AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026460.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026460.01.T01 MTR_5g044530 95.050 101 5 0 1 101 1 101 7.81e-69 207
MsG0580026460.01.T01 MTR_4g083070 76.768 99 22 1 1 99 1 98 3.69e-52 163
MsG0580026460.01.T01 MTR_4g109490 56.322 87 37 1 13 99 15 100 1.92e-28 103
MsG0580026460.01.T01 MTR_8g085390 45.361 97 53 0 3 99 11 107 8.04e-25 93.2
MsG0580026460.01.T01 MTR_4g132280 42.553 94 50 2 13 102 373 466 1.22e-23 94.7
MsG0580026460.01.T01 MTR_5g097420 40.367 109 61 2 1 105 9 117 2.84e-23 87.4
MsG0580026460.01.T01 MTR_1g084820 49.383 81 40 1 19 99 417 496 2.07e-22 91.3
MsG0580026460.01.T01 MTR_1g084820 49.383 81 40 1 19 99 417 496 2.99e-22 90.9
MsG0580026460.01.T01 MTR_3g082080 54.167 72 33 0 20 91 155 226 2.07e-21 85.9
MsG0580026460.01.T01 MTR_8g085400 40.196 102 58 1 1 102 12 110 3.47e-21 82.0
MsG0580026460.01.T01 MTR_1g116870 44.828 87 45 1 19 102 273 359 6.73e-21 86.3
MsG0580026460.01.T01 MTR_8g089400 42.529 87 49 1 14 99 49 135 1.13e-19 79.7
MsG0580026460.01.T01 MTR_8g089400 42.529 87 49 1 14 99 29 115 1.66e-19 79.0
MsG0580026460.01.T01 MTR_4g133735 41.053 95 53 2 8 99 12 106 2.01e-19 77.4
MsG0580026460.01.T01 MTR_4g133730 37.755 98 60 1 3 99 9 106 3.57e-19 77.0
MsG0580026460.01.T01 MTR_8g085440 38.000 100 61 1 1 99 10 109 8.05e-19 75.9
MsG0580026460.01.T01 MTR_1g022160 45.455 88 48 0 14 101 383 470 1.33e-18 80.1
MsG0580026460.01.T01 MTR_2g049670 40.816 98 54 2 22 116 158 254 1.50e-18 79.3
MsG0580026460.01.T01 MTR_1g022160 42.000 100 57 1 14 113 383 481 2.05e-18 79.7
MsG0580026460.01.T01 MTR_3g065460 39.000 100 53 2 8 99 340 439 2.95e-18 79.3
MsG0580026460.01.T01 MTR_1g022160 44.828 87 48 0 14 100 383 469 4.71e-18 78.6
MsG0580026460.01.T01 MTR_1g056640 47.297 74 38 1 19 91 403 476 5.74e-18 78.6
MsG0580026460.01.T01 MTR_3g083580 39.286 84 50 1 17 99 357 440 6.60e-18 78.2
MsG0580026460.01.T01 MTR_8g085420 37.000 100 62 1 1 99 10 109 6.86e-18 74.3
MsG0580026460.01.T01 MTR_5g078200 36.364 88 55 1 13 99 351 438 2.55e-17 76.6
MsG0580026460.01.T01 MTR_5g078200 36.364 88 55 1 13 99 318 405 3.22e-17 76.3
MsG0580026460.01.T01 MTR_4g079530 43.011 93 49 2 21 109 36 128 4.43e-17 73.2
MsG0580026460.01.T01 MTR_8g085720 43.678 87 47 2 14 99 357 442 4.77e-17 75.9
MsG0580026460.01.T01 MTR_5g015720 50.685 73 34 2 21 91 328 400 8.21e-17 75.1
MsG0580026460.01.T01 MTR_7g111600 44.706 85 45 2 22 105 160 243 1.10e-16 74.3
MsG0580026460.01.T01 MTR_4g083500 39.286 84 48 1 22 102 402 485 1.18e-16 74.7
MsG0580026460.01.T01 MTR_7g111600 44.706 85 45 2 22 105 160 243 1.31e-16 73.9
MsG0580026460.01.T01 MTR_7g111600 44.706 85 45 2 22 105 160 243 1.54e-16 73.2
MsG0580026460.01.T01 MTR_4g079530 45.000 80 43 1 21 99 36 115 1.61e-16 70.5
MsG0580026460.01.T01 MTR_3g048280 40.000 90 52 2 17 105 107 195 2.83e-16 71.6
MsG0580026460.01.T01 MTR_3g116510 44.048 84 47 0 18 101 367 450 3.58e-16 73.2
MsG0580026460.01.T01 MTR_3g116510 44.048 84 47 0 18 101 233 316 3.86e-16 72.8
MsG0580026460.01.T01 MTR_5g085580 44.737 76 41 1 17 91 377 452 1.22e-15 72.0
MsG0580026460.01.T01 MTR_1g031900 37.975 79 48 1 22 99 361 439 1.34e-15 71.6
MsG0580026460.01.T01 MTR_1g031900 37.975 79 48 1 22 99 361 439 2.09e-15 71.2
MsG0580026460.01.T01 MTR_4g069940 44.444 81 44 1 22 101 375 455 3.12e-15 70.9
MsG0580026460.01.T01 MTR_6g088885 38.043 92 55 1 17 106 364 455 3.19e-15 70.9
MsG0580026460.01.T01 MTR_8g102340 35.165 91 58 1 17 106 329 419 3.75e-15 70.5
MsG0580026460.01.T01 MTR_5g091650 42.857 84 46 2 17 99 103 185 7.93e-15 68.6
MsG0580026460.01.T01 MTR_5g091650 42.857 84 46 2 17 99 103 185 8.90e-15 67.4
MsG0580026460.01.T01 MTR_8g088120 42.647 68 37 2 33 99 59 125 4.87e-11 57.8
MsG0580026460.01.T01 MTR_8g012400 31.707 82 55 1 19 99 371 452 8.06e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026460.01.T01 AT1G18650 56.190 105 42 2 1 102 1 104 8.56e-38 124
MsG0580026460.01.T01 AT1G18650 56.190 105 42 2 1 102 1 104 4.60e-37 124
MsG0580026460.01.T01 AT1G69295 57.282 103 42 2 1 103 1 101 2.15e-35 121
MsG0580026460.01.T01 AT1G69295 58.252 103 37 3 1 103 1 97 1.03e-33 117
MsG0580026460.01.T01 AT2G03505 58.140 86 35 1 14 99 14 98 5.62e-32 109
MsG0580026460.01.T01 AT2G03505 58.140 86 35 1 14 99 14 98 3.14e-31 109
MsG0580026460.01.T01 AT2G03505 58.140 86 35 1 14 99 14 98 3.14e-31 109
MsG0580026460.01.T01 AT2G03505 58.140 86 35 1 14 99 14 98 3.14e-31 109
MsG0580026460.01.T01 AT1G13830 58.025 81 34 0 19 99 32 112 9.93e-31 108
MsG0580026460.01.T01 AT1G13830 57.500 80 34 0 20 99 19 98 5.84e-30 106
MsG0580026460.01.T01 AT5G61130 52.941 85 39 1 15 99 15 98 3.76e-27 99.8
MsG0580026460.01.T01 AT1G26450 56.180 89 36 3 3 91 4 89 9.51e-27 98.6
MsG0580026460.01.T01 AT5G08000 51.765 85 41 0 3 87 21 105 5.63e-26 97.1
MsG0580026460.01.T01 AT5G08000 56.000 75 32 1 13 87 13 86 6.73e-25 93.6
MsG0580026460.01.T01 AT1G11820 43.617 94 52 1 13 105 372 465 7.24e-24 95.1
