Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046421.01.T01 | XP_003609006.1 | 86.813 | 273 | 7 | 1 | 1 | 273 | 1 | 244 | 4.45E-169 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046421.01.T01 | P42056 | 36.972 | 284 | 160 | 5 | 1 | 273 | 1 | 276 | 1.74E-52 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046421.01.T01 | G7JPX4 | 86.813 | 273 | 7 | 1 | 1 | 273 | 1 | 244 | 2.13e-169 | 477 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048660.01 | MsG0880046421.01 | 0.803044 | 4.206863e-49 | 2.092684e-46 |
| MsG0880045162.01 | MsG0880046421.01 | 0.802125 | 6.507355e-49 | 3.162242e-46 |
| MsG0880045735.01 | MsG0880046421.01 | 0.837257 | 5.782355e-57 | 7.468805e-54 |
| MsG0780040430.01 | MsG0880046421.01 | 0.803716 | 3.052867e-49 | 1.545082e-46 |
| MsG0880041897.01 | MsG0880046421.01 | 0.847404 | 1.181667e-59 | 2.098047e-56 |
| MsG0380014221.01 | MsG0880046421.01 | 0.848184 | 7.205942e-60 | 1.311417e-56 |
| MsG0680031263.01 | MsG0880046421.01 | 0.849077 | 4.074116e-60 | 7.634391e-57 |
| MsG0680031264.01 | MsG0880046421.01 | 0.857693 | 1.371324e-62 | 3.413873e-59 |
| MsG0680031621.01 | MsG0880046421.01 | 0.860360 | 2.181258e-63 | 5.946622e-60 |
| MsG0680031702.01 | MsG0880046421.01 | 0.833212 | 6.070741e-56 | 6.944423e-53 |
| MsG0480023138.01 | MsG0880046421.01 | 0.870137 | 1.831015e-66 | 7.045240e-63 |
| MsG0580024952.01 | MsG0880046421.01 | 0.851368 | 9.290422e-61 | 1.876430e-57 |
| MsG0580025053.01 | MsG0880046421.01 | 0.871036 | 9.276717e-67 | 3.687641e-63 |
| MsG0380017893.01 | MsG0880046421.01 | 0.852685 | 3.924895e-61 | 8.267029e-58 |
| MsG0580028407.01 | MsG0880046421.01 | 0.854567 | 1.129751e-61 | 2.533826e-58 |
| MsG0280006592.01 | MsG0880046421.01 | 0.821328 | 4.279456e-53 | 3.471096e-50 |
| MsG0280008899.01 | MsG0880046421.01 | 0.815961 | 7.067629e-52 | 4.943102e-49 |
| MsG0280010290.01 | MsG0880046421.01 | 0.801779 | 7.664553e-49 | 3.691939e-46 |
| MsG0780039940.01 | MsG0880046421.01 | 0.884354 | 2.059301e-71 | 1.354250e-67 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046421.01.T01 | MTR_4g107840 | 86.813 | 273 | 7 | 1 | 1 | 273 | 1 | 244 | 5.39e-173 | 477 |
| MsG0880046421.01.T01 | MTR_7g009330 | 37.234 | 282 | 160 | 4 | 2 | 273 | 3 | 277 | 4.97e-53 | 174 |
| MsG0880046421.01.T01 | MTR_8g469150 | 36.364 | 286 | 159 | 6 | 1 | 273 | 1 | 276 | 6.61e-52 | 171 |
| MsG0880046421.01.T01 | MTR_6g011390 | 35.439 | 285 | 165 | 4 | 1 | 273 | 1 | 278 | 2.07e-51 | 170 |
| MsG0880046421.01.T01 | MTR_8g469150 | 35.926 | 270 | 151 | 5 | 1 | 257 | 1 | 261 | 1.50e-48 | 162 |
| MsG0880046421.01.T01 | MTR_5g015580 | 28.269 | 283 | 186 | 4 | 1 | 273 | 1 | 276 | 1.65e-32 | 120 |
| MsG0880046421.01.T01 | MTR_1g018205 | 25.177 | 282 | 194 | 6 | 2 | 273 | 3 | 277 | 2.09e-27 | 107 |
