AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030413.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030413.01.T01 MTR_6g005840 88.552 891 87 5 1 879 9 896 0.0 1528
MsG0680030413.01.T01 MTR_6g005840 84.287 891 83 6 1 879 9 854 0.0 1438
MsG0680030413.01.T01 MTR_6g005960 77.778 684 81 7 1 673 9 632 0.0 998
MsG0680030413.01.T01 MTR_6g005960 82.609 46 8 0 250 295 631 676 3.66e-17 86.7
MsG0680030413.01.T01 MTR_1g066890 31.054 351 180 12 121 441 165 483 1.57e-31 133
MsG0680030413.01.T01 MTR_1g072780 36.500 200 121 4 260 457 362 557 2.62e-30 129
MsG0680030413.01.T01 MTR_2g104120 31.660 259 139 7 259 504 257 490 5.10e-28 122
MsG0680030413.01.T01 MTR_4g036445 33.058 242 152 6 259 492 313 552 1.40e-26 116
MsG0680030413.01.T01 MTR_1g049120 35.263 190 117 5 256 441 286 473 4.64e-26 115
MsG0680030413.01.T01 MTR_7g113180 45.556 90 48 1 260 348 87 176 6.68e-21 99.4
MsG0680030413.01.T01 MTR_2g104980 43.000 100 56 1 259 357 232 331 2.02e-18 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030413.01.T01 AT3G27860 32.704 477 241 17 260 716 61 477 9.25e-53 196
MsG0680030413.01.T01 AT3G27860 32.704 477 241 17 260 716 61 477 9.25e-53 196
MsG0680030413.01.T01 AT3G09670 37.569 181 109 3 264 441 201 380 6.16e-27 118
MsG0680030413.01.T01 AT3G09670 37.569 181 109 3 264 441 201 380 6.16e-27 118
MsG0680030413.01.T01 AT5G02950 37.427 171 103 3 264 431 99 268 4.03e-26 115
MsG0680030413.01.T01 AT5G02950 37.427 171 103 3 264 431 99 268 4.03e-26 115
MsG0680030413.01.T01 AT5G27650 32.292 192 106 5 260 438 171 351 1.44e-21 101
MsG0680030413.01.T01 AT3G05430 46.667 90 47 1 260 348 133 222 2.59e-20 97.4
MsG0680030413.01.T01 AT3G05430 46.667 90 47 1 260 348 133 222 2.64e-20 97.4
MsG0680030413.01.T01 AT3G48187 28.061 196 109 4 255 441 101 273 1.25e-14 79.0

Find 198 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTCCTGAACCTGATTT+TGG 0.131227 6:-1880717 None:intergenic
TTCTCACTTGTTTCCACTAT+TGG 0.202116 6:-1879772 None:intergenic
TCATCAAAATTATCCTTAAA+AGG 0.203644 6:-1880228 None:intergenic
CCCCTTCTTGCCGCTGGTCT+TGG 0.225027 6:-1881618 None:intergenic
TTTCTCTTCCTTCCAGTTCC+AGG 0.230105 6:-1881473 None:intergenic
GAAAAGCATCGCTGACATTA+TGG 0.243680 6:+1880761 MsG0680030413.01.T01:CDS
TCTGGTTGCAATTAAGTCTA+AGG 0.249968 6:+1880841 MsG0680030413.01.T01:CDS
CTTTCTCATCATCTGGTGTT+TGG 0.275619 6:-1881262 None:intergenic