MsG0580026460.01.T01 AT1G11820 44.318 88 48 1 13 99 372 459 7.24e-24 95.1
MsG0580026460.01.T01 AT4G13600 51.250 80 39 0 20 99 59 138 2.89e-23 90.5
MsG0580026460.01.T01 AT2G05790 45.263 95 44 3 12 102 378 468 1.62e-21 88.6
MsG0580026460.01.T01 AT1G79480 48.611 72 37 0 18 89 307 378 2.50e-20 84.7
MsG0580026460.01.T01 AT1G79480 48.611 72 37 0 18 89 306 377 2.58e-20 84.7
MsG0580026460.01.T01 AT5G55180 41.463 82 47 1 19 99 369 450 2.15e-18 79.7
MsG0580026460.01.T01 AT2G01630 38.636 88 53 1 13 99 351 438 4.11e-18 79.0
MsG0580026460.01.T01 AT5G35740 39.362 94 55 2 8 99 16 109 4.82e-18 73.9
MsG0580026460.01.T01 AT4G34480 42.045 88 51 0 14 101 356 443 5.24e-18 78.6
MsG0580026460.01.T01 AT4G34480 42.045 88 51 0 14 101 245 332 5.71e-18 78.2
MsG0580026460.01.T01 AT4G26830 42.045 88 47 2 19 102 368 455 5.78e-18 78.6
MsG0580026460.01.T01 AT4G26830 42.045 88 47 2 19 102 364 451 5.92e-18 78.6
MsG0580026460.01.T01 AT3G55430 41.096 73 43 0 17 89 361 433 6.53e-18 78.2
MsG0580026460.01.T01 AT2G01630 39.362 94 53 2 13 102 351 444 6.60e-18 78.6
MsG0580026460.01.T01 AT1G66250 36.170 94 56 2 13 102 359 452 1.19e-17 77.8
MsG0580026460.01.T01 AT4G05430 37.931 87 53 1 14 99 15 101 1.20e-17 73.6
MsG0580026460.01.T01 AT5G67460 41.975 81 46 1 20 99 291 371 1.23e-17 77.4
MsG0580026460.01.T01 AT5G67460 41.379 87 47 2 20 102 291 377 1.35e-17 77.0
MsG0580026460.01.T01 AT1G29380 47.059 85 40 3 22 102 148 231 1.85e-17 76.3
MsG0580026460.01.T01 AT4G05430 37.931 87 53 1 14 99 40 126 1.88e-17 73.9
MsG0580026460.01.T01 AT1G29380 48.101 79 39 2 22 99 148 225 2.05e-17 75.1
MsG0580026460.01.T01 AT1G29380 48.101 79 39 2 22 99 148 225 2.05e-17 75.1
MsG0580026460.01.T01 AT1G29380 46.512 86 41 3 22 103 148 232 2.12e-17 75.5
MsG0580026460.01.T01 AT5G24318 40.000 85 51 0 17 101 367 451 2.21e-17 77.0
MsG0580026460.01.T01 AT4G05430 37.931 87 53 1 14 99 40 126 2.24e-17 72.8
MsG0580026460.01.T01 AT2G04910 37.363 91 56 1 10 99 3 93 4.74e-17 71.6
MsG0580026460.01.T01 AT5G63240 31.667 120 68 2 1 106 8 127 4.75e-17 71.6
MsG0580026460.01.T01 AT2G04910 37.363 91 56 1 10 99 3 93 6.14e-17 70.9
MsG0580026460.01.T01 AT5G24318 39.759 83 50 0 17 99 367 449 1.12e-16 74.7
MsG0580026460.01.T01 AT1G09460 46.341 82 42 2 18 99 133 212 1.27e-16 74.3
MsG0580026460.01.T01 AT2G30933 42.353 85 44 3 22 102 82 165 1.97e-16 72.4
MsG0580026460.01.T01 AT2G30933 41.176 85 48 2 16 99 76 159 2.19e-16 70.9
MsG0580026460.01.T01 AT2G30933 41.176 85 48 2 16 99 76 159 2.19e-16 70.9
