AlfalfaGEDB | MsG0280010290.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010290.01

KEGG: K24345
GO: GO:0005509
PFAM: PF13833

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010290.01.T01	XP_003596509.1	97.436	78	2	0	1	78	33	110	2.04E-46	154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010290.01.T01	Q9LSQ6	57.746	71	28	2	1	69	47	117	3.12E-19	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010290.01.T01	Q2HVQ3	97.436	78	2	0	1	78	33	110	9.73e-47	154

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006592.01	MsG0280010290.01	0.817314	3.516859e-52	2.552396e-49
MsG0280007955.01	MsG0280010290.01	0.802291	6.015962e-49	2.935969e-46
MsG0280010284.01	MsG0280010290.01	0.806048	9.940701e-50	5.342203e-47
MsG0280010290.01	MsG0280010788.01	0.810447	1.147590e-50	6.919054e-48
MsG0280010290.01	MsG0280011329.01	0.806464	8.124537e-50	4.412763e-47
MsG0280010290.01	MsG0380014221.01	0.816803	4.581152e-52	3.278602e-49
MsG0280010290.01	MsG0480021056.01	0.808760	2.643118e-50	1.524005e-47
MsG0280010290.01	MsG0480022054.01	0.810783	9.709076e-51	5.906733e-48
MsG0280010290.01	MsG0580025053.01	0.816397	5.647476e-52	3.997228e-49
MsG0280010290.01	MsG0580028407.01	0.801262	9.784885e-49	4.652198e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010290.01.T01	MTR_2g081300	97.436	78	2	0	1	78	33	110	2.47e-50	154
MsG0280010290.01.T01	MTR_2g081350	93.590	78	5	0	1	78	37	114	2.02e-48	149
MsG0280010290.01.T01	MTR_2g081440	87.179	78	10	0	1	78	37	114	5.79e-45	140
MsG0280010290.01.T01	MTR_8g466250	73.134	67	17	1	2	67	40	106	5.30e-27	95.1
MsG0280010290.01.T01	MTR_2g081580	67.647	68	21	1	1	67	38	105	3.51e-25	90.5
MsG0280010290.01.T01	MTR_2g011400	65.152	66	22	1	1	65	42	107	5.09e-22	82.4
MsG0280010290.01.T01	MTR_2g089210	61.905	63	23	1	1	62	38	100	1.15e-20	79.0
MsG0280010290.01.T01	MTR_1g052885	61.905	63	23	1	1	62	34	96	2.26e-19	75.5
MsG0280010290.01.T01	MTR_8g027180	56.452	62	26	1	2	62	48	109	3.73e-16	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010290.01.T01	AT5G54490	57.746	71	28	2	1	69	47	117	3.18e-20	78.2
MsG0280010290.01.T01	AT4G27280	57.746	71	28	2	1	69	47	117	3.92e-18	73.2
MsG0280010290.01.T01	AT2G46600	56.452	62	26	1	2	62	51	112	6.30e-16	67.4

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Find 19 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTATGCACAACTCGTCA+AGG	0.609447	2:-67347422	MsG0280010290.01.T01:CDS
AAGATGAATTGTTTCATGCT+TGG	0.428476	2:-67347575	MsG0280010290.01.T01:CDS
AGAGCTCGTGTACATGCTAA+TGG	0.465464	2:-67347534	MsG0280010290.01.T01:CDS
AGATGGTGCTTTAAATCAAA+TGG	0.452147	2:-67347495	MsG0280010290.01.T01:CDS
ATGCACAACTCGTCAAGGCG+CGG	0.603525	2:-67347417	MsG0280010290.01.T01:CDS
CATGCTAATGGAAGGTGATT+TGG	0.335601	2:-67347522	MsG0280010290.01.T01:CDS
CATGCTTGGCTTGGAGGTGA+GGG	0.472194	2:-67347561	MsG0280010290.01.T01:CDS
CTAATGGAAGGTGATTTGGA+TGG	0.674005	2:-67347518	MsG0280010290.01.T01:CDS
CTCGTGTACATGCTAATGGA+AGG	0.614676	2:-67347530	MsG0280010290.01.T01:CDS
GAAGGTGATTTGGATGGAGA+TGG	0.627275	2:-67347512	MsG0280010290.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGAATTGTTTCATGCT+TGG	-	Chr2:67347439-67347458	MsG0280010290.01.T01:CDS	30.0%
AAATTATGCACAACTCGTCA+AGG	-	Chr2:67347592-67347611	MsG0280010290.01.T01:CDS	35.0%
TGACGAGTTGTGCATAATTT+AGG	+	Chr2:67347592-67347611	None:intergenic	35.0%
TTAGGTCCATCCATTAAACA+TGG	+	Chr2:67347574-67347593	None:intergenic	35.0%
TTGAGTCCATGTTTAATGGA+TGG	-	Chr2:67347565-67347584	MsG0280010290.01.T01:CDS	35.0%
CATGCTAATGGAAGGTGATT+TGG	-	Chr2:67347492-67347511	MsG0280010290.01.T01:CDS	40.0%
GAATTGTTTCATGCTTGGCT+TGG	-	Chr2:67347444-67347463	MsG0280010290.01.T01:CDS	40.0%
AGAGCTCGTGTACATGCTAA+TGG	-	Chr2:67347480-67347499	MsG0280010290.01.T01:CDS	45.0%
CTCGTGTACATGCTAATGGA+AGG	-	Chr2:67347484-67347503	MsG0280010290.01.T01:CDS	45.0%
ATGCACAACTCGTCAAGGCG+CGG	-	Chr2:67347597-67347616	MsG0280010290.01.T01:CDS	55.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	67347400	67347636	67347400	ID=MsG0280010290.01;Name=MsG0280010290.01
Chr2	mRNA	67347400	67347636	67347400	ID=MsG0280010290.01.T01;Parent=MsG0280010290.01;Name=MsG0280010290.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|78
Chr2	exon	67347400	67347636	67347400	ID=MsG0280010290.01.T01:exon:5640;Parent=MsG0280010290.01.T01
Chr2	CDS	67347400	67347636	67347400	ID=MsG0280010290.01.T01:cds;Parent=MsG0280010290.01.T01

Gene Sequence	>MsG0280010290.01.T01 ATGGATGTGAACAAAGGTCTTATAACATTTGAGAGCTTGAAGATGAATTGTTTCATGCTTGGCTTGGAGGTGAGGGATGAAGAGCTCGTGTACATGCTAATGGAAGGTGATTTGGATGGAGATGGTGCTTTAAATCAAATGGAGTTTTGCATTCTCATGTTTAGGTTGAGTCCATGTTTAATGGATGGACCTAAATTATGCACAACTCGTCAAGGCGCGGATCCAATGTTAATGTAA
Protein sequence	>MsG0280010290.01.T01 MDVNKGLITFESLKMNCFMLGLEVRDEELVYMLMEGDLDGDGALNQMEFCILMFRLSPCLMDGPKLCTTRQGADPMLM*