AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010005.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010005.01.T01 MTR_2g076070 98.238 227 4 0 1 227 1 227 1.85e-167 461
MsG0280010005.01.T01 MTR_2g076010 90.749 227 21 0 1 227 1 227 6.64e-157 434
MsG0280010005.01.T01 MTR_8g058350 75.330 227 51 2 5 226 10 236 6.23e-126 356
MsG0280010005.01.T01 MTR_2g076070 97.561 164 4 0 64 227 1 164 1.91e-116 329
MsG0280010005.01.T01 MTR_2g076010 89.634 164 17 0 64 227 1 164 1.69e-108 309
MsG0280010005.01.T01 MTR_8g058700 47.525 101 22 2 90 190 13 82 5.93e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010005.01.T01 AT1G78780 71.186 236 55 3 5 227 17 252 6.45e-121 344
MsG0280010005.01.T01 AT1G78780 71.186 236 55 3 5 227 17 252 6.45e-121 344
MsG0280010005.01.T01 AT1G78780 69.874 239 59 3 1 227 1 238 1.52e-120 342
MsG0280010005.01.T01 AT1G78780 68.619 239 59 4 1 227 1 235 3.64e-116 331
MsG0280010005.01.T01 AT1G78780 70.455 176 40 2 64 227 1 176 1.98e-87 256

Find 68 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCAAGTTCTTTGTTAA+TGG 0.183252 2:+62767566 MsG0280010005.01.T01:CDS
GTAAACAACTTATGATTAAT+TGG 0.225426 2:-62769935 None:intergenic
CTGAAATTGCTTTCAAGTTT+AGG 0.246221 2:+62769054 MsG0280010005.01.T01:CDS
CTAAACTTGAAAGCAATTTC+AGG 0.282078 2:-62769053 None:intergenic
TGCTTTCAAGTTTAGGCATT+GGG 0.293525 2:+62769061 MsG0280010005.01.T01:CDS
GTCTCTTCATTTGACTTGTA+TGG 0.318507 2:-62768948 None:intergenic
GTATTTCTAGACTCAATCTA+TGG 0.321440 2:+62770004 MsG0280010005.01.T01:three_prime_UTR
GTTTCCTCCAATGATCCTTC+TGG 0.340734 2:-62767461 None:intergenic
GTAGGGGCATGTCCCTTAAA+AGG 0.343475 2:-62769098 None:intergenic
TTGTATGGCTTGAAATCTTC+AGG 0.351240 2:-62768933 None:intergenic
TCCTTCCTTCTTCAAAGAGC+TGG 0.367470 2:-62767330 None:intergenic
TATGACCCAGGAGAGTTGTT+TGG 0.376206 2:+62769862 MsG0280010005.01.T01:CDS
GAATGGACATGCTGAAGTTT+TGG 0.380812 2:-62769911 None:intergenic
GACACACAAGATCCGCTTGC+AGG 0.389775 2:+62767520 MsG0280010005.01.T01:CDS
TGCTATCTCCGCTTGATAGA+AGG 0.400178 2:-62769888 None:intergenic
AGGCATTGGGGATTCTTTGA+AGG 0.405743 2:+62769074 MsG0280010005.01.T01:CDS
TCTTGGAAAAGCTGATTTGA+AGG 0.414467 2:-62768991 None:intergenic
GATGGTCCAATTCTCTGGCT+TGG 0.418419 2:+62769127 MsG0280010005.01.T01:CDS
ATGGTCCAATTCTCTGGCTT+GGG 0.433013 2:+62769128 MsG0280010005.01.T01:CDS
ATTTCCCATGCAAATCCTCT+TGG 0.434442 2:-62769008 None:intergenic
GAGTTCCCAAGCCAGAGAAT+TGG 0.445368 2:-62769133 None:intergenic
GGAAAGATGGTCCAATTCTC+TGG 0.445571 2:+62769122 MsG0280010005.01.T01:CDS
GTCAACCAGCTCTTTGAAGA+AGG 0.445909 2:+62767325 MsG0280010005.01.T01:CDS
TTTAAGGGACATGCCCCTAC+TGG 0.446687 2:+62769101 MsG0280010005.01.T01:CDS
CTAGGTGGATGACACTTTGA+AGG 0.455213 2:+62769819 MsG0280010005.01.T01:intron
AGGCCTCCAAACAACTCTCC+TGG 0.465379 2:-62769868 None:intergenic
ACTTATGATTAATTGGAGAA+TGG 0.470422 2:-62769928 None:intergenic
