Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023968.01.T01 | XP_003631000.1 | 97.115 | 104 | 3 | 0 | 62 | 165 | 204 | 307 | 3.87E-64 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023968.01.T01 | Q9LHE5 | 76.699 | 103 | 24 | 0 | 62 | 164 | 207 | 309 | 1.72E-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023968.01.T01 | G7LBI9 | 97.115 | 104 | 3 | 0 | 62 | 165 | 204 | 307 | 1.85e-64 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048135.01 | MsG0480023968.01 | 0.841807 | 3.797632e-58 | 5.644160e-55 |
| MsG0080048971.01 | MsG0480023968.01 | 0.805031 | 1.624291e-49 | 8.503758e-47 |
| MsG0180000139.01 | MsG0480023968.01 | 0.841656 | 4.162874e-58 | 6.158077e-55 |
| MsG0180000444.01 | MsG0480023968.01 | 0.828922 | 6.865147e-55 | 6.920172e-52 |
| MsG0180000614.01 | MsG0480023968.01 | 0.833646 | 4.732417e-56 | 5.483860e-53 |
| MsG0180000615.01 | MsG0480023968.01 | 0.803653 | 3.145598e-49 | 1.589453e-46 |
| MsG0180001131.01 | MsG0480023968.01 | 0.834573 | 2.772331e-56 | 3.303599e-53 |
| MsG0180001141.01 | MsG0480023968.01 | 0.828756 | 7.534337e-55 | 7.557655e-52 |
| MsG0180002458.01 | MsG0480023968.01 | 0.894052 | 3.543996e-75 | 3.466079e-71 |
| MsG0180003073.01 | MsG0480023968.01 | 0.815614 | 8.446047e-52 | 5.851882e-49 |
| MsG0180003097.01 | MsG0480023968.01 | 0.815550 | 8.728841e-52 | 6.036614e-49 |
| MsG0180003117.01 | MsG0480023968.01 | 0.863627 | 2.174636e-64 | 6.636280e-61 |
| MsG0180003612.01 | MsG0480023968.01 | 0.817900 | 2.593957e-52 | 1.913102e-49 |
| MsG0180003651.01 | MsG0480023968.01 | 0.862967 | 3.482497e-64 | 1.038745e-60 |
| MsG0180003793.01 | MsG0480023968.01 | 0.836424 | 9.433330e-57 | 1.188341e-53 |
| MsG0180004129.01 | MsG0480023968.01 | 0.862751 | 4.060181e-64 | 1.202240e-60 |
| MsG0180004130.01 | MsG0480023968.01 | 0.866110 | 3.623567e-65 | 1.207236e-61 |
| MsG0180004463.01 | MsG0480023968.01 | 0.812523 | 4.062105e-51 | 2.588648e-48 |
| MsG0180004482.01 | MsG0480023968.01 | 0.803731 | 3.030379e-49 | 1.534364e-46 |
| MsG0180004509.01 | MsG0480023968.01 | 0.817228 | 3.677471e-52 | 2.662660e-49 |
| MsG0180004548.01 | MsG0480023968.01 | 0.830138 | 3.477022e-55 | 3.631694e-52 |
| MsG0180004656.01 | MsG0480023968.01 | 0.886162 | 4.345674e-72 | 3.069571e-68 |
| MsG0180004854.01 | MsG0480023968.01 | 0.829362 | 5.369658e-55 | 5.484115e-52 |
| MsG0180005426.01 | MsG0480023968.01 | 0.811210 | 7.846160e-51 | 4.827723e-48 |
| MsG0180005659.01 | MsG0480023968.01 | 0.885815 | 5.871134e-72 | 4.090051e-68 |
| MsG0180005851.01 | MsG0480023968.01 | 0.857875 | 1.211138e-62 | 3.033189e-59 |
| MsG0180005957.01 | MsG0480023968.01 | 0.857193 | 1.928979e-62 | 4.721857e-59 |
| MsG0280006406.01 | MsG0480023968.01 | 0.853463 | 2.350662e-61 | 5.083454e-58 |
| MsG0280006422.01 | MsG0480023968.01 | 0.801798 | 7.596290e-49 | 3.660884e-46 |
| MsG0280006424.01 | MsG0480023968.01 | 0.814000 | 1.925350e-51 | 1.276596e-48 |
| MsG0280010776.01 | MsG0480023968.01 | 0.821238 | 4.490086e-53 | 3.632729e-50 |
| MsG0280010778.01 | MsG0480023968.01 | 0.805405 | 1.356257e-49 | 7.169317e-47 |
| MsG0280011133.01 | MsG0480023968.01 | 0.827441 | 1.562248e-54 | 1.508406e-51 |
| MsG0280011387.01 | MsG0480023968.01 | 0.858531 | 7.725841e-63 | 1.977932e-59 |
| MsG0380011659.01 | MsG0480023968.01 | 0.873836 | 1.079314e-67 | 4.751266e-64 |
| MsG0380012108.01 | MsG0480023968.01 | 0.869127 | 3.907649e-66 | 1.449943e-62 |
| MsG0380012122.01 | MsG0480023968.01 | 0.803181 | 3.940746e-49 | 1.967274e-46 |
| MsG0380012566.01 | MsG0480023968.01 | 0.877856 | 4.490677e-69 | 2.293386e-65 |
| MsG0380013178.01 | MsG0480023968.01 | 0.901799 | 1.858838e-78 | 2.552649e-74 |
| MsG0380014577.01 | MsG0480023968.01 | 0.803456 | 3.456661e-49 | 1.737828e-46 |
| MsG0380014647.01 | MsG0480023968.01 | 0.809659 | 1.696144e-50 | 1.001771e-47 |