CTTCTTGTCTTGTGAAGGTT+TGG 0.278613 6:-1881687 None:intergenic
GGATGGTGAGGAGGGAGAAA+AGG 0.299553 6:+1879819 MsG0680030413.01.T01:CDS
CTGAATCGATGGAACCATTT+GGG 0.308664 6:+1879269 None:intergenic
GATTGATCAAGCTCAGATTC+TGG 0.308922 6:-1881500 None:intergenic
CTCTTGGTAGCTTACTTTGA+TGG 0.313271 6:+1880171 MsG0680030413.01.T01:CDS
GAGCGAGGTGAAAGGTCTTT+TGG 0.315567 6:+1881859 MsG0680030413.01.T01:CDS
CTCTCACTTGCCTCCACTAT+TGG 0.331300 6:-1879880 None:intergenic
AGGGTTTCTTTCTCATCATC+TGG 0.332565 6:-1881269 None:intergenic
TATTGATATTGCTAGTGTTC+TGG 0.336830 6:+1880512 MsG0680030413.01.T01:CDS
TTCTCGCTTATCTCCACAAT+TGG 0.337604 6:-1879676 None:intergenic
ATGCTCTCTGTGCCACTATC+AGG 0.344127 6:-1880429 None:intergenic
ACTGATTCTGAAGTGAATAA+TGG 0.349870 6:+1879553 MsG0680030413.01.T01:CDS
GAAGGAACCTTGACTTTCTC+TGG 0.349916 6:-1881296 None:intergenic
TCTACCTTTGTCTTGAAATC+AGG 0.353557 6:-1881836 None:intergenic
TTCTGCTTTCTTCTACGGTT+CGG 0.373335 6:-1880741 None:intergenic
GCTGAAAATGTTATGGTTGA+AGG 0.374647 6:+1879307 MsG0680030413.01.T01:CDS
TTCAAGTCCGAGAACCCGTT+TGG 0.377020 6:-1880613 None:intergenic
AATGATTCCCTGGTGAATAA+TGG 0.377716 6:+1879427 MsG0680030413.01.T01:CDS
AGGGGCAAATCGCAGCATTC+AGG 0.380762 6:+1880981 MsG0680030413.01.T01:CDS
GCAGGAGAAGAATGAGGTTA+AGG 0.386872 6:+1879336 MsG0680030413.01.T01:CDS
TAGTTTAGCTGAAAATGTTA+TGG 0.387200 6:+1879300 MsG0680030413.01.T01:CDS
TCAATCAGAGACTTTGTAAA+GGG 0.392716 6:+1881152 MsG0680030413.01.T01:CDS
GATGGTGAGGAGGGAGAAAA+GGG 0.392991 6:+1879820 MsG0680030413.01.T01:CDS
GTGCCCCTCCTTGACATTTG+TGG 0.393072 6:-1881359 None:intergenic
AAGAGAAAAGAGTTGCTTGC+AGG 0.395656 6:+1880915 MsG0680030413.01.T01:CDS
GTTGTCTTCTTTGTTGAAAA+CGG 0.400550 6:+1879576 MsG0680030413.01.T01:CDS
AAAAGCATCGCTGACATTAT+GGG 0.401533 6:+1880762 MsG0680030413.01.T01:CDS
CCTTGACTTTCTCTGGATCA+AGG 0.404674 6:-1881289 None:intergenic
TGCAAGTGATGATGAAGTTC+TGG 0.405456 6:+1880823 MsG0680030413.01.T01:CDS
TTGTCTTCTTTGTTGAAAAC+GGG 0.406098 6:+1879577 MsG0680030413.01.T01:CDS
AGTCGTCCGTTTGTTGTGGC+GGG 0.411945 6:+1880339 MsG0680030413.01.T01:CDS
ATCGGTCCCCTTCTTGCCGC+TGG 0.412154 6:-1881624 None:intergenic
ATGATTCCCTGGTGAATAAT+GGG 0.416782 6:+1879428 MsG0680030413.01.T01:CDS
TCATCCGTGGTGGCCAGGTC+GGG 0.423902 6:+1880092 MsG0680030413.01.T01:CDS
