AlfalfaGEDB | MsG0280011133.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011133.01

KEGG: -
GO: GO:0003676 GO:0005515
PFAM: PF00076 PF01535

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011133.01.T01	XP_003601657.1	91.667	120	8	1	180	299	5	122	1.72E-63	208

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011133.01.T01	Q9LIS2	57.983	119	45	4	180	297	5	119	5.00E-37	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011133.01.T01	G7JA80	91.667	120	8	1	180	299	5	122	8.21e-64	208

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280009372.01	MsG0280011133.01	0.800969	1.122884e-48	5.299681e-46
MsG0280010995.01	MsG0280011133.01	0.801259	9.797082e-49	4.657649e-46
MsG0280011133.01	MsG0480018401.01	0.802204	6.269706e-49	3.052802e-46
MsG0280011133.01	MsG0480021913.01	0.837669	4.536256e-57	5.935351e-54
MsG0280011133.01	MsG0480023962.01	0.803777	2.965401e-49	1.503197e-46
MsG0280011133.01	MsG0480023968.01	0.827441	1.562248e-54	1.508406e-51
MsG0280011133.01	MsG0680030285.01	0.805915	1.059900e-49	5.676654e-47
MsG0280011133.01	MsG0680033646.01	0.812912	3.338844e-51	2.149514e-48
MsG0280011133.01	MsG0780040045.01	0.820335	7.243166e-53	5.714671e-50
MsG0280011133.01	MsG0780040949.01	0.808187	3.502815e-50	1.989729e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011133.01.T01	MTR_3g084040	91.667	120	8	1	180	299	5	122	2.08e-67	208
MsG0280011133.01.T01	MTR_3g084040	89.691	97	8	1	180	276	5	99	6.07e-56	177
MsG0280011133.01.T01	MTR_2g099410	68.657	134	7	1	33	131	103	236	1.12e-51	171
MsG0280011133.01.T01	MTR_2g099410	61.111	72	19	2	132	194	105	176	8.30e-15	73.2
MsG0280011133.01.T01	MTR_4g109540	52.586	116	50	3	181	291	6	121	9.72e-31	117
MsG0280011133.01.T01	MTR_7g013740	47.368	114	57	2	181	291	6	119	5.80e-30	112
MsG0280011133.01.T01	MTR_7g013730	54.545	99	40	2	202	299	29	123	2.59e-29	113
MsG0280011133.01.T01	MTR_4g109540	49.194	124	50	4	181	291	6	129	3.13e-28	110
MsG0280011133.01.T01	MTR_3g025880	51.961	102	41	3	202	299	30	127	1.37e-24	103
MsG0280011133.01.T01	MTR_3g080130	50.588	85	41	1	213	296	36	120	5.14e-24	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011133.01.T01	AT3G23830	57.983	119	45	4	180	297	5	119	5.10e-38	132
MsG0280011133.01.T01	AT3G23830	57.983	119	45	4	180	297	5	119	5.10e-38	132
MsG0280011133.01.T01	AT4G13850	59.664	119	43	4	180	297	5	119	2.46e-37	130
MsG0280011133.01.T01	AT4G13850	60.000	115	42	3	180	293	5	116	2.64e-37	130
MsG0280011133.01.T01	AT4G13850	59.664	119	43	4	180	297	5	119	3.21e-37	130
MsG0280011133.01.T01	AT4G13850	59.664	119	43	4	180	297	5	119	3.72e-37	130
MsG0280011133.01.T01	AT5G61030	55.556	117	45	3	180	291	5	119	1.28e-33	126
MsG0280011133.01.T01	AT5G61030	55.556	117	45	3	180	291	5	119	1.28e-33	126
MsG0280011133.01.T01	AT1G74230	53.211	109	47	1	180	288	5	109	2.17e-31	119
MsG0280011133.01.T01	AT5G47320	57.282	103	42	2	189	290	8	109	9.05e-29	110