| MsG0480019620.01 | MsG0480023968.01 | 0.805697 | 1.177722e-49 | 6.272812e-47 |
| MsG0480020136.01 | MsG0480023968.01 | 0.809219 | 2.108394e-50 | 1.230736e-47 |
| MsG0480020874.01 | MsG0480023968.01 | 0.819858 | 9.311885e-53 | 7.250424e-50 |
| MsG0480020959.01 | MsG0480023968.01 | 0.807096 | 5.971655e-50 | 3.296596e-47 |
| MsG0480021006.01 | MsG0480023968.01 | 0.822292 | 2.561592e-53 | 2.135191e-50 |
| MsG0480021164.01 | MsG0480023968.01 | 0.802166 | 6.382948e-49 | 3.105069e-46 |
| MsG0480021904.01 | MsG0480023968.01 | 0.807245 | 5.553532e-50 | 3.077837e-47 |
| MsG0480022549.01 | MsG0480023968.01 | 0.814403 | 1.568397e-51 | 1.051430e-48 |
| MsG0480022791.01 | MsG0480023968.01 | 0.814941 | 1.191851e-51 | 8.106294e-49 |
| MsG0480022795.01 | MsG0480023968.01 | 0.811075 | 8.392173e-51 | 5.145354e-48 |
| MsG0480022913.01 | MsG0480023968.01 | 0.823175 | 1.595768e-53 | 1.363834e-50 |
| MsG0480023149.01 | MsG0480023968.01 | 0.805192 | 1.502899e-49 | 7.900943e-47 |
| MsG0480023814.01 | MsG0480023968.01 | 0.803474 | 3.427286e-49 | 1.723856e-46 |
| MsG0480023968.01 | MsG0580024165.01 | 0.826915 | 2.087670e-54 | 1.984964e-51 |
| MsG0480023968.01 | MsG0580024390.01 | 0.875182 | 3.769307e-68 | 1.743787e-64 |
| MsG0480023968.01 | MsG0580024874.01 | 0.809007 | 2.340541e-50 | 1.358416e-47 |
| MsG0480023968.01 | MsG0580024961.01 | 0.829967 | 3.826999e-55 | 3.977519e-52 |
| MsG0480023968.01 | MsG0580024974.01 | 0.842612 | 2.325100e-58 | 3.544613e-55 |
| MsG0480023968.01 | MsG0580025400.01 | 0.833831 | 4.254665e-56 | 4.958095e-53 |
| MsG0480023968.01 | MsG0580025421.01 | 0.829431 | 5.167168e-55 | 5.287421e-52 |
| MsG0480023968.01 | MsG0580027043.01 | 0.852724 | 3.825456e-61 | 8.067908e-58 |
| MsG0480023968.01 | MsG0580030080.01 | 0.809114 | 2.220605e-50 | 1.292574e-47 |
| MsG0480023968.01 | MsG0680030285.01 | 0.845356 | 4.273294e-59 | 7.102872e-56 |
| MsG0480023968.01 | MsG0680030414.01 | 0.849907 | 2.391634e-60 | 4.604367e-57 |
| MsG0480023968.01 | MsG0680030721.01 | 0.833928 | 4.023034e-56 | 4.702120e-53 |
| MsG0480023968.01 | MsG0680031628.01 | 0.831587 | 1.533786e-55 | 1.671982e-52 |
| MsG0480023968.01 | MsG0680035704.01 | 0.803508 | 3.372077e-49 | 1.697647e-46 |
| MsG0480023968.01 | MsG0780036240.01 | 0.810308 | 1.229481e-50 | 7.385546e-48 |
| MsG0480023968.01 | MsG0780036546.01 | 0.860059 | 2.688615e-63 | 7.255428e-60 |
| MsG0480023968.01 | MsG0780036547.01 | 0.875494 | 2.947392e-68 | 1.378879e-64 |
| MsG0480023968.01 | MsG0780036705.01 | 0.821562 | 3.780577e-53 | 3.086436e-50 |
| MsG0480023968.01 | MsG0780036813.01 | 0.840206 | 9.999452e-58 | 1.414220e-54 |
| MsG0480023968.01 | MsG0780036964.01 | 0.815660 | 8.249632e-52 | 5.722642e-49 |
| MsG0480023968.01 | MsG0780036965.01 | 0.821155 | 4.693115e-53 | 3.788249e-50 |
| MsG0480023968.01 | MsG0780038400.01 | 0.856613 | 2.857324e-62 | 6.859453e-59 |
| MsG0480023968.01 | MsG0780039258.01 | 0.808028 | 3.786331e-50 | 2.141674e-47 |
| MsG0480023968.01 | MsG0780040057.01 | 0.819987 | 8.701064e-53 | 6.799310e-50 |
| MsG0480023968.01 | MsG0780040338.01 | 0.813246 | 2.819967e-51 | 1.831853e-48 |
| MsG0480023968.01 | MsG0780040949.01 | 0.840905 | 6.559155e-58 | 9.479628e-55 |
| MsG0480023968.01 | MsG0780041137.01 | 0.826230 | 3.040150e-54 | 2.834316e-51 |
| MsG0480023968.01 | MsG0780041223.01 | 0.826801 | 2.222678e-54 | 2.106132e-51 |
| MsG0480023968.01 | MsG0780041402.01 | 0.854778 | 9.813229e-62 | 2.216527e-58 |
| MsG0480023968.01 | MsG0780041462.01 | 0.812131 | 4.945707e-51 | 3.118659e-48 |
| MsG0480023968.01 | MsG0780041519.01 | 0.820376 | 7.086424e-53 | 5.597827e-50 |
| MsG0480023968.01 | MsG0780041688.01 | 0.850533 | 1.597189e-60 | 3.138151e-57 |
| MsG0480023968.01 | MsG0880042581.01 | 0.882369 | 1.103852e-70 | 6.705828e-67 |
| MsG0480023968.01 | MsG0880045124.01 | 0.825169 | 5.428256e-54 | 4.910341e-51 |