GAGATGGTGTGGCTGGAGTT+AGG 0.425440 6:-1881721 None:intergenic
TCTTTCTTCTTGTCTTGTGA+AGG 0.429340 6:-1881692 None:intergenic
GTCATACAGCAGAAACTTCA+AGG 0.429955 6:+1881776 MsG0680030413.01.T01:CDS
GAGGATCCCAAACGGGTTCT+CGG 0.430303 6:+1880606 MsG0680030413.01.T01:CDS
ACTGAATCGATGGAACCATT+TGG 0.431119 6:+1879268 None:intergenic
GCCGAAAGAACCAAATGAAA+AGG 0.433551 6:+1881073 MsG0680030413.01.T01:CDS
TTCGGCGGTTACACTTGAAC+CGG 0.441099 6:+1880452 MsG0680030413.01.T01:CDS
ACCAAGACCAGCGGCAAGAA+GGG 0.445474 6:+1881617 MsG0680030413.01.T01:CDS
TCAAGTCCGAGAACCCGTTT+GGG 0.445752 6:-1880612 None:intergenic
ATATCACCTAGCGAAGATTC+TGG 0.445815 6:+1881530 MsG0680030413.01.T01:CDS
TTGACCCCAAAATCAGGTTC+AGG 0.446624 6:+1880711 MsG0680030413.01.T01:CDS
GACTGTTGAGGTTCCAATAG+TGG 0.448213 6:+1879759 MsG0680030413.01.T01:CDS
CTGATTCTGAAGTGAATAAT+GGG 0.449509 6:+1879554 MsG0680030413.01.T01:CDS
AACGGGAAGGAGAATGAGGA+GGG 0.451447 6:+1879715 MsG0680030413.01.T01:CDS
TTTGTAAAGGGAAGAGGTGC+TGG 0.453304 6:+1881164 MsG0680030413.01.T01:CDS
AGTCCTCTTCAAACGGCCCT+TGG 0.454433 6:-1880674 None:intergenic
GTCCTCTTCAAACGGCCCTT+GGG 0.454567 6:-1880673 None:intergenic
AACAGCATAGGTGAAAGCTT+TGG 0.458113 6:-1880271 None:intergenic
AATGAAGCTGAACCTGGAAC+TGG 0.462625 6:+1881461 MsG0680030413.01.T01:CDS
CTGCCATTGACCCCAAAATC+AGG 0.463002 6:+1880705 MsG0680030413.01.T01:CDS
GTCATCCGTGGTGGCCAGGT+CGG 0.463100 6:+1880091 MsG0680030413.01.T01:CDS
TAGTGGCACAGAGAGCATTT+CGG 0.469354 6:+1880434 MsG0680030413.01.T01:CDS
TATTGCTAGTGTTCTGGAGC+TGG 0.469362 6:+1880518 MsG0680030413.01.T01:CDS
TTTGAAGGAGAATGACTCTC+AGG 0.472324 6:+1879525 MsG0680030413.01.T01:CDS
AAGAGTCATCCGTGGTGGCC+AGG 0.472435 6:+1880087 MsG0680030413.01.T01:CDS
AAACTAGTTTCAACCCCAAA+TGG 0.472605 6:-1879283 None:intergenic
AATGAGAAGGATGGTGAGGA+GGG 0.473218 6:+1879811 MsG0680030413.01.T01:CDS
GTCTATTGAGGTACCAATAG+TGG 0.480190 6:+1879867 MsG0680030413.01.T01:CDS
GAATGAGAAGGATGGTGAGG+AGG 0.482796 6:+1879810 MsG0680030413.01.T01:CDS
ATATAAGTTACCTTGTTATG+AGG 0.486781 6:+1880587 MsG0680030413.01.T01:CDS
TTGATGCAAAAGATAAGGAA+TGG 0.488934 6:+1880798 MsG0680030413.01.T01:CDS
TTGTTATGAGGATCCCAAAC+GGG 0.489406 6:+1880599 MsG0680030413.01.T01:CDS
CTTGACTTTCTCTGGATCAA+GGG 0.492651 6:-1881288 None:intergenic
ACTTTGATGGAACATTTGCT+TGG 0.495401 6:+1880184 MsG0680030413.01.T01:CDS
TCTGAAGGAGAATGATTCTC+AGG 0.496504 6:+1879399 MsG0680030413.01.T01:CDS
