AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017228.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017228.01.T01 MTR_3g103310 90.071 423 21 7 1 407 1 418 0.0 685
MsG0380017228.01.T01 MTR_5g015180 35.915 426 242 9 3 404 2 420 2.36e-56 192
MsG0380017228.01.T01 MTR_4g115400 37.600 125 74 3 128 251 114 235 3.67e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017228.01.T01 AT1G10720 41.732 381 156 11 55 392 51 408 7.97e-67 219
MsG0380017228.01.T01 AT3G49800 36.449 428 224 10 3 392 2 419 6.10e-63 209
MsG0380017228.01.T01 AT5G65910 34.928 418 208 11 3 392 2 383 5.53e-51 177
MsG0380017228.01.T01 AT2G10950 34.975 203 107 7 62 251 25 215 4.35e-24 102
MsG0380017228.01.T01 AT2G10950 34.975 203 107 7 62 251 25 215 4.35e-24 102
MsG0380017228.01.T01 AT2G10950 34.975 203 107 7 62 251 25 215 4.35e-24 102

Find 118 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCCTAACTCGTCAATTT+TGG 0.118472 3:+93808301 MsG0380017228.01.T01:CDS
CCAGACGATGACTCTGATTT+AGG 0.159267 3:+93811817 MsG0380017228.01.T01:CDS
CTTCCGAAAATTTCAAATTC+AGG 0.205294 3:-93811496 None:intergenic
TTATTTATGGTGGATGTAAT+AGG 0.210532 3:+93812443 MsG0380017228.01.T01:three_prime_UTR
GGAAAATCCAACCAGGTTTC+AGG 0.211999 3:-93808558 None:intergenic
GAAATATGAGCATCTATTTC+AGG 0.220511 3:+93812323 MsG0380017228.01.T01:three_prime_UTR
GCATTATTATTATTGTTTCT+AGG 0.244863 3:-93808195 None:intergenic
AGCTTCTCAAATTATGATTC+AGG 0.278846 3:+93811765 MsG0380017228.01.T01:CDS
TCCTGTTCTCCTTCCGAATT+CGG 0.293303 3:-93808459 None:intergenic
GTTGACACACCAAGGCAATT+AGG 0.324414 3:-93812501 None:intergenic
ATATGAGTGAAAGTTACTTT+TGG 0.337115 3:+93808906 MsG0380017228.01.T01:CDS
ATATCTTCTTCATTCACAAT+AGG 0.340594 3:-93811862 None:intergenic
AATTATTGAAATAATCACTA+TGG 0.344835 3:-93812536 None:intergenic
TAATTTGATTGATGATAAAC+TGG 0.347429 3:+93812554 MsG0380017228.01.T01:three_prime_UTR
CAGACGATGACTCTGATTTA+GGG 0.352885 3:+93811818 MsG0380017228.01.T01:CDS
TATTTATGGTGGATGTAATA+GGG 0.355629 3:+93812444 MsG0380017228.01.T01:three_prime_UTR
AAGTACACAATTGAATGTTC+TGG 0.357874 3:+93811664 MsG0380017228.01.T01:CDS
TGGTGGATGTAATAGGGTTC+GGG 0.359587 3:+93812450 MsG0380017228.01.T01:three_prime_UTR
TACCCCAAAATTGACGAGTT+AGG 0.366692 3:-93808305 None:intergenic
CACCAAGGCAATTAGGATTC+AGG 0.370842 3:-93812494 None:intergenic
GATCTCGAGGATGATGATTA+TGG 0.375938 3:+93811895 MsG0380017228.01.T01:CDS
AAAGAGAATTGCCAGATGTT+TGG 0.381680 3:+93812026 MsG0380017228.01.T01:three_prime_UTR
TTATCATCTTCCTCGTCAAT+TGG 0.385268 3:-93808579 None:intergenic
ATGGTGGATGTAATAGGGTT+CGG 0.385725 3:+93812449 MsG0380017228.01.T01:three_prime_UTR
TTCAAATCAAAATTCTGAAA+TGG 0.387588 3:+93808404 MsG0380017228.01.T01:CDS
AGGTGAGGTGGTTGGAGATT+CGG 0.393384 3:-93808175 None:intergenic
ACCCCAAAATTGACGAGTTA+GGG 0.399070 3:-93808304 None:intergenic
TATCTTCTTCATTCACAATA+GGG 0.404231 3:-93811861 None:intergenic
AAAACATCAAACATGGATAC+TGG 0.409853 3:+93812051 MsG0380017228.01.T01:three_prime_UTR
GAGAGAAGAGGTTAAAAGTT+GGG 0.412323 3:-93807997 None:intergenic
ATCAGGTGGGTGTTGCATTA+CGG 0.415921 3:-93807974 None:intergenic
GGATGATCCTCAACCGAATT+CGG 0.422197 3:+93808446 MsG0380017228.01.T01:CDS
CAACAACAACAGCAAGTTGA+TGG 0.425576 3:+93808372 MsG0380017228.01.T01:CDS
GACATGCCTCATCGGACATT+CGG 0.431916 3:+93811595 MsG0380017228.01.T01:CDS
TGAGAGAAGAGGTTAAAAGT+TGG 0.433249 3:-93807998 None:intergenic
ACCGAATTCGGAAGGAGAAC+AGG 0.434653 3:+93808458 MsG0380017228.01.T01:CDS
TGAGATTGAGAAATAGTTGA+TGG 0.437383 3:-93808351 None:intergenic
ATCAGATAAGTCGGTTATTG+AGG 0.438020 3:+93811696 MsG0380017228.01.T01:CDS
TGTATTCAAAACAACTCAAA+TGG 0.440524 3:+93812221 MsG0380017228.01.T01:three_prime_UTR
AGAGGTTAAAAGTTGGGATC+AGG 0.455029 3:-93807991 None:intergenic
CTCCTGAATCCTAATTGCCT+TGG 0.461505 3:+93812492 MsG0380017228.01.T01:three_prime_UTR
TCTCCTTCCGAATTCGGTTG+AGG 0.463205 3:-93808453 None:intergenic
CAGCATCATGATTCTACTCC+CGG 0.470404 3:+93811547 MsG0380017228.01.T01:CDS
GATATCGAAAACATGGTTGT+GGG 0.472505 3:+93812298 MsG0380017228.01.T01:three_prime_UTR
AGATATCGAAAACATGGTTG+TGG 0.473074 3:+93812297 MsG0380017228.01.T01:three_prime_UTR
TGAGAAATAGTTGATGGAGG+AGG 0.481171 3:-93808345 None:intergenic
TTCCTGCATCCACATTGATC+TGG 0.490551 3:-93811455 None:intergenic
TGGAACAAGGTGTGTTTCGT+GGG 0.498516 3:+93808424 MsG0380017228.01.T01:CDS
ATGAGGCATGTCATCAGAAT+AGG 0.499437 3:-93811584 None:intergenic
ATTCTTAGTGCAGCTAATCT+CGG 0.500556 3:-93808866 None:intergenic
AGCCAGATCAATGTGGATGC+AGG 0.502125 3:+93811453 MsG0380017228.01.T01:CDS
AAATATGAGCATCTATTTCA+GGG 0.503499 3:+93812324 MsG0380017228.01.T01:three_prime_UTR
ATTATTATTGTTTCTAGGTG+AGG 0.514535 3:-93808190 None:intergenic
ATTATTGTTTCTAGGTGAGG+TGG 0.517111 3:-93808187 None:intergenic