| MsG0480023968.01 | MsG0880046321.01 | 0.840631 | 7.740131e-58 | 1.109113e-54 |
| MsG0480023968.01 | MsG0880046328.01 | 0.804291 | 2.318232e-49 | 1.190784e-46 |
| MsG0480023968.01 | MsG0880046449.01 | 0.824068 | 9.861292e-54 | 8.643111e-51 |
| MsG0480023968.01 | MsG0880046575.01 | 0.915697 | 4.326580e-85 | 1.145288e-80 |
| MsG0480023968.01 | MsG0880046631.01 | 0.833044 | 6.684483e-56 | 7.608559e-53 |
| MsG0480023968.01 | MsG0880047286.01 | 0.844488 | 7.327847e-59 | 1.184956e-55 |
| MsG0480023968.01 | MsG0880047427.01 | 0.840678 | 7.525013e-58 | 1.079895e-54 |
| MsG0480023968.01 | MsG0880047448.01 | 0.862796 | 3.930466e-64 | 1.165760e-60 |
| MsG0380015027.01 | MsG0480023968.01 | 0.812448 | 4.218303e-51 | 2.682946e-48 |
| MsG0380017788.01 | MsG0480023968.01 | 0.860664 | 1.764008e-63 | 4.859868e-60 |
| MsG0380017857.01 | MsG0480023968.01 | 0.833424 | 5.376150e-56 | 6.188826e-53 |
| MsG0380017866.01 | MsG0480023968.01 | 0.827147 | 1.836798e-54 | 1.758211e-51 |
| MsG0280006993.01 | MsG0480023968.01 | 0.862566 | 4.628117e-64 | 1.361419e-60 |
| MsG0280007222.01 | MsG0480023968.01 | 0.842105 | 3.167349e-58 | 4.752620e-55 |
| MsG0280008118.01 | MsG0480023968.01 | 0.810790 | 9.673635e-51 | 5.886321e-48 |
| MsG0280008283.01 | MsG0480023968.01 | 0.833115 | 6.417627e-56 | 7.320464e-53 |
| MsG0280009230.01 | MsG0480023968.01 | 0.844821 | 5.962221e-59 | 9.742553e-56 |
| MsG0280009372.01 | MsG0480023968.01 | 0.832014 | 1.203829e-55 | 1.328867e-52 |
| MsG0280009375.01 | MsG0480023968.01 | 0.870146 | 1.818597e-66 | 6.999997e-63 |
| MsG0280009716.01 | MsG0480023968.01 | 0.819924 | 8.995555e-53 | 7.017159e-50 |
| MsG0280010383.01 | MsG0480023968.01 | 0.850429 | 1.707500e-60 | 3.343921e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023968.01.T01 | MTR_8g106010 | 97.115 | 104 | 3 | 0 | 62 | 165 | 204 | 307 | 4.69e-68 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023968.01.T01 | AT3G20000 | 76.699 | 103 | 24 | 0 | 62 | 164 | 136 | 238 | 3.10e-54 | 171 |
| MsG0480023968.01.T01 | AT3G20000 | 76.699 | 103 | 24 | 0 | 62 | 164 | 207 | 309 | 1.76e-53 | 172 |
| MsG0480023968.01.T01 | AT1G50400 | 69.307 | 101 | 31 | 0 | 62 | 162 | 208 | 308 | 6.41e-45 | 150 |
Find 44 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTGCTGCCGTACTTGCC+TGG | 0.258773 | 4:-91787898 | MsG0480023968.01.T01:CDS |
| AAAGACTACAAATTTGGATT+TGG | 0.302340 | 4:-91785600 | MsG0480023968.01.T01:CDS |
| GACTGCTGCCGTACTTGCCT+GGG | 0.343913 | 4:-91787897 | MsG0480023968.01.T01:CDS |
| ATCTATATTCCCACAATTCA+TGG | 0.348139 | 4:+91787873 | None:intergenic |
| GAACATGGAGGTTGGGTCAA+TGG | 0.429384 | 4:+91787824 | None:intergenic |
| AGAGACGTCACTGCTAGCTT+TGG | 0.445106 | 4:-91787117 | MsG0480023968.01.T01:CDS |
| TTTGGATTTGGTTTGACCGT+TGG | 0.447555 | 4:-91785588 | MsG0480023968.01.T01:CDS |
| CTGGGTAGAACATGGAGGTT+GGG | 0.472515 | 4:+91787817 | None:intergenic |
| GCTGGGTAGAACATGGAGGT+TGG | 0.485943 | 4:+91787816 | None:intergenic |
| CAAAAGAACCATTCCAGTGC+TGG | 0.487484 | 4:+91787281 | None:intergenic |
| TGCCTGGGGCCATGAATTGT+GGG | 0.491846 | 4:-91787882 | MsG0480023968.01.T01:CDS |
| TATTAAATACCATGCGGGTA+TGG | 0.494418 | 4:-91788004 | MsG0480023968.01.T01:intron |
| ACAGGACAAGTTGCCAGCAC+TGG | 0.498458 | 4:-91787294 | MsG0480023968.01.T01:CDS |
| TTCATGGCCCCAGGCAAGTA+CGG | 0.512618 | 4:+91787889 | None:intergenic |
| ATCTGCATCCAGGTTGCCAC+AGG | 0.518788 | 4:-91787312 | MsG0480023968.01.T01:intron |
| TGGAATCAACCTTTCCCCTA+AGG | 0.518820 | 4:+91785855 | None:intergenic |
| GTCAATGGAGGAATAGATAA+GGG | 0.523387 | 4:+91787839 | None:intergenic |
| ATAGTGCCGCCTTAGGGGAA+AGG | 0.523846 | 4:-91785864 | MsG0480023968.01.T01:intron |
| GGTCAATGGAGGAATAGATA+AGG | 0.525070 | 4:+91787838 | None:intergenic |
| TTGCCTGGGGCCATGAATTG+TGG | 0.527139 | 4:-91787883 | MsG0480023968.01.T01:CDS |