TGCAAAATGCTATTAAGTCA+TGG 0.470507 2:+62767486 MsG0280010005.01.T01:CDS
TATTTCTAGACTCAATCTAT+GGG 0.474520 2:+62770005 MsG0280010005.01.T01:three_prime_UTR
CACTTTGAAGGTTGAAGAAG+TGG 0.475985 2:+62769831 MsG0280010005.01.T01:CDS
CATGGTGGCCCTCCCACCTA+TGG 0.478252 2:+62767298 MsG0280010005.01.T01:CDS
GGAATGGCCAGAAGGATCAT+TGG 0.485397 2:+62767454 MsG0280010005.01.T01:intron
TTGCTTTCAAGTTTAGGCAT+TGG 0.497447 2:+62769060 MsG0280010005.01.T01:CDS
TGCTATTAAGTCATGGGAGA+TGG 0.500588 2:+62767493 MsG0280010005.01.T01:CDS
CATGTGAATATAGTAACCTT+TGG 0.502580 2:+62769974 MsG0280010005.01.T01:three_prime_UTR
GACCCAGGAGAGTTGTTTGG+AGG 0.521378 2:+62769865 MsG0280010005.01.T01:CDS
TTTCTAATTGCAGGCAGGGA+GGG 0.527343 2:+62768849 MsG0280010005.01.T01:intron
GGCCTCCAAACAACTCTCCT+GGG 0.528244 2:-62769867 None:intergenic
GCAAAATGCTATTAAGTCAT+GGG 0.533576 2:+62767487 MsG0280010005.01.T01:CDS
ACATGCCCCTACTGGAAAGA+TGG 0.534599 2:+62769109 MsG0280010005.01.T01:CDS
GAGAATATCCAGTGGAGACA+TGG 0.538003 2:+62767280 MsG0280010005.01.T01:CDS
CTCTGGCTTGGGAACTCTCA+AGG 0.542832 2:+62769139 MsG0280010005.01.T01:CDS
CTGGTTGACAAGACCATAGG+TGG 0.543209 2:-62767311 None:intergenic
GAGGGCCACCATGTCTCCAC+TGG 0.548695 2:-62767288 None:intergenic
ATTGGACCATCTTTCCAGTA+GGG 0.558086 2:-62769115 None:intergenic
AATTGGACCATCTTTCCAGT+AGG 0.570938 2:-62769116 None:intergenic
ACCAGCTCTTTGAAGAAGGA+AGG 0.578694 2:+62767329 MsG0280010005.01.T01:CDS
GTGGAGATTTACTATGACCC+AGG 0.582286 2:+62769850 MsG0280010005.01.T01:CDS
GCAGAGGAAACTCTAAGCAT+AGG 0.582569 2:+62768879 MsG0280010005.01.T01:CDS
GCTTTCAAGTTTAGGCATTG+GGG 0.594203 2:+62769062 MsG0280010005.01.T01:CDS
TGACAAGACCATAGGTGGGA+GGG 0.603232 2:-62767306 None:intergenic
AGCTCTTTAGTAACTTGACA+TGG 0.604708 2:+62767207 MsG0280010005.01.T01:exon
TTTGGAGGCCTTCTATCAAG+CGG 0.613986 2:+62769880 MsG0280010005.01.T01:CDS
TTGGACCATCTTTCCAGTAG+GGG 0.615171 2:-62769114 None:intergenic
TAGAAATACAGCTTGACCAA+AGG 0.616044 2:-62769990 None:intergenic
ATGGCCAGAAGGATCATTGG+AGG 0.617256 2:+62767457 MsG0280010005.01.T01:CDS
GAGCTGGTTGACAAGACCAT+AGG 0.618838 2:-62767314 None:intergenic
AACTTGAAAGCAATTTCAGG+TGG 0.634134 2:-62769050 None:intergenic
GAAATCATTAAAGTTTACAC+AGG 0.640637 2:+62769026 MsG0280010005.01.T01:CDS
TGGTCTTGAAGTCCTGCAAG+CGG 0.649941 2:-62767532 None:intergenic
ATTTCTAATTGCAGGCAGGG+AGG 0.661707 2:+62768848 MsG0280010005.01.T01:intron
GTGATTGAACTATGGAAACA+TGG 0.661827 2:+62770077 MsG0280010005.01.T01:three_prime_UTR
AATATCCAGTGGAGACATGG+TGG 0.668708 2:+62767283 MsG0280010005.01.T01:CDS
CAGGGAGGGATTAACTGCAG+AGG 0.669645 2:+62768863 MsG0280010005.01.T01:CDS
TTGACAAGACCATAGGTGGG+AGG 0.674543 2:-62767307 None:intergenic
ATGAAGCTGAGAATATCCAG+TGG 0.685948 2:+62767272 MsG0280010005.01.T01:CDS
ATTTCTAGACTCAATCTATG+GGG 0.686943 2:+62770006 MsG0280010005.01.T01:three_prime_UTR