ATAGGTGTCATCTGATAAGC+CGG 0.517484 3:-93811566 None:intergenic
TTCGGAAGGAGAACAGGAAA+GGG 0.519132 3:+93808464 MsG0380017228.01.T01:CDS
TAACTTCGCTCACCATTATG+TGG 0.525605 3:-93812097 None:intergenic
TTTGTTGTTATTGAGAGAAG+AGG 0.526195 3:-93808009 None:intergenic
CCTAAATCAGAGTCATCGTC+TGG 0.526555 3:-93811817 None:intergenic
ATGACGACGGTGATGATGAT+TGG 0.533375 3:+93811794 MsG0380017228.01.T01:CDS
GATTGAGAAATAGTTGATGG+AGG 0.533882 3:-93808348 None:intergenic
ATAGAATAGAATAGATAGAT+CGG 0.534273 3:+93807914 MsG0380017228.01.T01:five_prime_UTR
TTGATTTCTTGTTCCGTGTG+AGG 0.537835 3:-93812003 None:intergenic
AACAACCTCTTTGTCTGTGA+TGG 0.543867 3:+93811624 MsG0380017228.01.T01:CDS
CGATTCGGAGAGAGTTTGCA+AGG 0.544073 3:-93808110 None:intergenic
TAGGGTTCGGGTTTCTACCC+CGG 0.547800 3:+93812462 MsG0380017228.01.T01:three_prime_UTR
AGCATGATCTCGTTGGTCCT+CGG 0.550779 3:-93808822 None:intergenic
TTTGATATACAATGCGCGGT+TGG 0.551967 3:+93808489 MsG0380017228.01.T01:CDS
GCAAGGCTAGGTGGGTTTGA+AGG 0.553989 3:+93812191 MsG0380017228.01.T01:three_prime_UTR
TTGTTTCTAGGTGAGGTGGT+TGG 0.556311 3:-93808183 None:intergenic
GGTTAAAAGTTGGGATCAGG+TGG 0.557489 3:-93807988 None:intergenic
ATCACATTTATCAGATAAGT+CGG 0.557852 3:+93811687 MsG0380017228.01.T01:CDS
TAGTAGCAATTCAGATTCAA+AGG 0.559727 3:+93811930 MsG0380017228.01.T01:CDS
GCTTAATAAACAAGATTCTG+AGG 0.560595 3:+93808958 MsG0380017228.01.T01:CDS
AGGGGCACTGGAACCTCACA+CGG 0.560694 3:+93811990 MsG0380017228.01.T01:three_prime_UTR
AAATGCTGTGATGATATTTG+AGG 0.563683 3:+93812123 MsG0380017228.01.T01:three_prime_UTR
TCGCTATGCATCCTGAAACC+TGG 0.573694 3:+93808547 MsG0380017228.01.T01:CDS
CGCGGTTGGAATTACTGAGG+AGG 0.575478 3:+93808503 MsG0380017228.01.T01:CDS
ATGGAACAAGGTGTGTTTCG+TGG 0.577001 3:+93808423 MsG0380017228.01.T01:CDS
CAAAATTCTGAAATGGAACA+AGG 0.577149 3:+93808411 MsG0380017228.01.T01:CDS
AATAATGATGAAACGTTGCA+AGG 0.577943 3:+93808243 MsG0380017228.01.T01:CDS
ATCTGCCATCACAGACAAAG+AGG 0.578070 3:-93811629 None:intergenic
ATTCGGAAGGAGAACAGGAA+AGG 0.580219 3:+93808463 MsG0380017228.01.T01:CDS
ATTCTGATGACATGCCTCAT+CGG 0.584652 3:+93811587 MsG0380017228.01.T01:CDS
ATCATGCTATGGTTGTTGAA+AGG 0.587242 3:+93808837 MsG0380017228.01.T01:CDS
CAAACACAGTTGACACACCA+AGG 0.593634 3:-93812509 None:intergenic
GATGAAACGTTGCAAGGTCG+TGG 0.598947 3:+93808249 MsG0380017228.01.T01:CDS
AGGATTCAGGAGAACAACAC+CGG 0.602635 3:-93812481 None:intergenic
TATATCTTTCAGCGATCTCG+AGG 0.605970 3:+93811882 MsG0380017228.01.T01:CDS
TTGATATTTGATGACAAACA+AGG 0.613012 3:-93812398 None:intergenic
ACAAACAATAAACCATTCGA+AGG 0.617726 3:+93808027 MsG0380017228.01.T01:five_prime_UTR
AGACGATGACTCTGATTTAG+GGG 0.618455 3:+93811819 MsG0380017228.01.T01:CDS
CAACCATAGCATGATCTCGT+TGG 0.618660 3:-93808829 None:intergenic
GGAATTTGATATACAATGCG+CGG 0.621961 3:+93808485 MsG0380017228.01.T01:CDS
GATCCTCAACCGAATTCGGA+AGG 0.622984 3:+93808450 MsG0380017228.01.T01:CDS
GGATTCAGGAGAACAACACC+GGG 0.625463 3:-93812480 None:intergenic
TATGCATCCTGAAACCTGGT+TGG 0.632143 3:+93808551 MsG0380017228.01.T01:CDS
GTCAATTGGAAAATCCAACC+AGG 0.642583 3:-93808565 None:intergenic
GTTAAAAGTTGGGATCAGGT+GGG 0.652987 3:-93807987 None:intergenic
TAACTTTCACTCATATGACA+AGG 0.653724 3:-93808899 None:intergenic
GGACCAACGAGATCATGCTA+TGG 0.655051 3:+93808826 MsG0380017228.01.T01:CDS
GGGTTTGTTTGATTTCGTCG+AGG 0.657504 3:-93808284 None:intergenic
TAGGTGTCATCTGATAAGCC+GGG 0.664971 3:-93811565 None:intergenic
GACGATGACTCTGATTTAGG+GGG 0.668919 3:+93811820 MsG0380017228.01.T01:CDS
AGGTGGGTGTTGCATTACGG+TGG 0.672727 3:-93807971 None:intergenic
AACTTTCACTCATATGACAA+GGG 0.678075 3:-93808898 None:intergenic
TAGCAATTCAGATTCAAAGG+TGG 0.680098 3:+93811933 MsG0380017228.01.T01:CDS
TTCAAACCCACCTAGCCTTG+CGG 0.682308 3:-93812189 None:intergenic
GATTCGGAGAGAGTTTGCAA+GGG 0.683544 3:-93808109 None:intergenic
CTATATCCGAATGTCCGATG+AGG 0.695034 3:-93811601 None:intergenic
TCATGGTAGCCAGATCAATG+TGG 0.707205 3:+93811446 MsG0380017228.01.T01:CDS
GAATAGAATAGATAGATCGG+TGG 0.708675 3:+93807917 MsG0380017228.01.T01:five_prime_UTR
ATTCAGGACTATGATGACGA+CGG 0.722996 3:+93811781 MsG0380017228.01.T01:CDS
GGAACAAGGTGTGTTTCGTG+GGG 0.730599 3:+93808425 MsG0380017228.01.T01:CDS
GACGAGGAAGATGATAACGA+CGG 0.733347 3:+93808585 MsG0380017228.01.T01:CDS
ATGCGCGGTTGGAATTACTG+AGG 0.743287 3:+93808500 MsG0380017228.01.T01:CDS
AACTTCAGATGACACGACTG+AGG 0.758277 3:+93811960 MsG0380017228.01.T01:exon
GATTCAGGAGAACAACACCG+GGG 0.849144 3:-93812479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATCAGAAA+TGG - Chr3:93808700-93808719 None:intergenic 10.0%
!!! ATATTTTTAATTTTACCATT+AGG + Chr3:93810087-93810106 MsG0380017228.01.T01:intron 10.0%
!!! TATTTTTAATTTTACCATTA+GGG + Chr3:93810088-93810107 MsG0380017228.01.T01:intron 10.0%
!!! TGATTTTTTTCATTTATTTA+TGG + Chr3:93812430-93812449 MsG0380017228.01.T01:three_prime_UTR 10.0%
!! AAAAAAAAATTCCTGATTAT+TGG + Chr3:93809500-93809519 MsG0380017228.01.T01:intron 15.0%
!! AATTATTGAAATAATCACTA+TGG - Chr3:93812539-93812558 None:intergenic 15.0%
!! ATTAAAACTCAAAATCTAAA+TGG + Chr3:93809733-93809752 MsG0380017228.01.T01:intron 15.0%
!! TTTATGTATTTATAATTGCT+AGG + Chr3:93809094-93809113 MsG0380017228.01.T01:intron 15.0%
!!! ATTTTTAATTTTACCATTAG+GGG + Chr3:93810089-93810108 MsG0380017228.01.T01:intron 15.0%
!!! TTTTTTTCATTTATTTATGG+TGG + Chr3:93812433-93812452 MsG0380017228.01.T01:three_prime_UTR 15.0%
!! AAAAACAAAAAATGTCATCA+TGG + Chr3:93808076-93808095 MsG0380017228.01.T01:exon 20.0%
!! AAAGTGAAAGATTTGTAATT+GGG + Chr3:93811158-93811177 MsG0380017228.01.T01:intron 20.0%
!! ATAATAATGTGCTAGATTAT+TGG + Chr3:93808718-93808737 MsG0380017228.01.T01:intron 20.0%
!! ATAGAATAGAATAGATAGAT+CGG + Chr3:93807914-93807933 MsG0380017228.01.T01:five_prime_UTR 20.0%
!! ATTTAAATTTCTACTTCAGT+TGG + Chr3:93810357-93810376 MsG0380017228.01.T01:intron 20.0%
!! GAAATAAAATAATGTTGAGT+CGG - Chr3:93810030-93810049 None:intergenic 20.0%
!! GAATTAGAAGAAATCTTAAA+AGG - Chr3:93810519-93810538 None:intergenic 20.0%
!! TAAAGTGAAAGATTTGTAAT+TGG + Chr3:93811157-93811176 MsG0380017228.01.T01:intron 20.0%
!! TAATCGTGTGTATTATAATT+TGG - Chr3:93810697-93810716 None:intergenic 20.0%
!! TTGCTTGTAAATTATAAACT+AGG + Chr3:93809270-93809289 MsG0380017228.01.T01:intron 20.0%
!! TTTAAATTTCTACTTCAGTT+GGG + Chr3:93810358-93810377 MsG0380017228.01.T01:intron 20.0%
!!! ATTCACTTTTAATTTGTTTC+TGG - Chr3:93809715-93809734 None:intergenic 20.0%
!!! GCATTATTATTATTGTTTCT+AGG - Chr3:93808198-93808217 None:intergenic 20.0%
!!! TATTTTAAAGCTACGATAAT+GGG + Chr3:93811382-93811401 MsG0380017228.01.T01:intron 20.0%
!!! TTAAAAACTTATAACTTGTG+AGG - Chr3:93811006-93811025 None:intergenic 20.0%
!!! TTCAAATCAAAATTCTGAAA+TGG + Chr3:93808404-93808423 MsG0380017228.01.T01:CDS 20.0%
!!! TTGTTTTCAGTTTTATTACT+TGG - Chr3:93811727-93811746 None:intergenic 20.0%
!!! TTTTTAATTTTACCATTAGG+GGG + Chr3:93810090-93810109 MsG0380017228.01.T01:intron 20.0%
!!! TTTTTTAGATATCGAAAACA+TGG + Chr3:93812291-93812310 MsG0380017228.01.T01:three_prime_UTR 20.0%
! AAATATGAGCATCTATTTCA+GGG + Chr3:93812324-93812343 MsG0380017228.01.T01:three_prime_UTR 25.0%
! AATAAAGCAAATATTCTCCA+TGG - Chr3:93811214-93811233 None:intergenic 25.0%
! AATATGTAATAGTGGTATAG+CGG + Chr3:93810254-93810273 MsG0380017228.01.T01:intron 25.0%
! AATCCAAGAATAGAGATTAT+TGG + Chr3:93810601-93810620 MsG0380017228.01.T01:intron 25.0%
! AATTAAGCATCATGCTTTAT+CGG - Chr3:93809671-93809690 None:intergenic 25.0%
! ACTATTACATATTGGGATTT+GGG - Chr3:93810247-93810266 None:intergenic 25.0%
! AGTTCAAAACAACTAATTAC+TGG + Chr3:93809757-93809776 MsG0380017228.01.T01:intron 25.0%
! ATATCTTCTTCATTCACAAT+AGG - Chr3:93811865-93811884 None:intergenic 25.0%
! ATATGTTTGGATTGATGAAA+AGG + Chr3:93810760-93810779 MsG0380017228.01.T01:intron 25.0%
! ATCACATTTATCAGATAAGT+CGG + Chr3:93811687-93811706 MsG0380017228.01.T01:CDS 25.0%
! ATCGTTAACATTCTATTGTT+TGG + Chr3:93810797-93810816 MsG0380017228.01.T01:intron 25.0%
! ATTGTTATAATCTTTCTTCC+TGG + Chr3:93810639-93810658 MsG0380017228.01.T01:intron 25.0%
! CTATACCACTATTACATATT+GGG - Chr3:93810254-93810273 None:intergenic 25.0%
! GAAAACAAAGATCTAAAAAG+TGG + Chr3:93811739-93811758 MsG0380017228.01.T01:CDS 25.0%
! GATAACAAAAACATTTAGAG+AGG - Chr3:93810301-93810320 None:intergenic 25.0%
! GGCAAAAGAAATTTAGAAAA+TGG - Chr3:93810498-93810517 None:intergenic 25.0%
! TATCTTCTTCATTCACAATA+GGG - Chr3:93811864-93811883 None:intergenic 25.0%
! TATGTTTGGATTGATGAAAA+GGG + Chr3:93810761-93810780 MsG0380017228.01.T01:intron 25.0%
! TCATATGTTAATGCCTAATA+CGG + Chr3:93810737-93810756 MsG0380017228.01.T01:intron 25.0%
! TGAAGATAATGATTATGTTG+TGG - Chr3:93809834-93809853 None:intergenic 25.0%
! TGTAAATTATAAACTAGGCA+GGG + Chr3:93809275-93809294 MsG0380017228.01.T01:intron 25.0%
! TGTATTCAAAACAACTCAAA+TGG + Chr3:93812221-93812240 MsG0380017228.01.T01:three_prime_UTR 25.0%
! TTAATGATCCGCTATTAATT+GGG - Chr3:93809553-93809572 None:intergenic 25.0%
! TTCCAATAACAATCAAAATC+TGG - Chr3:93810583-93810602 None:intergenic 25.0%
! TTGCTATCTAATAGAAATAC+TGG - Chr3:93809154-93809173 None:intergenic 25.0%
! TTGTAAATTATAAACTAGGC+AGG + Chr3:93809274-93809293 MsG0380017228.01.T01:intron 25.0%
! TTTAATGATCCGCTATTAAT+TGG - Chr3:93809554-93809573 None:intergenic 25.0%
! TTTCCAATAATCTCTATTCT+TGG - Chr3:93810607-93810626 None:intergenic 25.0%
! TTTGGTAAAAACATCAAACA+TGG + Chr3:93812044-93812063 MsG0380017228.01.T01:three_prime_UTR 25.0%
!! AAATGTTCCTTTTCTTAGTT+TGG + Chr3:93811286-93811305 MsG0380017228.01.T01:intron 25.0%