| GAATTTCATTCTTTCTGCAG+AGG | 0.535381 | 4:-91785786 | MsG0480023968.01.T01:intron |
| TTCCCACAATTCATGGCCCC+AGG | 0.543992 | 4:+91787880 | None:intergenic |
| AGCTCTAATTTATTCTCCAA+CGG | 0.548927 | 4:+91785572 | None:intergenic |
| AAAAGCAGCACAAACACCAT+TGG | 0.560296 | 4:+91785835 | None:intergenic |
| AGGGGAAAGGTTGATTCCAA+TGG | 0.561118 | 4:-91785851 | MsG0480023968.01.T01:CDS |
| TGTTCAGAAGGTTTCTGAGA+AGG | 0.565720 | 4:-91787253 | MsG0480023968.01.T01:intron |
| ACAAGTTGCCAGCACTGGAA+TGG | 0.569505 | 4:-91787289 | MsG0480023968.01.T01:CDS |
| TTTGGAGGAGAGGTTAAACA+TGG | 0.573440 | 4:-91785813 | MsG0480023968.01.T01:CDS |
| CCTCCATGTTCTACCCAGCA+AGG | 0.574068 | 4:-91787812 | MsG0480023968.01.T01:CDS |
| CTCCATGTTCTACCCAGCAA+GGG | 0.576522 | 4:-91787811 | MsG0480023968.01.T01:CDS |
| TTATGACTACATTCTCAGAC+AGG | 0.586877 | 4:-91787094 | MsG0480023968.01.T01:intron |
| ACTGCTGCCGTACTTGCCTG+GGG | 0.603059 | 4:-91787896 | MsG0480023968.01.T01:CDS |
| ATAGATATTAAATACCATGC+GGG | 0.612788 | 4:-91788009 | MsG0480023968.01.T01:CDS |
| AGTGCTGGCAACTTGTCCTG+TGG | 0.616700 | 4:+91787296 | None:intergenic |
| TAGCACTGTCACGTTGCGGA+AGG | 0.618595 | 4:-91787926 | MsG0480023968.01.T01:CDS |
| CATGGAGGTTGGGTCAATGG+AGG | 0.627344 | 4:+91787827 | None:intergenic |
| TCCATGTTCTACCCAGCAAG+GGG | 0.633825 | 4:-91787810 | MsG0480023968.01.T01:CDS |
| AATCAACCTTTCCCCTAAGG+CGG | 0.646753 | 4:+91785858 | None:intergenic |
| CCTATAGCACTGTCACGTTG+CGG | 0.649301 | 4:-91787930 | MsG0480023968.01.T01:intron |
| CATAGATATTAAATACCATG+CGG | 0.665262 | 4:-91788010 | MsG0480023968.01.T01:CDS |
| TTGGAGGAGAGGTTAAACAT+GGG | 0.679861 | 4:-91785812 | MsG0480023968.01.T01:CDS |
| AAAAGCATACCATACCCGCA+TGG | 0.684992 | 4:+91787995 | None:intergenic |
| CCTTGCTGGGTAGAACATGG+AGG | 0.685857 | 4:+91787812 | None:intergenic |
| CCATGTTCTACCCAGCAAGG+GGG | 0.738094 | 4:-91787809 | MsG0480023968.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCAATTAAAAATTTTAAAAT+AGG | + | Chr4:91787410-91787429 | None:intergenic | 10.0% |
| !!! | CCTATTTTAAAATTTTTAAT+TGG | - | Chr4:91787407-91787426 | MsG0480023968.01.T01:intron | 10.0% |
| !! | TACATGAATATGAAATAATA+AGG | - | Chr4:91785880-91785899 | MsG0480023968.01.T01:intron | 15.0% |
| !!! | AAATTCATTTTTAGTTTTCT+TGG | + | Chr4:91786035-91786054 | None:intergenic | 15.0% |
| !!! | ATATACATTTTATGCTAAAA+AGG | + | Chr4:91786979-91786998 | None:intergenic | 15.0% |
| !!! | GCTTTTAAATTGAATAAAAT+CGG | + | Chr4:91787678-91787697 | None:intergenic | 15.0% |
| !! | AAAATAGGCATAAAAAAATC+TGG | + | Chr4:91787395-91787414 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGACTACAAATT+TGG | - | Chr4:91787993-91788012 | MsG0480023968.01.T01:intron | 20.0% |
| !! | ACAGGATTATTATTAATATC+AGG | + | Chr4:91787553-91787572 | None:intergenic | 20.0% |
| !! | ATTTCATGTGAGAAATAAAA+AGG | + | Chr4:91786412-91786431 | None:intergenic | 20.0% |
| !! | CAGGATTATTATTAATATCA+GGG | + | Chr4:91787552-91787571 | None:intergenic | 20.0% |
| !! | TAAATATGAAAATCATGTCA+AGG | + | Chr4:91787954-91787973 | None:intergenic | 20.0% |
| !! | TTGTTAGAATAAATACTCAA+GGG | - | Chr4:91786129-91786148 | MsG0480023968.01.T01:intron | 20.0% |
| !! | TTTGTTAGAATAAATACTCA+AGG | - | Chr4:91786128-91786147 | MsG0480023968.01.T01:intron | 20.0% |
| !!! | AAACGTTTTTAGAAAACATA+TGG | + | Chr4:91787197-91787216 | None:intergenic | 20.0% |
| !!! | AACAACAAAGAGTTTTAAAA+AGG | + | Chr4:91787851-91787870 | None:intergenic | 20.0% |
| !!! | TAAATAGTCAAGAGTATTAT+AGG | + | Chr4:91786088-91786107 | None:intergenic | 20.0% |
| !!! | TTTAAAACTCTTTGTTGTTA+GGG | - | Chr4:91787852-91787871 | MsG0480023968.01.T01:CDS | 20.0% |
| !!! | TTTTAAAACTCTTTGTTGTT+AGG | - | Chr4:91787851-91787870 | MsG0480023968.01.T01:CDS | 20.0% |
| ! | AAAGACTACAAATTTGGATT+TGG | - | Chr4:91787999-91788018 | MsG0480023968.01.T01:intron | 25.0% |