TGGTTGACAAGACCATAGGT+GGG 0.689395 2:-62767310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTTAAATATAATAA+AGG + Chr2:62769419-62769438 MsG0280010005.01.T01:intron 0.0%
!! AATTTAAATATAATAAAGGA+AGG + Chr2:62769423-62769442 MsG0280010005.01.T01:intron 10.0%
!! TAAAATAAATGATAATCTAA+TGG - Chr2:62769702-62769721 None:intergenic 10.0%
!!! GATAAAAATTATTTCAATTT+TGG + Chr2:62767867-62767886 MsG0280010005.01.T01:intron 10.0%
!! GAATTATACAAAATTATTAG+TGG + Chr2:62767752-62767771 MsG0280010005.01.T01:intron 15.0%
!! TATGAATTATAATTCTATGA+AGG + Chr2:62767661-62767680 MsG0280010005.01.T01:intron 15.0%
!! TTAAAATGAGAAATTTAACA+TGG - Chr2:62769279-62769298 None:intergenic 15.0%
!!! AACAATAATTTTTTTAACCT+AGG + Chr2:62769801-62769820 MsG0280010005.01.T01:intron 15.0%
!!! ATTGAAATAATTTTTATCCA+AGG - Chr2:62767865-62767884 None:intergenic 15.0%
!!! TTCAAATTTCAATGTTTTTT+TGG - Chr2:62769498-62769517 None:intergenic 15.0%
!!! TTTTCTTAACAAATTTTTGT+AGG + Chr2:62767433-62767452 MsG0280010005.01.T01:intron 15.0%
!! AAAATTGAGAAAGAATTACA+TGG - Chr2:62767417-62767436 None:intergenic 20.0%
!! AATTAATAAGAAAATACCCA+TGG - Chr2:62769329-62769348 None:intergenic 20.0%
!! AATTATAATTCTATGAAGGA+CGG + Chr2:62767665-62767684 MsG0280010005.01.T01:intron 20.0%
!! AGATTAATGAATATACCAAT+AGG - Chr2:62768002-62768021 None:intergenic 20.0%
!! AGTGATGTATAAAATATAGA+GGG - Chr2:62769777-62769796 None:intergenic 20.0%
!! ATGATCTGAATTTAATTGTT+TGG + Chr2:62769186-62769205 MsG0280010005.01.T01:intron 20.0%
!! ATTAATAAGAAAATACCCAT+GGG - Chr2:62769328-62769347 None:intergenic 20.0%
!! GTAAACAACTTATGATTAAT+TGG - Chr2:62769938-62769957 None:intergenic 20.0%
!! TAATATATGAAACATGGATA+CGG - Chr2:62767825-62767844 None:intergenic 20.0%
!! TAGTGATGTATAAAATATAG+AGG - Chr2:62769778-62769797 None:intergenic 20.0%
!! TATTATTAATTGGATTCAAG+TGG + Chr2:62768577-62768596 MsG0280010005.01.T01:intron 20.0%
!!! AAATTCAAGTTCTTTGTTAA+TGG + Chr2:62767566-62767585 MsG0280010005.01.T01:CDS 20.0%
!!! AACAGCTATATTTTTTACTT+CGG - Chr2:62768146-62768165 None:intergenic 20.0%
!!! AAGTTAGCAATGATTTTTTT+AGG + Chr2:62768500-62768519 MsG0280010005.01.T01:intron 20.0%
!!! AATAATTTTTTTAACCTAGG+TGG + Chr2:62769804-62769823 MsG0280010005.01.T01:intron 20.0%
!!! AATTCAATATTTCTAATTGC+AGG + Chr2:62768840-62768859 MsG0280010005.01.T01:intron 20.0%
!!! AGTTAGCAATGATTTTTTTA+GGG + Chr2:62768501-62768520 MsG0280010005.01.T01:intron 20.0%
!!! GTAAATGATTCAAATTTGTT+TGG + Chr2:62767595-62767614 MsG0280010005.01.T01:intron 20.0%
!!! TAAATTTTAATGTTATCCCT+TGG - Chr2:62769409-62769428 None:intergenic 20.0%
!!! TATCAAAATTTGAGATCAAT+TGG + Chr2:62768749-62768768 MsG0280010005.01.T01:intron 20.0%
!!! TGAGAAATTTAAAATGATCA+AGG - Chr2:62769234-62769253 None:intergenic 20.0%
!!! TTAACAAATTTTTGTAGGAA+TGG + Chr2:62767438-62767457 MsG0280010005.01.T01:intron 20.0%
!!! TTTATCTTTTTAATGGGTTT+AGG + Chr2:62767918-62767937 MsG0280010005.01.T01:intron 20.0%