!! AAGCAATTTTAAATACAGAC+TGG + Chr3:93810552-93810571 MsG0380017228.01.T01:intron 25.0%
!! ATTTTGTACTTTTGCATTCA+AGG + Chr3:93808936-93808955 MsG0380017228.01.T01:CDS 25.0%
!! TTGATATTTGATGACAAACA+AGG - Chr3:93812401-93812420 None:intergenic 25.0%
!! TTTTTCCATATTTGTGATAG+CGG - Chr3:93810160-93810179 None:intergenic 25.0%
!!! AAGCCTGAATTTGAAATTTT+CGG + Chr3:93811493-93811512 MsG0380017228.01.T01:CDS 25.0%
!!! ATATGAGTGAAAGTTACTTT+TGG + Chr3:93808906-93808925 MsG0380017228.01.T01:CDS 25.0%
!!! ATCTTAGTTTTAACTTTTGC+AGG + Chr3:93811423-93811442 MsG0380017228.01.T01:intron 25.0%
!!! ATCTTCATTTTTAGATAGTG+AGG + Chr3:93809847-93809866 MsG0380017228.01.T01:intron 25.0%
!!! ATTATTATTGTTTCTAGGTG+AGG - Chr3:93808193-93808212 None:intergenic 25.0%
!!! GTATTTTAAAGCTACGATAA+TGG + Chr3:93811381-93811400 MsG0380017228.01.T01:intron 25.0%
!!! TATCTTTTTTGTCCACATAA+TGG + Chr3:93812085-93812104 MsG0380017228.01.T01:three_prime_UTR 25.0%
!!! TATTTATGGTGGATGTAATA+GGG + Chr3:93812444-93812463 MsG0380017228.01.T01:three_prime_UTR 25.0%
!!! TATTTGCTTTATTTGAAGAG+AGG + Chr3:93811221-93811240 MsG0380017228.01.T01:intron 25.0%
!!! TGTTTTAAGACACATCATAT+AGG + Chr3:93812354-93812373 MsG0380017228.01.T01:three_prime_UTR 25.0%
!!! TTATTTATGGTGGATGTAAT+AGG + Chr3:93812443-93812462 MsG0380017228.01.T01:three_prime_UTR 25.0%
!!! TTCCAGATTTTGATTGTTAT+TGG + Chr3:93810578-93810597 MsG0380017228.01.T01:intron 25.0%
AAAACATCAAACATGGATAC+TGG + Chr3:93812051-93812070 MsG0380017228.01.T01:three_prime_UTR 30.0%
AAATCCGCTATAAGAAATAG+CGG + Chr3:93809573-93809592 MsG0380017228.01.T01:intron 30.0%
AAATGCTGTGATGATATTTG+AGG + Chr3:93812123-93812142 MsG0380017228.01.T01:three_prime_UTR 30.0%
AACTTTCACTCATATGACAA+GGG - Chr3:93808901-93808920 None:intergenic 30.0%
AAGAATGCAACATGATTTCA+TGG + Chr3:93810841-93810860 MsG0380017228.01.T01:intron 30.0%
AAGGAATAAATGCAACAGTA+AGG - Chr3:93809329-93809348 None:intergenic 30.0%
AAGTACACAATTGAATGTTC+TGG + Chr3:93811664-93811683 MsG0380017228.01.T01:CDS 30.0%
AATAACCGCTATCACAAATA+TGG + Chr3:93810152-93810171 MsG0380017228.01.T01:intron 30.0%
AATAATGATGAAACGTTGCA+AGG + Chr3:93808243-93808262 MsG0380017228.01.T01:CDS 30.0%
AATCCAAACATATCCGTATT+AGG - Chr3:93810753-93810772 None:intergenic 30.0%
AATGAGTTCTACCAATAATC+AGG - Chr3:93809514-93809533 None:intergenic 30.0%
ACAAACAATAAACCATTCGA+AGG + Chr3:93808027-93808046 MsG0380017228.01.T01:five_prime_UTR 30.0%
AGCTTCTCAAATTATGATTC+AGG + Chr3:93811765-93811784 MsG0380017228.01.T01:CDS 30.0%
ATGAAAAGGGATAAATGGAT+GGG + Chr3:93810774-93810793 MsG0380017228.01.T01:intron 30.0%
CAAATCCCAATATGTAATAG+TGG + Chr3:93810246-93810265 MsG0380017228.01.T01:intron 30.0%
CAAGATAACCCAATTAATAG+CGG + Chr3:93809542-93809561 MsG0380017228.01.T01:intron 30.0%
CAATGAACCAAACTAAGAAA+AGG - Chr3:93811296-93811315 None:intergenic 30.0%
CACTATTACATATTGGGATT+TGG - Chr3:93810248-93810267 None:intergenic 30.0%
CTATTACATATTGGGATTTG+GGG - Chr3:93810246-93810265 None:intergenic 30.0%
CTTCCGAAAATTTCAAATTC+AGG - Chr3:93811499-93811518 None:intergenic 30.0%
GAAATATGAGCATCTATTTC+AGG + Chr3:93812323-93812342 MsG0380017228.01.T01:three_prime_UTR 30.0%
GATTGATGAAAAGGGATAAA+TGG + Chr3:93810769-93810788 MsG0380017228.01.T01:intron 30.0%
GCAAAAAATTGTAGGGAAAA+AGG - Chr3:93812170-93812189 None:intergenic 30.0%
GCTATACCACTATTACATAT+TGG - Chr3:93810255-93810274 None:intergenic 30.0%
GCTTAATAAACAAGATTCTG+AGG + Chr3:93808958-93808977 MsG0380017228.01.T01:CDS 30.0%
TAACTTTCACTCATATGACA+AGG - Chr3:93808902-93808921 None:intergenic 30.0%
TAAGCCACAATATACAAAGA+GGG - Chr3:93809369-93809388 None:intergenic 30.0%
TAATGATTATGTTGTGGAAG+AGG - Chr3:93809828-93809847 None:intergenic 30.0%
TAGTAGCAATTCAGATTCAA+AGG + Chr3:93811930-93811949 MsG0380017228.01.T01:CDS 30.0%
TATGAAATGAAGAGAGAAGA+TGG + Chr3:93809927-93809946 MsG0380017228.01.T01:intron 30.0%
TGAGATTGAGAAATAGTTGA+TGG - Chr3:93808354-93808373 None:intergenic 30.0%
TTAAGCCACAATATACAAAG+AGG - Chr3:93809370-93809389 None:intergenic 30.0%
TTAGGACTTAGGATATCTAA+TGG - Chr3:93810978-93810997 None:intergenic 30.0%
TTCATTCATAGCTACAGAAA+TGG - Chr3:93808763-93808782 None:intergenic 30.0%
TTCCTTTAATTCATGTTGCT+TGG + Chr3:93809343-93809362 MsG0380017228.01.T01:intron 30.0%
TTCTCAGAGGTTTGAATTTA+TGG + Chr3:93809435-93809454 MsG0380017228.01.T01:intron 30.0%
TTGTTTGGATTGTTCAGAAT+AGG + Chr3:93810812-93810831 MsG0380017228.01.T01:intron 30.0%
!! AAACATCAGATTGCTTTTCT+TGG - Chr3:93812263-93812282 None:intergenic 30.0%
!! AAGTGTTTCTCATTTTTCCT+CGG + Chr3:93811251-93811270 MsG0380017228.01.T01:intron 30.0%
!! CAAAATTCTGAAATGGAACA+AGG + Chr3:93808411-93808430 MsG0380017228.01.T01:CDS 30.0%
!! GATCTATCATTGTTTTACCA+TGG + Chr3:93811194-93811213 MsG0380017228.01.T01:intron 30.0%