| MsG0880046421.01.T01 | MTR_4g128300 | 25.773 | 291 | 186 | 6 | 1 | 273 | 1 | 279 | 3.71e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046421.01.T01 | AT3G01280 | 37.193 | 285 | 158 | 7 | 1 | 273 | 1 | 276 | 5.17e-53 | 174 |
| MsG0880046421.01.T01 | AT5G15090 | 32.862 | 283 | 171 | 5 | 1 | 273 | 1 | 274 | 2.68e-43 | 149 |
| MsG0880046421.01.T01 | AT5G15090 | 32.862 | 283 | 171 | 5 | 1 | 273 | 1 | 274 | 2.68e-43 | 149 |
| MsG0880046421.01.T01 | AT5G67500 | 29.682 | 283 | 182 | 6 | 1 | 273 | 1 | 276 | 4.64e-33 | 122 |
| MsG0880046421.01.T01 | AT5G67500 | 27.097 | 310 | 182 | 7 | 1 | 273 | 1 | 303 | 1.29e-31 | 119 |
| MsG0880046421.01.T01 | AT5G57490 | 29.412 | 289 | 173 | 9 | 1 | 273 | 1 | 274 | 1.62e-31 | 118 |
| MsG0880046421.01.T01 | AT5G67500 | 26.950 | 282 | 173 | 6 | 1 | 264 | 1 | 267 | 2.81e-28 | 110 |
| MsG0880046421.01.T01 | AT3G49920 | 34.127 | 126 | 82 | 1 | 148 | 273 | 102 | 226 | 2.91e-15 | 73.6 |
Find 73 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCCGGCGAAATGGATTT+TGG | 0.152016 | 8:-73228131 | MsG0880046421.01.T01:CDS |
| ACTGGATGCATTGGATTATT+AGG | 0.191506 | 8:-73228721 | MsG0880046421.01.T01:CDS |
| CTCTCATTCAACAAGGATTT+TGG | 0.192793 | 8:-73228172 | MsG0880046421.01.T01:CDS |
| CGAGCCTTTAGCAATGTTTC+AGG | 0.209136 | 8:+73228221 | None:intergenic |
| TTGCAATGGCCGTCTGGGTT+AGG | 0.244222 | 8:+73228312 | None:intergenic |
| AATAGATTCACTGGGATTAC+TGG | 0.244615 | 8:-73228739 | MsG0880046421.01.T01:CDS |
| CTTGTGTTGCAATGGCCGTC+TGG | 0.310688 | 8:+73228306 | None:intergenic |
| TGCAATGGCCGTCTGGGTTA+GGG | 0.312768 | 8:+73228313 | None:intergenic |
| TCACTTTCACTACCAATTCA+TGG | 0.317926 | 8:-73229693 | MsG0880046421.01.T01:CDS |
| AAGAAATTCTACCTGGATTC+AGG | 0.317980 | 8:-73228929 | MsG0880046421.01.T01:CDS |
| GACCCTGTTGTAAAATTATC+AGG | 0.320742 | 8:-73228679 | MsG0880046421.01.T01:CDS |
| ACAGAATGCTTGTTCCTAAA+AGG | 0.329840 | 8:+73228656 | None:intergenic |
| GGGGTTTACTTCATGATAAA+TGG | 0.338544 | 8:+73228334 | None:intergenic |
| TAGAATTTCTTGAACTGTAA+TGG | 0.369739 | 8:+73228941 | None:intergenic |
| ATATCAACTTAGCTTATGTT+TGG | 0.370389 | 8:-73229634 | MsG0880046421.01.T01:CDS |
| AAAGGCTCGCTTTGACAGTT+CGG | 0.382952 | 8:-73228207 | MsG0880046421.01.T01:CDS |
| CTGCATTCCAATCCATGAAT+TGG | 0.405723 | 8:+73229681 | None:intergenic |
| TGTAACTATGGCCGGCGAAA+TGG | 0.408333 | 8:-73228138 | MsG0880046421.01.T01:CDS |
| AAGGCTCGCTTTGACAGTTC+GGG | 0.409065 | 8:-73228206 | MsG0880046421.01.T01:CDS |
| TTCACTACCAATTCATGGAT+TGG | 0.415231 | 8:-73229688 | MsG0880046421.01.T01:CDS |
| AATGGTACCTTCCCGGAGTC+TGG | 0.421783 | 8:+73228885 | None:intergenic |
| ACCAAGTTGACTGCTGGCTT+CGG | 0.424833 | 8:-73228589 | MsG0880046421.01.T01:CDS |
| GCAAGGCAACATTGGCTCCT+AGG | 0.425523 | 8:+73228632 | None:intergenic |
| CCTGGTGTATATTCTAATCT+TGG | 0.430429 | 8:-73229869 | MsG0880046421.01.T01:CDS |
