Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011413.01.T01 | XP_003597923.2 | 90.526 | 190 | 17 | 1 | 1 | 189 | 260 | 449 | 8.64E-118 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011413.01.T01 | P49972 | 72.778 | 180 | 49 | 0 | 1 | 180 | 260 | 439 | 3.22E-92 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011413.01.T01 | G7II87 | 90.526 | 190 | 17 | 1 | 1 | 189 | 260 | 449 | 4.13e-118 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000806.01 | MsG0280011413.01 | 0.800970 | 1.122338e-48 | 5.297237e-46 |
| MsG0180005205.01 | MsG0280011413.01 | 0.800111 | 1.679613e-48 | 7.756060e-46 |
| MsG0180005786.01 | MsG0280011413.01 | 0.812102 | 5.018642e-51 | 3.162123e-48 |
| MsG0280011109.01 | MsG0280011413.01 | 0.813881 | 2.045148e-51 | 1.351720e-48 |
| MsG0280011413.01 | MsG0380016923.01 | 0.805137 | 1.543327e-49 | 8.102302e-47 |
| MsG0280011413.01 | MsG0480021724.01 | 0.810826 | 9.502010e-51 | 5.787519e-48 |
| MsG0280011413.01 | MsG0580025903.01 | 0.830799 | 2.395355e-55 | 2.550704e-52 |
| MsG0280011413.01 | MsG0580026460.01 | 0.802026 | 6.820428e-49 | 3.306049e-46 |
| MsG0280011413.01 | MsG0580028918.01 | 0.804342 | 2.262027e-49 | 1.163429e-46 |
| MsG0280011413.01 | MsG0580029376.01 | 0.813451 | 2.542489e-51 | 1.661047e-48 |
| MsG0280011413.01 | MsG0680030413.01 | 0.818444 | 1.953522e-52 | 1.462725e-49 |
| MsG0280011413.01 | MsG0680034235.01 | 0.808484 | 3.028152e-50 | 1.733530e-47 |
| MsG0280011413.01 | MsG0780041482.01 | 0.805913 | 1.060919e-49 | 5.681868e-47 |
| MsG0280011413.01 | MsG0880047764.01 | 0.805378 | 1.373922e-49 | 7.257620e-47 |
| MsG0280006461.01 | MsG0280011413.01 | 0.802067 | 6.689538e-49 | 3.246010e-46 |
| MsG0280007527.01 | MsG0280011413.01 | 0.801644 | 8.171220e-49 | 3.922485e-46 |
| MsG0280008114.01 | MsG0280011413.01 | 0.806512 | 7.935186e-50 | 4.315142e-47 |
| MsG0280008738.01 | MsG0280011413.01 | 0.812103 | 5.017056e-51 | 3.161185e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011413.01.T01 | MTR_2g104050 | 90.526 | 190 | 17 | 1 | 1 | 189 | 260 | 449 | 1.05e-121 | 352 |
| MsG0280011413.01.T01 | MTR_4g010050 | 72.778 | 180 | 49 | 0 | 1 | 180 | 260 | 439 | 4.27e-92 | 277 |
| MsG0280011413.01.T01 | MTR_7g085470 | 69.388 | 49 | 15 | 0 | 3 | 51 | 243 | 291 | 7.67e-15 | 71.6 |
| MsG0280011413.01.T01 | MTR_7g085570 | 65.385 | 52 | 18 | 0 | 6 | 57 | 211 | 262 | 7.76e-15 | 71.2 |
| MsG0280011413.01.T01 | MTR_7g104890 | 28.105 | 153 | 104 | 3 | 10 | 160 | 334 | 482 | 1.14e-11 | 63.2 |
| MsG0280011413.01.T01 | MTR_7g104890 | 28.105 | 153 | 104 | 3 | 10 | 160 | 201 | 349 | 1.15e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011413.01.T01 | AT1G48900 | 70.166 | 181 | 54 | 0 | 1 | 181 | 260 | 440 | 7.73e-91 | 274 |
| MsG0280011413.01.T01 | AT1G48900 | 74.214 | 159 | 41 | 0 | 1 | 159 | 260 | 418 | 6.34e-85 | 257 |