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Find 84 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACAAGATGATTGAGA+TGG	0.594568	2:-80020779	MsG0280011133.01.T01:CDS
AAAGCTTGCTTGAAGACATG+TGG	0.718559	2:+80017188	None:intergenic
AACCTACGGAGAAGTGGTTG+AGG	0.621999	2:-80017110	MsG0280011133.01.T01:CDS
AAGGAACAAGATGATTGAGA+TGG	0.616432	2:-80019455	MsG0280011133.01.T01:CDS
AAGGATGCATTTACAACCTA+CGG	0.532917	2:-80017124	MsG0280011133.01.T01:CDS
AATATAGTGTCAGAATACAA+TGG	0.656425	2:+80020811	None:intergenic
ACAAGATTGGAAACCTCTTG+AGG	0.658250	2:-80017273	MsG0280011133.01.T01:intron
ACTGGAAGATCAAGGGGATT+TGG	0.334462	2:-80017064	MsG0280011133.01.T01:CDS
ACTTCAGCACTCTCTATGGA+TGG	0.581897	2:-80017010	MsG0280011133.01.T01:CDS
ACTTTCTGAACAAATTTATC+AGG	0.290581	2:+80020506	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAAGCTCTTCCTTAG+AGG	+	Chr2:80020444-80020463	None:intergenic	30.0%
AAAGAACAAGATGATTGAGA+TGG	-	Chr2:80018101-80018120	MsG0280011133.01.T01:intron	30.0%
AAGATCTATGGAAGAAGAAT+GGG	+	Chr2:80017014-80017033	None:intergenic	30.0%
ACCTACACTTGAAAGATTAA+AGG	-	Chr2:80017736-80017755	MsG0280011133.01.T01:intron	30.0%
AGAGCTTATTATTAGTGATG+AGG	-	Chr2:80019344-80019363	MsG0280011133.01.T01:intron	30.0%
AGCAAAATTACAAAAGAGGT+CGG	-	Chr2:80020173-80020192	MsG0280011133.01.T01:intron	30.0%
AGCATCACTAGTATATAGAT+TGG	+	Chr2:80018835-80018854	None:intergenic	30.0%
ATAGTGAATGTCAATGAATC+CGG	+	Chr2:80018272-80018291	None:intergenic	30.0%
ATCTAATTTCCTGCATTTGA+TGG	-	Chr2:80018621-80018640	MsG0280011133.01.T01:intron	30.0%
CAACAGAACTTCTAATTAGT+TGG	+	Chr2:80017620-80017639	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	80016725	80022177	80016725	ID=MsG0280011133.01;Name=MsG0280011133.01
Chr2	mRNA	80016725	80022177	80016725	ID=MsG0280011133.01.T01;Parent=MsG0280011133.01;Name=MsG0280011133.01.T01;_AED=0.46;_eAED=0.55;_QI=0\|0\|0\|1\|1\|1\|6\|0\|327
Chr2	exon	80022076	80022177	80022076	ID=MsG0280011133.01.T01:exon:21511;Parent=MsG0280011133.01.T01
Chr2	exon	80020706	80020887	80020706	ID=MsG0280011133.01.T01:exon:21510;Parent=MsG0280011133.01.T01
Chr2	exon	80020493	80020601	80020493	ID=MsG0280011133.01.T01:exon:21509;Parent=MsG0280011133.01.T01
Chr2	exon	80019414	80019563	80019414	ID=MsG0280011133.01.T01:exon:21508;Parent=MsG0280011133.01.T01
Chr2	exon	80016912	80017290	80016912	ID=MsG0280011133.01.T01:exon:21507;Parent=MsG0280011133.01.T01
Chr2	exon	80016725	80016786	80016725	ID=MsG0280011133.01.T01:exon:21506;Parent=MsG0280011133.01.T01
Chr2	CDS	80022076	80022177	80022076	ID=MsG0280011133.01.T01:cds;Parent=MsG0280011133.01.T01
Chr2	CDS	80020706	80020887	80020706	ID=MsG0280011133.01.T01:cds;Parent=MsG0280011133.01.T01
Chr2	CDS	80020493	80020601	80020493	ID=MsG0280011133.01.T01:cds;Parent=MsG0280011133.01.T01
Chr2	CDS	80019414	80019563	80019414	ID=MsG0280011133.01.T01:cds;Parent=MsG0280011133.01.T01
Chr2	CDS	80016912	80017290	80016912	ID=MsG0280011133.01.T01:cds;Parent=MsG0280011133.01.T01
Chr2	CDS	80016725	80016786	80016725	ID=MsG0280011133.01.T01:cds;Parent=MsG0280011133.01.T01

Gene Sequence

>MsG0280011133.01.T01

ATGATTGATTGGTTTATGAGATTGGTTCTTGATGTTGTGGTGAGGATTGTTGCGCAGGTTGTGATGAAAATTGTTGTATCTCTGTGTGATTGTGTATTACAGGTTTTCGAGTTTATTATCAGTGATGAGGAAGCTGGGTATGATAAATGGCTGCTGCCATTGTATTCTGACACTATATTGTTGCTGGGAAAGAACAAGATGATTGAGATGGCGGAAGAGATGTTCAATCAAGTTGTGGAAAAGGGGTTGAAACCAGATACGAGGTTGTTCAATGAGATGATCGGGAATCTAATGAATAATGGAGAACATGAACTGGTTGAAACTTTGAAAAAAGAGAGTTTTGACTATGTCAATAAACCTGATAAATTTGTTCAGAAAGTCCAGCTGAAACATGTTTTAGAGCTTATTATTAGTGATGAGGAAGCAGGATATGATACATTGCTGGAACAGTTGTATTCTGACATGATACTGTTTTTGGGAAGGAACAAGATGATTGAGATGGCAGAAGAGATGTTCAATCGGGTGGTTGAAACTGGAAACGAGATTGGAAACCTCTTGAGGCAAGGTGGTACCCAGAGCACTCAAGCTCCTCCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGATCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCACTCAAGAGTCTGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGCCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTCCCGGAGGTGGCTATGGCGGTGGCGGCGGTGGTTGTGTTGAGGTGGATTTGTCTTCCTTCCCTTTTGCAACGTATTATGGTGAAACTTCTTAA

Protein sequence

>MsG0280011133.01.T01

MIDWFMRLVLDVVVRIVAQVVMKIVVSLCDCVLQVFEFIISDEEAGYDKWLLPLYSDTILLLGKNKMIEMAEEMFNQVVEKGLKPDTRLFNEMIGNLMNNGEHELVETLKKESFDYVNKPDKFVQKVQLKHVLELIISDEEAGYDTLLEQLYSDMILFLGRNKMIEMAEEMFNRVVETGNEIGNLLRQGGTQSTQAPPPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTTQESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGGCVEVDLSSFPFATYYGETS*