AlfalfaGEDB | MsG0280011413.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011413.01

KEGG: K03106
GO: GO:0005525 GO:0006614 GO:0008312 GO:0048500
PFAM: PF00448 PF02978

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011413.01.T01	XP_003597923.2	90.526	190	17	1	1	189	260	449	8.64E-118	352

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011413.01.T01	P49972	72.778	180	49	0	1	180	260	439	3.22E-92	280

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011413.01.T01	G7II87	90.526	190	17	1	1	189	260	449	4.13e-118	352

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000806.01	MsG0280011413.01	0.800970	1.122338e-48	5.297237e-46
MsG0180005205.01	MsG0280011413.01	0.800111	1.679613e-48	7.756060e-46
MsG0180005786.01	MsG0280011413.01	0.812102	5.018642e-51	3.162123e-48
MsG0280006461.01	MsG0280011413.01	0.802067	6.689538e-49	3.246010e-46
MsG0280007527.01	MsG0280011413.01	0.801644	8.171220e-49	3.922485e-46
MsG0280008114.01	MsG0280011413.01	0.806512	7.935186e-50	4.315142e-47
MsG0280008738.01	MsG0280011413.01	0.812103	5.017056e-51	3.161185e-48
MsG0280011109.01	MsG0280011413.01	0.813881	2.045148e-51	1.351720e-48
MsG0280011413.01	MsG0380016923.01	0.805137	1.543327e-49	8.102302e-47
MsG0280011413.01	MsG0480021724.01	0.810826	9.502010e-51	5.787519e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011413.01.T01	MTR_2g104050	90.526	190	17	1	1	189	260	449	1.05e-121	352
MsG0280011413.01.T01	MTR_4g010050	72.778	180	49	0	1	180	260	439	4.27e-92	277
MsG0280011413.01.T01	MTR_7g085470	69.388	49	15	0	3	51	243	291	7.67e-15	71.6
MsG0280011413.01.T01	MTR_7g085570	65.385	52	18	0	6	57	211	262	7.76e-15	71.2
MsG0280011413.01.T01	MTR_7g104890	28.105	153	104	3	10	160	334	482	1.14e-11	63.2
MsG0280011413.01.T01	MTR_7g104890	28.105	153	104	3	10	160	201	349	1.15e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011413.01.T01	AT1G48900	70.166	181	54	0	1	181	260	440	7.73e-91	274
MsG0280011413.01.T01	AT1G48900	74.214	159	41	0	1	159	260	418	6.34e-85	257
MsG0280011413.01.T01	AT5G49500	66.292	178	60	0	1	178	140	317	6.77e-85	255
MsG0280011413.01.T01	AT5G49500	66.292	178	60	0	1	178	262	439	1.57e-83	255
MsG0280011413.01.T01	AT1G15310	65.169	178	61	1	1	178	260	436	8.29e-80	245
MsG0280011413.01.T01	AT5G03940	29.412	153	102	3	10	160	344	492	1.00e-11	63.2