| CAATTCATGGATTGGAATGC+AGG | 0.439436 | 8:-73229680 | MsG0880046421.01.T01:CDS |
| ACAAAGTAATGGTACCTTCC+CGG | 0.441553 | 8:+73228878 | None:intergenic |
| ATATTCTAATCTTGGCGATA+AGG | 0.441721 | 8:-73229861 | MsG0880046421.01.T01:CDS |
| AGCTTGTCACTCAAGGAAAC+TGG | 0.442221 | 8:-73228275 | MsG0880046421.01.T01:CDS |
| ACTGGGATTACTGGATGCAT+TGG | 0.448328 | 8:-73228730 | MsG0880046421.01.T01:CDS |
| CAGGGTCATATGCTCCATCT+TGG | 0.460843 | 8:+73228695 | None:intergenic |
| ACAAGGTCAATGAAGCTTCA+AGG | 0.465289 | 8:+73228551 | None:intergenic |
| GCCATGGAGACTCCAACCTT+TGG | 0.474824 | 8:+73228089 | None:intergenic |
| CAGTACTTGAATAGATTCAC+TGG | 0.475573 | 8:-73228748 | MsG0880046421.01.T01:CDS |
| AACTTGGTTATCGATCTTGT+TGG | 0.497298 | 8:+73228604 | None:intergenic |
| TTTGACAGTTCGGGCAAAGT+AGG | 0.498953 | 8:-73228197 | MsG0880046421.01.T01:CDS |
| AGCAAAATGAGCAAGAGTCC+TGG | 0.500833 | 8:-73229887 | None:intergenic |
| GCAATGGCCGTCTGGGTTAG+GGG | 0.501382 | 8:+73228314 | None:intergenic |
| CAAGGCAACATTGGCTCCTA+GGG | 0.505987 | 8:+73228633 | None:intergenic |
| TTTATTAGATTGTCTTTACA+AGG | 0.506198 | 8:-73229738 | MsG0880046421.01.T01:intron |
| GCCGAAGCCAGCAGTCAACT+TGG | 0.507792 | 8:+73228588 | None:intergenic |
| AATTGGTAGTGAAAGTGAAT+AGG | 0.508379 | 8:+73229698 | None:intergenic |
| TTGTGTTGCAATGGCCGTCT+GGG | 0.533482 | 8:+73228307 | None:intergenic |
| GGAACAAGCATTCTGTCCCT+AGG | 0.535981 | 8:-73228649 | MsG0880046421.01.T01:CDS |
| AAGGAAACTGGTGTCACCAT+TGG | 0.538400 | 8:-73228263 | MsG0880046421.01.T01:CDS |
| AATGCAGGCTTCTCTTGTAA+AGG | 0.539074 | 8:-73229665 | MsG0880046421.01.T01:CDS |
| AAATGTACCGTACCAGACTC+CGG | 0.544121 | 8:-73228897 | MsG0880046421.01.T01:CDS |
| CAATGGCCGTCTGGGTTAGG+GGG | 0.545151 | 8:+73228315 | None:intergenic |
| TTGAAAACAGTCCTGAATCC+AGG | 0.545165 | 8:+73228918 | None:intergenic |
| ACAGTTCAAGAAATTCTACC+TGG | 0.548340 | 8:-73228936 | MsG0880046421.01.T01:CDS |
| TCGATAACCAAGTTGACTGC+TGG | 0.549363 | 8:-73228595 | MsG0880046421.01.T01:CDS |
| ATGTTTGGAACTGCGGTGAT+CGG | 0.557233 | 8:-73229619 | MsG0880046421.01.T01:intron |
| GGCCCCAAAATCCATTTCGC+CGG | 0.561250 | 8:+73228127 | None:intergenic |
| CGATCTTGTTGGTATGTGCA+AGG | 0.562305 | 8:+73228615 | None:intergenic |
| AACCTTTGGAATCTTATCAT+CGG | 0.566666 | 8:+73228103 | None:intergenic |
| AAATGCATGCTGAGCACCAA+TGG | 0.571123 | 8:+73228247 | None:intergenic |
| GGATTATTAGGAAACCAAGA+TGG | 0.572580 | 8:-73228709 | MsG0880046421.01.T01:CDS |
| TTAGCTTATGTTTGGAACTG+CGG | 0.576350 | 8:-73229626 | MsG0880046421.01.T01:CDS |
| TCCAAAGGTTGGAGTCTCCA+TGG | 0.577690 | 8:-73228090 | MsG0880046421.01.T01:CDS |
| ATGCTTCACTTGTGTTGCAA+TGG | 0.577920 | 8:+73228298 | None:intergenic |
| GATGATAAGATTCCAAAGGT+TGG | 0.579129 | 8:-73228101 | MsG0880046421.01.T01:CDS |
| AATCTTGGCGATAAGGCCAA+AGG | 0.579547 | 8:-73229854 | MsG0880046421.01.T01:intron |
