AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007052.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007052.01.T01 MTR_2g019620 93.095 391 25 2 1 389 1 391 0.0 732
MsG0280007052.01.T01 MTR_7g117595 34.921 315 170 7 104 389 117 425 3.16e-47 167
MsG0280007052.01.T01 MTR_4g086860 37.874 301 164 5 100 389 98 386 1.15e-46 165
MsG0280007052.01.T01 MTR_7g117595 43.850 187 96 3 104 283 117 301 1.40e-41 150
MsG0280007052.01.T01 MTR_7g117595 31.715 309 172 6 104 389 117 409 3.84e-37 140
MsG0280007052.01.T01 MTR_5g088200 41.111 90 46 3 91 180 308 390 2.45e-11 66.2
MsG0280007052.01.T02 MTR_2g019620 93.095 391 25 2 1 389 1 391 0.0 732
MsG0280007052.01.T02 MTR_7g117595 34.921 315 170 7 104 389 117 425 3.16e-47 167
MsG0280007052.01.T02 MTR_4g086860 37.874 301 164 5 100 389 98 386 1.15e-46 165
MsG0280007052.01.T02 MTR_7g117595 43.850 187 96 3 104 283 117 301 1.40e-41 150
MsG0280007052.01.T02 MTR_7g117595 31.715 309 172 6 104 389 117 409 3.84e-37 140
MsG0280007052.01.T02 MTR_5g088200 41.111 90 46 3 91 180 308 390 2.45e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007052.01.T01 AT5G46250 51.944 360 145 8 43 389 56 400 5.33e-111 332
MsG0280007052.01.T01 AT5G46250 54.930 284 111 6 43 324 56 324 4.06e-93 284
MsG0280007052.01.T01 AT5G46250 54.930 284 111 6 43 324 56 324 5.61e-93 283
MsG0280007052.01.T01 AT3G19090 42.051 195 111 1 99 293 142 334 4.16e-43 157
MsG0280007052.01.T01 AT2G43970 35.021 237 131 5 79 297 159 390 6.91e-40 149
MsG0280007052.01.T01 AT3G19090 31.579 342 164 9 99 389 142 464 2.04e-38 144
MsG0280007052.01.T01 AT2G43970 31.356 236 125 5 79 297 159 374 4.00e-29 119
MsG0280007052.01.T01 AT5G21160 49.315 73 35 1 100 172 277 347 3.94e-13 71.6
MsG0280007052.01.T01 AT5G21160 49.315 73 35 1 100 172 277 347 4.40e-13 71.6
MsG0280007052.01.T01 AT5G21160 49.315 73 35 1 100 172 277 347 4.40e-13 71.6
MsG0280007052.01.T01 AT4G32720 27.468 233 116 8 105 307 14 223 2.57e-12 68.6
MsG0280007052.01.T01 AT4G32720 27.468 233 116 8 105 307 14 223 2.72e-12 68.6
MsG0280007052.01.T02 AT5G46250 51.944 360 145 8 43 389 56 400 5.33e-111 332
MsG0280007052.01.T02 AT5G46250 54.930 284 111 6 43 324 56 324 4.06e-93 284
MsG0280007052.01.T02 AT5G46250 54.930 284 111 6 43 324 56 324 5.61e-93 283
MsG0280007052.01.T02 AT3G19090 42.051 195 111 1 99 293 142 334 4.16e-43 157
MsG0280007052.01.T02 AT2G43970 35.021 237 131 5 79 297 159 390 6.91e-40 149
MsG0280007052.01.T02 AT3G19090 31.579 342 164 9 99 389 142 464 2.04e-38 144
MsG0280007052.01.T02 AT2G43970 31.356 236 125 5 79 297 159 374 4.00e-29 119
MsG0280007052.01.T02 AT5G21160 49.315 73 35 1 100 172 277 347 3.94e-13 71.6
MsG0280007052.01.T02 AT5G21160 49.315 73 35 1 100 172 277 347 4.40e-13 71.6
MsG0280007052.01.T02 AT5G21160 49.315 73 35 1 100 172 277 347 4.40e-13 71.6
MsG0280007052.01.T02 AT4G32720 27.468 233 116 8 105 307 14 223 2.57e-12 68.6
MsG0280007052.01.T02 AT4G32720 27.468 233 116 8 105 307 14 223 2.72e-12 68.6

Find 68 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCTTGAGTCGGGGTTTA+AGG 0.158696 2:+9981363 MsG0280007052.01.T01:three_prime_UTR
GAAATCAGAGCATGAATTTC+AGG 0.229374 2:-9976832 None:intergenic
TCCAATGAAACAACGGTTTC+AGG 0.253195 2:-9976961 None:intergenic
GTTGGAGCGGTGGCGGTGGC+TGG 0.289458 2:-9976715 None:intergenic
TTCATCGTCATTGTTTAAAC+TGG 0.304117 2:+9981591 MsG0280007052.01.T01:three_prime_UTR
ATATTCAAATCCTCAAAATA+TGG 0.327927 2:-9981793 None:intergenic
ACATCAACAACGTCAATAAC+TGG 0.359096 2:-9976802 None:intergenic
GCAAGATTGATGCCAGATAA+TGG 0.368868 2:+9981275 MsG0280007052.01.T01:CDS
GTAAAATACAGTCCATTATC+TGG 0.376673 2:-9981287 None:intergenic
TTGCTTGAGTCGGGGTTTAA+GGG 0.392886 2:+9981364 MsG0280007052.01.T01:three_prime_UTR
GCCTGAAACCGTTGTTTCAT+TGG 0.396718 2:+9976960 MsG0280007052.01.T01:CDS
GTCGGGGTTTAAGGGTTTGT+TGG 0.407729 2:+9981372 MsG0280007052.01.T01:three_prime_UTR
CTCAATGGAAACCGTCGAAC+AGG 0.411833 2:+9976684 MsG0280007052.01.T01:exon
GTGGAATCGCCGCCGGCGGT+TGG 0.413996 2:-9976733 None:intergenic
TATGTGTGTTTGCTTGAGTC+GGG 0.419152 2:+9981355 MsG0280007052.01.T01:three_prime_UTR
GCCGGCGGTTGGAGCGGTGG+CGG 0.422816 2:-9976722 None:intergenic
GGTTTAAGGGTTTGTTGGAC+TGG 0.433893 2:+9981377 MsG0280007052.01.T01:three_prime_UTR
TCTGTAGTAAAACTCTACTT+TGG 0.434620 2:-9981631 None:intergenic
TTTGATATTGATTGAAATGA+TGG 0.435471 2:+9981560 MsG0280007052.01.T01:three_prime_UTR
ACCGCCACCGCTCCAACCGC+CGG 0.438937 2:+9976721 MsG0280007052.01.T01:CDS
GAGCGGAGGAGGCGAGGCGG+TGG 0.443328 2:-9976752 None:intergenic
CTATGTGTGTTTGCTTGAGT+CGG 0.443755 2:+9981354 MsG0280007052.01.T01:three_prime_UTR
GGCGGTTGGAGCGGTGGCGG+TGG 0.453662 2:-9976719 None:intergenic
GAGCGGTGGCGGTGGCTGGA+AGG 0.458842 2:-9976711 None:intergenic
AGCAAAACCCGTGTTCCATC+AGG 0.460605 2:-9981214 None:intergenic
TCTACTTTGGAGACGAGTTA+AGG 0.460696 2:-9981618 None:intergenic
TGACCATTCTCTCTCCTCAA+TGG 0.468055 2:+9976669 MsG0280007052.01.T01:exon
CTGTTCGACGGTTTCCATTG+AGG 0.470017 2:-9976683 None:intergenic
ACCGCCTCGCCTCCTCCGCT+CGG 0.470649 2:+9976754 MsG0280007052.01.T01:CDS
TTCAATCAATATCAAACAAG+TGG 0.474912 2:-9981553 None:intergenic
CTTGATGATCAGCGTGATGA+AGG 0.496103 2:+9976919 MsG0280007052.01.T01:CDS
