| CAGTTGAGAAAAGGGAGATC+CGG | - | contig177end:4493-4512 | MsG0080048029.01.T01:CDS | 45.0% | |
| GAGATTTGCGACTGCAATCT+AGG | + | contig177end:4646-4665 | None:intergenic | 45.0% | |
| TACCAGTGATGAGAGCTGTT+AGG | + | contig177end:3982-4001 | None:intergenic | 45.0% | |
| ! | AGGAGTGTACTCTCATAACC+TGG | - | contig177end:4747-4766 | MsG0080048029.01.T01:CDS | 45.0% |
| !! | CATAGCCTTTTTCATGTCCC+TGG | + | contig177end:4277-4296 | None:intergenic | 45.0% |
| !! | GAAGGTGCTACTTCTGGTAT+TGG | - | contig177end:4198-4217 | MsG0080048029.01.T01:intron | 45.0% |
| AGAGGAGAGTCCTTATGCTG+AGG | - | contig177end:4317-4336 | MsG0080048029.01.T01:CDS | 50.0% | |
| AGAGGAGTGAGAGTTGTGGT+TGG | - | contig177end:4249-4268 | MsG0080048029.01.T01:intron | 50.0% | |
| CAGCATAAGGACTCTCCTCT+TGG | + | contig177end:4317-4336 | None:intergenic | 50.0% | |
| GAGCTGTTAGGTTTGAAGGG+AGG | + | contig177end:3970-3989 | None:intergenic | 50.0% | |
| ! | AGGTATTTGGCAGGCATTGC+AGG | - | contig177end:3884-3903 | MsG0080048029.01.T01:CDS | 50.0% |
| ! | ATTGCAGGGCCTAGTGGTTT+TGG | - | contig177end:3899-3918 | MsG0080048029.01.T01:CDS | 50.0% |
| ! | GGTATTTGGCAGGCATTGCA+GGG | - | contig177end:3885-3904 | MsG0080048029.01.T01:CDS | 50.0% |
| ! | TGGTGCCAGGGACATGAAAA+AGG | - | contig177end:4269-4288 | MsG0080048029.01.T01:intron | 50.0% |
| ! | TGAGAGTTGTGGTTGGTGCC+AGG | - | contig177end:4256-4275 | MsG0080048029.01.T01:intron | 55.0% |
| !! | GAGAGTTGTGGTTGGTGCCA+GGG | - | contig177end:4257-4276 | MsG0080048029.01.T01:intron | 55.0% |
| ! | GCAGGCATTGCAGGGCCTAG+TGG | - | contig177end:3893-3912 | MsG0080048029.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig177end | gene | 3830 | 4906 | 3830 | ID=MsG0080048029.01;Name=MsG0080048029.01 |
| contig177end | mRNA | 3830 | 4906 | 3830 | ID=MsG0080048029.01.T01;Parent=MsG0080048029.01;Name=MsG0080048029.01.T01;_AED=0.50;_eAED=0.54;_QI=6|1|0.66|1|1|1|3|0|187 |
| contig177end | exon | 4738 | 4906 | 4738 | ID=MsG0080048029.01.T01:exon:30977;Parent=MsG0080048029.01.T01 |
| contig177end | exon | 4303 | 4534 | 4303 | ID=MsG0080048029.01.T01:exon:30978;Parent=MsG0080048029.01.T01 |
| contig177end | exon | 3830 | 3998 | 3830 | ID=MsG0080048029.01.T01:exon:30979;Parent=MsG0080048029.01.T01 |
| contig177end | five_prime_UTR | 4901 | 4906 | 4901 | ID=MsG0080048029.01.T01:five_prime_utr;Parent=MsG0080048029.01.T01 |
| contig177end | CDS | 4738 | 4900 | 4738 | ID=MsG0080048029.01.T01:cds;Parent=MsG0080048029.01.T01 |
| contig177end | CDS | 4303 | 4534 | 4303 | ID=MsG0080048029.01.T01:cds;Parent=MsG0080048029.01.T01 |
| contig177end | CDS | 3830 | 3998 | 3830 | ID=MsG0080048029.01.T01:cds;Parent=MsG0080048029.01.T01 |
| Gene Sequence |
| Protein sequence |