GATGAGTCGTCCGTTTGTTG+TGG 0.497438 6:+1880335 MsG0680030413.01.T01:CDS
AGCTGGAAATATTGAAGGCT+CGG 0.497817 6:+1880535 MsG0680030413.01.T01:CDS
GAATACAATGAAGCTGAACC+TGG 0.498419 6:+1881455 MsG0680030413.01.T01:CDS
GACTGTGGAGATTCCAATTG+TGG 0.500206 6:+1879663 MsG0680030413.01.T01:CDS
AACAAAGATGACAATTGTGA+TGG 0.500623 6:+1879943 MsG0680030413.01.T01:CDS
ATATTGATATTGAAGTGAAC+GGG 0.501266 6:+1879698 MsG0680030413.01.T01:CDS
TCTGGAGCTGGAAATATTGA+AGG 0.502048 6:+1880530 MsG0680030413.01.T01:CDS
CAAGAAGCTGTAAATGAGGT+TGG 0.503519 6:+1880294 MsG0680030413.01.T01:CDS
TTTGACAGAATTTCGGCTGA+AGG 0.505616 6:-1881314 None:intergenic
ACAGCAGAAACTTCAAGGTC+TGG 0.505797 6:+1881781 MsG0680030413.01.T01:CDS
GAAACAAAAGAATAGACTCT+TGG 0.505954 6:+1880155 MsG0680030413.01.T01:CDS
TTCAATCAGAGACTTTGTAA+AGG 0.506655 6:+1881151 MsG0680030413.01.T01:CDS
GTCGTCCGTTTGTTGTGGCG+GGG 0.506854 6:+1880340 MsG0680030413.01.T01:CDS
CAGTGAGGCATTTCAAGAGT+TGG 0.507802 6:+1881217 MsG0680030413.01.T01:CDS
GACTATTGAGGATTCAATAG+TGG 0.508888 6:+1879975 MsG0680030413.01.T01:CDS
AGCCACACCATCTCTGTCAC+AGG 0.510870 6:+1881730 MsG0680030413.01.T01:CDS
GTCTGAATTCGCTCCAATGT+TGG 0.517774 6:+1880371 MsG0680030413.01.T01:CDS
TCGTCCGTTTGTTGTGGCGG+GGG 0.517804 6:+1880341 MsG0680030413.01.T01:CDS
TCTTCAAACGGCCCTTGGGA+TGG 0.521494 6:-1880669 None:intergenic
AGTGAACGGGAAGGAGAATG+AGG 0.522445 6:+1879711 MsG0680030413.01.T01:CDS
AGCGGAGAGGAAAACGATGA+AGG 0.522589 6:+1881047 MsG0680030413.01.T01:CDS
GAGAACATCAGCGGTGGGAG+CGG 0.524254 6:+1881029 MsG0680030413.01.T01:CDS
AGAGACTTTGTAAAGGGAAG+AGG 0.528142 6:+1881158 MsG0680030413.01.T01:CDS
AACCAAGACCAGCGGCAAGA+AGG 0.531503 6:+1881616 MsG0680030413.01.T01:CDS
CCGAAAGAACCAAATGAAAA+GGG 0.533668 6:+1881074 MsG0680030413.01.T01:CDS
AGATGTTGATGCAAAAGATA+AGG 0.535613 6:+1880793 MsG0680030413.01.T01:CDS
GTAGAGTAGTCCTCTTCAAA+CGG 0.540996 6:-1880681 None:intergenic
ACTGATACAGAGACTGTAAG+AGG 0.542096 6:+1880939 MsG0680030413.01.T01:CDS
AATATTGATATTGAAGTGAA+CGG 0.544327 6:+1879697 MsG0680030413.01.T01:CDS
CCAAGACCAGCGGCAAGAAG+GGG 0.545038 6:+1881618 MsG0680030413.01.T01:CDS
GCGGAGAGGAAAACGATGAA+GGG 0.547080 6:+1881048 MsG0680030413.01.T01:CDS
GACCGAGGTTTCGGTTCTGA+AGG 0.547258 6:+1879384 MsG0680030413.01.T01:CDS
TCAGGTTGTGAATGATTCCC+TGG 0.547979 6:+1879417 MsG0680030413.01.T01:CDS