! AAATGGAGAATAAGATTAAG+AGG - Chr2:62767376-62767395 None:intergenic 25.0%
! AATGGAGAATAAGATTAAGA+GGG - Chr2:62767375-62767394 None:intergenic 25.0%
! ACTTATGATTAATTGGAGAA+TGG - Chr2:62769931-62769950 None:intergenic 25.0%
! AGTGATATGATATATGTGAT+AGG - Chr2:62769621-62769640 None:intergenic 25.0%
! ATATGATATATGTGATAGGT+CGG - Chr2:62769617-62769636 None:intergenic 25.0%
! CGATCATAATATATGAAACA+TGG - Chr2:62767831-62767850 None:intergenic 25.0%
! GAAATCATTAAAGTTTACAC+AGG + Chr2:62769026-62769045 MsG0280010005.01.T01:CDS 25.0%
! TATTAAACTTCGATTCTAAG+AGG - Chr2:62768722-62768741 None:intergenic 25.0%
! TTAATAAGAAAATACCCATG+GGG - Chr2:62769327-62769346 None:intergenic 25.0%
!! ACAAAGAACTTGAATTTTTC+AGG - Chr2:62767563-62767582 None:intergenic 25.0%
!! CAAAGAACTTGAATTTTTCA+GGG - Chr2:62767562-62767581 None:intergenic 25.0%
!! GAAATAATTTTTATCCAAGG+TGG - Chr2:62767862-62767881 None:intergenic 25.0%
!! TTAATTTTTACTGCAAGCAA+AGG + Chr2:62769295-62769314 MsG0280010005.01.T01:intron 25.0%
!! TTTGATTCGTCAAAAAACAA+AGG + Chr2:62768430-62768449 MsG0280010005.01.T01:intron 25.0%
!!! GTTAGCAATGATTTTTTTAG+GGG + Chr2:62768502-62768521 MsG0280010005.01.T01:intron 25.0%
!!! TATTTCTAGACTCAATCTAT+GGG + Chr2:62770005-62770024 MsG0280010005.01.T01:three_prime_UTR 25.0%
AAAAAGTTGTTCTCATAAGG+TGG - Chr2:62769750-62769769 None:intergenic 30.0%
AAACAAAACACCAATGTTCT+TGG - Chr2:62768202-62768221 None:intergenic 30.0%
AAATAGAAAGGAAGATACCA+AGG + Chr2:62769389-62769408 MsG0280010005.01.T01:intron 30.0%
AATAGAAAGGAAGATACCAA+GGG + Chr2:62769390-62769409 MsG0280010005.01.T01:intron 30.0%
AGGAATGAGTTATGGTAATT+CGG - Chr2:62768702-62768721 None:intergenic 30.0%
AGTAGAATACGTAGAAAACT+TGG + Chr2:62768054-62768073 MsG0280010005.01.T01:intron 30.0%
AGTTATGGTAATTCGGAATT+CGG - Chr2:62768695-62768714 None:intergenic 30.0%
ATAATCTAGAGAGGAAGAAA+TGG - Chr2:62767393-62767412 None:intergenic 30.0%
ATCAGACTATACTTACCAAA+CGG + Chr2:62768669-62768688 MsG0280010005.01.T01:intron 30.0%
ATTAATTGGATTCAAGTGGT+TGG + Chr2:62768581-62768600 MsG0280010005.01.T01:intron 30.0%
CATGTGAATATAGTAACCTT+TGG + Chr2:62769974-62769993 MsG0280010005.01.T01:three_prime_UTR 30.0%
CTAAACTTGAAAGCAATTTC+AGG - Chr2:62769056-62769075 None:intergenic 30.0%
GATGTATAAAATATAGAGGG+TGG - Chr2:62769774-62769793 None:intergenic 30.0%
GCAAAATGCTATTAAGTCAT+GGG + Chr2:62767487-62767506 MsG0280010005.01.T01:CDS 30.0%
GGTAAAAAGTTGTTCTCATA+AGG - Chr2:62769753-62769772 None:intergenic 30.0%
TGCAAAATGCTATTAAGTCA+TGG + Chr2:62767486-62767505 MsG0280010005.01.T01:CDS 30.0%
TTACATGGTATAATCTAGAG+AGG - Chr2:62767402-62767421 None:intergenic 30.0%
! AATATTTCTAATTGCAGGCA+GGG + Chr2:62768845-62768864 MsG0280010005.01.T01:intron 30.0%
! AATTTTTATCCAAGGTGGAT+AGG - Chr2:62767857-62767876 None:intergenic 30.0%
! ATTCTAAGAGGAATGAGTTA+TGG - Chr2:62768710-62768729 None:intergenic 30.0%