!! GGATTCATTTTAGAAGTTGA+AGG - Chr3:93809878-93809897 None:intergenic 30.0%
!! TGATGTTTTTACCAAACATC+TGG - Chr3:93812040-93812059 None:intergenic 30.0%
!! TTAGAGAGGTGTTAAATAAC+CGG - Chr3:93810287-93810306 None:intergenic 30.0%
!! TTATCCGCTATTTCTTATAG+CGG - Chr3:93809580-93809599 None:intergenic 30.0%
!! TTTGTTGTTATTGAGAGAAG+AGG - Chr3:93808012-93808031 None:intergenic 30.0%
AAACTGCGAAATAACAAACC+TGG - Chr3:93808997-93809016 None:intergenic 35.0%
AAAGAGAATTGCCAGATGTT+TGG + Chr3:93812026-93812045 MsG0380017228.01.T01:three_prime_UTR 35.0%
AACTGCGAAATAACAAACCT+GGG - Chr3:93808996-93809015 None:intergenic 35.0%
AGATATCGAAAACATGGTTG+TGG + Chr3:93812297-93812316 MsG0380017228.01.T01:three_prime_UTR 35.0%
AGCAATCCAAGCTTGAAATT+TGG + Chr3:93809169-93809188 MsG0380017228.01.T01:intron 35.0%
ATATCTAATGGAGAGTAGAG+TGG - Chr3:93810966-93810985 None:intergenic 35.0%
ATCAGATAAGTCGGTTATTG+AGG + Chr3:93811696-93811715 MsG0380017228.01.T01:CDS 35.0%
ATCATGCTATGGTTGTTGAA+AGG + Chr3:93808837-93808856 MsG0380017228.01.T01:CDS 35.0%
ATGCCTAATACGGATATGTT+TGG + Chr3:93810747-93810766 MsG0380017228.01.T01:intron 35.0%
ATTCTTAGTGCAGCTAATCT+CGG - Chr3:93808869-93808888 None:intergenic 35.0%
CAAGCTTGAAATTTGGAAGT+AGG + Chr3:93809176-93809195 MsG0380017228.01.T01:intron 35.0%
CTACTTCCAAATTTCAAGCT+TGG - Chr3:93809178-93809197 None:intergenic 35.0%
GAATAGAATAGATAGATCGG+TGG + Chr3:93807917-93807936 MsG0380017228.01.T01:five_prime_UTR 35.0%
GAGAGAAGAGGTTAAAAGTT+GGG - Chr3:93808000-93808019 None:intergenic 35.0%
GATATCGAAAACATGGTTGT+GGG + Chr3:93812298-93812317 MsG0380017228.01.T01:three_prime_UTR 35.0%
GATGAAAAGGGATAAATGGA+TGG + Chr3:93810773-93810792 MsG0380017228.01.T01:intron 35.0%
GGAATTTGATATACAATGCG+CGG + Chr3:93808485-93808504 MsG0380017228.01.T01:CDS 35.0%
GTCAATGTCTCAATACTCAA+TGG + Chr3:93810321-93810340 MsG0380017228.01.T01:intron 35.0%
TAGCAATTCAGATTCAAAGG+TGG + Chr3:93811933-93811952 MsG0380017228.01.T01:CDS 35.0%
TGAGAGAAGAGGTTAAAAGT+TGG - Chr3:93808001-93808020 None:intergenic 35.0%
TTATCATCTTCCTCGTCAAT+TGG - Chr3:93808582-93808601 None:intergenic 35.0%
! AAACCCTAACTCGTCAATTT+TGG + Chr3:93808301-93808320 MsG0380017228.01.T01:CDS 35.0%
! AACCCTAACTCGTCAATTTT+GGG + Chr3:93808302-93808321 MsG0380017228.01.T01:CDS 35.0%
! ACTTTTGCATCCTTATCAGT+CGG - Chr3:93809304-93809323 None:intergenic 35.0%
! AGCGGTTATTGATTACATAG+CGG - Chr3:93810142-93810161 None:intergenic 35.0%
! ATAACTTGTGAGGCTATGTT+AGG - Chr3:93810996-93811015 None:intergenic 35.0%
! ATCGATGATGATGATGATGA+TGG + Chr3:93808129-93808148 MsG0380017228.01.T01:CDS 35.0%
! CATCATCATCATCATCGATT+CGG - Chr3:93808128-93808147 None:intergenic 35.0%
! GGTTTTCAATGCCATCTTTT+GGG + Chr3:93809200-93809219 MsG0380017228.01.T01:intron 35.0%
! TGGTTTTCAATGCCATCTTT+TGG + Chr3:93809199-93809218 MsG0380017228.01.T01:intron 35.0%
! TTTCTTCCTGGTGTGAATTT+TGG + Chr3:93810651-93810670 MsG0380017228.01.T01:intron 35.0%
!! ATAAGAAATAGCGGATAACG+TGG + Chr3:93809582-93809601 MsG0380017228.01.T01:intron 35.0%
!! ATTATTGTTTCTAGGTGAGG+TGG - Chr3:93808190-93808209 None:intergenic 35.0%
!! GATTGAGAAATAGTTGATGG+AGG - Chr3:93808351-93808370 None:intergenic 35.0%
!!! CATCTTTTGGGACTTTACTA+GGG + Chr3:93809212-93809231 MsG0380017228.01.T01:intron 35.0%
!!! GCTGTAGTTGTTTCTTCTTT+TGG + Chr3:93811104-93811123 MsG0380017228.01.T01:intron 35.0%
!!! GTTTTAACTTTTGCAGGTCA+TGG + Chr3:93811429-93811448 MsG0380017228.01.T01:intron 35.0%
!!! TGTAGATTTTGAAATGTCCG+AGG + Chr3:93808805-93808824 MsG0380017228.01.T01:intron 35.0%
!!! TTTATGCTTTTTCCCCCTAA+TGG - Chr3:93810105-93810124 None:intergenic 35.0%
AAATATCACATGAGCTGCAC+AGG - Chr3:93810073-93810092 None:intergenic 40.0%
AACAACCTCTTTGTCTGTGA+TGG + Chr3:93811624-93811643 MsG0380017228.01.T01:CDS 40.0%
AATGAAGAGAGAAGATGGAG+AGG + Chr3:93809932-93809951 MsG0380017228.01.T01:intron 40.0%
ACAAAAAAGCGACCTTCGAA+TGG - Chr3:93808042-93808061 None:intergenic 40.0%
ACCCCAAAATTGACGAGTTA+GGG - Chr3:93808307-93808326 None:intergenic 40.0%
ACTGCGAAATAACAAACCTG+GGG - Chr3:93808995-93809014 None:intergenic 40.0%
AGACGATGACTCTGATTTAG+GGG + Chr3:93811819-93811838 MsG0380017228.01.T01:CDS 40.0%
AGAGGTTAAAAGTTGGGATC+AGG - Chr3:93807994-93808013 None:intergenic 40.0%
ATAACGTGGCAGGAAAATAG+CGG + Chr3:93809596-93809615 MsG0380017228.01.T01:intron 40.0%
ATGAGGCATGTCATCAGAAT+AGG - Chr3:93811587-93811606 None:intergenic 40.0%
ATTCTGATGACATGCCTCAT+CGG + Chr3:93811587-93811606 MsG0380017228.01.T01:CDS 40.0%
CAGACGATGACTCTGATTTA+GGG + Chr3:93811818-93811837 MsG0380017228.01.T01:CDS 40.0%
CATTTCAACACTACTTTCCG+AGG - Chr3:93811271-93811290 None:intergenic 40.0%
CCTAGTAAAGTCCCAAAAGA+TGG - Chr3:93809214-93809233 None:intergenic 40.0%
CCTTGCGGCAAAAAATTGTA+GGG - Chr3:93812177-93812196 None:intergenic 40.0%