GAAAAGGGTGAAAATTGTGA+TGG 0.548470 6:+1879835 MsG0680030413.01.T01:CDS
TTAAAAGGCTTCAATTGTGA+CGG 0.549559 6:-1880213 None:intergenic
GAGTCGTCCGTTTGTTGTGG+CGG 0.551345 6:+1880338 MsG0680030413.01.T01:CDS
TGTGACAGAGATGGTGTGGC+TGG 0.552295 6:-1881728 None:intergenic
GAAATCAGGCGATTTGTCGT+CGG 0.552919 6:-1881822 None:intergenic
ATCCCAAGGGCCGTTTGAAG+AGG 0.558737 6:+1880671 MsG0680030413.01.T01:CDS
AAGCTGTAAATGAGGTTGGA+AGG 0.558828 6:+1880298 MsG0680030413.01.T01:CDS
ACTGAGAAGGAGAGCGCGGA+AGG 0.560275 6:+1879919 MsG0680030413.01.T01:CDS
GACGATCAACTTAGATGTCT+CGG 0.562618 6:-1881756 None:intergenic
AAAGCATCGCTGACATTATG+GGG 0.562780 6:+1880763 MsG0680030413.01.T01:CDS
CTGGTTGCAATTAAGTCTAA+GGG 0.563006 6:+1880842 MsG0680030413.01.T01:CDS
CTCCTTCAGAACCGAAACCT+CGG 0.563807 6:-1879386 None:intergenic
CGCTTAGTCCACAAATGTCA+AGG 0.564092 6:+1881351 MsG0680030413.01.T01:CDS
GCAAGTTCCGACGCATCAGA+CGG 0.564834 6:-1880123 None:intergenic
TATGGTTGAAGGTTCAGAGC+AGG 0.565252 6:+1879318 MsG0680030413.01.T01:CDS
TTGACGATTTGATTGATGAA+AGG 0.567900 6:+1880025 MsG0680030413.01.T01:CDS
CGATATTGAAATGACTGAGA+AGG 0.573998 6:+1879906 MsG0680030413.01.T01:CDS
AGTGGAGGCTAGTGAGAGCA+TGG 0.574743 6:+1879993 MsG0680030413.01.T01:CDS
TGATGCAAAAGATAAGGAAT+GGG 0.574961 6:+1880799 MsG0680030413.01.T01:CDS
CTTGTTATGAGGATCCCAAA+CGG 0.575919 6:+1880598 MsG0680030413.01.T01:CDS
GAACGGGAAGGAGAATGAGG+AGG 0.577213 6:+1879714 MsG0680030413.01.T01:CDS
AAGGCTTCAATTGTGACGGA+TGG 0.578767 6:-1880209 None:intergenic
TGTGAGAAGAAAGTCAAAGA+AGG 0.580505 6:+1879625 MsG0680030413.01.T01:CDS
TGGACCAGCCAAGAAAAGAA+AGG 0.581389 6:+1881550 MsG0680030413.01.T01:CDS
AAGGTAGAGAGCGAGGTGAA+AGG 0.582258 6:+1881851 MsG0680030413.01.T01:CDS
AAGACACCCCATTATTCACC+AGG 0.585252 6:-1879435 None:intergenic
TGGGAAGATCGAGACTATTG+AGG 0.585945 6:+1879963 MsG0680030413.01.T01:CDS
AGCTGTAAATGAGGTTGGAA+GGG 0.590294 6:+1880299 MsG0680030413.01.T01:CDS
ACAAAGATGACAATTGTGAT+GGG 0.590514 6:+1879944 MsG0680030413.01.T01:CDS
GCAGTTGAAGCACCATCCCA+AGG 0.591867 6:+1880657 MsG0680030413.01.T01:CDS
AAAAGGGTGAAAATTGTGAT+GGG 0.593063 6:+1879836 MsG0680030413.01.T01:CDS
TGAATCGATGGAACCATTTG+GGG 0.594772 6:+1879270 None:intergenic
TAGTCCACAAATGTCAAGGA+GGG 0.595379 6:+1881355 MsG0680030413.01.T01:CDS
ACTTGAGAAAGTAACTCAGC+CGG 0.596936 6:-1880471 None:intergenic