| MsG0280011413.01.T01 | AT5G49500 | 66.292 | 178 | 60 | 0 | 1 | 178 | 140 | 317 | 6.77e-85 | 255 |
| MsG0280011413.01.T01 | AT5G49500 | 66.292 | 178 | 60 | 0 | 1 | 178 | 262 | 439 | 1.57e-83 | 255 |
| MsG0280011413.01.T01 | AT1G15310 | 65.169 | 178 | 61 | 1 | 1 | 178 | 260 | 436 | 8.29e-80 | 245 |
| MsG0280011413.01.T01 | AT5G03940 | 29.412 | 153 | 102 | 3 | 10 | 160 | 344 | 492 | 1.00e-11 | 63.2 |
Find 47 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGAAGTGTTGGAGTTAA+TGG | 0.152094 | 2:+83657157 | MsG0280011413.01.T01:CDS |
| ATTTCAGAACACACTTAAAA+TGG | 0.161983 | 2:+83656412 | MsG0280011413.01.T01:CDS |
| GTAGTTTGTTTCTATGCTTC+CGG | 0.256170 | 2:+83656845 | MsG0280011413.01.T01:intron |
| CCGTTTGTTAGTCGTCTATT+AGG | 0.289020 | 2:+83656157 | MsG0280011413.01.T01:CDS |
| GAGGTTCTGGTCGTCTAGTT+AGG | 0.294573 | 2:+83657138 | MsG0280011413.01.T01:CDS |
| ATGCGAATAGCTCGAGGTTC+TGG | 0.323121 | 2:+83657125 | MsG0280011413.01.T01:CDS |
| CGTGATTCGTTAATGAGCTT+TGG | 0.328551 | 2:-83657098 | None:intergenic |
| TAGTTTGTTTCTATGCTTCC+GGG | 0.338723 | 2:+83656846 | MsG0280011413.01.T01:intron |
| AAGAGTCCTGTCATATTCAT+AGG | 0.340114 | 2:+83656091 | MsG0280011413.01.T01:CDS |
| GTGATTCGTTAATGAGCTTT+GGG | 0.363405 | 2:-83657097 | None:intergenic |
| ATGGCCTTGTGGTATTAATT+CGG | 0.399420 | 2:-83656877 | None:intergenic |
| CACACTTAAAATGGGTCCTA+TGG | 0.415698 | 2:+83656421 | MsG0280011413.01.T01:CDS |
| GGGTTAATAGACAAATTTCA+TGG | 0.432322 | 2:+83656308 | MsG0280011413.01.T01:CDS |
| TTTCAGAACACACTTAAAAT+GGG | 0.451450 | 2:+83656413 | MsG0280011413.01.T01:CDS |
| AGTTGTTCCGATGGATCAAC+AGG | 0.459983 | 2:+83656331 | MsG0280011413.01.T01:CDS |
| TTGCCGAGCCTTCATTCTCA+TGG | 0.461669 | 2:-83656896 | None:intergenic |
| AGGTTCTGGTCGTCTAGTTA+GGG | 0.481539 | 2:+83657139 | MsG0280011413.01.T01:CDS |
| ATGGATTCAATGACAAATGA+AGG | 0.486913 | 2:+83656942 | MsG0280011413.01.T01:CDS |
| CCAAATGGCTTCAGCAAATG+TGG | 0.495885 | 2:-83657259 | None:intergenic |
| GGCTTCAGCAAATGTGGAGG+GGG | 0.498686 | 2:-83657253 | None:intergenic |
| TAAGCGTTACATGACAATGA+TGG | 0.521435 | 2:+83656923 | MsG0280011413.01.T01:CDS |
| ATTAATTCGGAACTAAATCC+CGG | 0.529524 | 2:-83656864 | None:intergenic |
| ACACTTAAAATGGGTCCTAT+GGG | 0.536538 | 2:+83656422 | MsG0280011413.01.T01:CDS |
| CATAGGGACTGGTGAACATA+CGG | 0.540334 | 2:+83656108 | MsG0280011413.01.T01:CDS |
| GGGGATTTGACCATGTCCTG+TGG | 0.544237 | 2:-83657233 | None:intergenic |
| ATCTCAAAGTAGAAATCCAC+AGG | 0.544835 | 2:+83657217 | MsG0280011413.01.T01:CDS |
| CCTAATAGACGACTAACAAA+CGG | 0.558547 | 2:-83656157 | None:intergenic |
| ATTTCATGGAGTTGTTCCGA+TGG | 0.562305 | 2:+83656322 | MsG0280011413.01.T01:CDS |
| CCACAAGGCCATGAGAATGA+AGG | 0.563190 | 2:+83656888 | MsG0280011413.01.T01:CDS |