MsG0580026460.01.T01 AT3G58100 42.500 80 45 1 21 99 40 119 2.97e-16 70.9
MsG0580026460.01.T01 AT5G55180 41.975 81 46 1 19 98 369 449 5.12e-16 72.8
MsG0580026460.01.T01 AT3G58100 42.500 80 45 1 21 99 116 195 5.23e-16 71.6
MsG0580026460.01.T01 AT5G63250 36.364 88 53 1 22 106 42 129 1.33e-15 68.2
MsG0580026460.01.T01 AT5G24318 39.759 83 50 0 17 99 228 310 1.58e-15 71.2
MsG0580026460.01.T01 AT5G63230 41.791 67 39 0 22 88 26 92 1.63e-15 67.4
MsG0580026460.01.T01 AT5G63225 42.424 66 38 0 22 87 25 90 1.91e-15 67.0
MsG0580026460.01.T01 AT2G16230 41.026 78 46 0 22 99 366 443 3.40e-15 70.5
MsG0580026460.01.T01 AT4G09462 31.313 99 68 0 1 99 8 106 3.66e-15 66.6
MsG0580026460.01.T01 AT3G13560 39.506 81 48 1 20 99 360 440 4.55e-15 70.5
MsG0580026460.01.T01 AT3G13560 39.506 81 48 1 20 99 360 440 4.55e-15 70.5
MsG0580026460.01.T01 AT3G13560 39.506 81 48 1 20 99 360 440 4.55e-15 70.5
MsG0580026460.01.T01 AT3G13560 39.506 81 48 1 20 99 360 440 4.55e-15 70.5
MsG0580026460.01.T01 AT3G13560 39.506 81 48 1 20 99 360 440 4.55e-15 70.5
MsG0580026460.01.T01 AT5G56590 37.975 79 48 1 22 99 369 447 2.54e-14 68.2
MsG0580026460.01.T01 AT4G29360 35.443 79 50 1 22 99 401 479 4.87e-14 67.4
MsG0580026460.01.T01 AT4G29360 35.443 79 50 1 22 99 391 469 5.26e-14 67.4
MsG0580026460.01.T01 AT4G09465 32.530 83 56 0 17 99 26 108 8.54e-14 63.2
MsG0580026460.01.T01 AT4G09467 32.530 83 56 0 17 99 26 108 1.30e-13 62.8
MsG0580026460.01.T01 AT4G09464 32.530 83 56 0 17 99 26 108 1.30e-13 62.8
MsG0580026460.01.T01 AT1G66855 31.633 98 62 2 7 99 7 104 2.28e-13 62.0
MsG0580026460.01.T01 AT4G09090 32.967 91 56 1 2 87 6 96 2.73e-13 61.6
MsG0580026460.01.T01 AT4G09466 28.571 91 65 0 9 99 18 108 2.85e-13 61.6
MsG0580026460.01.T01 AT1G66870 29.000 100 70 1 1 99 5 104 3.58e-13 61.2
MsG0580026460.01.T01 AT1G66852 32.222 90 59 2 1 89 5 93 8.09e-13 60.5
MsG0580026460.01.T01 AT1G66870 31.765 85 57 1 16 99 47 131 9.03e-13 60.8
MsG0580026460.01.T01 AT2G39640 34.524 84 55 0 17 100 455 538 1.05e-12 63.5
MsG0580026460.01.T01 AT2G39640 37.975 79 49 0 22 100 359 437 3.98e-11 58.9
MsG0580026460.01.T01 AT4G16165 32.653 98 61 2 7 99 7 104 1.23e-12 60.1
MsG0580026460.01.T01 AT2G29735 34.848 66 43 0 22 87 31 96 5.10e-11 55.8

Find 32 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAGCTATTTCCAGAAAA+AGG 0.162295 5:+37867852 MsG0580026460.01.T01:CDS
GAAATCTATTTGATGAAAAT+TGG 0.183068 5:-37867305 None:intergenic
CAGTGATCTTTAATAGTATT+TGG 0.214822 5:-37867817 None:intergenic
