AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032026.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032026.01.T02 MTR_6g034870 45.783 249 41 7 1 163 5 245 8.26e-16 77.0
MsG0680032026.01.T02 MTR_6g034870 48.101 158 1 4 46 151 122 250 3.28e-13 69.3
MsG0680032026.01.T02 MTR_1g094130 42.051 195 82 4 1 164 31 225 8.34e-12 64.3
MsG0680032026.01.T01 MTR_6g034870 46.124 258 33 7 1 152 1 258 3.23e-19 83.6
MsG0680032026.01.T01 MTR_6g034870 54.225 142 6 5 50 136 122 259 6.34e-12 62.8
MsG0680032026.01.T01 MTR_1g094130 46.632 193 64 5 1 154 27 219 2.55e-15 71.6
MsG0680032026.01.T01 MTR_6g034905 87.898 157 13 2 1 154 1 154 3.12e-15 68.9
MsG0680032026.01.T01 MTR_6g034920 50.340 147 25 3 1 103 1 143 2.40e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 135 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAATTGTTTGCTGAAATT+TGG 0.094511 6:-32182283 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.293720 6:-32182810 None:intergenic
GGTGATTTATACTTGTAAAC+TGG 0.325772 6:-32182362 None:intergenic
GCGTATTTGTATGGCTTAGA+TGG 0.355782 6:-32182325 None:intergenic
GGTGACTTGTAATTGTAAAC+TGG 0.358196 6:-32182840 None:intergenic
TCCTCCTTACCACTACTAAA+TGG 0.365236 6:+32182968 MsG0680032026.01.T02:CDS
GGAGACTTGTACTTGTAAAC+TGG 0.368192 6:-32182637 None:intergenic
GGAGGTGAGTAGACGGGTGG+AGG 0.373273 6:-32182813 None:intergenic
GGTGGTGAATAGACGGGTGG+AGG 0.385833 6:-32182762 None:intergenic
GGTGAGTACACTGGTGGAGG+TGG 0.386356 6:-32182505 None:intergenic
GTAATTGTTTGCTGAAATTT+GGG 0.386463 6:-32182282 None:intergenic
GGTGAGTAGACAGGTGGAGG+AGG 0.386771 6:-32182709 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.388771 6:-32182557 None:intergenic
GGTGACTTATATTTATAAAC+AGG 0.391402 6:-32182413 None:intergenic
TAAGAGTAATGGAGGCCATT+TGG 0.393938 6:-32182223 None:intergenic
AGGTGGAGGTGGTGAGTAGA+TGG 0.395147 6:-32182443 None:intergenic
GGTGGTGAGTAGACAGGTGG+GGG 0.401670 6:-32182386 None:intergenic
GGGGACTTGTATTTGTAAAC+TGG 0.418805 6:-32182789 None:intergenic
GGGGAGGTGGTGAGTAGACG+GGG 0.420559 6:-32182615 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.428477 6:-32182658 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.432340 6:-32182560 None:intergenic
ACTTGTAAACTGGGTGGTGG+TGG 0.432848 6:-32182352 None:intergenic
GGTGAGTAAGTAGGAGGAGG+AGG 0.439172 6:-32182912 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.439184 6:-32182389 None:intergenic
GGTGGGGAAGCGTATTTGTA+TGG 0.439487 6:-32182334 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.441074 6:-32182661 None:intergenic
GGTGAATAGACGGGTGGAGG+GGG 0.445371 6:-32182759 None:intergenic
GGAGACTTATACTTGTAAAC+TGG 0.445660 6:-32182891 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.450883 6:-32182712 None:intergenic
GGAGGAGGTGAGTAGACGGG+TGG 0.451688 6:-32182816 None:intergenic
GTGGTGAATAGACGGGTGGA+GGG 0.453631 6:-32182761 None:intergenic
GGAAAATATGAGGTTCCAAA+TGG 0.456109 6:+32182208 None:intergenic
TGGTGAATAGACGGGTGGAG+GGG 0.457814 6:-32182760 None:intergenic