| CCTGTCATATTCATAGGGAC+TGG | 0.565994 | 2:+83656097 | MsG0280011413.01.T01:CDS |
| CCAGTCCCTATGAATATGAC+AGG | 0.568654 | 2:-83656097 | None:intergenic |
| ATGGCTTCAGCAAATGTGGA+GGG | 0.568929 | 2:-83657255 | None:intergenic |
| AGAGTCCTGTCATATTCATA+GGG | 0.573977 | 2:+83656092 | MsG0280011413.01.T01:CDS |
| CCTTCATTCTCATGGCCTTG+TGG | 0.576175 | 2:-83656888 | None:intergenic |
| TCGTCTAGTTAGGGAAGTGT+TGG | 0.580446 | 2:+83657148 | MsG0280011413.01.T01:CDS |
| AAGGTAATAACCTCGCCCAT+AGG | 0.588423 | 2:-83656437 | None:intergenic |
| AGATCAGCCTGTTGATCCAT+CGG | 0.589582 | 2:-83656338 | None:intergenic |
| AAGTAGAAATCCACAGGACA+TGG | 0.595273 | 2:+83657223 | MsG0280011413.01.T01:CDS |
| TAAAATGGGTCCTATGGGCG+AGG | 0.597033 | 2:+83656427 | MsG0280011413.01.T01:CDS |
| AGGCCATGAGAATGAAGGCT+CGG | 0.599947 | 2:+83656893 | MsG0280011413.01.T01:CDS |
| TTGCTCATACATAATCCTCA+AGG | 0.613083 | 2:-83656390 | None:intergenic |
| CAAAAGGAAACTTCACCTTG+AGG | 0.626777 | 2:+83656375 | MsG0280011413.01.T01:CDS |
| TGGCTTCAGCAAATGTGGAG+GGG | 0.636036 | 2:-83657254 | None:intergenic |
| AATGGCTTCAGCAAATGTGG+AGG | 0.645573 | 2:-83657256 | None:intergenic |
| GCTTCAGCAAATGTGGAGGG+GGG | 0.653515 | 2:-83657252 | None:intergenic |
| CGTATGATGCGAATAGCTCG+AGG | 0.677383 | 2:+83657119 | MsG0280011413.01.T01:CDS |
| AGTTCCGAATTAATACCACA+AGG | 0.679425 | 2:+83656873 | MsG0280011413.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTGTTATATTGTATT+GGG | + | Chr2:83656673-83656692 | MsG0280011413.01.T01:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | Chr2:83656672-83656691 | MsG0280011413.01.T01:intron | 15.0% |
| !! | TTTCTATATTTATAGGAATT+TGG | - | Chr2:83656239-83656258 | None:intergenic | 15.0% |
| !!! | AAATTTTAATCATTGTCAAA+TGG | + | Chr2:83656256-83656275 | MsG0280011413.01.T01:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | Chr2:83656608-83656627 | MsG0280011413.01.T01:intron | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | Chr2:83656607-83656626 | MsG0280011413.01.T01:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | Chr2:83656632-83656651 | MsG0280011413.01.T01:intron | 20.0% |
| !! | TGTTTCTCTATTATATATCA+AGG | + | Chr2:83656199-83656218 | MsG0280011413.01.T01:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | Chr2:83656609-83656628 | MsG0280011413.01.T01:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | Chr2:83656742-83656761 | MsG0280011413.01.T01:intron | 20.0% |
| !!! | TGTTTTATTTGACTGATTTT+CGG | + | Chr2:83656813-83656832 | MsG0280011413.01.T01:intron | 20.0% |
| ! | ATAGTCAACGAAACATAATA+AGG | - | Chr2:83656459-83656478 | None:intergenic | 25.0% |
| ! | ATTTCAGAACACACTTAAAA+TGG | + | Chr2:83656412-83656431 | MsG0280011413.01.T01:CDS | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | Chr2:83656631-83656650 | MsG0280011413.01.T01:intron | 25.0% |