ACAGAATCACCGAGCGGAGG+AGG 0.503428 2:-9976763 None:intergenic
GCCGCCGGCGGTTGGAGCGG+TGG 0.509707 2:-9976725 None:intergenic
CGACTCAAGCAAACACACAT+AGG 0.509935 2:-9981353 None:intergenic
TTTCCATTGAGGAGAGAGAA+TGG 0.513378 2:-9976672 None:intergenic
TGATCAGCGTGATGAAGGTC+AGG 0.513395 2:+9976924 MsG0280007052.01.T01:CDS
ATCGCCGCCGGCGGTTGGAG+CGG 0.517278 2:-9976728 None:intergenic
TGCTACATAGATTCCTCGTA+TGG 0.517319 2:-9981505 None:intergenic
ACAACGTCAATAACTGGATC+GGG 0.520693 2:-9976796 None:intergenic
CAAGCTCAAGATAATTAAGC+AGG 0.524515 2:+9976990 MsG0280007052.01.T01:CDS
GGCGGTGGAATCGCCGCCGG+CGG 0.525366 2:-9976737 None:intergenic
ATCGTCATTGTTTAAACTGG+AGG 0.526836 2:+9981594 MsG0280007052.01.T01:three_prime_UTR
ATCTGGTGAAAGGTAGTGTT+TGG 0.533806 2:+9981416 MsG0280007052.01.T01:three_prime_UTR
ATCACCGAGCGGAGGAGGCG+AGG 0.534053 2:-9976758 None:intergenic
ATATTGATTGAAATGATGGT+TGG 0.534858 2:+9981564 MsG0280007052.01.T01:three_prime_UTR
GCCACCGCTCCAACCGCCGG+CGG 0.538281 2:+9976724 MsG0280007052.01.T01:CDS
CGAGGCGGTGGAATCGCCGC+CGG 0.538341 2:-9976740 None:intergenic
GAGCCATCAAAACCACCTCC+TGG 0.540278 2:+9981181 MsG0280007052.01.T01:CDS
CAATCTTGCTAATTCGATGC+AGG 0.540489 2:-9981261 None:intergenic
TTGTGGCTCAATCTGGTGAA+AGG 0.551608 2:+9981406 MsG0280007052.01.T01:three_prime_UTR
AACAACGTCAATAACTGGAT+CGG 0.559673 2:-9976797 None:intergenic
TAGCAATATTTCTGTTGAAG+TGG 0.573432 2:+9981523 MsG0280007052.01.T01:three_prime_UTR
GACTCAAGCAAACACACATA+GGG 0.586099 2:-9981352 None:intergenic
TGGTGAAAGGTAGTGTTTGG+TGG 0.588883 2:+9981419 MsG0280007052.01.T01:three_prime_UTR
TAATTCGATGCAGGAACAAG+AGG 0.607177 2:-9981252 None:intergenic
TGGAAGGAGAACCTGTTCGA+CGG 0.608516 2:-9976695 None:intergenic
AGCAATATTTCTGTTGAAGT+GGG 0.622830 2:+9981524 MsG0280007052.01.T01:three_prime_UTR
TTGGTAGTCCTCACCATACG+AGG 0.637094 2:+9981492 MsG0280007052.01.T01:three_prime_UTR
GAATAGATGATGTACCTCCA+TGG 0.638936 2:-9981150 None:intergenic
AATTCGATGCAGGAACAAGA+GGG 0.651066 2:-9981251 None:intergenic
CATAGATTCCTCGTATGGTG+AGG 0.655098 2:-9981500 None:intergenic
ACCGAGCGGAGGAGGCGAGG+CGG 0.656376 2:-9976755 None:intergenic
GAGATCATCCAATGAAACAA+CGG 0.668615 2:-9976968 None:intergenic
AGAGCAGAAAAGAAAGAGCG+TGG 0.670989 2:+9976617 MsG0280007052.01.T01:five_prime_UTR
ATGTGTGTTTGCTTGAGTCG+GGG 0.673705 2:+9981356 MsG0280007052.01.T01:three_prime_UTR
TGCATTGTTCCAGGCCATGG+AGG 0.674250 2:+9981136 MsG0280007052.01.T01:intron
ATAACAGAATCACCGAGCGG+AGG 0.681140 2:-9976766 None:intergenic
ATGATAACAGAATCACCGAG+CGG 0.780458 2:-9976769 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAACATTTTTAGATTATT+AGG + Chr2:9981446-9981465 MsG0280007052.01.T01:three_prime_UTR 10.0%
!!! TTTTTAATACCAAATATTAT+CGG + Chr2:9980325-9980344 MsG0280007052.01.T01:intron 10.0%
!! ATAAAGGCTTAATTATAATA+TGG - Chr2:9979930-9979949 None:intergenic 15.0%
!! ATCATTGCTTATATTATAAA+TGG - Chr2:9977997-9978016 None:intergenic 15.0%
!! TCTTCTTATCTATATATATT+CGG + Chr2:9981056-9981075 MsG0280007052.01.T01:intron 15.0%
!!! AATATGATTTTATACTGAAA+GGG - Chr2:9980358-9980377 None:intergenic 15.0%
!!! GAAATATGAAACTTTTTTTT+TGG + Chr2:9981473-9981492 MsG0280007052.01.T01:three_prime_UTR 15.0%
!!! TAATATGATTTTATACTGAA+AGG - Chr2:9980359-9980378 None:intergenic 15.0%
!!! TTTTGTATATTACTTTTTGT+TGG + Chr2:9979584-9979603 MsG0280007052.01.T01:intron 15.0%
!! AAAAAATTGCAAATTGCAAA+TGG - Chr2:9977876-9977895 None:intergenic 20.0%
!! ATATTCAAATCCTCAAAATA+TGG - Chr2:9981796-9981815 None:intergenic 20.0%
!! ATTACAGTATAACAAAATTG+AGG - Chr2:9979565-9979584 None:intergenic 20.0%
!! CTTCTTATCTATATATATTC+GGG + Chr2:9981057-9981076 MsG0280007052.01.T01:intron 20.0%
!! CTTTATTATAACTACAGTTA+GGG + Chr2:9979151-9979170 MsG0280007052.01.T01:intron 20.0%
!! GAACATAATTATTTACAAAG+TGG - Chr2:9979397-9979416 None:intergenic 20.0%
!! GTGAAAAATGCAAAATTATT+AGG - Chr2:9977165-9977184 None:intergenic 20.0%
!! GTTAATAACTAACCATAATA+TGG + Chr2:9978994-9979013 MsG0280007052.01.T01:intron 20.0%
!! TATAATTAAGCCTTTATATC+TGG + Chr2:9979933-9979952 MsG0280007052.01.T01:intron 20.0%
!! TCCAAGTATAACAAATAAAT+TGG + Chr2:9977470-9977489 MsG0280007052.01.T01:intron 20.0%
!! TCTTTATTATAACTACAGTT+AGG + Chr2:9979150-9979169 MsG0280007052.01.T01:intron 20.0%
!! TTCTTATCTATATATATTCG+GGG + Chr2:9981058-9981077 MsG0280007052.01.T01:intron 20.0%
!! TTGACATCATAATAATTGAT+AGG + Chr2:9980443-9980462 MsG0280007052.01.T01:intron 20.0%
!!! ACCAATTTATTTGTTATACT+TGG - Chr2:9977474-9977493 None:intergenic 20.0%
!!! ATACTTATAGTTTTGTAGTT+TGG + Chr2:9980502-9980521 MsG0280007052.01.T01:intron 20.0%
!!! ATCATAAGGTATTTACTTAT+AGG + Chr2:9978622-9978641 MsG0280007052.01.T01:intron 20.0%
!!! ATTAGTGATTTTAATTGAAG+GGG + Chr2:9977931-9977950 MsG0280007052.01.T01:intron 20.0%
!!! GATTAGTGATTTTAATTGAA+GGG + Chr2:9977930-9977949 MsG0280007052.01.T01:intron 20.0%
!!! TGATTAGTGATTTTAATTGA+AGG + Chr2:9977929-9977948 MsG0280007052.01.T01:intron 20.0%
!!! TTTGATATTGATTGAAATGA+TGG + Chr2:9981560-9981579 MsG0280007052.01.T01:three_prime_UTR 20.0%
!!! TTTTTATTTGCCATATTTTG+AGG + Chr2:9981783-9981802 MsG0280007052.01.T01:three_prime_UTR 20.0%
! AAATTGAACTGTAGTTTGAT+AGG + Chr2:9977127-9977146 MsG0280007052.01.T01:intron 25.0%