GCTGGTCCAGAATCTTCGCT+AGG 0.598905 6:-1881536 None:intergenic
TTATGATCCGTCTGATGCGT+CGG 0.599363 6:+1880116 MsG0680030413.01.T01:CDS
CTGTTATACTTTGAAACTCG+AGG 0.601039 6:-1881197 None:intergenic
TGGAAAAGAAAGCTGTGAGA+GGG 0.602275 6:+1880962 MsG0680030413.01.T01:CDS
TACAGCTTCTTGAACAGCAT+AGG 0.602664 6:-1880283 None:intergenic
TTGAAACTCGAGGAGAAAGT+AGG 0.603195 6:-1881187 None:intergenic
TCTCTGATTGAAGTAGTGAA+AGG 0.604217 6:-1881140 None:intergenic
AAATGAGGTTGGAAGGGTGC+TGG 0.605434 6:+1880305 MsG0680030413.01.T01:CDS
GTGGAAAAGAAAGCTGTGAG+AGG 0.610772 6:+1880961 MsG0680030413.01.T01:CDS
TGATATTGAAGTGAACGGGA+AGG 0.611005 6:+1879702 MsG0680030413.01.T01:CDS
CGTTTGGGATCCTCATAACA+AGG 0.612389 6:-1880597 None:intergenic
TTTGATGATATGGTGGGACA+AGG 0.614353 6:+1880243 MsG0680030413.01.T01:CDS
TAAACCCGACCTGGCCACCA+CGG 0.618975 6:-1880096 None:intergenic
AGAAGTTCATTGTATCGCGA+AGG 0.620174 6:+1881419 MsG0680030413.01.T01:CDS
GACGGATCATAAACCCGACC+TGG 0.623787 6:-1880105 None:intergenic
GTTGAGATGAATGAGAAGGA+TGG 0.624876 6:+1879802 MsG0680030413.01.T01:CDS
CAAGACAAAGGTAGAGAGCG+AGG 0.627059 6:+1881844 MsG0680030413.01.T01:CDS
ATCGCCTGATTTCAAGACAA+AGG 0.628439 6:+1881832 MsG0680030413.01.T01:CDS
GGTAATGAGAACATCAGCGG+TGG 0.629748 6:+1881023 MsG0680030413.01.T01:CDS
TTCAGAGCAGGAGAAGAATG+AGG 0.630276 6:+1879330 MsG0680030413.01.T01:CDS
TATTGAGGATTCAATAGTGG+AGG 0.631691 6:+1879978 MsG0680030413.01.T01:CDS
TGGGAAGATAGAGTCTATTG+AGG 0.636228 6:+1879855 MsG0680030413.01.T01:CDS
TTGAAAACGGGAGAAAACGA+TGG 0.643487 6:+1879589 MsG0680030413.01.T01:CDS
AGTCCACAAATGTCAAGGAG+GGG 0.647484 6:+1881356 MsG0680030413.01.T01:CDS
CTGATTGAAGTAGTGAAAGG+AGG 0.649899 6:-1881137 None:intergenic
TCGGTACCCTGTGACAGAGA+TGG 0.651603 6:-1881737 None:intergenic
TGTTCAAGAAGCTGTAAATG+AGG 0.656142 6:+1880290 MsG0680030413.01.T01:CDS
AAGCTGAACCTGGAACTGGA+AGG 0.657278 6:+1881465 MsG0680030413.01.T01:CDS
TATTGAGGTACCAATAGTGG+AGG 0.665817 6:+1879870 MsG0680030413.01.T01:CDS
GATACAGAGACTGTAAGAGG+TGG 0.665933 6:+1880942 MsG0680030413.01.T01:CDS
CATCAGCGGTGGGAGCGGAG+AGG 0.666693 6:+1881034 MsG0680030413.01.T01:CDS
CAGTTGAAGCACCATCCCAA+GGG 0.667937 6:+1880658 MsG0680030413.01.T01:CDS
ACCCTGTGACAGAGATGGTG+TGG 0.668589 6:-1881732 None:intergenic
GGAAAAGAAAGCTGTGAGAG+GGG 0.669761 6:+1880963 MsG0680030413.01.T01:CDS