! ATTTCTAGACTCAATCTATG+GGG + Chr2:62770006-62770025 MsG0280010005.01.T01:three_prime_UTR 30.0%
! CTTGTACTTTGCTTAGATTT+TGG + Chr2:62768234-62768253 MsG0280010005.01.T01:intron 30.0%
! TGTGTTTTGTGATTGAACTA+TGG + Chr2:62770069-62770088 MsG0280010005.01.T01:three_prime_UTR 30.0%
!! ATTAATTGTTTTGCGTGTGT+AGG + Chr2:62769342-62769361 MsG0280010005.01.T01:intron 30.0%
!! ATTCTTTGAAGGTCCTTTTA+AGG + Chr2:62769085-62769104 MsG0280010005.01.T01:CDS 30.0%
!! CTGAAATTGCTTTCAAGTTT+AGG + Chr2:62769054-62769073 MsG0280010005.01.T01:CDS 30.0%
!! GTATTTCTAGACTCAATCTA+TGG + Chr2:62770004-62770023 MsG0280010005.01.T01:three_prime_UTR 30.0%
!! TTCTTTGAAGGTCCTTTTAA+GGG + Chr2:62769086-62769105 MsG0280010005.01.T01:CDS 30.0%
!!! TTTTTTCCTAAATCATCGCT+TGG - Chr2:62767955-62767974 None:intergenic 30.0%
AACTTGAAAGCAATTTCAGG+TGG - Chr2:62769053-62769072 None:intergenic 35.0%
ACAAGTGAAGGAATCACTTT+AGG - Chr2:62768116-62768135 None:intergenic 35.0%
AGCTCTTTAGTAACTTGACA+TGG + Chr2:62767207-62767226 MsG0280010005.01.T01:exon 35.0%
ATGAAACATGGATACGGATA+CGG - Chr2:62767819-62767838 None:intergenic 35.0%
ATTCAAACCCAGCATCATAA+CGG - Chr2:62768395-62768414 None:intergenic 35.0%
GAACAAACGATTGTGAAGAT+GGG + Chr2:62768359-62768378 MsG0280010005.01.T01:intron 35.0%
GAGGCTGTAATCAAATAGAA+AGG + Chr2:62769377-62769396 MsG0280010005.01.T01:intron 35.0%
GTGATTGAACTATGGAAACA+TGG + Chr2:62770077-62770096 MsG0280010005.01.T01:three_prime_UTR 35.0%
GTGGAGCAAGAGAATAAAAA+CGG - Chr2:62769731-62769750 None:intergenic 35.0%
TAGAAATACAGCTTGACCAA+AGG - Chr2:62769993-62770012 None:intergenic 35.0%
TGGAGCAAGAGAATAAAAAC+GGG - Chr2:62769730-62769749 None:intergenic 35.0%
TTGTATGGCTTGAAATCTTC+AGG - Chr2:62768936-62768955 None:intergenic 35.0%
! AATTTTCCCGTTATGATGCT+GGG + Chr2:62768385-62768404 MsG0280010005.01.T01:intron 35.0%
! CAATATTTCTAATTGCAGGC+AGG + Chr2:62768844-62768863 MsG0280010005.01.T01:intron 35.0%
! TGTTCTTTCTAGTAGTAGAG+CGG + Chr2:62768173-62768192 MsG0280010005.01.T01:intron 35.0%
! TGTTTTCCAAGCGATGATTT+AGG + Chr2:62767946-62767965 MsG0280010005.01.T01:intron 35.0%
! TTCAAATCAGCTTTTCCAAG+AGG + Chr2:62768993-62769012 MsG0280010005.01.T01:CDS 35.0%
! TTTTCCAAGAGGATTTGCAT+GGG + Chr2:62769004-62769023 MsG0280010005.01.T01:CDS 35.0%
!! GTCTCTTCATTTGACTTGTA+TGG - Chr2:62768951-62768970 None:intergenic 35.0%
!! TCTTGGAAAAGCTGATTTGA+AGG - Chr2:62768994-62769013 None:intergenic 35.0%
!! TGCTTTCAAGTTTAGGCATT+GGG + Chr2:62769061-62769080 MsG0280010005.01.T01:CDS 35.0%
!! TTGCTTTCAAGTTTAGGCAT+TGG + Chr2:62769060-62769079 MsG0280010005.01.T01:CDS 35.0%
!!! CTTGAATTTTTCAGGGACAA+TGG - Chr2:62767555-62767574 None:intergenic 35.0%
AATTGGACCATCTTTCCAGT+AGG - Chr2:62769119-62769138 None:intergenic 40.0%
AGCAAGAGAATAAAAACGGG+TGG - Chr2:62769727-62769746 None:intergenic 40.0%
AGGGTGTGATGATTTCACTT+TGG - Chr2:62767356-62767375 None:intergenic 40.0%