! AACCAGTTATTAGAATGAAA+AGG - Chr2:9981117-9981136 None:intergenic 25.0%
! AATAACTAACCATAATATGG+AGG + Chr2:9978997-9979016 MsG0280007052.01.T01:intron 25.0%
! ACCAGTTATTAGAATGAAAA+GGG - Chr2:9981116-9981135 None:intergenic 25.0%
! ACTTATCTCAACAATAACTT+AGG - Chr2:9977234-9977253 None:intergenic 25.0%
! AGCATATTTATCAATGCTAT+TGG + Chr2:9977842-9977861 MsG0280007052.01.T01:intron 25.0%
! AGTTTATTAAGTTCTTGATG+AGG + Chr2:9981666-9981685 MsG0280007052.01.T01:intron 25.0%
! ATATCCATATCAAGTGAAAA+AGG - Chr2:9979112-9979131 None:intergenic 25.0%
! ATTACTAGGAATTACATGAT+AGG - Chr2:9978336-9978355 None:intergenic 25.0%
! CAACGCATAATTGAAAATAA+CGG - Chr2:9980851-9980870 None:intergenic 25.0%
! CAATGAAGTTAAAGATCATA+AGG + Chr2:9978608-9978627 MsG0280007052.01.T01:CDS 25.0%
! CTTAATTGAAAGGTAAATGT+TGG + Chr2:9977569-9977588 MsG0280007052.01.T01:intron 25.0%
! CTTATCTCAACAATAACTTA+GGG - Chr2:9977233-9977252 None:intergenic 25.0%
! GCATATTTATCAATGCTATT+GGG + Chr2:9977843-9977862 MsG0280007052.01.T01:intron 25.0%
! TAAAACCTAGTAACTGTAAT+TGG + Chr2:9977013-9977032 MsG0280007052.01.T01:intron 25.0%
! TACTTCATTATATGAAAACC+TGG + Chr2:9978080-9978099 MsG0280007052.01.T01:intron 25.0%
! TATGACATAAGGAATAATCT+GGG + Chr2:9977523-9977542 MsG0280007052.01.T01:intron 25.0%
! TGGTATTAAAAATACTAGCT+AGG - Chr2:9980317-9980336 None:intergenic 25.0%
! TGTAGTAGATCTTAATTGAA+AGG + Chr2:9977559-9977578 MsG0280007052.01.T01:intron 25.0%
! TGTTAAATAATGAACAAGAC+TGG + Chr2:9980000-9980019 MsG0280007052.01.T01:CDS 25.0%
! TTAAGAAAAATTCCTCTCTT+GGG + Chr2:9978527-9978546 MsG0280007052.01.T01:intron 25.0%
! TTATGACATAAGGAATAATC+TGG + Chr2:9977522-9977541 MsG0280007052.01.T01:intron 25.0%
! TTCAATCAATATCAAACAAG+TGG - Chr2:9981556-9981575 None:intergenic 25.0%
!! AAATCGTTAGATTTTACTAG+TGG + Chr2:9981747-9981766 MsG0280007052.01.T01:three_prime_UTR 25.0%
!! AGTGACGTACAATTTTAAAT+TGG + Chr2:9981325-9981344 MsG0280007052.01.T01:three_prime_UTR 25.0%
!! ATATTGATTGAAATGATGGT+TGG + Chr2:9981564-9981583 MsG0280007052.01.T01:three_prime_UTR 25.0%
!! GACTTTAGAGATTCATTAAA+TGG - Chr2:9979217-9979236 None:intergenic 25.0%
!! GTGACGTACAATTTTAAATT+GGG + Chr2:9981326-9981345 MsG0280007052.01.T01:three_prime_UTR 25.0%
!! TGACGTACAATTTTAAATTG+GGG + Chr2:9981327-9981346 MsG0280007052.01.T01:three_prime_UTR 25.0%
!! TGTCAAAACATCTTGATAAT+TGG - Chr2:9980429-9980448 None:intergenic 25.0%
!! TTGATAGTAGTTTATGTTGA+TGG + Chr2:9980102-9980121 MsG0280007052.01.T01:intron 25.0%
!! TTGCATTTTTCACATTTCTA+GGG + Chr2:9977172-9977191 MsG0280007052.01.T01:intron 25.0%
!! TTTGCATTTTTCACATTTCT+AGG + Chr2:9977171-9977190 MsG0280007052.01.T01:intron 25.0%
!!! ACATTTTTAGATTATTAGGC+TGG + Chr2:9981450-9981469 MsG0280007052.01.T01:three_prime_UTR 25.0%
!!! AGTTTTGTAGTTTGGATTTA+TGG + Chr2:9980510-9980529 MsG0280007052.01.T01:intron 25.0%
!!! ATTGAAGAGCATTTTAAATG+TGG - Chr2:9979720-9979739 None:intergenic 25.0%
!!! CATTTTTAGATTATTAGGCT+GGG + Chr2:9981451-9981470 MsG0280007052.01.T01:three_prime_UTR 25.0%
!!! CTTTAGAATCTCAAATAAAC+AGG - Chr2:9980764-9980783 None:intergenic 25.0%
!!! GTTATACTAAGTCTTATTCT+TGG + Chr2:9978674-9978693 MsG0280007052.01.T01:intron 25.0%
!!! TGCATTGACTCAATTTTTTA+GGG + Chr2:9979317-9979336 MsG0280007052.01.T01:intron 25.0%
!!! TTGCATTGACTCAATTTTTT+AGG + Chr2:9979316-9979335 MsG0280007052.01.T01:intron 25.0%
!!! TTTACCTTTTTCACTTGATA+TGG + Chr2:9979105-9979124 MsG0280007052.01.T01:intron 25.0%
AAAGCTAAAAAGTTAACCCA+AGG - Chr2:9979691-9979710 None:intergenic 30.0%
AACATTCGATATGGAGATAA+AGG - Chr2:9979804-9979823 None:intergenic 30.0%
AACCATTTGTGTGTTTGATT+GGG + Chr2:9979474-9979493 MsG0280007052.01.T01:intron 30.0%
AAGCCTGCATAATCAATTTA+TGG + Chr2:9980781-9980800 MsG0280007052.01.T01:intron 30.0%
AATTAAGAGCCTCCATATTA+TGG - Chr2:9979009-9979028 None:intergenic 30.0%
ACAAAAAAAACAACCTTCGA+AGG + Chr2:9980152-9980171 MsG0280007052.01.T01:CDS 30.0%
ACAGTATAACAAAATTGAGG+TGG - Chr2:9979562-9979581 None:intergenic 30.0%
AGCAAACAATCCAGATATAA+AGG - Chr2:9979946-9979965 None:intergenic 30.0%
ATAAGCAAAAACTCATAGAC+CGG - Chr2:9980717-9980736 None:intergenic 30.0%
ATCAAGCAAGACAAGTTTAT+TGG + Chr2:9978947-9978966 MsG0280007052.01.T01:CDS 30.0%
ATCAAGTGAAAAAGGTAAAG+TGG - Chr2:9979104-9979123 None:intergenic 30.0%
ATTATGCATTGTGCTGTAAT+TGG + Chr2:9977411-9977430 MsG0280007052.01.T01:intron 30.0%
CAAAAAAAACAACCTTCGAA+GGG + Chr2:9980153-9980172 MsG0280007052.01.T01:CDS 30.0%
CATCTGTTAAAGTTCATGAT+AGG + Chr2:9977901-9977920 MsG0280007052.01.T01:intron 30.0%
CATTACATGTTAACAGAACA+AGG - Chr2:9978482-9978501 None:intergenic 30.0%
CTGGAAAAATTGATGAGTTA+AGG - Chr2:9978799-9978818 None:intergenic 30.0%
CTTAAGAAAAATTCCTCTCT+TGG + Chr2:9978526-9978545 MsG0280007052.01.T01:intron 30.0%
GATTAGATATTCCTCTTTCT+AGG + Chr2:9977591-9977610 MsG0280007052.01.T01:intron 30.0%
GGTAATGAACCGATAATATT+TGG - Chr2:9980337-9980356 None:intergenic 30.0%
GGTATTTACTTATAGGAACA+TGG + Chr2:9978629-9978648 MsG0280007052.01.T01:intron 30.0%
GTAAAATACAGTCCATTATC+TGG - Chr2:9981290-9981309 None:intergenic 30.0%
GTGATTCAAATCCTCAAAAA+TGG - Chr2:9979045-9979064 None:intergenic 30.0%
GTTAAAGAGATACTTTCCTT+GGG + Chr2:9979672-9979691 MsG0280007052.01.T01:intron 30.0%