GAGGACTTGTACTTGTAAAC+TGG 0.458453 6:-32182535 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.458453 6:-32182688 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.460087 6:-32182484 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.460087 6:-32182587 None:intergenic
GGTGAATAGACGGGAGGAGG+TGG 0.460193 6:-32182861 None:intergenic
GTGAGTACACTGGTGGAGGT+GGG 0.460710 6:-32182504 None:intergenic
GAGTAGACGGGTGGAGGAGG+AGG 0.471785 6:-32182554 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.483587 6:-32182457 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.483654 6:-32182526 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.483654 6:-32182679 None:intergenic
CTTGTAAACTGGGTGGTGGT+GGG 0.488120 6:-32182351 None:intergenic
TTGCTGAAATTTGGGATGGC+AGG 0.492467 6:-32182274 None:intergenic
GTGAATAGACGGGTGGAGGG+GGG 0.494290 6:-32182758 None:intergenic
GAGGTGGTGAGTAGACAGGT+GGG 0.495523 6:-32182388 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.500985 6:-32182809 None:intergenic
TGAGTACACTGGTGGAGGTG+GGG 0.503087 6:-32182503 None:intergenic
GGTGGTGAATAGACGGGAGG+AGG 0.504571 6:-32182864 None:intergenic
GGTGGTGAGTACACTGGTGG+AGG 0.506192 6:-32182508 None:intergenic
GGTGAGTAGACAGGTGGAGG+TGG 0.506411 6:-32182454 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.510657 6:-32182808 None:intergenic
TATTTATAAACAGGTGGAGG+TGG 0.516161 6:-32182404 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6:-32182475 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6:-32182578 None:intergenic
AGGTGGTGAGTAGATGGTGG+AGG 0.521393 6:-32182437 None:intergenic
TAGATATAATGTGGTGGAGG+TGG 0.521642 6:-32182933 None:intergenic
CGTAGGAAGAAGTATACCTT+GGG 0.523963 6:-32183007 None:intergenic
GGTGGTGGTGGTGAGTAGAC+GGG 0.529501 6:-32182667 None:intergenic
GGTGGTGAGTAAGTAGGAGG+AGG 0.529938 6:-32182915 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.530290 6:-32182566 None:intergenic
TTGTACTTGTAAACTGGTGG+TGG 0.532190 6:-32182529 None:intergenic
TTGTACTTGTAAACTGGTGG+TGG 0.532190 6:-32182682 None:intergenic
TGGTGAGTAGATGGTGGAGG+TGG 0.533412 6:-32182434 None:intergenic
GGTGGAGGTGGTGAGTAAGT+AGG 0.536815 6:-32182921 None:intergenic
TAGTAGTGGTAAGGAGGAGG+TGG 0.537644 6:-32182963 None:intergenic
GGGGACTTGTACTTGTAAAC+CGG 0.538056 6:-32182739 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.541551 6:-32182392 None:intergenic
TACTTGTAAACCGGTGGAGG+TGG 0.542895 6:-32182730 None:intergenic
TGGTGGAGGTGGTGAATAGA+CGG 0.542965 6:-32182871 None:intergenic
GTGACTTGTAATTGTAAACT+GGG 0.543533 6:-32182839 None:intergenic
TGGAGGTGGTGAGTAGATGG+TGG 0.543920 6:-32182440 None:intergenic
TGGTGGTGGTGGTGAGTAGA+CGG 0.545412 6:-32182668 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.545632 6:-32182882 None:intergenic
GGGAGGTGGTGAGTAGACGG+GGG 0.547890 6:-32182614 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.549566 6:-32182718 None:intergenic
CAATGCAATAGTAAGAGTAA+TGG 0.551028 6:-32182234 None:intergenic
GACTTGTATTTGTAAACTGG+TGG 0.551063 6:-32182786 None:intergenic
ACCACCATTTAGTAGTGGTA+AGG 0.552807 6:-32182972 None:intergenic
TATTTGTAAACTGGTGGAGG+TGG 0.555899 6:-32182780 None:intergenic