GATGAATGAGAAGGATGGTG+AGG 0.670117 6:+1879807 MsG0680030413.01.T01:CDS
GTAATGAGAACATCAGCGGT+GGG 0.671348 6:+1881024 MsG0680030413.01.T01:CDS
TGATGTTGAGATGAATGAGA+AGG 0.672736 6:+1879798 MsG0680030413.01.T01:CDS
CAAATCGCAGCATTCAGGTG+AGG 0.675770 6:+1880986 MsG0680030413.01.T01:CDS
TTAGTCCACAAATGTCAAGG+AGG 0.675813 6:+1881354 MsG0680030413.01.T01:CDS
GCCACACCATCTCTGTCACA+GGG 0.681280 6:+1881731 MsG0680030413.01.T01:CDS
TGGCACAGAGAGCATTTCGG+CGG 0.682197 6:+1880437 MsG0680030413.01.T01:CDS
CCTTGATCCAGAGAAAGTCA+AGG 0.684171 6:+1881289 MsG0680030413.01.T01:CDS
AATGACTGAGAAGGAGAGCG+CGG 0.688964 6:+1879915 MsG0680030413.01.T01:CDS
AGATTAAGAGTCATCCGTGG+TGG 0.700219 6:+1880082 MsG0680030413.01.T01:CDS
TCTGGTAATGAGAACATCAG+CGG 0.703698 6:+1881020 MsG0680030413.01.T01:CDS
GCTCGTGAAACCAAGACCAG+CGG 0.704734 6:+1881608 MsG0680030413.01.T01:CDS
AAGCATCGCTGACATTATGG+GGG 0.710590 6:+1880764 MsG0680030413.01.T01:CDS
ACGGGAAGGAGAATGAGGAG+GGG 0.710995 6:+1879716 MsG0680030413.01.T01:CDS
TCTTCTGAGATGAATAATGA+CGG 0.712707 6:+1879454 MsG0680030413.01.T01:CDS
TTTGGAGGATGTGAACAACA+TGG 0.726968 6:+1881877 MsG0680030413.01.T01:CDS
AGACACCCCATTATTCACCA+GGG 0.727389 6:-1879434 None:intergenic
TGATTCCCTGGTGAATAATG+GGG 0.729521 6:+1879429 MsG0680030413.01.T01:CDS
AGTTTCAAAGTATAACAGTG+AGG 0.743340 6:+1881202 MsG0680030413.01.T01:CDS
GAAAGATTAAGAGTCATCCG+TGG 0.746341 6:+1880079 MsG0680030413.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTGATATTGAAGTGAA+CGG + Chr6:1879697-1879716 MsG0680030413.01.T01:CDS 20.0%
!! TCATCAAAATTATCCTTAAA+AGG - Chr6:1880231-1880250 None:intergenic 20.0%
!!! TAAGGATAATTTTGATGATA+TGG + Chr6:1880233-1880252 MsG0680030413.01.T01:CDS 20.0%
! ATATTGATATTGAAGTGAAC+GGG + Chr6:1879698-1879717 MsG0680030413.01.T01:CDS 25.0%
! TAGTTTAGCTGAAAATGTTA+TGG + Chr6:1879300-1879319 MsG0680030413.01.T01:CDS 25.0%
!! ATATAAGTTACCTTGTTATG+AGG + Chr6:1880587-1880606 MsG0680030413.01.T01:CDS 25.0%
!!! GATAATTTTGATGATATGGT+GGG + Chr6:1880237-1880256 MsG0680030413.01.T01:CDS 25.0%
AAAAATTCAGGAATCAAGGA+AGG + Chr6:1880396-1880415 MsG0680030413.01.T01:CDS 30.0%
AAAAGGGTGAAAATTGTGAT+GGG + Chr6:1879836-1879855 MsG0680030413.01.T01:CDS 30.0%
AACAAAGATGACAATTGTGA+TGG + Chr6:1879943-1879962 MsG0680030413.01.T01:CDS 30.0%
ACAAAGATGACAATTGTGAT+GGG + Chr6:1879944-1879963 MsG0680030413.01.T01:CDS 30.0%