TAACCATTTGTGTGTTTGAT+TGG + Chr2:9979473-9979492 MsG0280007052.01.T01:intron 30.0%
TATAACAAAATTGAGGTGGA+AGG - Chr2:9979558-9979577 None:intergenic 30.0%
TATCAGTACTTCACAACAAT+GGG - Chr2:9977662-9977681 None:intergenic 30.0%
TATGGAGATAAAGGAATCAA+CGG - Chr2:9979795-9979814 None:intergenic 30.0%
TATTGCTGAGTAGAATTTGT+TGG + Chr2:9977495-9977514 MsG0280007052.01.T01:intron 30.0%
TCAAATAAACAGGTGAATAC+TGG - Chr2:9980754-9980773 None:intergenic 30.0%
TCTGTAGTAAAACTCTACTT+TGG - Chr2:9981634-9981653 None:intergenic 30.0%
TGTGAAAACAACATTCGATA+TGG - Chr2:9979813-9979832 None:intergenic 30.0%
TGTTAAAGAGATACTTTCCT+TGG + Chr2:9979671-9979690 MsG0280007052.01.T01:intron 30.0%
TGTTGGGTATTTATGACATA+AGG + Chr2:9977512-9977531 MsG0280007052.01.T01:intron 30.0%
TTAACTTCATTGAAACGAAG+TGG - Chr2:9978600-9978619 None:intergenic 30.0%
TTATCAGTACTTCACAACAA+TGG - Chr2:9977663-9977682 None:intergenic 30.0%
TTATGCATTGTGCTGTAATT+GGG + Chr2:9977412-9977431 MsG0280007052.01.T01:intron 30.0%
TTCATCGTCATTGTTTAAAC+TGG + Chr2:9981591-9981610 MsG0280007052.01.T01:three_prime_UTR 30.0%
! AAGCAACACATGTTTTACTT+TGG + Chr2:9980807-9980826 MsG0280007052.01.T01:intron 30.0%
! AATTCTGAGAAAAATAGCTC+TGG + Chr2:9980180-9980199 MsG0280007052.01.T01:CDS 30.0%
! AGACAAGTTTATTGGTAGTA+AGG + Chr2:9978955-9978974 MsG0280007052.01.T01:CDS 30.0%
! AGCAACACATGTTTTACTTT+GGG + Chr2:9980808-9980827 MsG0280007052.01.T01:intron 30.0%
! AGCAATATTTCTGTTGAAGT+GGG + Chr2:9981524-9981543 MsG0280007052.01.T01:three_prime_UTR 30.0%
! AGTTTTACTACAGATGAACA+AGG + Chr2:9981640-9981659 MsG0280007052.01.T01:three_prime_UTR 30.0%
! ATTGCTGAGTAGAATTTGTT+GGG + Chr2:9977496-9977515 MsG0280007052.01.T01:intron 30.0%
! CAAGAGAGGAATTTTTCTTA+AGG - Chr2:9978528-9978547 None:intergenic 30.0%
! CTGTTTGTGTTGAATTTTGA+AGG + Chr2:9977261-9977280 MsG0280007052.01.T01:intron 30.0%
! GACGTACAATTTTAAATTGG+GGG + Chr2:9981328-9981347 MsG0280007052.01.T01:three_prime_UTR 30.0%
! TAGCAATATTTCTGTTGAAG+TGG + Chr2:9981523-9981542 MsG0280007052.01.T01:three_prime_UTR 30.0%
! TCCCTTTTCATTCTAATAAC+TGG + Chr2:9981112-9981131 MsG0280007052.01.T01:intron 30.0%
! TGAAAACCTGGATGAAATTT+TGG + Chr2:9978092-9978111 MsG0280007052.01.T01:intron 30.0%
!! ACATTTCTAGGGTTTATGTT+TGG + Chr2:9977183-9977202 MsG0280007052.01.T01:intron 30.0%
!! CGTTATTTTCAATTATGCGT+TGG + Chr2:9980849-9980868 MsG0280007052.01.T01:intron 30.0%
!! GAAAGTATCTCTTTAACATG+AGG - Chr2:9979669-9979688 None:intergenic 30.0%
!! TCATTGCATTTCCATTTTTG+AGG + Chr2:9979031-9979050 MsG0280007052.01.T01:intron 30.0%
!! TGTTCTAGAGATGTTCATTT+GGG + Chr2:9977439-9977458 MsG0280007052.01.T01:intron 30.0%
!! TTGTTCTAGAGATGTTCATT+TGG + Chr2:9977438-9977457 MsG0280007052.01.T01:intron 30.0%
!! TTTGTGTTGAATTTTGAAGG+TGG + Chr2:9977264-9977283 MsG0280007052.01.T01:intron 30.0%
!!! ACTCTTTTTTCTGTTTCAGT+TGG + Chr2:9979449-9979468 MsG0280007052.01.T01:intron 30.0%
!!! CAGTTTGTAGTTGTTTTAGA+CGG + Chr2:9981702-9981721 MsG0280007052.01.T01:three_prime_UTR 30.0%
!!! GGTTAACTTTTTAGCTTTTC+TGG + Chr2:9979693-9979712 MsG0280007052.01.T01:intron 30.0%
AAACGCCAATTACAGTTACT+AGG - Chr2:9977021-9977040 None:intergenic 35.0%
AAAGATGCAATTGCTGGTAT+AGG - Chr2:9978374-9978393 None:intergenic 35.0%
AACAACGTCAATAACTGGAT+CGG - Chr2:9976800-9976819 None:intergenic 35.0%
AAGTTCAAGAACCTAGAAAG+AGG - Chr2:9977605-9977624 None:intergenic 35.0%
AATGAACAAGACTGGAGAAA+TGG + Chr2:9980008-9980027 MsG0280007052.01.T01:CDS 35.0%
ACAAGACATAAACAACGCTA+TGG - Chr2:9978301-9978320 None:intergenic 35.0%
ACATCAACAACGTCAATAAC+TGG - Chr2:9976805-9976824 None:intergenic 35.0%
ACATGTTAACAGAACAAGGA+AGG - Chr2:9978478-9978497 None:intergenic 35.0%
ACTCAGCATATACTTATCAG+TGG - Chr2:9977317-9977336 None:intergenic 35.0%
ACTGCATGAACAGAATTACT+AGG - Chr2:9978350-9978369 None:intergenic 35.0%
AGTGGCCATTTACTTAGTTT+AGG - Chr2:9979379-9979398 None:intergenic 35.0%
AGTTACTGAGTTACACTTAC+GGG + Chr2:9977769-9977788 MsG0280007052.01.T01:intron 35.0%
ATCGTCATTGTTTAAACTGG+AGG + Chr2:9981594-9981613 MsG0280007052.01.T01:three_prime_UTR 35.0%
ATTCTGCCAAAATTTCATCC+AGG - Chr2:9978101-9978120 None:intergenic 35.0%
ATTTGTCAAAGGATAAAGGC+GGG + Chr2:9980969-9980988 MsG0280007052.01.T01:CDS 35.0%
CAAAAAGTTGCACAAAAGAC+AGG - Chr2:9980671-9980690 None:intergenic 35.0%
CAAAAATACCGTGCTACAAA+TGG + Chr2:9981025-9981044 MsG0280007052.01.T01:CDS 35.0%
CAACAAAGACAAATGTAAGC+TGG - Chr2:9980922-9980941 None:intergenic 35.0%
CAAGCTCAAGATAATTAAGC+AGG + Chr2:9976990-9977009 MsG0280007052.01.T01:CDS 35.0%
CATCTTACTTTCCAGCTATT+TGG - Chr2:9978772-9978791 None:intergenic 35.0%
CATTTGTCAAAGGATAAAGG+CGG + Chr2:9980968-9980987 MsG0280007052.01.T01:CDS 35.0%
CCACCATAAATTGATTATGC+AGG - Chr2:9980787-9980806 None:intergenic 35.0%
CCTGCATAATCAATTTATGG+TGG + Chr2:9980784-9980803 MsG0280007052.01.T01:intron 35.0%
CGAGAAAAGAGAAAAGACAA+CGG - Chr2:9980073-9980092 None:intergenic 35.0%
CGCTACAATTATATCACTTG+GGG + Chr2:9980466-9980485 MsG0280007052.01.T01:intron 35.0%
CTCAGCATATACTTATCAGT+GGG - Chr2:9977316-9977335 None:intergenic 35.0%
GAAATCAGAGCATGAATTTC+AGG - Chr2:9976835-9976854 None:intergenic 35.0%
GAGATCATCCAATGAAACAA+CGG - Chr2:9976971-9976990 None:intergenic 35.0%
GAGCATTTGTCAAAGGATAA+AGG + Chr2:9980965-9980984 MsG0280007052.01.T01:CDS 35.0%