| ! | AAATCGGTTAAATTTCATCA+CGG | + | Chr4:91787662-91787681 | None:intergenic | 25.0% |
| ! | ACAAATGTTGAAATCAGATA+AGG | + | Chr4:91787703-91787722 | None:intergenic | 25.0% |
| ! | ACATTGTTCTCATCTTATAT+GGG | - | Chr4:91786722-91786741 | MsG0480023968.01.T01:intron | 25.0% |
| ! | ATAGATATTAAATACCATGC+GGG | - | Chr4:91785590-91785609 | MsG0480023968.01.T01:CDS | 25.0% |
| ! | ATATGTGTATCCATTGAAAT+TGG | + | Chr4:91787291-91787310 | None:intergenic | 25.0% |
| ! | CATAGATATTAAATACCATG+CGG | - | Chr4:91785589-91785608 | MsG0480023968.01.T01:CDS | 25.0% |
| ! | CCATTGAAATTGGAAAAATT+AGG | + | Chr4:91787281-91787300 | None:intergenic | 25.0% |
| ! | GATTATTATGTTGTCGAATT+TGG | - | Chr4:91787597-91787616 | MsG0480023968.01.T01:intron | 25.0% |
| ! | GTATATCTCTTGTATTTCTT+CGG | - | Chr4:91786993-91787012 | MsG0480023968.01.T01:intron | 25.0% |
| ! | TAATAGTTACAGCTATAGAA+GGG | + | Chr4:91785849-91785868 | None:intergenic | 25.0% |
| ! | TATATCTCTTGTATTTCTTC+GGG | - | Chr4:91786994-91787013 | MsG0480023968.01.T01:intron | 25.0% |
| ! | TGAATAGATAACAACGAAAA+AGG | + | Chr4:91786224-91786243 | None:intergenic | 25.0% |
| !! | ATACTCTAGAAAACACATAA+TGG | - | Chr4:91786879-91786898 | MsG0480023968.01.T01:intron | 25.0% |
| !! | CCTAATTTTTCCAATTTCAA+TGG | - | Chr4:91787278-91787297 | MsG0480023968.01.T01:CDS | 25.0% |
| !! | TGCTCTGAATAAAATATGAA+AGG | + | Chr4:91787076-91787095 | None:intergenic | 25.0% |
| !! | TTTATTCAGAGCAACATTTT+TGG | - | Chr4:91787083-91787102 | MsG0480023968.01.T01:intron | 25.0% |
| !!! | AAGGGTTCTTTTTTAGTTAA+AGG | + | Chr4:91787510-91787529 | None:intergenic | 25.0% |
| !!! | AGGGTTCTTTTTTAGTTAAA+GGG | + | Chr4:91787509-91787528 | None:intergenic | 25.0% |
| !!! | TGTGTTTTCTAGAGTATTTT+CGG | + | Chr4:91786876-91786895 | None:intergenic | 25.0% |
| AATGTTGAAATCAGATAAGG+CGG | + | Chr4:91787700-91787719 | None:intergenic | 30.0% | |
| AATTATGTCTAACGTAAGCA+TGG | + | Chr4:91786592-91786611 | None:intergenic | 30.0% | |
| ACAAATCTACAATGTGATGA+TGG | + | Chr4:91786377-91786396 | None:intergenic | 30.0% | |
| ATCATTAATGCTAGCACTAT+TGG | - | Chr4:91786153-91786172 | MsG0480023968.01.T01:intron | 30.0% | |
| ATCTATATTCCCACAATTCA+TGG | + | Chr4:91785729-91785748 | None:intergenic | 30.0% | |
| ATGTTGTCGAATTTGGATTA+GGG | - | Chr4:91787604-91787623 | MsG0480023968.01.T01:intron | 30.0% | |
| CACATTGTTCTCATCTTATA+TGG | - | Chr4:91786721-91786740 | MsG0480023968.01.T01:intron | 30.0% | |
| CACGGTAAGCAAAATTTAAA+TGG | + | Chr4:91787644-91787663 | None:intergenic | 30.0% | |
| CATAACCAATGGTTTACAAT+TGG | + | Chr4:91785636-91785655 | None:intergenic | 30.0% | |
| CATATAAGATGAGAACAATG+TGG | + | Chr4:91786723-91786742 | None:intergenic | 30.0% | |
| CTAATAGTTACAGCTATAGA+AGG | + | Chr4:91785850-91785869 | None:intergenic | 30.0% | |
| CTTATCCAATTGTAAACCAT+TGG | - | Chr4:91785628-91785647 | MsG0480023968.01.T01:intron | 30.0% | |
| TATGTTGTCGAATTTGGATT+AGG | - | Chr4:91787603-91787622 | MsG0480023968.01.T01:intron | 30.0% | |
| TCATTAATGCTAGCACTATT+GGG | - | Chr4:91786154-91786173 | MsG0480023968.01.T01:intron | 30.0% | |
| TCTGATTTCAACATTTGTGT+TGG | - | Chr4:91787705-91787724 | MsG0480023968.01.T01:intron | 30.0% | |
| TCTGCAATATCAATTTACAG+CGG | - | Chr4:91787440-91787459 | MsG0480023968.01.T01:intron | 30.0% | |
| TGGAGTTTCATACTCAATTA+GGG | + | Chr4:91786703-91786722 | None:intergenic | 30.0% | |
| TTCTTCTATGAATTTAGCCA+CGG | - | Chr4:91786535-91786554 | MsG0480023968.01.T01:intron | 30.0% | |
| TTTCAATGGATACACATATC+TGG | - | Chr4:91787292-91787311 | MsG0480023968.01.T01:CDS | 30.0% | |
| ! | GTTGCTAATTTTTACTGTAG+AGG | - | Chr4:91787016-91787035 | MsG0480023968.01.T01:intron | 30.0% |
| AGACATAATTGAGCCTTGAA+CGG | - | Chr4:91786602-91786621 | MsG0480023968.01.T01:intron | 35.0% | |