| AGATTAGGGTCTTAGAGCCA+TGG | 0.589733 | 8:+73228073 | None:intergenic |
| AATGTACCGTACCAGACTCC+GGG | 0.592748 | 8:-73228896 | MsG0880046421.01.T01:CDS |
| CTTTGGAATCTTATCATCGG+TGG | 0.598433 | 8:+73228106 | None:intergenic |
| GAAGCATAGCTTGTCACTCA+AGG | 0.598774 | 8:-73228282 | MsG0880046421.01.T01:CDS |
| TACCTTCCCGGAGTCTGGTA+CGG | 0.603084 | 8:+73228890 | None:intergenic |
| GGTCAATGAAGCTTCAAGGA+AGG | 0.612698 | 8:+73228555 | None:intergenic |
| AGTACTTGAATAGATTCACT+GGG | 0.614520 | 8:-73228747 | MsG0880046421.01.T01:CDS |
| TGGTATGTGCAAGGCAACAT+TGG | 0.624437 | 8:+73228624 | None:intergenic |
| CCAAGATTAGAATATACACC+AGG | 0.632111 | 8:+73229869 | None:intergenic |
| CACCGATGATAAGATTCCAA+AGG | 0.660499 | 8:-73228105 | MsG0880046421.01.T01:CDS |
| TACCGTACCAGACTCCGGGA+AGG | 0.677553 | 8:-73228892 | MsG0880046421.01.T01:intron |
| GTAGGTGCTCTCATTCAACA+AGG | 0.711960 | 8:-73228179 | MsG0880046421.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCACATTATTTAAATCA+AGG | - | Chr8:73228654-73228673 | MsG0880046421.01.T01:CDS | 15.0% |
| !! | TATCACATTATTTAAATCAA+GGG | - | Chr8:73228655-73228674 | MsG0880046421.01.T01:CDS | 15.0% |
| !! | TTAAATATTTCATATTATGC+AGG | - | Chr8:73229572-73229591 | MsG0880046421.01.T01:intron | 15.0% |
| !!! | ATTTTTCTGATAAATTTAGT+CGG | + | Chr8:73229454-73229473 | None:intergenic | 15.0% |
| !!! | TACTTTTATTTTTCTACTTA+TGG | - | Chr8:73228426-73228445 | MsG0880046421.01.T01:intron | 15.0% |
| !!! | TTTCTATACATATTTCTAAA+CGG | + | Chr8:73228880-73228899 | None:intergenic | 15.0% |
| !! | AATTTATCAGAAAAATGGAT+AGG | - | Chr8:73229458-73229477 | MsG0880046421.01.T01:intron | 20.0% |
| !! | GACTAAATTTATCAGAAAAA+TGG | - | Chr8:73229453-73229472 | MsG0880046421.01.T01:intron | 20.0% |
| !! | TGATACTATACATAGTATAT+AGG | + | Chr8:73229110-73229129 | None:intergenic | 20.0% |
| !! | TTTATTAGATTGTCTTTACA+AGG | - | Chr8:73228219-73228238 | MsG0880046421.01.T01:CDS | 20.0% |
| ! | AAAGATAGAAAATGGAATGA+TGG | + | Chr8:73228600-73228619 | None:intergenic | 25.0% |
| ! | AAGATAGAAAATGGAATGAT+GGG | + | Chr8:73228599-73228618 | None:intergenic | 25.0% |
| ! | AGACTACAAAAGATAGAAAA+TGG | + | Chr8:73228608-73228627 | None:intergenic | 25.0% |
| ! | ATATCAACTTAGCTTATGTT+TGG | - | Chr8:73228323-73228342 | MsG0880046421.01.T01:CDS | 25.0% |
| ! | ATGGAATTTGATAAAACCTT+TGG | + | Chr8:73228122-73228141 | None:intergenic | 25.0% |
| ! | ATTTCAGTATAATACTAGCA+AGG | + | Chr8:73228185-73228204 | None:intergenic | 25.0% |
| ! | CAATCTTCATTTCATATGAT+TGG | - | Chr8:73228789-73228808 | MsG0880046421.01.T01:intron | 25.0% |
| ! | GAGAAAGTTTGAAAAATTTG+AGG | + | Chr8:73228577-73228596 | None:intergenic | 25.0% |
| ! | TAGAATTTCTTGAACTGTAA+TGG | + | Chr8:73229019-73229038 | None:intergenic | 25.0% |