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Find 47 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGTCCTGTCATATTCAT+AGG	0.340114	2:+83656091	MsG0280011413.01.T01:CDS
AAGGTAATAACCTCGCCCAT+AGG	0.588423	2:-83656437	None:intergenic
AAGTAGAAATCCACAGGACA+TGG	0.595273	2:+83657223	MsG0280011413.01.T01:CDS
AATGGCTTCAGCAAATGTGG+AGG	0.645573	2:-83657256	None:intergenic
ACACTTAAAATGGGTCCTAT+GGG	0.536538	2:+83656422	MsG0280011413.01.T01:CDS
AGAGTCCTGTCATATTCATA+GGG	0.573977	2:+83656092	MsG0280011413.01.T01:CDS
AGATCAGCCTGTTGATCCAT+CGG	0.589582	2:-83656338	None:intergenic
AGGCCATGAGAATGAAGGCT+CGG	0.599947	2:+83656893	MsG0280011413.01.T01:CDS
AGGTTCTGGTCGTCTAGTTA+GGG	0.481539	2:+83657139	MsG0280011413.01.T01:CDS
AGTTCCGAATTAATACCACA+AGG	0.679425	2:+83656873	MsG0280011413.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCACTTACTAGTATCTTA+TGG	-	Chr2:83656520-83656539	None:intergenic	30.0%
AATTAATGACGTTTCAGAGT+TGG	+	Chr2:83657064-83657083	MsG0280011413.01.T01:intron	30.0%
ATGGATTCAATGACAAATGA+AGG	+	Chr2:83656942-83656961	MsG0280011413.01.T01:CDS	30.0%
ATTAATTCGGAACTAAATCC+CGG	-	Chr2:83656867-83656886	None:intergenic	30.0%
CTTGTTCAAAAACTGTCAAA+AGG	+	Chr2:83656359-83656378	MsG0280011413.01.T01:CDS	30.0%
GGGAGTAGTAATTAACTAAT+AGG	+	Chr2:83656784-83656803	MsG0280011413.01.T01:intron	30.0%
GGGTTAATAGACAAATTTCA+TGG	+	Chr2:83656308-83656327	MsG0280011413.01.T01:CDS	30.0%
TGTATAAATAAAGGGGAAAG+TGG	+	Chr2:83656616-83656635	MsG0280011413.01.T01:intron	30.0%
AAGAGTCCTGTCATATTCAT+AGG	+	Chr2:83656091-83656110	MsG0280011413.01.T01:CDS	35.0%
ACACTTAAAATGGGTCCTAT+GGG	+	Chr2:83656422-83656441	MsG0280011413.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	83656070	83657271	83656070	ID=MsG0280011413.01;Name=MsG0280011413.01
Chr2	mRNA	83656070	83657271	83656070	ID=MsG0280011413.01.T01;Parent=MsG0280011413.01;Name=MsG0280011413.01.T01;_AED=0.48;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|4\|0\|190
Chr2	exon	83656070	83656178	83656070	ID=MsG0280011413.01.T01:exon:12790;Parent=MsG0280011413.01.T01
Chr2	exon	83656291	83656448	83656291	ID=MsG0280011413.01.T01:exon:12791;Parent=MsG0280011413.01.T01
Chr2	exon	83656849	83656963	83656849	ID=MsG0280011413.01.T01:exon:12792;Parent=MsG0280011413.01.T01
Chr2	exon	83657081	83657271	83657081	ID=MsG0280011413.01.T01:exon:12793;Parent=MsG0280011413.01.T01
Chr2	CDS	83656070	83656178	83656070	ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01
Chr2	CDS	83656291	83656448	83656291	ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01
Chr2	CDS	83656849	83656963	83656849	ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01
Chr2	CDS	83657081	83657271	83657081	ID=MsG0280011413.01.T01:cds;Parent=MsG0280011413.01.T01

Gene Sequence

>MsG0280011413.01.T01

ATGTGCAGTGTTGCAGCAACAAAGAGTCCTGTCATATTCATAGGGACTGGTGAACATACGGATCAGTTTGAAGTATTCGAAGTTCAGCCGTTTGTTAGTCGTCTATTAGGCATGGGGGACTTGTCTGGGTTAATAGACAAATTTCATGGAGTTGTTCCGATGGATCAACAGGCTGATCTTGTTCAAAAACTGTCAAAAGGAAACTTCACCTTGAGGATTATGTATGAGCAATTTCAGAACACACTTAAAATGGGTCCTATGGGCGAGTTTGTTTCTATGCTTCCGGGATTTAGTTCCGAATTAATACCACAAGGCCATGAGAATGAAGGCTCGGCAAAACTTAAGCGTTACATGACAATGATGGATTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTCATTAACGAATCACGTATGATGCGAATAGCTCGAGGTTCTGGTCGTCTAGTTAGGGAAGTGTTGGAGTTAATGGAAGTTTACAAACGTTTTGCAAAGGCGTTCAGTAAGCTATCTCAAAGTAGAAATCCACAGGACATGGTCAAATCCCCCCTCCACATTTGCTGA

Protein sequence

>MsG0280011413.01.T01

MCSVAATKSPVIFIGTGEHTDQFEVFEVQPFVSRLLGMGDLSGLIDKFHGVVPMDQQADLVQKLSKGNFTLRIMYEQFQNTLKMGPMGEFVSMLPGFSSELIPQGHENEGSAKLKRYMTMMDSMTNEELDSSNPKLINESRMMRIARGSGRLVREVLELMEVYKRFAKAFSKLSQSRNPQDMVKSPLHIC*