| AGCAAAATTTAAATGGCCAC+CGG | + | Chr4:91787637-91787656 | None:intergenic | 35.0% | |
| AGTAATGCTTTGTCTTTCCT+TGG | - | Chr4:91787354-91787373 | MsG0480023968.01.T01:intron | 35.0% | |
| ATTGGAAAAATTAGGTGCTC+TGG | + | Chr4:91787273-91787292 | None:intergenic | 35.0% | |
| GAAGTTGGACACAAAAACTA+GGG | + | Chr4:91786953-91786972 | None:intergenic | 35.0% | |
| GAATTTCATTCTTTCTGCAG+AGG | - | Chr4:91787813-91787832 | MsG0480023968.01.T01:CDS | 35.0% | |
| GCAGCTTTCAAAAAACACTA+TGG | + | Chr4:91787173-91787192 | None:intergenic | 35.0% | |
| GTCAATGGAGGAATAGATAA+GGG | + | Chr4:91785763-91785782 | None:intergenic | 35.0% | |
| GTGGAGTTTCATACTCAATT+AGG | + | Chr4:91786704-91786723 | None:intergenic | 35.0% | |
| TATGAAAATCATGTCAAGGC+AGG | + | Chr4:91787950-91787969 | None:intergenic | 35.0% | |
| TATTAAATACCATGCGGGTA+TGG | - | Chr4:91785595-91785614 | MsG0480023968.01.T01:CDS | 35.0% | |
| TTATGACTACATTCTCAGAC+AGG | - | Chr4:91786505-91786524 | MsG0480023968.01.T01:intron | 35.0% | |
| ! | AACCATTGGTTATGCTACAA+AGG | - | Chr4:91785642-91785661 | MsG0480023968.01.T01:intron | 35.0% |
| ! | ACCATTGGTTATGCTACAAA+GGG | - | Chr4:91785643-91785662 | MsG0480023968.01.T01:intron | 35.0% |
| ! | ATTTTCGGCATCCAAATCAT+TGG | + | Chr4:91786861-91786880 | None:intergenic | 35.0% |
| ! | TATTTTATAGTGCCGCCTTA+GGG | - | Chr4:91787729-91787748 | MsG0480023968.01.T01:intron | 35.0% |
| ! | TCTTTTGAGCTATGTTCAGA+AGG | - | Chr4:91786334-91786353 | MsG0480023968.01.T01:intron | 35.0% |
| !! | TTATTTTATAGTGCCGCCTT+AGG | - | Chr4:91787728-91787747 | MsG0480023968.01.T01:intron | 35.0% |
| !! | TTTTGGCTGTCTTCTCTATT+TGG | - | Chr4:91787100-91787119 | MsG0480023968.01.T01:CDS | 35.0% |
| !!! | CCTTTTTAGCTGTCGTTTTA+GGG | - | Chr4:91785996-91786015 | MsG0480023968.01.T01:intron | 35.0% |
| !!! | TCCTTTTTAGCTGTCGTTTT+AGG | - | Chr4:91785995-91786014 | MsG0480023968.01.T01:intron | 35.0% |
| AAAAGCAGCACAAACACCAT+TGG | + | Chr4:91787767-91787786 | None:intergenic | 40.0% | |
| AATGCTTTGTCTTTCCTTGG+CGG | - | Chr4:91787357-91787376 | MsG0480023968.01.T01:intron | 40.0% | |
| ACCCTTTGTAGCATAACCAA+TGG | + | Chr4:91785647-91785666 | None:intergenic | 40.0% | |
| ACGACATGAATGTGAATGTG+TGG | - | Chr4:91786566-91786585 | MsG0480023968.01.T01:intron | 40.0% | |
| CAAATTGATCATCTGCATCC+AGG | - | Chr4:91786277-91786296 | MsG0480023968.01.T01:intron | 40.0% | |
| CCCTAAAACGACAGCTAAAA+AGG | + | Chr4:91785999-91786018 | None:intergenic | 40.0% | |
| CGAAGTTGGACACAAAAACT+AGG | + | Chr4:91786954-91786973 | None:intergenic | 40.0% | |
| CTCATCTTATATGGGTGCAT+CGG | - | Chr4:91786730-91786749 | MsG0480023968.01.T01:intron | 40.0% | |
| GACAGCTAAAAAGGAACAGA+GGG | + | Chr4:91785990-91786009 | None:intergenic | 40.0% | |
| GACATAATTGAGCCTTGAAC+GGG | - | Chr4:91786603-91786622 | MsG0480023968.01.T01:intron | 40.0% | |
| GGTCAATGGAGGAATAGATA+AGG | + | Chr4:91785764-91785783 | None:intergenic | 40.0% | |
| TGTTTCCTCTACTAGAACCA+GGG | - | Chr4:91787331-91787350 | MsG0480023968.01.T01:intron | 40.0% | |
| TTGGAGGAGAGGTTAAACAT+GGG | - | Chr4:91787787-91787806 | MsG0480023968.01.T01:intron | 40.0% | |
| TTGTTTCCTCTACTAGAACC+AGG | - | Chr4:91787330-91787349 | MsG0480023968.01.T01:intron | 40.0% | |
| TTTGGAGGAGAGGTTAAACA+TGG | - | Chr4:91787786-91787805 | MsG0480023968.01.T01:intron | 40.0% | |
| ! | AAAGACAAAGCATTACTCCC+TGG | + | Chr4:91787351-91787370 | None:intergenic | 40.0% |
| ! | ACTTGCTGCAATTGAAAGTG+TGG | - | Chr4:91786759-91786778 | MsG0480023968.01.T01:intron | 40.0% |
| ! | ATGCTAAAAAGGTGCGAAGT+TGG | + | Chr4:91786968-91786987 | None:intergenic | 40.0% |
| ! | ATTTTATAGTGCCGCCTTAG+GGG | - | Chr4:91787730-91787749 | MsG0480023968.01.T01:intron | 40.0% |
| ! | CAGTTAGAGTTGCTTTCATG+TGG | - | Chr4:91786639-91786658 | MsG0480023968.01.T01:intron | 40.0% |
| ! | TCATGTCGTACTATTTTCCG+TGG | + | Chr4:91786555-91786574 | None:intergenic | 40.0% |