GATAACAAGAGCAGTGTGAA+AGG - Chr3:93809026-93809045 None:intergenic 40.0%
GCTTGAAATTTGGAAGTAGG+TGG + Chr3:93809179-93809198 MsG0380017228.01.T01:intron 40.0%
GGAAAAAACCACCACTATTG+CGG + Chr3:93810173-93810192 MsG0380017228.01.T01:intron 40.0%
GGCCAAGCAACATGAATTAA+AGG - Chr3:93809348-93809367 None:intergenic 40.0%
GGTGAGATATTGGATGGAAT+GGG - Chr3:93810874-93810893 None:intergenic 40.0%
GTCAATTGGAAAATCCAACC+AGG - Chr3:93808568-93808587 None:intergenic 40.0%
GTGAGATATTGGATGGAATG+GGG - Chr3:93810873-93810892 None:intergenic 40.0%
GTTAAAAGTTGGGATCAGGT+GGG - Chr3:93807990-93808009 None:intergenic 40.0%
TAACTTCGCTCACCATTATG+TGG - Chr3:93812100-93812119 None:intergenic 40.0%
TACCCCAAAATTGACGAGTT+AGG - Chr3:93808308-93808327 None:intergenic 40.0%
TCTGATTTAGGGGGATATAG+TGG + Chr3:93811829-93811848 MsG0380017228.01.T01:CDS 40.0%
TGGAGCACACAAGAATATAC+AGG - Chr3:93810478-93810497 None:intergenic 40.0%
TTAGTGATGAGAGGTTGCTT+AGG + Chr3:93809965-93809984 MsG0380017228.01.T01:intron 40.0%
TTATGACCGTGCACTTTGAT+GGG + Chr3:93811059-93811078 MsG0380017228.01.T01:intron 40.0%
TTGATTTCTTGTTCCGTGTG+AGG - Chr3:93812006-93812025 None:intergenic 40.0%
TTGGCCCTCTTTGTATATTG+TGG + Chr3:93809362-93809381 MsG0380017228.01.T01:intron 40.0%
TTTGATATACAATGCGCGGT+TGG + Chr3:93808489-93808508 MsG0380017228.01.T01:CDS 40.0%
! AAATAGCGGAAACTGCAAAG+TGG + Chr3:93809610-93809629 MsG0380017228.01.T01:intron 40.0%
! ACACGACTGAGGTGATTTTA+GGG + Chr3:93811971-93811990 MsG0380017228.01.T01:three_prime_UTR 40.0%
! ACACTGCTCTTGTTATCTCT+TGG + Chr3:93809029-93809048 MsG0380017228.01.T01:intron 40.0%
! ACCCTAACTCGTCAATTTTG+GGG + Chr3:93808303-93808322 MsG0380017228.01.T01:CDS 40.0%
! ATAGGTGTCATCTGATAAGC+CGG - Chr3:93811569-93811588 None:intergenic 40.0%
! ATTCAGGACTATGATGACGA+CGG + Chr3:93811781-93811800 MsG0380017228.01.T01:CDS 40.0%
! CAACAACAACAGCAAGTTGA+TGG + Chr3:93808372-93808391 MsG0380017228.01.T01:CDS 40.0%
! CAATCTGAAGTTCTTCTCAG+AGG + Chr3:93809422-93809441 MsG0380017228.01.T01:intron 40.0%
! GTTGGATTTTCCAATTGACG+AGG + Chr3:93808569-93808588 MsG0380017228.01.T01:CDS 40.0%
!! ATGGTGGATGTAATAGGGTT+CGG + Chr3:93812449-93812468 MsG0380017228.01.T01:three_prime_UTR 40.0%
!! GGGTTGGCTAATAATTGAGT+TGG + Chr3:93811079-93811098 MsG0380017228.01.T01:intron 40.0%
!! TGAGAAATAGTTGATGGAGG+AGG - Chr3:93808348-93808367 None:intergenic 40.0%
!!! AACTCGTCAATTTTGGGGTA+TGG + Chr3:93808308-93808327 MsG0380017228.01.T01:CDS 40.0%
!!! CCATCTTTTGGGACTTTACT+AGG + Chr3:93809211-93809230 MsG0380017228.01.T01:intron 40.0%
AAAAACCACCACTATTGCGG+TGG + Chr3:93810176-93810195 MsG0380017228.01.T01:intron 45.0%
AACTTCAGATGACACGACTG+AGG + Chr3:93811960-93811979 MsG0380017228.01.T01:exon 45.0%
AAGAGCAGTGTGAAAGGCAA+AGG - Chr3:93809020-93809039 None:intergenic 45.0%
AGAGGCAGTTTAGTGATGAG+AGG + Chr3:93809956-93809975 MsG0380017228.01.T01:intron 45.0%
AGCGGAATTGCAATAGCGTA+TGG + Chr3:93810204-93810223 MsG0380017228.01.T01:intron 45.0%
AGGATTCAGGAGAACAACAC+CGG - Chr3:93812484-93812503 None:intergenic 45.0%
ATCTGCCATCACAGACAAAG+AGG - Chr3:93811632-93811651 None:intergenic 45.0%
ATGGAACAAGGTGTGTTTCG+TGG + Chr3:93808423-93808442 MsG0380017228.01.T01:CDS 45.0%
ATTCGGAAGGAGAACAGGAA+AGG + Chr3:93808463-93808482 MsG0380017228.01.T01:CDS 45.0%
ATTCTGCCCAAAATCCAAGG+GGG - Chr3:93810901-93810920 None:intergenic 45.0%
CAAACACAGTTGACACACCA+AGG - Chr3:93812512-93812531 None:intergenic 45.0%
CAACCATAGCATGATCTCGT+TGG - Chr3:93808832-93808851 None:intergenic 45.0%
CACCAAGGCAATTAGGATTC+AGG - Chr3:93812497-93812516 None:intergenic 45.0%
CAGCATCATGATTCTACTCC+CGG + Chr3:93811547-93811566 MsG0380017228.01.T01:CDS 45.0%
CATTCTGCCCAAAATCCAAG+GGG - Chr3:93810902-93810921 None:intergenic 45.0%
CCAGACGATGACTCTGATTT+AGG + Chr3:93811817-93811836 MsG0380017228.01.T01:CDS 45.0%
CCATTCTGCCCAAAATCCAA+GGG - Chr3:93810903-93810922 None:intergenic 45.0%
CCTAAATCAGAGTCATCGTC+TGG - Chr3:93811820-93811839 None:intergenic 45.0%
CCTCGTGATCAATGTCTTGA+AGG + Chr3:93809896-93809915 MsG0380017228.01.T01:intron 45.0%
CCTTCAAGACATTGATCACG+AGG - Chr3:93809899-93809918 None:intergenic 45.0%
CTATATCCGAATGTCCGATG+AGG - Chr3:93811604-93811623 None:intergenic 45.0%
CTCCTGAATCCTAATTGCCT+TGG + Chr3:93812492-93812511 MsG0380017228.01.T01:three_prime_UTR 45.0%
CTTATGACCGTGCACTTTGA+TGG + Chr3:93811058-93811077 MsG0380017228.01.T01:intron 45.0%
GACGATGACTCTGATTTAGG+GGG + Chr3:93811820-93811839 MsG0380017228.01.T01:CDS 45.0%
GATTCGGAGAGAGTTTGCAA+GGG - Chr3:93808112-93808131 None:intergenic 45.0%
GCCTTGCGGCAAAAAATTGT+AGG - Chr3:93812178-93812197 None:intergenic 45.0%
GCGGAATTGCAATAGCGTAT+GGG + Chr3:93810205-93810224 MsG0380017228.01.T01:intron 45.0%
GGAAAATCCAACCAGGTTTC+AGG - Chr3:93808561-93808580 None:intergenic 45.0%