ATGAAGCTGAGAATATCCAG+TGG + Chr2:62767272-62767291 MsG0280010005.01.T01:CDS 40.0%
ATTGGACCATCTTTCCAGTA+GGG - Chr2:62769118-62769137 None:intergenic 40.0%
ATTTCCCATGCAAATCCTCT+TGG - Chr2:62769011-62769030 None:intergenic 40.0%
CCATCAAAGACAAATCGTTC+AGG + Chr2:62768612-62768631 MsG0280010005.01.T01:intron 40.0%
CCTGAACGATTTGTCTTTGA+TGG - Chr2:62768615-62768634 None:intergenic 40.0%
CGAACAAACGATTGTGAAGA+TGG + Chr2:62768358-62768377 MsG0280010005.01.T01:intron 40.0%
CGCATGTAAGAGACTTTGTA+TGG + Chr2:62768322-62768341 MsG0280010005.01.T01:intron 40.0%
GCTTACATCATCGATCCTAT+TGG + Chr2:62767984-62768003 MsG0280010005.01.T01:intron 40.0%
GGAGAATGAGTTCGATTTCT+AGG + Chr2:62768633-62768652 MsG0280010005.01.T01:intron 40.0%
TATGAAGGACGGACAATCAT+CGG + Chr2:62767676-62767695 MsG0280010005.01.T01:intron 40.0%
TGCTATTAAGTCATGGGAGA+TGG + Chr2:62767493-62767512 MsG0280010005.01.T01:CDS 40.0%
TTCAAACCCAGCATCATAAC+GGG - Chr2:62768394-62768413 None:intergenic 40.0%
TTCGGATGATACACAAGTGA+AGG - Chr2:62768128-62768147 None:intergenic 40.0%
! AATTCAGTTCGTGTCGTTGT+CGG - Chr2:62767737-62767756 None:intergenic 40.0%
! CACTTTGAAGGTTGAAGAAG+TGG + Chr2:62769831-62769850 MsG0280010005.01.T01:CDS 40.0%
! CTTTTCCAAGAGGATTTGCA+TGG + Chr2:62769003-62769022 MsG0280010005.01.T01:CDS 40.0%
! GAATGGACATGCTGAAGTTT+TGG - Chr2:62769914-62769933 None:intergenic 40.0%
! GAATTTTCCCGTTATGATGC+TGG + Chr2:62768384-62768403 MsG0280010005.01.T01:intron 40.0%
! TTTTTGTAGGAATGGCCAGA+AGG + Chr2:62767446-62767465 MsG0280010005.01.T01:intron 40.0%
!! GCTTTCAAGTTTAGGCATTG+GGG + Chr2:62769062-62769081 MsG0280010005.01.T01:CDS 40.0%
AATATCCAGTGGAGACATGG+TGG + Chr2:62767283-62767302 MsG0280010005.01.T01:CDS 45.0%
ATCAGTATCTGTGTCGTGTC+TGG + Chr2:62767784-62767803 MsG0280010005.01.T01:intron 45.0%
ATTTCTAATTGCAGGCAGGG+AGG + Chr2:62768848-62768867 MsG0280010005.01.T01:intron 45.0%
CATGGATACGGATACGGATA+CGG - Chr2:62767813-62767832 None:intergenic 45.0%
CTAGGTGGATGACACTTTGA+AGG + Chr2:62769819-62769838 MsG0280010005.01.T01:intron 45.0%
GAGAATATCCAGTGGAGACA+TGG + Chr2:62767280-62767299 MsG0280010005.01.T01:CDS 45.0%
GCAGAGGAAACTCTAAGCAT+AGG + Chr2:62768879-62768898 MsG0280010005.01.T01:CDS 45.0%
GGAAAGATGGTCCAATTCTC+TGG + Chr2:62769122-62769141 MsG0280010005.01.T01:CDS 45.0%
GTGGAGATTTACTATGACCC+AGG + Chr2:62769850-62769869 MsG0280010005.01.T01:CDS 45.0%
GTTTCCTCCAATGATCCTTC+TGG - Chr2:62767464-62767483 None:intergenic 45.0%
TAATTCGGAATTCGGCCGTT+TGG - Chr2:62768687-62768706 None:intergenic 45.0%
TATGACCCAGGAGAGTTGTT+TGG + Chr2:62769862-62769881 MsG0280010005.01.T01:CDS 45.0%
TATGTGATAGGTCGGAGATG+TGG - Chr2:62769609-62769628 None:intergenic 45.0%
TCCTTCCTTCTTCAAAGAGC+TGG - Chr2:62767333-62767352 None:intergenic 45.0%
TGCTATCTCCGCTTGATAGA+AGG - Chr2:62769891-62769910 None:intergenic 45.0%
TGGTTGACAAGACCATAGGT+GGG - Chr2:62767313-62767332 None:intergenic 45.0%