| ! | GAGTAGTAATTAACTAATAG+GGG | + | Chr2:83656786-83656805 | MsG0280011413.01.T01:intron | 25.0% |
| ! | GCATAAATATTGTATGCATA+AGG | - | Chr2:83657000-83657019 | None:intergenic | 25.0% |
| ! | GGAGTAGTAATTAACTAATA+GGG | + | Chr2:83656785-83656804 | MsG0280011413.01.T01:intron | 25.0% |
| ! | TATTATATATCAAGGAGTAG+CGG | + | Chr2:83656207-83656226 | MsG0280011413.01.T01:intron | 25.0% |
| ! | TTTCAGAACACACTTAAAAT+GGG | + | Chr2:83656413-83656432 | MsG0280011413.01.T01:CDS | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | Chr2:83656719-83656738 | MsG0280011413.01.T01:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | Chr2:83656741-83656760 | MsG0280011413.01.T01:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | + | Chr2:83656720-83656739 | MsG0280011413.01.T01:intron | 25.0% |
| AAGCACTTACTAGTATCTTA+TGG | - | Chr2:83656520-83656539 | None:intergenic | 30.0% | |
| AATTAATGACGTTTCAGAGT+TGG | + | Chr2:83657064-83657083 | MsG0280011413.01.T01:intron | 30.0% | |
| ATGGATTCAATGACAAATGA+AGG | + | Chr2:83656942-83656961 | MsG0280011413.01.T01:CDS | 30.0% | |
| ATTAATTCGGAACTAAATCC+CGG | - | Chr2:83656867-83656886 | None:intergenic | 30.0% | |
| CTTGTTCAAAAACTGTCAAA+AGG | + | Chr2:83656359-83656378 | MsG0280011413.01.T01:CDS | 30.0% | |
| GGGAGTAGTAATTAACTAAT+AGG | + | Chr2:83656784-83656803 | MsG0280011413.01.T01:intron | 30.0% | |
| GGGTTAATAGACAAATTTCA+TGG | + | Chr2:83656308-83656327 | MsG0280011413.01.T01:CDS | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | Chr2:83656616-83656635 | MsG0280011413.01.T01:intron | 30.0% | |
| ! | AGTTTACAAACGTTTTGCAA+AGG | + | Chr2:83657181-83657200 | MsG0280011413.01.T01:CDS | 30.0% |
| AAGAGTCCTGTCATATTCAT+AGG | + | Chr2:83656091-83656110 | MsG0280011413.01.T01:CDS | 35.0% | |
| ACACTTAAAATGGGTCCTAT+GGG | + | Chr2:83656422-83656441 | MsG0280011413.01.T01:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | Chr2:83656755-83656774 | MsG0280011413.01.T01:intron | 35.0% | |
| AGAGTCCTGTCATATTCATA+GGG | + | Chr2:83656092-83656111 | MsG0280011413.01.T01:CDS | 35.0% | |
| AGTTCCGAATTAATACCACA+AGG | + | Chr2:83656873-83656892 | MsG0280011413.01.T01:CDS | 35.0% | |
| ATCTCAAAGTAGAAATCCAC+AGG | + | Chr2:83657217-83657236 | MsG0280011413.01.T01:CDS | 35.0% | |
| CAAAGTAGGTCAATTAAACC+GGG | - | Chr2:83656572-83656591 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTAAAC+CGG | - | Chr2:83656573-83656592 | None:intergenic | 35.0% | |
| CCTAATAGACGACTAACAAA+CGG | - | Chr2:83656160-83656179 | None:intergenic | 35.0% | |
| GTGATTCGTTAATGAGCTTT+GGG | - | Chr2:83657100-83657119 | None:intergenic | 35.0% | |
| TAAGCGTTACATGACAATGA+TGG | + | Chr2:83656923-83656942 | MsG0280011413.01.T01:CDS | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | Chr2:83656586-83656605 | None:intergenic | 35.0% | |