| ! | TATAGGTAAGTACAAAGTAA+TGG | + | Chr8:73229093-73229112 | None:intergenic | 25.0% |
| ! | TATGAATTCATTGTGATTTG+AGG | + | Chr8:73229179-73229198 | None:intergenic | 25.0% |
| ! | TCAAATCACAATGAATTCAT+AGG | - | Chr8:73229178-73229197 | MsG0880046421.01.T01:intron | 25.0% |
| !! | AGGGTTCTAATAAATTAACA+TGG | + | Chr8:73228941-73228960 | None:intergenic | 25.0% |
| !! | CATTGAATGGTATTTTGTTA+TGG | + | Chr8:73228714-73228733 | None:intergenic | 25.0% |
| !! | TTCTAAAGATTCAAATGGAA+TGG | + | Chr8:73228141-73228160 | None:intergenic | 25.0% |
| !!! | TATGATGGATATATCTTACA+AGG | + | Chr8:73229426-73229445 | None:intergenic | 25.0% |
| AATCACAATGAATTCATAGG+TGG | - | Chr8:73229181-73229200 | MsG0880046421.01.T01:intron | 30.0% | |
| ACTTCCAACAGAATAACATT+TGG | + | Chr8:73228479-73228498 | None:intergenic | 30.0% | |
| AGTACTTGAATAGATTCACT+GGG | - | Chr8:73229210-73229229 | MsG0880046421.01.T01:intron | 30.0% | |
| ATATTCTAATCTTGGCGATA+AGG | - | Chr8:73228096-73228115 | MsG0880046421.01.T01:CDS | 30.0% | |
| ATGTATGTGAAGTCATTGAA+TGG | + | Chr8:73228727-73228746 | None:intergenic | 30.0% | |
| ATGTTATTCTGTTGGAAGTA+TGG | - | Chr8:73228480-73228499 | MsG0880046421.01.T01:intron | 30.0% | |
| ATTTAGTCGGTAGTTTATGA+TGG | + | Chr8:73229441-73229460 | None:intergenic | 30.0% | |
| CACATTATTTAAATCAAGGG+TGG | - | Chr8:73228658-73228677 | MsG0880046421.01.T01:CDS | 30.0% | |
| TAAAAGATTAAGCCTCTGTT+TGG | + | Chr8:73228408-73228427 | None:intergenic | 30.0% | |
| TATTAGAACCCTGAATGAAA+TGG | - | Chr8:73228949-73228968 | MsG0880046421.01.T01:CDS | 30.0% | |
| TTAGCCAAATGTTATTCTGT+TGG | - | Chr8:73228472-73228491 | MsG0880046421.01.T01:intron | 30.0% | |
| ! | CACTCTTCTAAAGATTCAAA+TGG | + | Chr8:73228146-73228165 | None:intergenic | 30.0% |
| ! | GTAAAATTATCAGGCCTTTT+AGG | - | Chr8:73229287-73229306 | MsG0880046421.01.T01:intron | 30.0% |
| ! | TTTTCCTGAAACATTGCTAA+AGG | - | Chr8:73229732-73229751 | MsG0880046421.01.T01:CDS | 30.0% |
| !! | AACCTTTGGAATCTTATCAT+CGG | + | Chr8:73229857-73229876 | None:intergenic | 30.0% |
| !! | AATTGGTAGTGAAAGTGAAT+AGG | + | Chr8:73228262-73228281 | None:intergenic | 30.0% |
| !!! | AGATTTTTTGTAACTATGGC+CGG | - | Chr8:73229811-73229830 | MsG0880046421.01.T01:intron | 30.0% |
| !!! | GCAGAGATTTTTTGTAACTA+TGG | - | Chr8:73229807-73229826 | MsG0880046421.01.T01:intron | 30.0% |
| AACTTGGTTATCGATCTTGT+TGG | + | Chr8:73229356-73229375 | None:intergenic | 35.0% | |
| AAGAAATTCTACCTGGATTC+AGG | - | Chr8:73229028-73229047 | MsG0880046421.01.T01:intron | 35.0% | |
| AATAGATTCACTGGGATTAC+TGG | - | Chr8:73229218-73229237 | MsG0880046421.01.T01:intron | 35.0% | |
| ACAGAATGCTTGTTCCTAAA+AGG | + | Chr8:73229304-73229323 | None:intergenic | 35.0% | |
| ACAGTTCAAGAAATTCTACC+TGG | - | Chr8:73229021-73229040 | MsG0880046421.01.T01:intron | 35.0% | |