TTGGACCATCTTTCCAGTAG+GGG - Chr2:62769117-62769136 None:intergenic 45.0%
TTTACTGCAAGCAAAGGCCA+TGG + Chr2:62769301-62769320 MsG0280010005.01.T01:intron 45.0%
TTTCTAATTGCAGGCAGGGA+GGG + Chr2:62768849-62768868 MsG0280010005.01.T01:intron 45.0%
TTTGGAGGCCTTCTATCAAG+CGG + Chr2:62769880-62769899 MsG0280010005.01.T01:CDS 45.0%
! ACCAGCTCTTTGAAGAAGGA+AGG + Chr2:62767329-62767348 MsG0280010005.01.T01:CDS 45.0%
! ATGGTCCAATTCTCTGGCTT+GGG + Chr2:62769128-62769147 MsG0280010005.01.T01:CDS 45.0%
! CTTCAAAGTGTCATCCACCT+AGG - Chr2:62769821-62769840 None:intergenic 45.0%
! GTCAACCAGCTCTTTGAAGA+AGG + Chr2:62767325-62767344 MsG0280010005.01.T01:CDS 45.0%
! GTGTAGGTTGACTTTGTACG+AGG + Chr2:62769358-62769377 MsG0280010005.01.T01:intron 45.0%
!! AGGCATTGGGGATTCTTTGA+AGG + Chr2:62769074-62769093 MsG0280010005.01.T01:CDS 45.0%
!!! AATTTTTGAATATTATTAAT+TGG + Chr2:62768567-62768586 MsG0280010005.01.T01:intron 5.0%
!!! ATTTTTATTTATCTTTTTAA+TGG + Chr2:62767911-62767930 MsG0280010005.01.T01:intron 5.0%
!!! TTTTTATTTATCTTTTTAAT+GGG + Chr2:62767912-62767931 MsG0280010005.01.T01:intron 5.0%
ACATGCCCCTACTGGAAAGA+TGG + Chr2:62769109-62769128 MsG0280010005.01.T01:CDS 50.0%
AGAAAATACCCATGGGGCCA+TGG - Chr2:62769321-62769340 None:intergenic 50.0%
ATGGCCAGAAGGATCATTGG+AGG + Chr2:62767457-62767476 MsG0280010005.01.T01:CDS 50.0%
CTGGTTGACAAGACCATAGG+TGG - Chr2:62767314-62767333 None:intergenic 50.0%
GAGCTGGTTGACAAGACCAT+AGG - Chr2:62767317-62767336 None:intergenic 50.0%
GAGTTCCCAAGCCAGAGAAT+TGG - Chr2:62769136-62769155 None:intergenic 50.0%
GATGGTCCAATTCTCTGGCT+TGG + Chr2:62769127-62769146 MsG0280010005.01.T01:CDS 50.0%
GATTAGGCGTGTCCTGGTAT+CGG + Chr2:62767698-62767717 MsG0280010005.01.T01:intron 50.0%
GGAATGGCCAGAAGGATCAT+TGG + Chr2:62767454-62767473 MsG0280010005.01.T01:intron 50.0%
GGACGGACAATCATCGGATT+AGG + Chr2:62767682-62767701 MsG0280010005.01.T01:intron 50.0%
TGACAAGACCATAGGTGGGA+GGG - Chr2:62767309-62767328 None:intergenic 50.0%
TGATAGGTCGGAGATGTGGT+AGG - Chr2:62769605-62769624 None:intergenic 50.0%
TTGACAAGACCATAGGTGGG+AGG - Chr2:62767310-62767329 None:intergenic 50.0%
TTTAAGGGACATGCCCCTAC+TGG + Chr2:62769101-62769120 MsG0280010005.01.T01:CDS 50.0%
! GTAGGGGCATGTCCCTTAAA+AGG - Chr2:62769101-62769120 None:intergenic 50.0%
! TGATCGACTCCTATCCACCT+TGG + Chr2:62767845-62767864 MsG0280010005.01.T01:intron 50.0%
! TGGTCTTGAAGTCCTGCAAG+CGG - Chr2:62767535-62767554 None:intergenic 50.0%
AGAGCGGCTGCCAAGAACAT+TGG + Chr2:62768189-62768208 MsG0280010005.01.T01:intron 55.0%
AGGCCTCCAAACAACTCTCC+TGG - Chr2:62769871-62769890 None:intergenic 55.0%
CACGACACGTTTCCGATACC+AGG - Chr2:62767713-62767732 None:intergenic 55.0%
CAGGGAGGGATTAACTGCAG+AGG + Chr2:62768863-62768882 MsG0280010005.01.T01:CDS 55.0%
GACACACAAGATCCGCTTGC+AGG + Chr2:62767520-62767539 MsG0280010005.01.T01:CDS 55.0%
GACCCAGGAGAGTTGTTTGG+AGG + Chr2:62769865-62769884 MsG0280010005.01.T01:CDS 55.0%