| TTGCTCATACATAATCCTCA+AGG | - | Chr2:83656393-83656412 | None:intergenic | 35.0% | |
| ! | TGTCAAATGGCTTTTGAACT+AGG | + | Chr2:83656269-83656288 | MsG0280011413.01.T01:intron | 35.0% |
| !! | ATGGCCTTGTGGTATTAATT+CGG | - | Chr2:83656880-83656899 | None:intergenic | 35.0% |
| !! | GTAGTTTGTTTCTATGCTTC+CGG | + | Chr2:83656845-83656864 | MsG0280011413.01.T01:intron | 35.0% |
| !! | TAGTTTGTTTCTATGCTTCC+GGG | + | Chr2:83656846-83656865 | MsG0280011413.01.T01:intron | 35.0% |
| AAGTAGAAATCCACAGGACA+TGG | + | Chr2:83657223-83657242 | MsG0280011413.01.T01:CDS | 40.0% | |
| ATTTCATGGAGTTGTTCCGA+TGG | + | Chr2:83656322-83656341 | MsG0280011413.01.T01:CDS | 40.0% | |
| CAAAAGGAAACTTCACCTTG+AGG | + | Chr2:83656375-83656394 | MsG0280011413.01.T01:CDS | 40.0% | |
| CACACTTAAAATGGGTCCTA+TGG | + | Chr2:83656421-83656440 | MsG0280011413.01.T01:CDS | 40.0% | |
| CCGGTTTAATTGACCTACTT+TGG | + | Chr2:83656570-83656589 | MsG0280011413.01.T01:intron | 40.0% | |
| CGTGATTCGTTAATGAGCTT+TGG | - | Chr2:83657101-83657120 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | Chr2:83656756-83656775 | MsG0280011413.01.T01:intron | 40.0% | |
| ! | AATGGCTTTTGAACTAGGCA+TGG | + | Chr2:83656274-83656293 | MsG0280011413.01.T01:intron | 40.0% |
| ! | ATGGCTTTTGAACTAGGCAT+GGG | + | Chr2:83656275-83656294 | MsG0280011413.01.T01:intron | 40.0% |
| ! | CCGTTTGTTAGTCGTCTATT+AGG | + | Chr2:83656157-83656176 | MsG0280011413.01.T01:CDS | 40.0% |
| !! | TAGGGAAGTGTTGGAGTTAA+TGG | + | Chr2:83657157-83657176 | MsG0280011413.01.T01:CDS | 40.0% |
| AAGGTAATAACCTCGCCCAT+AGG | - | Chr2:83656440-83656459 | None:intergenic | 45.0% | |
| AGATCAGCCTGTTGATCCAT+CGG | - | Chr2:83656341-83656360 | None:intergenic | 45.0% | |
| AGTTGTTCCGATGGATCAAC+AGG | + | Chr2:83656331-83656350 | MsG0280011413.01.T01:CDS | 45.0% | |
| CCAGTCCCTATGAATATGAC+AGG | - | Chr2:83656100-83656119 | None:intergenic | 45.0% | |
| CCTGTCATATTCATAGGGAC+TGG | + | Chr2:83656097-83656116 | MsG0280011413.01.T01:CDS | 45.0% | |
| GTAGGTCAATTAAACCGGGA+CGG | - | Chr2:83656568-83656587 | None:intergenic | 45.0% | |
| TCTATATACTACCTCCGTCC+CGG | + | Chr2:83656551-83656570 | MsG0280011413.01.T01:intron | 45.0% | |
| ! | AGGTTCTGGTCGTCTAGTTA+GGG | + | Chr2:83657139-83657158 | MsG0280011413.01.T01:CDS | 45.0% |
| ! | CATAGGGACTGGTGAACATA+CGG | + | Chr2:83656108-83656127 | MsG0280011413.01.T01:CDS | 45.0% |
| ! | TCGTCTAGTTAGGGAAGTGT+TGG | + | Chr2:83657148-83657167 | MsG0280011413.01.T01:CDS | 45.0% |
| ! | TGGCTTTTGAACTAGGCATG+GGG | + | Chr2:83656276-83656295 | MsG0280011413.01.T01:intron | 45.0% |
| !! | ATTAAAATTTCTATATTTAT+AGG | - | Chr2:83656246-83656265 | None:intergenic | 5.0% |
| AATTACTACTCCCTCCGTCC+CGG | - | Chr2:83656777-83656796 | None:intergenic | 50.0% | |