GGAGGTGGTGAGTAAGTAGG+AGG 0.556059 6:-32182918 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.556465 6:-32182463 None:intergenic
GTGAGTAGACAGGTGGAGGA+GGG 0.557278 6:-32182708 None:intergenic
GGTGGAGGTGGTGAATAGAC+GGG 0.558507 6:-32182870 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.560893 6:-32182567 None:intergenic
TGGTGGAGGTGGTGAATAGA+CGG 0.563999 6:-32182769 None:intergenic
GAGACTTGTACTTGTAAACT+GGG 0.565827 6:-32182636 None:intergenic
TGTCTACTCACCACCTCCAC+CGG 0.569681 6:+32182720 MsG0680032026.01.T01:CDS
TGAGTAGACAGGTGGAGGAG+GGG 0.571354 6:-32182707 None:intergenic
TTGTATTTGTAAACTGGTGG+AGG 0.576012 6:-32182783 None:intergenic
TTGTACTTGTAAACCGGTGG+AGG 0.578530 6:-32182733 None:intergenic
TTATATTTATAAACAGGTGG+AGG 0.579141 6:-32182407 None:intergenic
GTGATTTATACTTGTAAACT+GGG 0.580140 6:-32182361 None:intergenic
GACTTATACTTGTAAACTGG+TGG 0.580181 6:-32182888 None:intergenic
GGTGGAGGTGGTGAATAGAC+GGG 0.581891 6:-32182768 None:intergenic
GACTTATATTTATAAACAGG+TGG 0.583330 6:-32182410 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.584342 6:-32182460 None:intergenic
GGTGGTGGTGAGTAGACGGG+TGG 0.586082 6:-32182664 None:intergenic
TGCAATAGTAAGAGTAATGG+AGG 0.586366 6:-32182231 None:intergenic
TTATACTTGTAAACTGGTGG+AGG 0.588467 6:-32182885 None:intergenic
GAGTAGATATAATGTGGTGG+AGG 0.594587 6:-32182936 None:intergenic
TATACTTGTAAACTGGGTGG+TGG 0.596083 6:-32182355 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6:-32182478 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6:-32182581 None:intergenic
TTGTAAACTGGGTGGTGGTG+GGG 0.599564 6:-32182350 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.601010 6:-32182481 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.601010 6:-32182584 None:intergenic
GGTGGTGGTGGTGAGTACAC+TGG 0.601096 6:-32182514 None:intergenic
ATTTAGTAGTGGTAAGGAGG+AGG 0.602889 6:-32182966 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6:-32182563 None:intergenic
AGGTGGTGAGTAGACAGGTG+GGG 0.609414 6:-32182387 None:intergenic
ACGTAGGAAGAAGTATACCT+TGG 0.611149 6:-32183008 None:intergenic
ACCATTTAGTAGTGGTAAGG+AGG 0.618262 6:-32182969 None:intergenic
CATAAACCACCATTTAGTAG+TGG 0.625993 6:-32182977 None:intergenic
GACTTGTACTTGTAAACCGG+TGG 0.627752 6:-32182736 None:intergenic
GCTTAGATGGTGGTGTGGAG+AGG 0.629091 6:-32182312 None:intergenic
GGTGAAGAGTAGATATAATG+TGG 0.631465 6:-32182942 None:intergenic
TTGTTTGCTGAAATTTGGGA+TGG 0.632942 6:-32182278 None:intergenic
GGTGGTGGTGAGTACACTGG+TGG 0.636351 6:-32182511 None:intergenic
GGAGGTGGTGAATAGACGGG+TGG 0.644341 6:-32182765 None:intergenic
GAAGAGTAGATATAATGTGG+TGG 0.646587 6:-32182939 None:intergenic
TCCTTACCACTACTAAATGG+TGG 0.648183 6:+32182971 MsG0680032026.01.T02:CDS
GACTTGTACTTGTAAACTGG+TGG 0.653522 6:-32182532 None:intergenic
GTATGGCTTAGATGGTGGTG+TGG 0.654029 6:-32182317 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.654911 6:-32182715 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.657109 6:-32182685 None:intergenic
GACTTGTACTTGTAAACTGG+GGG 0.662032 6:-32182634 None:intergenic