GGCCTCCAAACAACTCTCCT+GGG - Chr2:62769870-62769889 None:intergenic 55.0%
! TCATCGGATTAGGCGTGTCC+TGG + Chr2:62767692-62767711 MsG0280010005.01.T01:intron 55.0%
!! CTCTGGCTTGGGAACTCTCA+AGG + Chr2:62769139-62769158 MsG0280010005.01.T01:CDS 55.0%
AAGCAAAGGCCATGGCCCCA+TGG + Chr2:62769309-62769328 MsG0280010005.01.T01:intron 60.0%
AGCAAAGGCCATGGCCCCAT+GGG + Chr2:62769310-62769329 MsG0280010005.01.T01:intron 60.0%
CATGGTGGCCCTCCCACCTA+TGG + Chr2:62767298-62767317 MsG0280010005.01.T01:CDS 65.0%
GAGGGCCACCATGTCTCCAC+TGG - Chr2:62767291-62767310 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 62767202 62770120 62767202 ID=MsG0280010005.01;Name=MsG0280010005.01
Chr2 mRNA 62767202 62770120 62767202 ID=MsG0280010005.01.T01;Parent=MsG0280010005.01;Name=MsG0280010005.01.T01;_AED=0.43;_eAED=0.43;_QI=24|1|1|1|1|1|4|178|227
Chr2 exon 62767202 62767357 62767202 ID=MsG0280010005.01.T01:exon:4724;Parent=MsG0280010005.01.T01
Chr2 exon 62767455 62767587 62767455 ID=MsG0280010005.01.T01:exon:4725;Parent=MsG0280010005.01.T01
Chr2 exon 62768862 62769160 62768862 ID=MsG0280010005.01.T01:exon:4726;Parent=MsG0280010005.01.T01
Chr2 exon 62769823 62770120 62769823 ID=MsG0280010005.01.T01:exon:4727;Parent=MsG0280010005.01.T01
Chr2 five_prime_UTR 62767202 62767225 62767202 ID=MsG0280010005.01.T01:five_prime_utr;Parent=MsG0280010005.01.T01
Chr2 CDS 62767226 62767357 62767226 ID=MsG0280010005.01.T01:cds;Parent=MsG0280010005.01.T01
Chr2 CDS 62767455 62767587 62767455 ID=MsG0280010005.01.T01:cds;Parent=MsG0280010005.01.T01
Chr2 CDS 62768862 62769160 62768862 ID=MsG0280010005.01.T01:cds;Parent=MsG0280010005.01.T01
Chr2 CDS 62769823 62769942 62769823 ID=MsG0280010005.01.T01:cds;Parent=MsG0280010005.01.T01
Chr2 three_prime_UTR 62769943 62770120 62769943 ID=MsG0280010005.01.T01:three_prime_utr;Parent=MsG0280010005.01.T01
Gene Sequence

>MsG0280010005.01.T01

ATGGCTAACATAGTTGCAAAAGACAAGTACAGATCAATTTTACATGATGAAGCTGAGAATATCCAGTGGAGACATGGTGGCCCTCCCACCTATGGTCTTGTCAACCAGCTCTTTGAAGAAGGAAGGACCAAAGAATGGCCAGAAGGATCATTGGAGGAAACAGTGCAAAATGCTATTAAGTCATGGGAGATGGAGCTGACACACAAGATCCGCTTGCAGGACTTCAAGACCATTGTCCCTGAAAAATTCAAGTTCTTTGTTAATGGCAGGGAGGGATTAACTGCAGAGGAAACTCTAAGCATAGGAAGTTATAATGCATTGTTGAAAAGTTCTCTGCCTGAAGATTTCAAGCCATACAAGTCAAATGAAGAGACTTTTGATTCATCTCATGAAGCCTTCAAATCAGCTTTTCCAAGAGGATTTGCATGGGAAATCATTAAAGTTTACACAGGACCACCTGAAATTGCTTTCAAGTTTAGGCATTGGGGATTCTTTGAAGGTCCTTTTAAGGGACATGCCCCTACTGGAAAGATGGTCCAATTCTCTGGCTTGGGAACTCTCAAGGTGGATGACACTTTGAAGGTTGAAGAAGTGGAGATTTACTATGACCCAGGAGAGTTGTTTGGAGGCCTTCTATCAAGCGGAGATAGCACCAAAACTTCAGCATGTCCATTCTCCAATTAA
Protein sequence

>MsG0280010005.01.T01

MANIVAKDKYRSILHDEAENIQWRHGGPPTYGLVNQLFEEGRTKEWPEGSLEETVQNAIKSWEMELTHKIRLQDFKTIVPEKFKFFVNGREGLTAEETLSIGSYNALLKSSLPEDFKPYKSNEETFDSSHEAFKSAFPRGFAWEIIKVYTGPPEIAFKFRHWGFFEGPFKGHAPTGKMVQFSGLGTLKVDDTLKVEEVEIYYDPGELFGGLLSSGDSTKTSACPFSN*