TAACTTCATGTATGCTTAAA+AGG 0.230401 5:-37867059 None:intergenic
TGTACACAAATTCAGCAAAA+TGG 0.240176 5:+37867781 MsG0580026460.01.T01:CDS
CAAGTTGGTGGAGTTGAACT+TGG 0.386998 5:-37867916 None:intergenic
ATCATAATTATTATTAATCA+TGG 0.397515 5:+37867340 MsG0580026460.01.T01:exon
GTGCTCTTCCTTTCACTGAC+TGG 0.399657 5:+37867380 MsG0580026460.01.T01:CDS
CTTAAAAGGTGAGAGTGATC+TGG 0.417813 5:-37867045 None:intergenic
ATAGATTATGCTTGTGGTGC+TGG 0.423350 5:+37867751 MsG0580026460.01.T01:CDS
GTACACAAATTCAGCAAAAT+GGG 0.441669 5:+37867782 MsG0580026460.01.T01:CDS
CTTTATTGTGTGTGTAAAGA+TGG 0.447451 5:+37867700 MsG0580026460.01.T01:CDS
CAAGAAACATACCCACTTGA+AGG 0.473768 5:-37868059 None:intergenic
CAGAAGGGTACTTTAATATG+TGG 0.494337 5:-37867274 None:intergenic
TTAAAAGGTGAGAGTGATCT+GGG 0.497858 5:-37867044 None:intergenic
AGAGACAGTAGCTAGGAGAA+TGG 0.505124 5:-37867220 None:intergenic
GTTTCTTGAACATCATCTAG+TGG 0.523559 5:+37868074 MsG0580026460.01.T01:CDS
AAAATTGGATCAAGTTCAGA+AGG 0.524604 5:-37867290 None:intergenic
AATAGAGCTAACTTACAAGT+TGG 0.537719 5:-37867931 None:intergenic
TTGAATATCCAGTCAGTGAA+AGG 0.544399 5:-37867388 None:intergenic
AGAGCTAACTTACAAGTTGG+TGG 0.546087 5:-37867928 None:intergenic
CATGTGTTTATCCTTCAAGT+GGG 0.546392 5:+37868048 MsG0580026460.01.T01:CDS
ATAGTATTTGGCTGAAAACA+TGG 0.547340 5:-37867805 None:intergenic
AAAAGAGAGAGACAGTAGCT+AGG 0.547420 5:-37867227 None:intergenic
TTGTGTGTGTAAAGATGGTG+TGG 0.548656 5:+37867705 MsG0580026460.01.T01:CDS
TCATGTGTTTATCCTTCAAG+TGG 0.556606 5:+37868047 MsG0580026460.01.T01:CDS
AAAGCAATAGATTATGCTTG+TGG 0.562210 5:+37867745 MsG0580026460.01.T01:CDS
TTTCTGGAATAGAGAAAGTG+GGG 0.565723 5:-37867193 None:intergenic
TGGAATAGAGAAAGTGGGGA+AGG 0.575492 5:-37867189 None:intergenic
TGTGTGTGTAAAGATGGTGT+GGG 0.677024 5:+37867706 MsG0580026460.01.T01:CDS
AAATTGGATCAAGTTCAGAA+GGG 0.695511 5:-37867289 None:intergenic
TAAAAGGTGAGAGTGATCTG+GGG 0.753650 5:-37867043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAATTATTATTAATCA+TGG + Chr5:37867340-37867359 MsG0580026460.01.T01:exon 10.0%
!! AATAAGTCAAAAAAAATTCA+AGG - Chr5:37867966-37867985 None:intergenic 15.0%
!!! TAATAAATAAACTCATCTTT+TGG - Chr5:37867632-37867651 None:intergenic 15.0%
!! AAAAGTAAGATATGAAAAAG+TGG - Chr5:37867484-37867503 None:intergenic 20.0%
!! GAAATCTATTTGATGAAAAT+TGG - Chr5:37867308-37867327 None:intergenic 20.0%
!! TTCAAGTAAGTAACTAAATT+TGG + Chr5:37867406-37867425 MsG0580026460.01.T01:intron 20.0%
! CAGTGATCTTTAATAGTATT+TGG - Chr5:37867820-37867839 None:intergenic 25.0%