GGAGGTGGTGAATAGACGGG+AGG 0.663340 6:-32182867 None:intergenic
TGGTTTATGATAGTATCCCA+AGG 0.674911 6:+32182991 MsG0680032026.01.T02:CDS
GACTTGTAATTGTAAACTGG+GGG 0.685386 6:-32182837 None:intergenic
TATTTGTATGGCTTAGATGG+TGG 0.691843 6:-32182322 None:intergenic
ATTTATACTTGTAAACTGGG+TGG 0.710027 6:-32182358 None:intergenic
AGACTTGTACTTGTAAACTG+GGG 0.710365 6:-32182635 None:intergenic
TGACTTGTAATTGTAAACTG+GGG 0.754896 6:-32182838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GACTTATATTTATAAACAGG+TGG - Chr6:32182413-32182432 None:intergenic 25.0%
! GGTGACTTATATTTATAAAC+AGG - Chr6:32182416-32182435 None:intergenic 25.0%
! GTGATTTATACTTGTAAACT+GGG - Chr6:32182364-32182383 None:intergenic 25.0%
! TTATATTTATAAACAGGTGG+AGG - Chr6:32182410-32182429 None:intergenic 25.0%
!! GTAATTGTTTGCTGAAATTT+GGG - Chr6:32182285-32182304 None:intergenic 25.0%
ATTTATACTTGTAAACTGGG+TGG - Chr6:32182361-32182380 None:intergenic 30.0%
CAATGCAATAGTAAGAGTAA+TGG - Chr6:32182237-32182256 None:intergenic 30.0%
GGTGATTTATACTTGTAAAC+TGG - Chr6:32182365-32182384 None:intergenic 30.0%
! CGTAATTGTTTGCTGAAATT+TGG - Chr6:32182286-32182305 None:intergenic 30.0%
! GTGACTTGTAATTGTAAACT+GGG - Chr6:32182842-32182861 None:intergenic 30.0%
! TGACTTGTAATTGTAAACTG+GGG - Chr6:32182841-32182860 None:intergenic 30.0%
AGACTTGTACTTGTAAACTG+GGG - Chr6:32182638-32182657 None:intergenic 35.0%
CATAAACCACCATTTAGTAG+TGG - Chr6:32182980-32182999 None:intergenic 35.0%
GAAGAGTAGATATAATGTGG+TGG - Chr6:32182942-32182961 None:intergenic 35.0%
GACTTATACTTGTAAACTGG+TGG - Chr6:32182891-32182910 None:intergenic 35.0%
GACTTGTAATTGTAAACTGG+GGG - Chr6:32182840-32182859 None:intergenic 35.0%
GACTTGTATTTGTAAACTGG+TGG - Chr6:32182789-32182808 None:intergenic 35.0%
GAGACTTGTACTTGTAAACT+GGG - Chr6:32182639-32182658 None:intergenic 35.0%
GGAGACTTATACTTGTAAAC+TGG - Chr6:32182894-32182913 None:intergenic 35.0%
GGTGAAGAGTAGATATAATG+TGG - Chr6:32182945-32182964 None:intergenic 35.0%
TATTTATAAACAGGTGGAGG+TGG - Chr6:32182407-32182426 None:intergenic 35.0%
TATTTGTATGGCTTAGATGG+TGG - Chr6:32182325-32182344 None:intergenic 35.0%
TGCAATAGTAAGAGTAATGG+AGG - Chr6:32182234-32182253 None:intergenic 35.0%
TGGTTTATGATAGTATCCCA+AGG + Chr6:32182991-32183010 MsG0680032026.01.T02:CDS 35.0%
TTATACTTGTAAACTGGTGG+AGG - Chr6:32182888-32182907 None:intergenic 35.0%
TTGTATTTGTAAACTGGTGG+AGG - Chr6:32182786-32182805 None:intergenic 35.0%
! GGTGACTTGTAATTGTAAAC+TGG - Chr6:32182843-32182862 None:intergenic 35.0%
! TTGTTTGCTGAAATTTGGGA+TGG - Chr6:32182281-32182300 None:intergenic 35.0%
! TTTTTGTGTGTGTTGTACGT+AGG - Chr6:32183027-32183046 None:intergenic 35.0%
ACCACCATTTAGTAGTGGTA+AGG - Chr6:32182975-32182994 None:intergenic 40.0%
ACCATTTAGTAGTGGTAAGG+AGG - Chr6:32182972-32182991 None:intergenic 40.0%
ATTTAGTAGTGGTAAGGAGG+AGG - Chr6:32182969-32182988 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - Chr6:32182484-32182503 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - Chr6:32182484-32182503 None:intergenic 40.0%
GAGGACTTGTACTTGTAAAC+TGG - Chr6:32182538-32182557 None:intergenic 40.0%