GAGTTACTGAGTTACACTTA+CGG + Chr2:9977768-9977787 MsG0280007052.01.T01:intron 35.0%
GATATGATTGTGTGCTTAGT+TGG + Chr2:9979127-9979146 MsG0280007052.01.T01:intron 35.0%
GCGCTACAATTATATCACTT+GGG + Chr2:9980465-9980484 MsG0280007052.01.T01:intron 35.0%
GGAAAAAATCTCTCACAAAC+AGG + Chr2:9980870-9980889 MsG0280007052.01.T01:intron 35.0%
GTGCAGCAGCAATAAATAAA+TGG - Chr2:9978424-9978443 None:intergenic 35.0%
GTGGCCATTTACTTAGTTTA+GGG - Chr2:9979378-9979397 None:intergenic 35.0%
TACAGAGGGGTAAAATAGAA+TGG - Chr2:9979836-9979855 None:intergenic 35.0%
TGATAAGTATATGCTGAGTC+TGG + Chr2:9977318-9977337 MsG0280007052.01.T01:CDS 35.0%
TGTGGAATATGAGACTATTG+AGG + Chr2:9979868-9979887 MsG0280007052.01.T01:CDS 35.0%
TTCCTAAAAGATGCAATTGC+TGG - Chr2:9978380-9978399 None:intergenic 35.0%
TTCTTAAGGACTAGAAGTAG+AGG - Chr2:9978514-9978533 None:intergenic 35.0%
TTGCTTGATATGTTTAGCAG+AGG - Chr2:9978936-9978955 None:intergenic 35.0%
! GCACATATGTAATTTGTCAC+TGG - Chr2:9977727-9977746 None:intergenic 35.0%
! GTAAATTTTGTGGCTCAATC+TGG + Chr2:9981399-9981418 MsG0280007052.01.T01:three_prime_UTR 35.0%
! TACCAGCAATTGCATCTTTT+AGG + Chr2:9978375-9978394 MsG0280007052.01.T01:CDS 35.0%
! TACTTTGGGAATAAGTGCAT+TGG + Chr2:9980822-9980841 MsG0280007052.01.T01:intron 35.0%
! TCTCCAGTTATGTACTGTTT+TGG + Chr2:9978697-9978716 MsG0280007052.01.T01:intron 35.0%
!! ATGGTCATTTTATGCTTCAG+GGG + Chr2:9980121-9980140 MsG0280007052.01.T01:intron 35.0%
!! CAACTTTTTGTTATCCGATC+TGG + Chr2:9980681-9980700 MsG0280007052.01.T01:intron 35.0%
!! GATGGTCATTTTATGCTTCA+GGG + Chr2:9980120-9980139 MsG0280007052.01.T01:intron 35.0%
!! TGATGGTCATTTTATGCTTC+AGG + Chr2:9980119-9980138 MsG0280007052.01.T01:intron 35.0%
!!! TGTTGGACTGGTAAATTTTG+TGG + Chr2:9981389-9981408 MsG0280007052.01.T01:three_prime_UTR 35.0%
AAAAATGCCTGATGGAACAC+GGG + Chr2:9981207-9981226 MsG0280007052.01.T01:CDS 40.0%
AATTCGATGCAGGAACAAGA+GGG - Chr2:9981254-9981273 None:intergenic 40.0%
ACAAAGTTGCATTGTCAGCA+TGG + Chr2:9977682-9977701 MsG0280007052.01.T01:intron 40.0%
ACAACGTCAATAACTGGATC+GGG - Chr2:9976799-9976818 None:intergenic 40.0%
ACATCTTAGTTACACGAGAC+TGG - Chr2:9978818-9978837 None:intergenic 40.0%
ACCATTCAAGGGAGAACATT+CGG + Chr2:9978738-9978757 MsG0280007052.01.T01:CDS 40.0%
ACGGCAAAGAAGAATATAGC+AGG - Chr2:9979776-9979795 None:intergenic 40.0%
ATAACTGGTTGCATTGTTCC+AGG + Chr2:9981127-9981146 MsG0280007052.01.T01:intron 40.0%
ATACCGTGCTACAAATGGAA+TGG + Chr2:9981030-9981049 MsG0280007052.01.T01:CDS 40.0%
ATATGCTGAGTCTGGTCAAA+CGG + Chr2:9977326-9977345 MsG0280007052.01.T01:CDS 40.0%
ATCTGAGAAAACTGGAGATG+AGG + Chr2:9980209-9980228 MsG0280007052.01.T01:CDS 40.0%
ATCTGGTGAAAGGTAGTGTT+TGG + Chr2:9981416-9981435 MsG0280007052.01.T01:three_prime_UTR 40.0%
ATGATAACAGAATCACCGAG+CGG - Chr2:9976772-9976791 None:intergenic 40.0%
ATTGCCACCTAAATCAGCAT+TGG - Chr2:9979981-9980000 None:intergenic 40.0%
ATTTATTGCTGCTGCACTGA+TGG + Chr2:9978427-9978446 MsG0280007052.01.T01:CDS 40.0%
CAAAAATGCCTGATGGAACA+CGG + Chr2:9981206-9981225 MsG0280007052.01.T01:CDS 40.0%
CAATCTTGCTAATTCGATGC+AGG - Chr2:9981264-9981283 None:intergenic 40.0%
CACCCAATCAAACACACAAA+TGG - Chr2:9979479-9979498 None:intergenic 40.0%
CCAGCCCTAAACTAAGTAAA+TGG + Chr2:9979371-9979390 MsG0280007052.01.T01:intron 40.0%
CGGCAAATATTCCAAATAGC+TGG + Chr2:9978758-9978777 MsG0280007052.01.T01:CDS 40.0%
CTATGTGTGTTTGCTTGAGT+CGG + Chr2:9981354-9981373 MsG0280007052.01.T01:three_prime_UTR 40.0%
CTGCCAAAACAGTACATAAC+TGG - Chr2:9978703-9978722 None:intergenic 40.0%
CTTACCTGTCATTACAGGAT+GGG + Chr2:9980942-9980961 MsG0280007052.01.T01:intron 40.0%
GAATAGATGATGTACCTCCA+TGG - Chr2:9981153-9981172 None:intergenic 40.0%
GACTCAAGCAAACACACATA+GGG - Chr2:9981355-9981374 None:intergenic 40.0%
GCAAGATTGATGCCAGATAA+TGG + Chr2:9981275-9981294 MsG0280007052.01.T01:CDS 40.0%
GGCGCTACAATTATATCACT+TGG + Chr2:9980464-9980483 MsG0280007052.01.T01:intron 40.0%
GTTACTGAGTTACACTTACG+GGG + Chr2:9977770-9977789 MsG0280007052.01.T01:intron 40.0%
TAATTCGATGCAGGAACAAG+AGG - Chr2:9981255-9981274 None:intergenic 40.0%
TAATTGAAGGGGTTCTTCGA+TGG + Chr2:9977942-9977961 MsG0280007052.01.T01:intron 40.0%
TACCCATTCCATTTGTAGCA+CGG - Chr2:9981036-9981055 None:intergenic 40.0%
TACCGTGCTACAAATGGAAT+GGG + Chr2:9981031-9981050 MsG0280007052.01.T01:CDS 40.0%
TATGTGTGTTTGCTTGAGTC+GGG + Chr2:9981355-9981374 MsG0280007052.01.T01:three_prime_UTR 40.0%
TCAGAATTAGATCCCTTCGA+AGG - Chr2:9980168-9980187 None:intergenic 40.0%
TCCAATGAAACAACGGTTTC+AGG - Chr2:9976964-9976983 None:intergenic 40.0%
TGCTACATAGATTCCTCGTA+TGG - Chr2:9981508-9981527 None:intergenic 40.0%
TGGATTGTTTGCTTAGTCTG+TGG + Chr2:9979953-9979972 MsG0280007052.01.T01:intron 40.0%
TGTAGGTTGTTAGTGGTGAT+GGG + Chr2:9978553-9978572 MsG0280007052.01.T01:intron 40.0%
TTACCTGTCATTACAGGATG+GGG + Chr2:9980943-9980962 MsG0280007052.01.T01:intron 40.0%
TTACTGAGTTACACTTACGG+GGG + Chr2:9977771-9977790 MsG0280007052.01.T01:intron 40.0%
TTTCCATTGAGGAGAGAGAA+TGG - Chr2:9976675-9976694 None:intergenic 40.0%
! ATCTTGATAATTGGCACGCT+TGG - Chr2:9980420-9980439 None:intergenic 40.0%
! CCATTTACTTAGTTTAGGGC+TGG - Chr2:9979374-9979393 None:intergenic 40.0%
! CTCCAGTTTTCTCAGATACA+TGG - Chr2:9980206-9980225 None:intergenic 40.0%