GGATGATCCTCAACCGAATT+CGG + Chr3:93808446-93808465 MsG0380017228.01.T01:CDS 45.0%
GGGTGAGATATTGGATGGAA+TGG - Chr3:93810875-93810894 None:intergenic 45.0%
GGTTAAAAGTTGGGATCAGG+TGG - Chr3:93807991-93808010 None:intergenic 45.0%
GTGAGGCTATGTTAGGACTT+AGG - Chr3:93810989-93811008 None:intergenic 45.0%
GTTGACACACCAAGGCAATT+AGG - Chr3:93812504-93812523 None:intergenic 45.0%
TATGCATCCTGAAACCTGGT+TGG + Chr3:93808551-93808570 MsG0380017228.01.T01:CDS 45.0%
TCATGGTAGCCAGATCAATG+TGG + Chr3:93811446-93811465 MsG0380017228.01.T01:CDS 45.0%
TCCTGTTCTCCTTCCGAATT+CGG - Chr3:93808462-93808481 None:intergenic 45.0%
TGGAACAAGGTGTGTTTCGT+GGG + Chr3:93808424-93808443 MsG0380017228.01.T01:CDS 45.0%
TTCCTGCATCCACATTGATC+TGG - Chr3:93811458-93811477 None:intergenic 45.0%
TTCGGAAGGAGAACAGGAAA+GGG + Chr3:93808464-93808483 MsG0380017228.01.T01:CDS 45.0%
! ATCAGGTGGGTGTTGCATTA+CGG - Chr3:93807977-93807996 None:intergenic 45.0%
! ATGACGACGGTGATGATGAT+TGG + Chr3:93811794-93811813 MsG0380017228.01.T01:CDS 45.0%
! ATTTGGGGCAACTGTGATGA+AGG - Chr3:93810231-93810250 None:intergenic 45.0%
! CACGACTGAGGTGATTTTAG+GGG + Chr3:93811972-93811991 MsG0380017228.01.T01:three_prime_UTR 45.0%
! CCTTGGATTTTGGGCAGAAT+GGG + Chr3:93810901-93810920 MsG0380017228.01.T01:intron 45.0%
! CTTCCTGGTGTGAATTTTGG+TGG + Chr3:93810654-93810673 MsG0380017228.01.T01:intron 45.0%
! GACACGACTGAGGTGATTTT+AGG + Chr3:93811970-93811989 MsG0380017228.01.T01:three_prime_UTR 45.0%
! GACGAGGAAGATGATAACGA+CGG + Chr3:93808585-93808604 MsG0380017228.01.T01:CDS 45.0%
! GGGTTTGTTTGATTTCGTCG+AGG - Chr3:93808287-93808306 None:intergenic 45.0%
! TAGGTGTCATCTGATAAGCC+GGG - Chr3:93811568-93811587 None:intergenic 45.0%
! TGGTGGATGTAATAGGGTTC+GGG + Chr3:93812450-93812469 MsG0380017228.01.T01:three_prime_UTR 45.0%
!! TTGTTTCTAGGTGAGGTGGT+TGG - Chr3:93808186-93808205 None:intergenic 45.0%
!!! CAATTTTTTGCCGCAAGGCT+AGG + Chr3:93812179-93812198 MsG0380017228.01.T01:three_prime_UTR 45.0%
!!! CCCTACAATTTTTTGCCGCA+AGG + Chr3:93812174-93812193 MsG0380017228.01.T01:three_prime_UTR 45.0%
ACCGAATTCGGAAGGAGAAC+AGG + Chr3:93808458-93808477 MsG0380017228.01.T01:CDS 50.0%
ACTATTGCGGTGGTAGGTAG+CGG + Chr3:93810186-93810205 MsG0380017228.01.T01:intron 50.0%
AGCATGATCTCGTTGGTCCT+CGG - Chr3:93808825-93808844 None:intergenic 50.0%
AGCCAACCCATCAAAGTGCA+CGG - Chr3:93811068-93811087 None:intergenic 50.0%
AGCCAGATCAATGTGGATGC+AGG + Chr3:93811453-93811472 MsG0380017228.01.T01:CDS 50.0%
AGGTGAGGTGGTTGGAGATT+CGG - Chr3:93808178-93808197 None:intergenic 50.0%
ATGAGAGGTTGCTTAGGTCG+TGG + Chr3:93809971-93809990 MsG0380017228.01.T01:intron 50.0%
ATGCGCGGTTGGAATTACTG+AGG + Chr3:93808500-93808519 MsG0380017228.01.T01:CDS 50.0%
CACACGAGAGAGAACTACAG+AGG - Chr3:93809247-93809266 None:intergenic 50.0%
CCCATTCTGCCCAAAATCCA+AGG - Chr3:93810904-93810923 None:intergenic 50.0%
GACATGCCTCATCGGACATT+CGG + Chr3:93811595-93811614 MsG0380017228.01.T01:CDS 50.0%
GAGCCACCAAAATTCACACC+AGG - Chr3:93810660-93810679 None:intergenic 50.0%
GATCCTCAACCGAATTCGGA+AGG + Chr3:93808450-93808469 MsG0380017228.01.T01:CDS 50.0%
GATGAAACGTTGCAAGGTCG+TGG + Chr3:93808249-93808268 MsG0380017228.01.T01:CDS 50.0%
GATTCAGGAGAACAACACCG+GGG - Chr3:93812482-93812501 None:intergenic 50.0%
GGAACAAGGTGTGTTTCGTG+GGG + Chr3:93808425-93808444 MsG0380017228.01.T01:CDS 50.0%
GGACCAACGAGATCATGCTA+TGG + Chr3:93808826-93808845 MsG0380017228.01.T01:CDS 50.0%
GGATTCAGGAGAACAACACC+GGG - Chr3:93812483-93812502 None:intergenic 50.0%
GTGGTATAGCGGCGTTATAC+CGG + Chr3:93810265-93810284 MsG0380017228.01.T01:intron 50.0%
GTTGAGTCGGTGATGACATG+AGG - Chr3:93810017-93810036 None:intergenic 50.0%
TCGCTATGCATCCTGAAACC+TGG + Chr3:93808547-93808566 MsG0380017228.01.T01:CDS 50.0%
TCTCCTTCCGAATTCGGTTG+AGG - Chr3:93808456-93808475 None:intergenic 50.0%
TGAGAGGTTGCTTAGGTCGT+GGG + Chr3:93809972-93809991 MsG0380017228.01.T01:intron 50.0%
! CCCTTGGATTTTGGGCAGAA+TGG + Chr3:93810900-93810919 MsG0380017228.01.T01:intron 50.0%
! CGATTCGGAGAGAGTTTGCA+AGG - Chr3:93808113-93808132 None:intergenic 50.0%
! GGATTTTGGGCAGAATGGGA+TGG + Chr3:93810905-93810924 MsG0380017228.01.T01:intron 50.0%
! TTTTTGCCGCAAGGCTAGGT+GGG + Chr3:93812183-93812202 MsG0380017228.01.T01:three_prime_UTR 50.0%
!! GAAATAGCGGATAACGTGGC+AGG + Chr3:93809586-93809605 MsG0380017228.01.T01:intron 50.0%
!! TGAGGTGATTTTAGGGGCAC+TGG + Chr3:93811978-93811997 MsG0380017228.01.T01:three_prime_UTR 50.0%
!! TGAGGTTTTGTCTACACCCC+AGG + Chr3:93808976-93808995 MsG0380017228.01.T01:CDS 50.0%
!! TTCAAACCCACCTAGCCTTG+CGG - Chr3:93812192-93812211 None:intergenic 50.0%
!!! TTTTTTGCCGCAAGGCTAGG+TGG + Chr3:93812182-93812201 MsG0380017228.01.T01:three_prime_UTR 50.0%