GAGTAGATATAATGTGGTGG+AGG - Chr6:32182939-32182958 None:intergenic 40.0%
GCGTATTTGTATGGCTTAGA+TGG - Chr6:32182328-32182347 None:intergenic 40.0%
GGAGACTTGTACTTGTAAAC+TGG - Chr6:32182640-32182659 None:intergenic 40.0%
GGGGACTTGTATTTGTAAAC+TGG - Chr6:32182792-32182811 None:intergenic 40.0%
TATACTTGTAAACTGGGTGG+TGG - Chr6:32182358-32182377 None:intergenic 40.0%
TATTTGTAAACTGGTGGAGG+TGG - Chr6:32182783-32182802 None:intergenic 40.0%
TCCTCCTTACCACTACTAAA+TGG + Chr6:32182968-32182987 MsG0680032026.01.T02:CDS 40.0%
TCCTTACCACTACTAAATGG+TGG + Chr6:32182971-32182990 MsG0680032026.01.T02:CDS 40.0%
TTGTAATTGTAAACTGGGGG+AGG - Chr6:32182837-32182856 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+AGG - Chr6:32182481-32182500 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - Chr6:32182481-32182500 None:intergenic 40.0%
! ACGTAGGAAGAAGTATACCT+TGG - Chr6:32183011-32183030 None:intergenic 40.0%
! CGTAGGAAGAAGTATACCTT+GGG - Chr6:32183010-32183029 None:intergenic 40.0%
! TAAGAGTAATGGAGGCCATT+TGG - Chr6:32182226-32182245 None:intergenic 40.0%
! TAGATATAATGTGGTGGAGG+TGG - Chr6:32182936-32182955 None:intergenic 40.0%
GACTTGTACTTGTAAACCGG+TGG - Chr6:32182739-32182758 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+CGG - Chr6:32182487-32182506 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - Chr6:32182487-32182506 None:intergenic 45.0%
TAATTGTAAACTGGGGGAGG+AGG - Chr6:32182834-32182853 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - Chr6:32182478-32182497 None:intergenic 45.0%
TTGTACTTGTAAACCGGTGG+AGG - Chr6:32182736-32182755 None:intergenic 45.0%
TTGTACTTGTAAACTGGGGG+AGG - Chr6:32182634-32182653 None:intergenic 45.0%
! TTGCTGAAATTTGGGATGGC+AGG - Chr6:32182277-32182296 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - Chr6:32182529-32182548 None:intergenic 45.0%
TACTTGTAAACCGGTGGAGG+TGG - Chr6:32182733-32182752 None:intergenic 50.0%
TACTTGTAAACTGGGGGAGG+TGG - Chr6:32182631-32182650 None:intergenic 50.0%
TAGTAGTGGTAAGGAGGAGG+TGG - Chr6:32182966-32182985 None:intergenic 50.0%
TGGTGGAGGTGGTGAATAGA+CGG - Chr6:32182772-32182791 None:intergenic 50.0%
! ACTTGTAAACTGGGTGGTGG+TGG - Chr6:32182355-32182374 None:intergenic 50.0%
! CTTGTAAACTGGGTGGTGGT+GGG - Chr6:32182354-32182373 None:intergenic 50.0%
! GGTGGGGAAGCGTATTTGTA+TGG - Chr6:32182337-32182356 None:intergenic 50.0%
! GTATGGCTTAGATGGTGGTG+TGG - Chr6:32182320-32182339 None:intergenic 50.0%
! TTGTAAACTGGGTGGTGGTG+GGG - Chr6:32182353-32182372 None:intergenic 50.0%
AGGTGGAGGTGGTGAGTAGA+TGG - Chr6:32182396-32182415 None:intergenic 55.0%
AGGTGGTGAGTAGACAGGTG+GGG - Chr6:32182390-32182409 None:intergenic 55.0%
GAGGTGGTGAGTAGACAGGT+GGG - Chr6:32182391-32182410 None:intergenic 55.0%
GGAGGTGGTGAGTAAGTAGG+AGG - Chr6:32182921-32182940 None:intergenic 55.0%
GGTGAGTAAGTAGGAGGAGG+AGG - Chr6:32182915-32182934 None:intergenic 55.0%
GGTGGAGGTGGTGAATAGAC+GGG - Chr6:32182771-32182790 None:intergenic 55.0%
GGTGGAGGTGGTGAGTAAGT+AGG - Chr6:32182924-32182943 None:intergenic 55.0%
GGTGGTGAGTAAGTAGGAGG+AGG - Chr6:32182918-32182937 None:intergenic 55.0%