! CTGAGAAAGCAACTTTTGAC+TGG - Chr2:9979179-9979198 None:intergenic 40.0%
! CTTTAACATGAGGCATCTCA+TGG - Chr2:9979659-9979678 None:intergenic 40.0%
! TCTACTTTGGAGACGAGTTA+AGG - Chr2:9981621-9981640 None:intergenic 40.0%
! TGTTGCTTACCTGTCATTAC+AGG + Chr2:9980937-9980956 MsG0280007052.01.T01:intron 40.0%
! TTTGTTGGTGAAGTCATCTG+CGG + Chr2:9979599-9979618 MsG0280007052.01.T01:intron 40.0%
AAACGGAACAAGGAAGGGTT+TGG + Chr2:9977343-9977362 MsG0280007052.01.T01:CDS 45.0%
AAGACTGGAGAAATGGCATG+CGG + Chr2:9980015-9980034 MsG0280007052.01.T01:CDS 45.0%
ACTGGAGATGAGGAGAATCA+TGG + Chr2:9980219-9980238 MsG0280007052.01.T01:CDS 45.0%
AGAGCAGAAAAGAAAGAGCG+TGG + Chr2:9976617-9976636 MsG0280007052.01.T01:five_prime_UTR 45.0%
AGCAGAACGCAGGTCATTTA+TGG - Chr2:9978909-9978928 None:intergenic 45.0%
ATGTGTGTTTGCTTGAGTCG+GGG + Chr2:9981356-9981375 MsG0280007052.01.T01:three_prime_UTR 45.0%
ATTCCTCTCTTGGGAACTGT+AGG + Chr2:9978536-9978555 MsG0280007052.01.T01:intron 45.0%
ATTTGCCAGAGGACCATTCA+AGG + Chr2:9978726-9978745 MsG0280007052.01.T01:CDS 45.0%
CATAGATTCCTCGTATGGTG+AGG - Chr2:9981503-9981522 None:intergenic 45.0%
CCTTGTCCATGGGTAAACAA+GGG - Chr2:9979278-9979297 None:intergenic 45.0%
CGACTCAAGCAAACACACAT+AGG - Chr2:9981356-9981375 None:intergenic 45.0%
CGGGAACATTAGTAGTACTG+TGG + Chr2:9979619-9979638 MsG0280007052.01.T01:intron 45.0%
CTGCAGCTTGAGCTGTATAT+AGG + Chr2:9979515-9979534 MsG0280007052.01.T01:intron 45.0%
CTGTAGGTTGTTAGTGGTGA+TGG + Chr2:9978552-9978571 MsG0280007052.01.T01:intron 45.0%
CTTGTCCATGGGTAAACAAG+GGG - Chr2:9979277-9979296 None:intergenic 45.0%
CTTGTTTACCCATGGACAAG+GGG + Chr2:9979277-9979296 MsG0280007052.01.T01:intron 45.0%
GAAATACACACCTCTACCAC+AGG - Chr2:9980270-9980289 None:intergenic 45.0%
GCTTACCTGTCATTACAGGA+TGG + Chr2:9980941-9980960 MsG0280007052.01.T01:intron 45.0%
GGCCATGTATCTGAGAAAAC+TGG + Chr2:9980201-9980220 MsG0280007052.01.T01:CDS 45.0%
GGTTAAATTCCTCAGTCGGA+TGG + Chr2:9980037-9980056 MsG0280007052.01.T01:CDS 45.0%
GTATCGTGAAGATATGCCTG+TGG + Chr2:9980251-9980270 MsG0280007052.01.T01:CDS 45.0%
GTTACACTTACGGGGGATAA+TGG + Chr2:9977778-9977797 MsG0280007052.01.T01:intron 45.0%
TAAATTCCTCAGTCGGATGG+CGG + Chr2:9980040-9980059 MsG0280007052.01.T01:CDS 45.0%
TCTGTAGTTGCATGCTCTTG+TGG + Chr2:9979850-9979869 MsG0280007052.01.T01:intron 45.0%
TGAAGATATGCCTGTGGTAG+AGG + Chr2:9980257-9980276 MsG0280007052.01.T01:CDS 45.0%
TGACCATTCTCTCTCCTCAA+TGG + Chr2:9976669-9976688 MsG0280007052.01.T01:exon 45.0%
TGGGAACTGTAGGTTGTTAG+TGG + Chr2:9978546-9978565 MsG0280007052.01.T01:intron 45.0%
TGGTCAAACGGAACAAGGAA+GGG + Chr2:9977338-9977357 MsG0280007052.01.T01:CDS 45.0%
TGGTGAAAGGTAGTGTTTGG+TGG + Chr2:9981419-9981438 MsG0280007052.01.T01:three_prime_UTR 45.0%
TTCATTCACCCCTTGTCCAT+GGG - Chr2:9979288-9979307 None:intergenic 45.0%
TTGCTTGAGTCGGGGTTTAA+GGG + Chr2:9981364-9981383 MsG0280007052.01.T01:three_prime_UTR 45.0%
TTGTGGCTCAATCTGGTGAA+AGG + Chr2:9981406-9981425 MsG0280007052.01.T01:three_prime_UTR 45.0%
TTTCATTCACCCCTTGTCCA+TGG - Chr2:9979289-9979308 None:intergenic 45.0%
TTTGCCAGAGGACCATTCAA+GGG + Chr2:9978727-9978746 MsG0280007052.01.T01:CDS 45.0%
TTTGCTTGAGTCGGGGTTTA+AGG + Chr2:9981363-9981382 MsG0280007052.01.T01:three_prime_UTR 45.0%
TTTGGCAGAGAATTTGCCAG+AGG + Chr2:9978715-9978734 MsG0280007052.01.T01:CDS 45.0%
! AAGAGCATGCAACTACAGAG+GGG - Chr2:9979849-9979868 None:intergenic 45.0%
! ACAAGAGCATGCAACTACAG+AGG - Chr2:9979851-9979870 None:intergenic 45.0%
! CAAGAGCATGCAACTACAGA+GGG - Chr2:9979850-9979869 None:intergenic 45.0%
! CCTTGTTTACCCATGGACAA+GGG + Chr2:9979276-9979295 MsG0280007052.01.T01:intron 45.0%
! CGTGTTCCATCAGGCATTTT+TGG - Chr2:9981208-9981227 None:intergenic 45.0%
! CTTGATGATCAGCGTGATGA+AGG + Chr2:9976919-9976938 MsG0280007052.01.T01:CDS 45.0%
! GCCTGAAACCGTTGTTTCAT+TGG + Chr2:9976960-9976979 MsG0280007052.01.T01:CDS 45.0%
! TGCGGGTTAAATTCCTCAGT+CGG + Chr2:9980033-9980052 MsG0280007052.01.T01:CDS 45.0%
! TTGTTGGTGAAGTCATCTGC+GGG + Chr2:9979600-9979619 MsG0280007052.01.T01:intron 45.0%
!! GGTTTAAGGGTTTGTTGGAC+TGG + Chr2:9981377-9981396 MsG0280007052.01.T01:three_prime_UTR 45.0%
!! TGGAACACGGGTTTTGCTAT+CGG + Chr2:9981219-9981238 MsG0280007052.01.T01:CDS 45.0%
!! TGTGGTGCCAATGCTGATTT+AGG + Chr2:9979971-9979990 MsG0280007052.01.T01:intron 45.0%
!! TGTTAGTGGTGATGGGAAGA+GGG + Chr2:9978560-9978579 MsG0280007052.01.T01:CDS 45.0%
!! TTCTGAAGCTACGACAGACA+AGG - Chr2:9980647-9980666 None:intergenic 45.0%
!! TTGTTAGTGGTGATGGGAAG+AGG + Chr2:9978559-9978578 MsG0280007052.01.T01:CDS 45.0%
AGACTGGAGAAATGGCATGC+GGG + Chr2:9980016-9980035 MsG0280007052.01.T01:CDS 50.0%
AGCAAAACCCGTGTTCCATC+AGG - Chr2:9981217-9981236 None:intergenic 50.0%
ATAACAGAATCACCGAGCGG+AGG - Chr2:9976769-9976788 None:intergenic 50.0%
CAACCTACAGTTCCCAAGAG+AGG - Chr2:9978542-9978561 None:intergenic 50.0%
CACGCTTGGTCACAAGAAAC+TGG - Chr2:9980406-9980425 None:intergenic 50.0%
CCCTTGTCCATGGGTAAACA+AGG - Chr2:9979279-9979298 None:intergenic 50.0%
CCGATCTGGATCTTGAAGTC+CGG + Chr2:9980695-9980714 MsG0280007052.01.T01:intron 50.0%
CCGGACTTCAAGATCCAGAT+CGG - Chr2:9980698-9980717 None:intergenic 50.0%
CCTGGACCAAAAATGCCTGA+TGG + Chr2:9981199-9981218 MsG0280007052.01.T01:CDS 50.0%