| AGGCCATGAGAATGAAGGCT+CGG | + | Chr2:83656893-83656912 | MsG0280011413.01.T01:CDS | 50.0% | |
| ATGCGAATAGCTCGAGGTTC+TGG | + | Chr2:83657125-83657144 | MsG0280011413.01.T01:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | Chr2:83656760-83656779 | MsG0280011413.01.T01:intron | 50.0% | |
| CCACAAGGCCATGAGAATGA+AGG | + | Chr2:83656888-83656907 | MsG0280011413.01.T01:CDS | 50.0% | |
| CGTATGATGCGAATAGCTCG+AGG | + | Chr2:83657119-83657138 | MsG0280011413.01.T01:CDS | 50.0% | |
| TAAAATGGGTCCTATGGGCG+AGG | + | Chr2:83656427-83656446 | MsG0280011413.01.T01:CDS | 50.0% | |
| TTGCCGAGCCTTCATTCTCA+TGG | - | Chr2:83656899-83656918 | None:intergenic | 50.0% | |
| ! | CCTTCATTCTCATGGCCTTG+TGG | - | Chr2:83656891-83656910 | None:intergenic | 50.0% |
| ! | GAGGTTCTGGTCGTCTAGTT+AGG | + | Chr2:83657138-83657157 | MsG0280011413.01.T01:CDS | 50.0% |
| ! | GGCTTTTGAACTAGGCATGG+GGG | + | Chr2:83656277-83656296 | MsG0280011413.01.T01:intron | 50.0% |
| GGGGATTTGACCATGTCCTG+TGG | - | Chr2:83657236-83657255 | None:intergenic | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | - | Chr2:83656565-83656584 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | Chr2:83656764-83656783 | MsG0280011413.01.T01:intron | 55.0% | |
| TAGGCATGGGGGACTTGTCT+GGG | + | Chr2:83656288-83656307 | MsG0280011413.01.T01:intron | 55.0% | |
| CTAGGCATGGGGGACTTGTC+TGG | + | Chr2:83656287-83656306 | MsG0280011413.01.T01:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | Chr2:83656763-83656782 | MsG0280011413.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 83656070 | 83657271 | 83656070 | ID=MsG0280011413.01;Name=MsG0280011413.01 |
| Chr2 | mRNA | 83656070 | 83657271 | 83656070 | ID=MsG0280011413.01.T01;Parent=MsG0280011413.01;Name=MsG0280011413.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|4|0|190 |
| Chr2 | exon | 83656070 | 83656178 | 83656070 | ID=MsG0280011413.01.T01:exon:12790;Parent=MsG0280011413.01.T01 |
| Chr2 | exon | 83656291 | 83656448 | 83656291 | ID=MsG0280011413.01.T01:exon:12791;Parent=MsG0280011413.01.T01 |
| Chr2 | exon | 83656849 | 83656963 | 83656849 | ID=MsG0280011413.01.T01:exon:12792;Parent=MsG0280011413.01.T01 |
| Chr2 | exon | 83657081 | 83657271 | 83657081 | ID=MsG0280011413.01.T01:exon:12793;Parent=MsG0280011413.01.T01 |
| Chr2 | CDS | 83656070 | 83656178 | 83656070 | ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01 |
| Chr2 | CDS | 83656291 | 83656448 | 83656291 | ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01 |
| Chr2 | CDS | 83656849 | 83656963 | 83656849 | ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01 |
| Chr2 | CDS | 83657081 | 83657271 | 83657081 | ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01 |
| Gene Sequence |
| Protein sequence |