GTGAGTACACTGGTGGAGGT+GGG - Chr6:32182507-32182526 None:intergenic 55.0%
GTGAGTAGACAGGTGGAGGA+GGG - Chr6:32182711-32182730 None:intergenic 55.0%
GTGGTGAATAGACGGGTGGA+GGG - Chr6:32182764-32182783 None:intergenic 55.0%
TGAGTACACTGGTGGAGGTG+GGG - Chr6:32182506-32182525 None:intergenic 55.0%
TGAGTAGACAGGTGGAGGAG+GGG - Chr6:32182710-32182729 None:intergenic 55.0%
TGGAGGTGGTGAGTAGATGG+TGG - Chr6:32182443-32182462 None:intergenic 55.0%
TGGTGAATAGACGGGTGGAG+GGG - Chr6:32182763-32182782 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - Chr6:32182467-32182486 None:intergenic 55.0%
TGTCTACTCACCACCTCCAC+CGG + Chr6:32182394-32182413 MsG0680032026.01.T01:CDS 55.0%
! AGGTGGTGAGTAGATGGTGG+AGG - Chr6:32182440-32182459 None:intergenic 55.0%
! GCTTAGATGGTGGTGTGGAG+AGG - Chr6:32182315-32182334 None:intergenic 55.0%
!! TGGTGAGTAGATGGTGGAGG+TGG - Chr6:32182437-32182456 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+CGG - Chr6:32182671-32182690 None:intergenic 55.0%
GGAGGTGGTGAATAGACGGG+AGG - Chr6:32182768-32182787 None:intergenic 60.0%
GGAGGTGGTGAATAGACGGG+TGG - Chr6:32182768-32182787 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - Chr6:32182392-32182411 None:intergenic 60.0%
GGTGAATAGACGGGAGGAGG+TGG - Chr6:32182864-32182883 None:intergenic 60.0%
GGTGAATAGACGGGTGGAGG+GGG - Chr6:32182762-32182781 None:intergenic 60.0%
GGTGAGTACACTGGTGGAGG+TGG - Chr6:32182508-32182527 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+AGG - Chr6:32182457-32182476 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+TGG - Chr6:32182457-32182476 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - Chr6:32182395-32182414 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - Chr6:32182395-32182414 None:intergenic 60.0%
GGTGGTGAATAGACGGGAGG+AGG - Chr6:32182867-32182886 None:intergenic 60.0%
GGTGGTGAATAGACGGGTGG+AGG - Chr6:32182765-32182784 None:intergenic 60.0%
GGTGGTGAGTACACTGGTGG+AGG - Chr6:32182511-32182530 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+AGG - Chr6:32182389-32182408 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - Chr6:32182389-32182408 None:intergenic 60.0%
GTGAATAGACGGGTGGAGGG+GGG - Chr6:32182761-32182780 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - Chr6:32182660-32182679 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - Chr6:32182659-32182678 None:intergenic 60.0%
TGGGGGAGGAGGTGAGTAGA+CGG - Chr6:32182823-32182842 None:intergenic 60.0%
TGGGGGAGGTGGTGAGTAGA+CGG - Chr6:32182620-32182639 None:intergenic 60.0%
! GGTGGTGGTGAGTACACTGG+TGG - Chr6:32182514-32182533 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTACAC+TGG - Chr6:32182517-32182536 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTAGAC+GGG - Chr6:32182670-32182689 None:intergenic 60.0%
AGGTGGTGAGTAGACGGGGG+AGG - Chr6:32182614-32182633 None:intergenic 65.0%
GAGTAGACGGGTGGAGGAGG+AGG - Chr6:32182557-32182576 None:intergenic 65.0%
GGAGGAGGTGAGTAGACGGG+TGG - Chr6:32182819-32182838 None:intergenic 65.0%
GGAGGTGAGTAGACGGGTGG+AGG - Chr6:32182816-32182835 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - Chr6:32182566-32182585 None:intergenic 65.0%