CTCAATGGAAACCGTCGAAC+AGG + Chr2:9976684-9976703 MsG0280007052.01.T01:exon 50.0%
CTGGTCAAACGGAACAAGGA+AGG + Chr2:9977337-9977356 MsG0280007052.01.T01:CDS 50.0%
CTGTTCGACGGTTTCCATTG+AGG - Chr2:9976686-9976705 None:intergenic 50.0%
GAGTCTGGTCAAACGGAACA+AGG + Chr2:9977333-9977352 MsG0280007052.01.T01:CDS 50.0%
GCCGAATGTTCTCCCTTGAA+TGG - Chr2:9978742-9978761 None:intergenic 50.0%
GGGCAGAGGAACTCTAAACA+AGG + Chr2:9980989-9981008 MsG0280007052.01.T01:CDS 50.0%
GTCGGGGTTTAAGGGTTTGT+TGG + Chr2:9981372-9981391 MsG0280007052.01.T01:three_prime_UTR 50.0%
TGATCAGCGTGATGAAGGTC+AGG + Chr2:9976924-9976943 MsG0280007052.01.T01:CDS 50.0%
TGGAAGGAGAACCTGTTCGA+CGG - Chr2:9976698-9976717 None:intergenic 50.0%
TTCTCCCTTGAATGGTCCTC+TGG - Chr2:9978734-9978753 None:intergenic 50.0%
! CCCTTGTTTACCCATGGACA+AGG + Chr2:9979275-9979294 MsG0280007052.01.T01:intron 50.0%
! GTCTTCCCCTTGTTTACCCA+TGG + Chr2:9979269-9979288 MsG0280007052.01.T01:intron 50.0%
! GTGATGGGAAGAGGGTTAAG+CGG + Chr2:9978568-9978587 MsG0280007052.01.T01:CDS 50.0%
! TTGGTAGTCCTCACCATACG+AGG + Chr2:9981492-9981511 MsG0280007052.01.T01:three_prime_UTR 50.0%
!! GGATGGGGAGCATTTGTCAA+AGG + Chr2:9980958-9980977 MsG0280007052.01.T01:intron 50.0%
!! GGTGCCAATGCTGATTTAGG+TGG + Chr2:9979974-9979993 MsG0280007052.01.T01:intron 50.0%
!!! AGGAGGTGGTTTTGATGGCT+CGG - Chr2:9981182-9981201 None:intergenic 50.0%
!!! CCATCAGGCATTTTTGGTCC+AGG - Chr2:9981202-9981221 None:intergenic 50.0%
!!! TCAGGCATTTTTGGTCCAGG+AGG - Chr2:9981199-9981218 None:intergenic 50.0%
AACTAACCGCCATCCGACTG+AGG - Chr2:9980049-9980068 None:intergenic 55.0%
CAAAGGATAAAGGCGGGCAG+AGG + Chr2:9980975-9980994 MsG0280007052.01.T01:CDS 55.0%
GAGCCATCAAAACCACCTCC+TGG + Chr2:9981181-9981200 MsG0280007052.01.T01:CDS 55.0%
GATGATGTACCTCCATGGCC+TGG - Chr2:9981148-9981167 None:intergenic 55.0%
GCTCCCCATCCTGTAATGAC+AGG - Chr2:9980949-9980968 None:intergenic 55.0%
GGTTGCATTGTTCCAGGCCA+TGG + Chr2:9981133-9981152 MsG0280007052.01.T01:intron 55.0%
TGCATTGTTCCAGGCCATGG+AGG + Chr2:9981136-9981155 MsG0280007052.01.T01:intron 55.0%
!! ACGGGTTTTGCTATCGGACG+AGG + Chr2:9981225-9981244 MsG0280007052.01.T01:CDS 55.0%
!!! GGCATTTTTGGTCCAGGAGG+TGG - Chr2:9981196-9981215 None:intergenic 55.0%
!!! GGTCCAGGAGGTGGTTTTGA+TGG - Chr2:9981187-9981206 None:intergenic 55.0%
ACAGAATCACCGAGCGGAGG+AGG - Chr2:9976766-9976785 None:intergenic 60.0%
CAGAGGCTGCAGCAGAACGC+AGG - Chr2:9978919-9978938 None:intergenic 65.0%
ATCACCGAGCGGAGGAGGCG+AGG - Chr2:9976761-9976780 None:intergenic 70.0%
ACCGAGCGGAGGAGGCGAGG+CGG - Chr2:9976758-9976777 None:intergenic 75.0%
ACCGCCACCGCTCCAACCGC+CGG + Chr2:9976721-9976740 MsG0280007052.01.T01:CDS 75.0%
ACCGCCTCGCCTCCTCCGCT+CGG + Chr2:9976754-9976773 MsG0280007052.01.T01:CDS 75.0%
ATCGCCGCCGGCGGTTGGAG+CGG - Chr2:9976731-9976750 None:intergenic 75.0%
CGAGGCGGTGGAATCGCCGC+CGG - Chr2:9976743-9976762 None:intergenic 75.0%
GTGGAATCGCCGCCGGCGGT+TGG - Chr2:9976736-9976755 None:intergenic 75.0%
! GAGCGGTGGCGGTGGCTGGA+AGG - Chr2:9976714-9976733 None:intergenic 75.0%
! GTTGGAGCGGTGGCGGTGGC+TGG - Chr2:9976718-9976737 None:intergenic 75.0%
! GAGCGGAGGAGGCGAGGCGG+TGG - Chr2:9976755-9976774 None:intergenic 80.0%
! GCCACCGCTCCAACCGCCGG+CGG + Chr2:9976724-9976743 MsG0280007052.01.T01:CDS 80.0%
! GCCGGCGGTTGGAGCGGTGG+CGG - Chr2:9976725-9976744 None:intergenic 80.0%
! GGCGGTGGAATCGCCGCCGG+CGG - Chr2:9976740-9976759 None:intergenic 80.0%
!! GGCGGTTGGAGCGGTGGCGG+TGG - Chr2:9976722-9976741 None:intergenic 80.0%
! GCCGCCGGCGGTTGGAGCGG+TGG - Chr2:9976728-9976747 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr2 gene 9976606 9981836 9976606 ID=MsG0280007052.01;Name=MsG0280007052.01
Chr2 mRNA 9976606 9981836 9976606 ID=MsG0280007052.01.T01;Parent=MsG0280007052.01;Name=MsG0280007052.01.T01;_AED=0.46;_eAED=0.46;_QI=82|1|1|1|0.90|0.83|12|518|410
Chr2 exon 9976606 9977011 9976606 ID=MsG0280007052.01.T01:exon:3192;Parent=MsG0280007052.01.T01
Chr2 exon 9981149 9981661 9981149 ID=MsG0280007052.01.T01:exon:3202;Parent=MsG0280007052.01.T01
Chr2 exon 9981686 9981836 9981686 ID=MsG0280007052.01.T01:exon:3203;Parent=MsG0280007052.01.T01
Chr2 five_prime_UTR 9976606 9976687 9976606 ID=MsG0280007052.01.T01:five_prime_utr;Parent=MsG0280007052.01.T01
Chr2 CDS 9976688 9977011 9976688 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9977283 9977364 9977283 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9978369 9978463 9978369 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9978558 9978629 9978558 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9978704 9978783 9978704 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9978892 9978976 9978892 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9979857 9979904 9979857 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9979993 9980061 9979993 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9980141 9980278 9980141 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9980959 9981052 9980959 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 CDS 9981149 9981294 9981149 ID=MsG0280007052.01.T01:cds;Parent=MsG0280007052.01.T01