! GTAGAAAAAGAAGAAGAAAA+GGG - Chr5:37867565-37867584 None:intergenic 25.0%
! TAACTTCATGTATGCTTAAA+AGG - Chr5:37867062-37867081 None:intergenic 25.0%
! TAGAACTAAAAAGGTTGTTT+AGG - Chr5:37867456-37867475 None:intergenic 25.0%
! TGTAGAAAAAGAAGAAGAAA+AGG - Chr5:37867566-37867585 None:intergenic 25.0%
!! AATAGCTATTTCCAGAAAAA+GGG + Chr5:37867853-37867872 MsG0580026460.01.T01:CDS 25.0%
!! TAATAGCTATTTCCAGAAAA+AGG + Chr5:37867852-37867871 MsG0580026460.01.T01:CDS 25.0%
!!! GTGGATTTTTAGAACTAAAA+AGG - Chr5:37867465-37867484 None:intergenic 25.0%
!!! TTTGTTTCTGTTTGTTCAAT+AGG + Chr5:37867670-37867689 MsG0580026460.01.T01:intron 25.0%
AAAATTGGATCAAGTTCAGA+AGG - Chr5:37867293-37867312 None:intergenic 30.0%
AAAGCAATAGATTATGCTTG+TGG + Chr5:37867745-37867764 MsG0580026460.01.T01:CDS 30.0%
AAATTGGATCAAGTTCAGAA+GGG - Chr5:37867292-37867311 None:intergenic 30.0%
AATAGAGCTAACTTACAAGT+TGG - Chr5:37867934-37867953 None:intergenic 30.0%
ATAGTATTTGGCTGAAAACA+TGG - Chr5:37867808-37867827 None:intergenic 30.0%
ATGTTTCTTGAACATCATCT+AGG + Chr5:37868072-37868091 MsG0580026460.01.T01:CDS 30.0%
CTTTATTGTGTGTGTAAAGA+TGG + Chr5:37867700-37867719 MsG0580026460.01.T01:CDS 30.0%
GTACACAAATTCAGCAAAAT+GGG + Chr5:37867782-37867801 MsG0580026460.01.T01:CDS 30.0%
TGTACACAAATTCAGCAAAA+TGG + Chr5:37867781-37867800 MsG0580026460.01.T01:CDS 30.0%
!!! ATTTTCTGGAATAGAGAAAG+TGG - Chr5:37867198-37867217 None:intergenic 30.0%
!!! TTTTCTGGAATAGAGAAAGT+GGG - Chr5:37867197-37867216 None:intergenic 30.0%
CATGTGTTTATCCTTCAAGT+GGG + Chr5:37868048-37868067 MsG0580026460.01.T01:CDS 35.0%
GTTTCTGTTTGTTCAATAGG+TGG + Chr5:37867673-37867692 MsG0580026460.01.T01:intron 35.0%
TCATGTGTTTATCCTTCAAG+TGG + Chr5:37868047-37868066 MsG0580026460.01.T01:CDS 35.0%
TTAAAAGGTGAGAGTGATCT+GGG - Chr5:37867047-37867066 None:intergenic 35.0%
TTGAATATCCAGTCAGTGAA+AGG - Chr5:37867391-37867410 None:intergenic 35.0%
!! AGCTTGTGATTTTTCTGGTA+TGG + Chr5:37867888-37867907 MsG0580026460.01.T01:CDS 35.0%
!! CAGAAGGGTACTTTAATATG+TGG - Chr5:37867277-37867296 None:intergenic 35.0%
!! TTTCTGGAATAGAGAAAGTG+GGG - Chr5:37867196-37867215 None:intergenic 35.0%
AAAAGAGAGAGACAGTAGCT+AGG - Chr5:37867230-37867249 None:intergenic 40.0%
ATAGATTATGCTTGTGGTGC+TGG + Chr5:37867751-37867770 MsG0580026460.01.T01:CDS 40.0%
CAAGAAACATACCCACTTGA+AGG - Chr5:37868062-37868081 None:intergenic 40.0%
CTTAAAAGGTGAGAGTGATC+TGG - Chr5:37867048-37867067 None:intergenic 40.0%