GGGAGGTGGTGAGTAGACGG+GGG - Chr6:32182617-32182636 None:intergenic 65.0%
GGGGAGGTGGTGAGTAGACG+GGG - Chr6:32182618-32182637 None:intergenic 65.0%
GGGGGAGGAGGTGAGTAGAC+GGG - Chr6:32182822-32182841 None:intergenic 65.0%
GGGGGAGGTGGTGAGTAGAC+GGG - Chr6:32182619-32182638 None:intergenic 65.0%
GGTGAGTAGACAGGTGGGGG+TGG - Chr6:32182386-32182405 None:intergenic 65.0%
GGTGAGTAGACGGGGGAGGT+GGG - Chr6:32182610-32182629 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - Chr6:32182560-32182579 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - Chr6:32182560-32182579 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - Chr6:32182563-32182582 None:intergenic 65.0%
GTGAGTAGACGGGGGAGGTG+GGG - Chr6:32182609-32182628 None:intergenic 65.0%
TGGTGAGTAGACGGGGGAGG+TGG - Chr6:32182611-32182630 None:intergenic 65.0%
! GGTGGTGGTGAGTAGACGGG+TGG - Chr6:32182667-32182686 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 32182215 32183059 32182215 ID=MsG0680032026.01;Name=MsG0680032026.01
Chr6 mRNA 32182215 32182986 32182215 ID=MsG0680032026.01.T01;Parent=MsG0680032026.01;Name=MsG0680032026.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|3|0|155
Chr6 exon 32182215 32182416 32182215 ID=MsG0680032026.01.T01:exon:15837;Parent=MsG0680032026.01.T01
Chr6 exon 32182620 32182742 32182620 ID=MsG0680032026.01.T01:exon:15838;Parent=MsG0680032026.01.T01
Chr6 exon 32182844 32182986 32182844 ID=MsG0680032026.01.T01:exon:15839;Parent=MsG0680032026.01.T01
Chr6 CDS 32182215 32182416 32182215 ID=MsG0680032026.01.T01:cds;Parent=MsG0680032026.01.T01
Chr6 CDS 32182620 32182742 32182620 ID=MsG0680032026.01.T01:cds;Parent=MsG0680032026.01.T01
Chr6 CDS 32182844 32182986 32182844 ID=MsG0680032026.01.T01:cds;Parent=MsG0680032026.01.T01
Chr6 mRNA 32182227 32183059 32182227 ID=MsG0680032026.01.T02;Parent=MsG0680032026.01;Name=MsG0680032026.01.T02;_AED=0.50;_eAED=0.55;_QI=0|0|0|1|0|0|2|0|261
Chr6 exon 32182227 32182425 32182227 ID=MsG0680032026.01.T02:exon:15840;Parent=MsG0680032026.01.T02
Chr6 exon 32182473 32183059 32182473 ID=MsG0680032026.01.T02:exon:15841;Parent=MsG0680032026.01.T02
Chr6 CDS 32182227 32182425 32182227 ID=MsG0680032026.01.T02:cds;Parent=MsG0680032026.01.T02
Chr6 CDS 32182473 32183059 32182473 ID=MsG0680032026.01.T02:cds;Parent=MsG0680032026.01.T02
Chr6 mRNA 32182333 32182986 32182333 ID=MsG0680032026.01.T03;Parent=MsG0680032026.01;Name=MsG0680032026.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|217
Chr6 exon 32182333 32182986 32182333 ID=MsG0680032026.01.T03:exon:15842;Parent=MsG0680032026.01.T03
Chr6 CDS 32182333 32182986 32182333 ID=MsG0680032026.01.T03:cds;Parent=MsG0680032026.01.T03
Chr6 mRNA 32182387 32182986 32182387 ID=MsG0680032026.01.T04;Parent=MsG0680032026.01;Name=MsG0680032026.01.T04;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|199
Chr6 exon 32182387 32182986 32182387 ID=MsG0680032026.01.T04:exon:15843;Parent=MsG0680032026.01.T04
Chr6 CDS 32182387 32182986 32182387 ID=MsG0680032026.01.T04:cds;Parent=MsG0680032026.01.T04
Gene Sequence