| ACTGGATGCATTGGATTATT+AGG | - | Chr8:73229236-73229255 | MsG0880046421.01.T01:intron | 35.0% | |
| CAGTACTTGAATAGATTCAC+TGG | - | Chr8:73229209-73229228 | MsG0880046421.01.T01:intron | 35.0% | |
| CCAAGATTAGAATATACACC+AGG | + | Chr8:73228091-73228110 | None:intergenic | 35.0% | |
| CCTGGTGTATATTCTAATCT+TGG | - | Chr8:73228088-73228107 | MsG0880046421.01.T01:CDS | 35.0% | |
| GACCCTGTTGTAAAATTATC+AGG | - | Chr8:73229278-73229297 | MsG0880046421.01.T01:intron | 35.0% | |
| GATGATAAGATTCCAAAGGT+TGG | - | Chr8:73229856-73229875 | MsG0880046421.01.T01:CDS | 35.0% | |
| GGATTATTAGGAAACCAAGA+TGG | - | Chr8:73229248-73229267 | MsG0880046421.01.T01:intron | 35.0% | |
| GGGGTTTACTTCATGATAAA+TGG | + | Chr8:73229626-73229645 | None:intergenic | 35.0% | |
| TCACTTTCACTACCAATTCA+TGG | - | Chr8:73228264-73228283 | MsG0880046421.01.T01:CDS | 35.0% | |
| TGGCATCTAAATTTGCACTT+AGG | - | Chr8:73228809-73228828 | MsG0880046421.01.T01:intron | 35.0% | |
| TTCACTACCAATTCATGGAT+TGG | - | Chr8:73228269-73228288 | MsG0880046421.01.T01:CDS | 35.0% | |
| TTTAGACTGCAAGAATGAGA+AGG | - | Chr8:73228371-73228390 | MsG0880046421.01.T01:intron | 35.0% | |
| ! | AGGCCTGATAATTTTACAAC+AGG | + | Chr8:73229284-73229303 | None:intergenic | 35.0% |
| ! | AGGTAATGCCATTTCATTCA+GGG | + | Chr8:73228960-73228979 | None:intergenic | 35.0% |
| ! | CTCTCATTCAACAAGGATTT+TGG | - | Chr8:73229785-73229804 | MsG0880046421.01.T01:intron | 35.0% |
| ! | GGCCTGATAATTTTACAACA+GGG | + | Chr8:73229283-73229302 | None:intergenic | 35.0% |
| ! | TTAGCTTATGTTTGGAACTG+CGG | - | Chr8:73228331-73228350 | MsG0880046421.01.T01:CDS | 35.0% |
| AATGCAGGCTTCTCTTGTAA+AGG | - | Chr8:73228292-73228311 | MsG0880046421.01.T01:CDS | 40.0% | |
| ACAAAGTAATGGTACCTTCC+CGG | + | Chr8:73229082-73229101 | None:intergenic | 40.0% | |
| ACAAGGTCAATGAAGCTTCA+AGG | + | Chr8:73229409-73229428 | None:intergenic | 40.0% | |
| ACATGGCTCTCATTTGTTTG+TGG | + | Chr8:73228924-73228943 | None:intergenic | 40.0% | |
| AGAAACAGTTTAGCCCTCAA+AGG | - | Chr8:73228895-73228914 | MsG0880046421.01.T01:CDS | 40.0% | |
| ATGCTTCACTTGTGTTGCAA+TGG | + | Chr8:73229662-73229681 | None:intergenic | 40.0% | |
| CACCGATGATAAGATTCCAA+AGG | - | Chr8:73229852-73229871 | MsG0880046421.01.T01:intron | 40.0% | |
| CTGCATTCCAATCCATGAAT+TGG | + | Chr8:73228279-73228298 | None:intergenic | 40.0% | |
| TTGAAAACAGTCCTGAATCC+AGG | + | Chr8:73229042-73229061 | None:intergenic | 40.0% | |
| TTGTTTGTGGAGACCTTTGA+GGG | + | Chr8:73228911-73228930 | None:intergenic | 40.0% | |
| TTTGTTTGTGGAGACCTTTG+AGG | + | Chr8:73228912-73228931 | None:intergenic | 40.0% | |
| ! | CAGGTAATGCCATTTCATTC+AGG | + | Chr8:73228961-73228980 | None:intergenic | 40.0% |
| !! | CAATTCATGGATTGGAATGC+AGG | - | Chr8:73228277-73228296 | MsG0880046421.01.T01:CDS | 40.0% |
| !! | CTTTGGAATCTTATCATCGG+TGG | + | Chr8:73229854-73229873 | None:intergenic | 40.0% |