TAAAAGGTGAGAGTGATCTG+GGG - Chr5:37867046-37867065 None:intergenic 40.0%
TGTGTGTGTAAAGATGGTGT+GGG + Chr5:37867706-37867725 MsG0580026460.01.T01:CDS 40.0%
TTGTGTGTGTAAAGATGGTG+TGG + Chr5:37867705-37867724 MsG0580026460.01.T01:CDS 40.0%
! AGAGCTAACTTACAAGTTGG+TGG - Chr5:37867931-37867950 None:intergenic 40.0%
! CAAGGAGCTTGTGATTTTTC+TGG + Chr5:37867883-37867902 MsG0580026460.01.T01:CDS 40.0%
! CTAGGAGAATGGAGATTTTC+TGG - Chr5:37867212-37867231 None:intergenic 40.0%
AGAGACAGTAGCTAGGAGAA+TGG - Chr5:37867223-37867242 None:intergenic 45.0%
CAGAAAAAGGGTCAAGCTCA+AGG + Chr5:37867865-37867884 MsG0580026460.01.T01:CDS 45.0%
TGGAATAGAGAAAGTGGGGA+AGG - Chr5:37867192-37867211 None:intergenic 45.0%
! CTTGAGCTTGACCCTTTTTC+TGG - Chr5:37867867-37867886 None:intergenic 45.0%
!! CAAGTTGGTGGAGTTGAACT+TGG - Chr5:37867919-37867938 None:intergenic 45.0%
GTGCTCTTCCTTTCACTGAC+TGG + Chr5:37867380-37867399 MsG0580026460.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr5 gene 37867007 37868093 37867007 ID=MsG0580026460.01;Name=MsG0580026460.01
Chr5 mRNA 37867007 37868093 37867007 ID=MsG0580026460.01.T01;Parent=MsG0580026460.01;Name=MsG0580026460.01.T01;_AED=0.39;_eAED=0.41;_QI=352|0.5|0.33|1|0|0.33|3|0|119
Chr5 exon 37867007 37867410 37867007 ID=MsG0580026460.01.T01:exon:2967;Parent=MsG0580026460.01.T01
Chr5 exon 37867692 37867941 37867692 ID=MsG0580026460.01.T01:exon:2968;Parent=MsG0580026460.01.T01
Chr5 exon 37868036 37868093 37868036 ID=MsG0580026460.01.T01:exon:2969;Parent=MsG0580026460.01.T01
Chr5 five_prime_UTR 37867007 37867358 37867007 ID=MsG0580026460.01.T01:five_prime_utr;Parent=MsG0580026460.01.T01
Chr5 CDS 37867359 37867410 37867359 ID=MsG0580026460.01.T01:cds;Parent=MsG0580026460.01.T01
Chr5 CDS 37867692 37867941 37867692 ID=MsG0580026460.01.T01:cds;Parent=MsG0580026460.01.T01
Chr5 CDS 37868036 37868093 37868036 ID=MsG0580026460.01.T01:cds;Parent=MsG0580026460.01.T01
Gene Sequence

>MsG0580026460.01.T01

ATGGCTCTTCTTGCTTATTTTGTGCTCTTCCTTTCACTGACTGGATATTCAAGTGGTGCTCTTTATTGTGTGTGTAAAGATGGTGTGGGAGATCAAAATCTTCAAAAAGCAATAGATTATGCTTGTGGTGCTGGAGCTGATTGTACACAAATTCAGCAAAATGGGCCATGTTTTCAGCCAAATACTATTAAAGATCACTGCAATTATGCTGTTAATAGCTATTTCCAGAAAAAGGGTCAAGCTCAAGGAGCTTGTGATTTTTCTGGTATGGCTGCTCCAAGTTCAACTCCACCAACTTGTAACTTCAACATCTTCATGTGTTTATCCTTCAAGTGGGTATGTTTCTTGAACATCATCTAG

Protein sequence

>MsG0580026460.01.T01

MALLAYFVLFLSLTGYSSGALYCVCKDGVGDQNLQKAIDYACGAGADCTQIQQNGPCFQPNTIKDHCNYAVNSYFQKKGQAQGACDFSGMAAPSSTPPTCNFNIFMCLSFKWVCFLNII*