ACCACCACTATTGCGGTGGT+AGG + Chr3:93810180-93810199 MsG0380017228.01.T01:intron 55.0%
ACCTACCACCGCAATAGTGG+TGG - Chr3:93810184-93810203 None:intergenic 55.0%
CGCGGTTGGAATTACTGAGG+AGG + Chr3:93808503-93808522 MsG0380017228.01.T01:CDS 55.0%
GAGAGAAGATGGAGAGGCAG+AGG + Chr3:93809938-93809957 MsG0380017228.01.T01:intron 55.0%
GAGAGGTTGCTTAGGTCGTG+GGG + Chr3:93809973-93809992 MsG0380017228.01.T01:intron 55.0%
GCTACCTACCACCGCAATAG+TGG - Chr3:93810187-93810206 None:intergenic 55.0%
GGTGGGGGTGAGATATTGGA+TGG - Chr3:93810880-93810899 None:intergenic 55.0%
TGCCCAAAATCCAAGGGGGT+GGG - Chr3:93810897-93810916 None:intergenic 55.0%
TGCTTAGGTCGTGGGGTTGA+GGG + Chr3:93809980-93809999 MsG0380017228.01.T01:intron 55.0%
TTGCTTAGGTCGTGGGGTTG+AGG + Chr3:93809979-93809998 MsG0380017228.01.T01:intron 55.0%
! AGGTGGGTGTTGCATTACGG+TGG - Chr3:93807974-93807993 None:intergenic 55.0%
! GACCGTGCACTTTGATGGGT+TGG + Chr3:93811063-93811082 MsG0380017228.01.T01:intron 55.0%
! GCAAGGCTAGGTGGGTTTGA+AGG + Chr3:93812191-93812210 MsG0380017228.01.T01:three_prime_UTR 55.0%
! TAGGGTTCGGGTTTCTACCC+CGG + Chr3:93812462-93812481 MsG0380017228.01.T01:three_prime_UTR 55.0%
AGGGGGTGGGGGTGAGATAT+TGG - Chr3:93810884-93810903 None:intergenic 60.0%
ATATCTCACCCCCACCCCCT+TGG + Chr3:93810884-93810903 MsG0380017228.01.T01:intron 60.0%
CCCAAAATCCAAGGGGGTGG+GGG - Chr3:93810895-93810914 None:intergenic 60.0%
CTGCCCAAAATCCAAGGGGG+TGG - Chr3:93810898-93810917 None:intergenic 60.0%
GCCCAAAATCCAAGGGGGTG+GGG - Chr3:93810896-93810915 None:intergenic 60.0%
GGCAGGGTGACCGACTGATA+AGG + Chr3:93809291-93809310 MsG0380017228.01.T01:intron 60.0%
! ACCCCCACCCCCTTGGATTT+TGG + Chr3:93810891-93810910 MsG0380017228.01.T01:intron 60.0%
! CCCCCACCCCCTTGGATTTT+GGG + Chr3:93810892-93810911 MsG0380017228.01.T01:intron 60.0%
!! AGGGGCACTGGAACCTCACA+CGG + Chr3:93811990-93812009 MsG0380017228.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93807905 93812574 93807905 ID=MsG0380017228.01;Name=MsG0380017228.01
Chr3 mRNA 93807905 93812574 93807905 ID=MsG0380017228.01.T01;Parent=MsG0380017228.01;Name=MsG0380017228.01.T01;_AED=0.41;_eAED=0.41;_QI=182|1|1|1|1|1|3|614|407
Chr3 exon 93807905 93808606 93807905 ID=MsG0380017228.01.T01:exon:1438;Parent=MsG0380017228.01.T01
Chr3 exon 93808810 93808997 93808810 ID=MsG0380017228.01.T01:exon:1439;Parent=MsG0380017228.01.T01
Chr3 exon 93811445 93812574 93811445 ID=MsG0380017228.01.T01:exon:1440;Parent=MsG0380017228.01.T01
Chr3 five_prime_UTR 93807905 93808086 93807905 ID=MsG0380017228.01.T01:five_prime_utr;Parent=MsG0380017228.01.T01
Chr3 CDS 93808087 93808606 93808087 ID=MsG0380017228.01.T01:cds;Parent=MsG0380017228.01.T01
Chr3 CDS 93808810 93808997 93808810 ID=MsG0380017228.01.T01:cds;Parent=MsG0380017228.01.T01
Chr3 CDS 93811445 93811960 93811445 ID=MsG0380017228.01.T01:cds;Parent=MsG0380017228.01.T01
Chr3 three_prime_UTR 93811961 93812574 93811961 ID=MsG0380017228.01.T01:three_prime_utr;Parent=MsG0380017228.01.T01
Gene Sequence

>MsG0380017228.01.T01

ATGTCATCATGGTTTGCTCGTTCCCTTGCAAACTCTCTCCGAATCGATGATGATGATGATGATGGTGACATTCAAAACGACGTCGTAACCGAATCTCCAACCACCTCACCTAGAAACAATAATAATAATGCAGATGAATCAGAAGAACAAGAAGAAAATAATGATGAAACGTTGCAAGGTCGTGGTGTTAAAGAAGACCTCGACGAAATCAAACAAACCCTAACTCGTCAATTTTGGGGTATGGCTTCTTTTCTCGCTCCTCCTCCATCAACTATTTCTCAATCTCAACAACAACAGCAAGTTGATGGCGATGTAATTTCAAATCAAAATTCTGAAATGGAACAAGGTGTGTTTCGTGGGGATGATCCTCAACCGAATTCGGAAGGAGAACAGGAAAGGGAATTTGATATACAATGCGCGGTTGGAATTACTGAGGAGGTTTTGACTTTTGCAATGAATATCGCTATGCATCCTGAAACCTGGTTGGATTTTCCAATTGACGAGGAAGATGATAACGACGATTTTGAAATGTCCGAGGACCAACGAGATCATGCTATGGTTGTTGAAAGGCTTGCTCCGAGATTAGCTGCACTAAGAATTGAATTGTGCCCTTGTCATATGAGTGAAAGTTACTTTTGGAAAGTCTATTTTGTACTTTTGCATTCAAGGCTTAATAAACAAGATTCTGAGGTTTTGTCTACACCCCAGGTCATGGTAGCCAGATCAATGTGGATGCAGGAATTGCAGAAACAAACAAAGCCTGAATTTGAAATTTTCGGAAGAAGTGATCTCTACTCAAGAGACAATGCTCAGCATCATGATTCTACTCCCGGCTTATCAGATGACACCTATTCTGATGACATGCCTCATCGGACATTCGGATATAGAACAACCTCTTTGTCTGTGATGGCAGATAATGAGTCTGAAAAGTACACAATTGAATGTTCTGGATCACATTTATCAGATAAGTCGGTTATTGAGGAAAATCCAAGTAATAAAACTGAAAACAAAGATCTAAAAAGTGGTCGAGCTTCTCAAATTATGATTCAGGACTATGATGACGACGGTGATGATGATTGGCCAGACGATGACTCTGATTTAGGGGGATATAGTGGAACAGCACTCCCTATTGTGAATGAAGAAGATATATCTTTCAGCGATCTCGAGGATGATGATTATGGCATTAAACATGTTAGTAGCAATTCAGATTCAAAGGTGGTGTGA

Protein sequence

>MsG0380017228.01.T01

MSSWFARSLANSLRIDDDDDDGDIQNDVVTESPTTSPRNNNNNADESEEQEENNDETLQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPSTISQSQQQQQVDGDVISNQNSEMEQGVFRGDDPQPNSEGEQEREFDIQCAVGITEEVLTFAMNIAMHPETWLDFPIDEEDDNDDFEMSEDQRDHAMVVERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDSEVLSTPQVMVARSMWMQELQKQTKPEFEIFGRSDLYSRDNAQHHDSTPGLSDDTYSDDMPHRTFGYRTTSLSVMADNESEKYTIECSGSHLSDKSVIEENPSNKTENKDLKSGRASQIMIQDYDDDGDDDWPDDDSDLGGYSGTALPIVNEEDISFSDLEDDDYGIKHVSSNSDSKVV*