Chr2 three_prime_UTR 9981295 9981661 9981295 ID=MsG0280007052.01.T01:three_prime_utr;Parent=MsG0280007052.01.T01
Chr2 three_prime_UTR 9981686 9981836 9981686 ID=MsG0280007052.01.T01:three_prime_utr;Parent=MsG0280007052.01.T01
Chr2 mRNA 9976607 9981684 9976607 ID=MsG0280007052.01.T02;Parent=MsG0280007052.01;Name=MsG0280007052.01.T02;_AED=0.46;_eAED=0.46;_QI=81|1|1|1|1|1|11|390|410
Chr2 exon 9976607 9977011 9976607 ID=MsG0280007052.01.T02:exon:3204;Parent=MsG0280007052.01.T02
Chr2 exon 9981149 9981684 9981149 ID=MsG0280007052.01.T02:exon:3205;Parent=MsG0280007052.01.T02
Chr2 five_prime_UTR 9976607 9976687 9976607 ID=MsG0280007052.01.T02:five_prime_utr;Parent=MsG0280007052.01.T02
Chr2 CDS 9976688 9977011 9976688 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9977283 9977364 9977283 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9978369 9978463 9978369 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9978558 9978629 9978558 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9978704 9978783 9978704 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9978892 9978976 9978892 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9979857 9979904 9979857 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9979993 9980061 9979993 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9980141 9980278 9980141 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9980959 9981052 9980959 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 CDS 9981149 9981294 9981149 ID=MsG0280007052.01.T02:cds;Parent=MsG0280007052.01.T02
Chr2 three_prime_UTR 9981295 9981684 9981295 ID=MsG0280007052.01.T02:three_prime_utr;Parent=MsG0280007052.01.T02
Gene Sequence

>MsG0280007052.01.T01

ATGGAAACCGTCGAACAGGTTCTCCTTCCAGCCACCGCCACCGCTCCAACCGCCGGCGGCGATTCCACCGCCTCGCCTCCTCCGCTCGGTGATTCTGTTATCATGACTCCCGATCCAGTTATTGACGTTGTTGATGTTGCTGAGCCTGAAATTCATGCTCTGATTTCTGATGAAGAGCATGATCATGAACGTGAAATTGAAATTGATCATGATTTCGATCATGAGAACGAGCTTGATGATCAGCGTGATGAAGGTCAGGAACGTGATCATGTGCCTGAAACCGTTGTTTCATTGGATGATCTCAAGCTCAAGATAATTAAGCAGGTGGAGTATTATTTCAGTGATGAAAATCTGCCCACTGATAAGTATATGCTGAGTCTGGTCAAACGGAACAAGGAAGGGTTTGTTCCTATACCAGCAATTGCATCTTTTAGGAAAATGAAGAAGCTCACTAGAGACCATTTATTTATTGCTGCTGCACTGATGGAATCTTCACTGCTTGTTGTTAGTGGTGATGGGAAGAGGGTTAAGCGGCTCAATCCACTTCGTTTCAATGAAGTTAAAGATCATAAGTTATGTACTGTTTTGGCAGAGAATTTGCCAGAGGACCATTCAAGGGAGAACATTCGGCAAATATTCCAAATAGCTGGAAATATAAAAAAGATAACCATAAATGACCTGCGTTCTGCTGCAGCCTCTGCTAAACATATCAAGCAAGACAAGTTTATTGGTAGTAAGTTGCATGCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGGCAATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAATTCCTCAGTCGGATGGCGGGGAAGTATGCACAAAAAAAACAACCTTCGAAGGGATCTAATTCTGAGAAAAATAGCTCTGGCCATGTATCTGAGAAAACTGGAGATGAGGAGAATCATGGCTCACATGAGTATCGTGAAGATATGCCTGTGGTAGAGGATGGGGAGCATTTGTCAAAGGATAAAGGCGGGCAGAGGAACTCTAAACAAGGAAGATCAAGAAAGCAAAAATACCGTGCTACAAATGGAATGGGCCATGGAGGTACATCATCTATTCGAACTACCGAGCCATCAAAACCACCTCCTGGACCAAAAATGCCTGATGGAACACGGGTTTTGCTATCGGACGAGGTCGCCCTCTTGTTCCTGCATCGAATTAGCAAGATTGATGCCAGATAA

>MsG0280007052.01.T02

ATGGAAACCGTCGAACAGGTTCTCCTTCCAGCCACCGCCACCGCTCCAACCGCCGGCGGCGATTCCACCGCCTCGCCTCCTCCGCTCGGTGATTCTGTTATCATGACTCCCGATCCAGTTATTGACGTTGTTGATGTTGCTGAGCCTGAAATTCATGCTCTGATTTCTGATGAAGAGCATGATCATGAACGTGAAATTGAAATTGATCATGATTTCGATCATGAGAACGAGCTTGATGATCAGCGTGATGAAGGTCAGGAACGTGATCATGTGCCTGAAACCGTTGTTTCATTGGATGATCTCAAGCTCAAGATAATTAAGCAGGTGGAGTATTATTTCAGTGATGAAAATCTGCCCACTGATAAGTATATGCTGAGTCTGGTCAAACGGAACAAGGAAGGGTTTGTTCCTATACCAGCAATTGCATCTTTTAGGAAAATGAAGAAGCTCACTAGAGACCATTTATTTATTGCTGCTGCACTGATGGAATCTTCACTGCTTGTTGTTAGTGGTGATGGGAAGAGGGTTAAGCGGCTCAATCCACTTCGTTTCAATGAAGTTAAAGATCATAAGTTATGTACTGTTTTGGCAGAGAATTTGCCAGAGGACCATTCAAGGGAGAACATTCGGCAAATATTCCAAATAGCTGGAAATATAAAAAAGATAACCATAAATGACCTGCGTTCTGCTGCAGCCTCTGCTAAACATATCAAGCAAGACAAGTTTATTGGTAGTAAGTTGCATGCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGGCAATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAATTCCTCAGTCGGATGGCGGGGAAGTATGCACAAAAAAAACAACCTTCGAAGGGATCTAATTCTGAGAAAAATAGCTCTGGCCATGTATCTGAGAAAACTGGAGATGAGGAGAATCATGGCTCACATGAGTATCGTGAAGATATGCCTGTGGTAGAGGATGGGGAGCATTTGTCAAAGGATAAAGGCGGGCAGAGGAACTCTAAACAAGGAAGATCAAGAAAGCAAAAATACCGTGCTACAAATGGAATGGGCCATGGAGGTACATCATCTATTCGAACTACCGAGCCATCAAAACCACCTCCTGGACCAAAAATGCCTGATGGAACACGGGTTTTGCTATCGGACGAGGTCGCCCTCTTGTTCCTGCATCGAATTAGCAAGATTGATGCCAGATAA

Protein sequence

>MsG0280007052.01.T01

METVEQVLLPATATAPTAGGDSTASPPPLGDSVIMTPDPVIDVVDVAEPEIHALISDEEHDHEREIEIDHDFDHENELDDQRDEGQERDHVPETVVSLDDLKLKIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKMKKLTRDHLFIAAALMESSLLVVSGDGKRVKRLNPLRFNEVKDHKLCTVLAENLPEDHSRENIRQIFQIAGNIKKITINDLRSAAASAKHIKQDKFIGSKLHALVEYETIEAAEKAVAMLNNEQDWRNGMRVKFLSRMAGKYAQKKQPSKGSNSEKNSSGHVSEKTGDEENHGSHEYREDMPVVEDGEHLSKDKGGQRNSKQGRSRKQKYRATNGMGHGGTSSIRTTEPSKPPPGPKMPDGTRVLLSDEVALLFLHRISKIDAR*

>MsG0280007052.01.T02

METVEQVLLPATATAPTAGGDSTASPPPLGDSVIMTPDPVIDVVDVAEPEIHALISDEEHDHEREIEIDHDFDHENELDDQRDEGQERDHVPETVVSLDDLKLKIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKMKKLTRDHLFIAAALMESSLLVVSGDGKRVKRLNPLRFNEVKDHKLCTVLAENLPEDHSRENIRQIFQIAGNIKKITINDLRSAAASAKHIKQDKFIGSKLHALVEYETIEAAEKAVAMLNNEQDWRNGMRVKFLSRMAGKYAQKKQPSKGSNSEKNSSGHVSEKTGDEENHGSHEYREDMPVVEDGEHLSKDKGGQRNSKQGRSRKQKYRATNGMGHGGTSSIRTTEPSKPPPGPKMPDGTRVLLSDEVALLFLHRISKIDAR*