| ! | TGTTCAGAAGGTTTCTGAGA+AGG | - | Chr4:91786346-91786365 | MsG0480023968.01.T01:intron | 40.0% |
| ! | TTGTCGAATTTGGATTAGGG+AGG | - | Chr4:91787607-91787626 | MsG0480023968.01.T01:intron | 40.0% |
| !! | TTTGGATTTGGTTTGACCGT+TGG | - | Chr4:91788011-91788030 | MsG0480023968.01.T01:CDS | 40.0% |
| !!! | TGGTGTTTGTGCTGCTTTTT+TGG | - | Chr4:91787768-91787787 | MsG0480023968.01.T01:intron | 40.0% |
| !!! | TGTACGTGTGCTGTTTGTTT+TGG | - | Chr4:91786824-91786843 | MsG0480023968.01.T01:intron | 40.0% |
| !!! | TGTTTGTGCTGCTTTTTTGG+AGG | - | Chr4:91787771-91787790 | MsG0480023968.01.T01:intron | 40.0% |
| AATCAACCTTTCCCCTAAGG+CGG | + | Chr4:91787744-91787763 | None:intergenic | 45.0% | |
| ACCTCTCATGTCAGTAACAC+AGG | + | Chr4:91787571-91787590 | None:intergenic | 45.0% | |
| ATCTTATATGGGTGCATCGG+AGG | - | Chr4:91786733-91786752 | MsG0480023968.01.T01:intron | 45.0% | |
| CAAAAGAACCATTCCAGTGC+TGG | + | Chr4:91786321-91786340 | None:intergenic | 45.0% | |
| CACTGCATCCTCCAATGATT+TGG | - | Chr4:91786847-91786866 | MsG0480023968.01.T01:intron | 45.0% | |
| CGACAGCTAAAAAGGAACAG+AGG | + | Chr4:91785991-91786010 | None:intergenic | 45.0% | |
| GATCCTAGTCAGCTTTCGAA+GGG | + | Chr4:91787528-91787547 | None:intergenic | 45.0% | |
| GTTGTTAGGGTGTGTGTGTT+TGG | - | Chr4:91787865-91787884 | MsG0480023968.01.T01:CDS | 45.0% | |
| TCACATGAAATGTTCCTCGC+AGG | - | Chr4:91786421-91786440 | MsG0480023968.01.T01:intron | 45.0% | |
| TCTTATATGGGTGCATCGGA+GGG | - | Chr4:91786734-91786753 | MsG0480023968.01.T01:intron | 45.0% | |
| TGAGCCTTGAACGGGATTAT+GGG | - | Chr4:91786611-91786630 | MsG0480023968.01.T01:intron | 45.0% | |
| TGATCCTAGTCAGCTTTCGA+AGG | + | Chr4:91787529-91787548 | None:intergenic | 45.0% | |
| TGGAATCAACCTTTCCCCTA+AGG | + | Chr4:91787747-91787766 | None:intergenic | 45.0% | |
| TTCGGCATCCAAATCATTGG+AGG | + | Chr4:91786858-91786877 | None:intergenic | 45.0% | |
| TTGAGCCTTGAACGGGATTA+TGG | - | Chr4:91786610-91786629 | MsG0480023968.01.T01:intron | 45.0% | |
| ! | AAAAGCATACCATACCCGCA+TGG | + | Chr4:91785607-91785626 | None:intergenic | 45.0% |
| ! | AGGGGAAAGGTTGATTCCAA+TGG | - | Chr4:91787748-91787767 | MsG0480023968.01.T01:intron | 45.0% |
| ! | TCCTGTGTTACTGACATGAG+AGG | - | Chr4:91787567-91787586 | MsG0480023968.01.T01:intron | 45.0% |
| ! | TTTGGATTAGGGAGGTCATC+CGG | - | Chr4:91787615-91787634 | MsG0480023968.01.T01:intron | 45.0% |
| !! | TTACTCCCTGGTTCTAGTAG+AGG | + | Chr4:91787339-91787358 | None:intergenic | 45.0% |
| !!! | CTATTTTAAAATTTTTAATT+GGG | - | Chr4:91787408-91787427 | MsG0480023968.01.T01:intron | 5.0% |
| CCTATAGCACTGTCACGTTG+CGG | - | Chr4:91785669-91785688 | MsG0480023968.01.T01:intron | 50.0% | |
| CTCCATGTTCTACCCAGCAA+GGG | - | Chr4:91785788-91785807 | MsG0480023968.01.T01:CDS | 50.0% | |
| CTGGGTAGAACATGGAGGTT+GGG | + | Chr4:91785785-91785804 | None:intergenic | 50.0% | |
| GAACATGGAGGTTGGGTCAA+TGG | + | Chr4:91785778-91785797 | None:intergenic | 50.0% | |
| GAACCCTTCGAAAGCTGACT+AGG | - | Chr4:91787522-91787541 | MsG0480023968.01.T01:intron | 50.0% | |
| TCCATGTTCTACCCAGCAAG+GGG | - | Chr4:91785789-91785808 | MsG0480023968.01.T01:CDS | 50.0% | |
| TGAGCCCATAATCCCGTTCA+AGG | + | Chr4:91786618-91786637 | None:intergenic | 50.0% | |
| ! | ACAAGTTGCCAGCACTGGAA+TGG | - | Chr4:91786310-91786329 | MsG0480023968.01.T01:intron | 50.0% |
| ! | AGAGACGTCACTGCTAGCTT+TGG | - | Chr4:91786482-91786501 | MsG0480023968.01.T01:intron | 50.0% |
| !!! | GTGCTGCTTTTTTGGAGGAG+AGG | - | Chr4:91787776-91787795 | MsG0480023968.01.T01:intron | 50.0% |
| ACAGGACAAGTTGCCAGCAC+TGG | - | Chr4:91786305-91786324 | MsG0480023968.01.T01:intron | 55.0% | |
| AGCAGCTAGAGAAACCTGCG+AGG | + | Chr4:91786438-91786457 | None:intergenic | 55.0% | |
| ATAGTGCCGCCTTAGGGGAA+AGG | - | Chr4:91787735-91787754 | MsG0480023968.01.T01:intron | 55.0% | |