| AAAGGCTCGCTTTGACAGTT+CGG | - | Chr8:73229750-73229769 | MsG0880046421.01.T01:intron | 45.0% | |
| AAATGCATGCTGAGCACCAA+TGG | + | Chr8:73229713-73229732 | None:intergenic | 45.0% | |
| AAATGTACCGTACCAGACTC+CGG | - | Chr8:73229060-73229079 | MsG0880046421.01.T01:intron | 45.0% | |
| AATCTTGGCGATAAGGCCAA+AGG | - | Chr8:73228103-73228122 | MsG0880046421.01.T01:CDS | 45.0% | |
| ACTGGGATTACTGGATGCAT+TGG | - | Chr8:73229227-73229246 | MsG0880046421.01.T01:intron | 45.0% | |
| AGCTTGTCACTCAAGGAAAC+TGG | - | Chr8:73229682-73229701 | MsG0880046421.01.T01:CDS | 45.0% | |
| CGAGCCTTTAGCAATGTTTC+AGG | + | Chr8:73229739-73229758 | None:intergenic | 45.0% | |
| CGATCTTGTTGGTATGTGCA+AGG | + | Chr8:73229345-73229364 | None:intergenic | 45.0% | |
| GGTCAATGAAGCTTCAAGGA+AGG | + | Chr8:73229405-73229424 | None:intergenic | 45.0% | |
| GTAGGTGCTCTCATTCAACA+AGG | - | Chr8:73229778-73229797 | MsG0880046421.01.T01:intron | 45.0% | |
| TGGTATGTGCAAGGCAACAT+TGG | + | Chr8:73229336-73229355 | None:intergenic | 45.0% | |
| TTTGACAGTTCGGGCAAAGT+AGG | - | Chr8:73229760-73229779 | MsG0880046421.01.T01:intron | 45.0% | |
| ! | ATGTTTGGAACTGCGGTGAT+CGG | - | Chr8:73228338-73228357 | MsG0880046421.01.T01:CDS | 45.0% |
| ! | GAAGCATAGCTTGTCACTCA+AGG | - | Chr8:73229675-73229694 | MsG0880046421.01.T01:CDS | 45.0% |
| ! | TCGATAACCAAGTTGACTGC+TGG | - | Chr8:73229362-73229381 | MsG0880046421.01.T01:intron | 45.0% |
| !! | AAGGAAACTGGTGTCACCAT+TGG | - | Chr8:73229694-73229713 | MsG0880046421.01.T01:CDS | 45.0% |
| AAGGCTCGCTTTGACAGTTC+GGG | - | Chr8:73229751-73229770 | MsG0880046421.01.T01:intron | 50.0% | |
| AATGTACCGTACCAGACTCC+GGG | - | Chr8:73229061-73229080 | MsG0880046421.01.T01:intron | 50.0% | |
| ACTACAGTCAGACATGCTGC+AGG | + | Chr8:73228980-73228999 | None:intergenic | 50.0% | |
| AGTAAACCCCCTAACCCAGA+CGG | - | Chr8:73229636-73229655 | MsG0880046421.01.T01:CDS | 50.0% | |
| CAAGAATGAGAAGGCTACCG+CGG | - | Chr8:73228380-73228399 | MsG0880046421.01.T01:intron | 50.0% | |
| CAGGGTCATATGCTCCATCT+TGG | + | Chr8:73229265-73229284 | None:intergenic | 50.0% | |
| GGAACAAGCATTCTGTCCCT+AGG | - | Chr8:73229308-73229327 | MsG0880046421.01.T01:intron | 50.0% | |
| TAAGCCTCTGTTTGGATCCG+CGG | + | Chr8:73228400-73228419 | None:intergenic | 50.0% | |
| TCCAAAGGTTGGAGTCTCCA+TGG | - | Chr8:73229867-73229886 | MsG0880046421.01.T01:CDS | 50.0% | |
| TGTAACTATGGCCGGCGAAA+TGG | - | Chr8:73229819-73229838 | MsG0880046421.01.T01:intron | 50.0% | |
| TTGTGTTGCAATGGCCGTCT+GGG | + | Chr8:73229653-73229672 | None:intergenic | 50.0% | |
| !! | ACCAAGTTGACTGCTGGCTT+CGG | - | Chr8:73229368-73229387 | MsG0880046421.01.T01:intron | 50.0% |
| !! | ATGGCCGGCGAAATGGATTT+TGG | - | Chr8:73229826-73229845 | MsG0880046421.01.T01:intron | 50.0% |
| !! | CAAGGCAACATTGGCTCCTA+GGG | + | Chr8:73229327-73229346 | None:intergenic | 50.0% |
| !! | TGGCCGGCGAAATGGATTTT+GGG | - | Chr8:73229827-73229846 | MsG0880046421.01.T01:intron | 50.0% |
| AATGGTACCTTCCCGGAGTC+TGG | + | Chr8:73229075-73229094 | None:intergenic | 55.0% | |
| CTTGTGTTGCAATGGCCGTC+TGG | + | Chr8:73229654-73229673 | None:intergenic | 55.0% | |
| GCCATGGAGACTCCAACCTT+TGG | + | Chr8:73229871-73229890 | None:intergenic | 55.0% | |
| GGCCCCAAAATCCATTTCGC+CGG | + | Chr8:73229833-73229852 | None:intergenic | 55.0% | |
| TACCTTCCCGGAGTCTGGTA+CGG | + | Chr8:73229070-73229089 | None:intergenic | 55.0% | |
| TGCAATGGCCGTCTGGGTTA+GGG | + | Chr8:73229647-73229666 | None:intergenic | 55.0% | |
| TTGCAATGGCCGTCTGGGTT+AGG | + | Chr8:73229648-73229667 | None:intergenic | 55.0% | |
| !! | GCAAGGCAACATTGGCTCCT+AGG | + | Chr8:73229328-73229347 | None:intergenic | 55.0% |
| !! | GGCCGGCGAAATGGATTTTG+GGG | - | Chr8:73229828-73229847 | MsG0880046421.01.T01:intron | 55.0% |
| GCCGAAGCCAGCAGTCAACT+TGG | + | Chr8:73229372-73229391 | None:intergenic | 60.0% | |
| GCTACCGCGGATCCAAACAG+AGG | - | Chr8:73228393-73228412 | MsG0880046421.01.T01:intron | 60.0% | |
| TACCGTACCAGACTCCGGGA+AGG | - | Chr8:73229065-73229084 | MsG0880046421.01.T01:intron | 60.0% | |
| ! | CAATGGCCGTCTGGGTTAGG+GGG | + | Chr8:73229645-73229664 | None:intergenic | 60.0% |
| ! | GCAATGGCCGTCTGGGTTAG+GGG | + | Chr8:73229646-73229665 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 73228076 | 73229903 | 73228076 | ID=MsG0880046421.01;Name=MsG0880046421.01 |
| Chr8 | mRNA | 73228076 | 73229903 | 73228076 | ID=MsG0880046421.01.T01;Parent=MsG0880046421.01;Name=MsG0880046421.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|1|1|5|0|273 |
| Chr8 | exon | 73229855 | 73229903 | 73229855 | ID=MsG0880046421.01.T01:exon:18948;Parent=MsG0880046421.01.T01 |
| Chr8 | exon | 73229620 | 73229752 | 73229620 | ID=MsG0880046421.01.T01:exon:18947;Parent=MsG0880046421.01.T01 |
| Chr8 | exon | 73228893 | 73228995 | 73228893 | ID=MsG0880046421.01.T01:exon:18946;Parent=MsG0880046421.01.T01 |
| Chr8 | exon | 73228553 | 73228779 | 73228553 | ID=MsG0880046421.01.T01:exon:18945;Parent=MsG0880046421.01.T01 |
| Chr8 | exon | 73228076 | 73228385 | 73228076 | ID=MsG0880046421.01.T01:exon:18944;Parent=MsG0880046421.01.T01 |
| Chr8 | CDS | 73229855 | 73229903 | 73229855 | ID=MsG0880046421.01.T01:cds;Parent=MsG0880046421.01.T01 |
| Chr8 | CDS | 73229620 | 73229752 | 73229620 | ID=MsG0880046421.01.T01:cds;Parent=MsG0880046421.01.T01 |
| Chr8 | CDS | 73228893 | 73228995 | 73228893 | ID=MsG0880046421.01.T01:cds;Parent=MsG0880046421.01.T01 |
| Chr8 | CDS | 73228553 | 73228779 | 73228553 | ID=MsG0880046421.01.T01:cds;Parent=MsG0880046421.01.T01 |
| Chr8 | CDS | 73228076 | 73228385 | 73228076 | ID=MsG0880046421.01.T01:cds;Parent=MsG0880046421.01.T01 |
| Gene Sequence |
| Protein sequence |