>MsG0680032026.01.T02

ATGGCCTCCATTACTCTTACTATTGCATTGACAATAATCTCTCTTAGCCTGCCATCCCAAATTTCAGCAAACAATTACGTCTATTCCTCTCCACACCACCATCTAAGCCATACAAATACGCTTCCCCACCACCACCCAGTTTACAAGTATAAATCACCACCCCCACCTGTCTACTCACCACCTCCACCTGTTTATAAATCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCACCAGTGTACTCACCACCACCACCAGTTTACAAGTACAAGTCCTCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCCCCGTCTACTCACCACCTCCCCCAGTTTACAAGTACAAGTCTCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCTGTCTACTCACCACCTCCACCGGTTTACAAGTACAAGTCCCCCCTCCACCCGTCTATTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCACCTCCTCCCCCAGTTTACAATTACAAGTCACCACCTCCTCCCGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTACTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCACTACTAAATGGTGGTTTATGATAGTATCCCAAGGTATACTTCTTCCTACGTACAACACACACAAAAAACATAATATTTAA

>MsG0680032026.01.T01

ATGAGGTTCCAAATGGCCTCCATTACTCTTACTATTGCATTGACAATAATCTCTCTTAGCCTGCCATCCCAAATTTCAGCAAACAATTACGTCTATTCCTCTCCACACCACCATCTAAGCCATACAAATACGCTTCCCCACCACCACCCAGTTTACAAGTATAAATCACCACCCCCACCTGTCTACTCACCACCTCCACCTGTCTACTCACCACCTCCCCCAGTTTACAAGTACAAGTCTCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCTGTCTACTCACCACCTCCACCGGTTTACAATTACAAGTCACCACCTCCTCCCGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTACTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCACTACTAA

>MsG0680032026.01.T04

CCCCACCTGTCTACTCACCACCTCCACCTGTTTATAAATATAAGTCACCACCTCCACCATCTACTCACCACCTCCACCTGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCACCAGTGTACTCACCACCACCACCAGTTTACAAGTACAAGTCCTCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCCCCGTCTACTCACCACCTCCCCCAGTTTACAAGTACAAGTCTCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCTGTCTACTCACCACCTCCACCGGTTTACAAGTACAAGTCCCCCCTCCACCCGTCTATTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCACCTCCTCCCCCAGTTTACAATTACAAGTCACCACCTCCTCCCGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTACTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCACTACTAA

>MsG0680032026.01.T03

GCCATACAAATACGCTTCCCCACCACCACCCAGTTTACAAGTATAAATCACCACCCCCACCTGTCTACTCACCACCTCCACCTGTTTATAAATATAAGTCACCACCTCCACCATCTACTCACCACCTCCACCTGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCACCAGTGTACTCACCACCACCACCAGTTTACAAGTACAAGTCCTCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCCCCGTCTACTCACCACCTCCCCCAGTTTACAAGTACAAGTCTCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCTGTCTACTCACCACCTCCACCGGTTTACAAGTACAAGTCCCCCCTCCACCCGTCTATTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCACCTCCTCCCCCAGTTTACAATTACAAGTCACCACCTCCTCCCGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTACTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCACTACTAA

Protein sequence

>MsG0680032026.01.T02

MASITLTIALTIISLSLPSQISANNYVYSSPHHHLSHTNTLPHHHPVYKYKSPPPPVYSPPPPVYKSPPPPVYKYKSPPPPVYSPPPPVYKYKSSSSTRLLTTSTSLQVQVPTSPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPLHPSIHHLHQFTNTSPHLHPSTHLLPQFTITSHHLLPSIHHLHQFTSISLLLLLLTHHLHHIISTLHHLLLTTTKWWFMIVSQGILLPTYNTHKKHNI*

>MsG0680032026.01.T01

MRFQMASITLTIALTIISLSLPSQISANNYVYSSPHHHLSHTNTLPHHHPVYKYKSPPPPVYSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYNYKSPPPPVYSPPPPVYKYKSPPPPTYSPPPPHYIYSSPPPPYHY*

>MsG0680032026.01.T04

PHLSTHHLHLFINISHHLHHLLTTSTCLLTTSTSLQVQVPTSTSVLTTTTSLQVQVLLLHPSTHHLHQFTSTSPHLPRLLTTSPSLQVQVSTSTRLLTTTTSLQVQVPSSTCLLTTSTGLQVQVPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYNYKSPPPPVYSPPPPVYKYKSPPPPTYSPPPPHYIYSSPPPPYHY*

>MsG0680032026.01.T03

AIQIRFPTTTQFTSINHHPHLSTHHLHLFINISHHLHHLLTTSTCLLTTSTSLQVQVPTSTSVLTTTTSLQVQVLLLHPSTHHLHQFTSTSPHLPRLLTTSPSLQVQVSTSTRLLTTTTSLQVQVPSSTCLLTTSTGLQVQVPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYNYKSPPPPVYSPPPPVYKYKSPPPPTYSPPPPHYIYSSPPPPYHY*