| ATCTGCATCCAGGTTGCCAC+AGG | - | Chr4:91786287-91786306 | MsG0480023968.01.T01:intron | 55.0% | |
| CAACTTGTCCTGTGGCAACC+TGG | + | Chr4:91786298-91786317 | None:intergenic | 55.0% | |
| CATGGAGGTTGGGTCAATGG+AGG | + | Chr4:91785775-91785794 | None:intergenic | 55.0% | |
| CCATGTTCTACCCAGCAAGG+GGG | - | Chr4:91785790-91785809 | MsG0480023968.01.T01:CDS | 55.0% | |
| CCGCAACGTGACAGTGCTAT+AGG | + | Chr4:91785672-91785691 | None:intergenic | 55.0% | |
| CCTCCATGTTCTACCCAGCA+AGG | - | Chr4:91785787-91785806 | MsG0480023968.01.T01:CDS | 55.0% | |
| CCTTGCTGGGTAGAACATGG+AGG | + | Chr4:91785790-91785809 | None:intergenic | 55.0% | |
| GCTGGGTAGAACATGGAGGT+TGG | + | Chr4:91785786-91785805 | None:intergenic | 55.0% | |
| TAGCACTGTCACGTTGCGGA+AGG | - | Chr4:91785673-91785692 | MsG0480023968.01.T01:intron | 55.0% | |
| TGCCTGGGGCCATGAATTGT+GGG | - | Chr4:91785717-91785736 | MsG0480023968.01.T01:intron | 55.0% | |
| TTCACCATCTCCCCCTTGCT+GGG | + | Chr4:91785803-91785822 | None:intergenic | 55.0% | |
| TTCATGGCCCCAGGCAAGTA+CGG | + | Chr4:91785713-91785732 | None:intergenic | 55.0% | |
| TTCCCACAATTCATGGCCCC+AGG | + | Chr4:91785722-91785741 | None:intergenic | 55.0% | |
| TTGCCTGGGGCCATGAATTG+TGG | - | Chr4:91785716-91785735 | MsG0480023968.01.T01:intron | 55.0% | |
| !! | AGTGCTGGCAACTTGTCCTG+TGG | + | Chr4:91786306-91786325 | None:intergenic | 55.0% |
| ACTGCTGCCGTACTTGCCTG+GGG | - | Chr4:91785703-91785722 | MsG0480023968.01.T01:intron | 60.0% | |
| CCCCCTTGCTGGGTAGAACA+TGG | + | Chr4:91785793-91785812 | None:intergenic | 60.0% | |
| CTTCACCATCTCCCCCTTGC+TGG | + | Chr4:91785804-91785823 | None:intergenic | 60.0% | |
| GACTGCTGCCGTACTTGCCT+GGG | - | Chr4:91785702-91785721 | MsG0480023968.01.T01:intron | 60.0% | |
| GGATTAGGGAGGTCATCCGG+TGG | - | Chr4:91787618-91787637 | MsG0480023968.01.T01:intron | 60.0% | |
| GGCGTCACTGAAATCCGCCA+AGG | + | Chr4:91787374-91787393 | None:intergenic | 60.0% | |
| TCTACCCAGCAAGGGGGAGA+TGG | - | Chr4:91785796-91785815 | MsG0480023968.01.T01:CDS | 60.0% | |
| CGACTGCTGCCGTACTTGCC+TGG | - | Chr4:91785701-91785720 | MsG0480023968.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 91785581 | 91788040 | 91785581 | ID=MsG0480023968.01;Name=MsG0480023968.01 |
| Chr4 | mRNA | 91785581 | 91788040 | 91785581 | ID=MsG0480023968.01.T01;Parent=MsG0480023968.01;Name=MsG0480023968.01.T01;_AED=0.50;_eAED=0.69;_QI=0|0|0|1|0.8|0.83|6|0|165 |
| Chr4 | exon | 91788005 | 91788040 | 91788005 | ID=MsG0480023968.01.T01:exon:12809;Parent=MsG0480023968.01.T01 |
| Chr4 | exon | 91787790 | 91787945 | 91787790 | ID=MsG0480023968.01.T01:exon:12808;Parent=MsG0480023968.01.T01 |
| Chr4 | exon | 91787254 | 91787322 | 91787254 | ID=MsG0480023968.01.T01:exon:12807;Parent=MsG0480023968.01.T01 |
| Chr4 | exon | 91787095 | 91787178 | 91787095 | ID=MsG0480023968.01.T01:exon:12806;Parent=MsG0480023968.01.T01 |
| Chr4 | exon | 91785787 | 91785882 | 91785787 | ID=MsG0480023968.01.T01:exon:12805;Parent=MsG0480023968.01.T01 |
| Chr4 | exon | 91785581 | 91785637 | 91785581 | ID=MsG0480023968.01.T01:exon:12804;Parent=MsG0480023968.01.T01 |
| Chr4 | CDS | 91788005 | 91788040 | 91788005 | ID=MsG0480023968.01.T01:cds;Parent=MsG0480023968.01.T01 |
| Chr4 | CDS | 91787790 | 91787945 | 91787790 | ID=MsG0480023968.01.T01:cds;Parent=MsG0480023968.01.T01 |
| Chr4 | CDS | 91787254 | 91787322 | 91787254 | ID=MsG0480023968.01.T01:cds;Parent=MsG0480023968.01.T01 |
| Chr4 | CDS | 91787095 | 91787178 | 91787095 | ID=MsG0480023968.01.T01:cds;Parent=MsG0480023968.01.T01 |
| Chr4 | CDS | 91785787 | 91785882 | 91785787 | ID=MsG0480023968.01.T01:cds;Parent=MsG0480023968.01.T01 |
| Chr4 | CDS | 91785581 | 91785637 | 91785581 | ID=MsG0480023968.01.T01:cds;Parent=MsG0480023968.01.T01 |
| Gene Sequence |
| Protein sequence |