AGATGTTGATGCAAAAGATA+AGG + Chr6:1880793-1880812 MsG0680030413.01.T01:CDS 30.0%
AGTTTCAAAGTATAACAGTG+AGG + Chr6:1881202-1881221 MsG0680030413.01.T01:CDS 30.0%
GAAACAAAAGAATAGACTCT+TGG + Chr6:1880155-1880174 MsG0680030413.01.T01:CDS 30.0%
GTTGTCTTCTTTGTTGAAAA+CGG + Chr6:1879576-1879595 MsG0680030413.01.T01:CDS 30.0%
TATTGATATTGCTAGTGTTC+TGG + Chr6:1880512-1880531 MsG0680030413.01.T01:CDS 30.0%
TCAATCAGAGACTTTGTAAA+GGG + Chr6:1881152-1881171 MsG0680030413.01.T01:CDS 30.0%
TGATGAAAAAATTCAGACTG+TGG + Chr6:1879648-1879667 MsG0680030413.01.T01:CDS 30.0%
TGATGCAAAAGATAAGGAAT+GGG + Chr6:1880799-1880818 MsG0680030413.01.T01:CDS 30.0%
TTAAAAGGCTTCAATTGTGA+CGG - Chr6:1880216-1880235 None:intergenic 30.0%
TTCAATCAGAGACTTTGTAA+AGG + Chr6:1881151-1881170 MsG0680030413.01.T01:CDS 30.0%
TTGACGATTTGATTGATGAA+AGG + Chr6:1880025-1880044 MsG0680030413.01.T01:CDS 30.0%
TTGATGCAAAAGATAAGGAA+TGG + Chr6:1880798-1880817 MsG0680030413.01.T01:CDS 30.0%
TTGTCTTCTTTGTTGAAAAC+GGG + Chr6:1879577-1879596 MsG0680030413.01.T01:CDS 30.0%
! GACAAAAAACCCTTTTCATT+TGG - Chr6:1881086-1881105 None:intergenic 30.0%
! GCGAATTTTTGACAGAATTT+CGG - Chr6:1881324-1881343 None:intergenic 30.0%
! TCAGCTTTTTATCTCTCAAA+AGG + Chr6:1880561-1880580 MsG0680030413.01.T01:CDS 30.0%
!! ACTGATTCTGAAGTGAATAA+TGG + Chr6:1879553-1879572 MsG0680030413.01.T01:CDS 30.0%
!! CTGATTCTGAAGTGAATAAT+GGG + Chr6:1879554-1879573 MsG0680030413.01.T01:CDS 30.0%
!! GGATAATTTTGATGATATGG+TGG + Chr6:1880236-1880255 MsG0680030413.01.T01:CDS 30.0%
!! TCTTCTGAGATGAATAATGA+CGG + Chr6:1879454-1879473 MsG0680030413.01.T01:CDS 30.0%
AATGATTCCCTGGTGAATAA+TGG + Chr6:1879427-1879446 MsG0680030413.01.T01:CDS 35.0%
ACTTTGATGGAACATTTGCT+TGG + Chr6:1880184-1880203 MsG0680030413.01.T01:CDS 35.0%
ATGATTCCCTGGTGAATAAT+GGG + Chr6:1879428-1879447 MsG0680030413.01.T01:CDS 35.0%
CCGAAAGAACCAAATGAAAA+GGG + Chr6:1881074-1881093 MsG0680030413.01.T01:CDS 35.0%
CGATATTGAAATGACTGAGA+AGG + Chr6:1879906-1879925 MsG0680030413.01.T01:CDS 35.0%
CTGGTTGCAATTAAGTCTAA+GGG + Chr6:1880842-1880861 MsG0680030413.01.T01:CDS 35.0%
GAAAAGGGTGAAAATTGTGA+TGG + Chr6:1879835-1879854 MsG0680030413.01.T01:CDS 35.0%
GACTATTGAGGATTCAATAG+TGG + Chr6:1879975-1879994 MsG0680030413.01.T01:CDS 35.0%
GCTGAAAATGTTATGGTTGA+AGG + Chr6:1879307-1879326 MsG0680030413.01.T01:CDS 35.0%
TATTGAGGATTCAATAGTGG+AGG + Chr6:1879978-1879997 MsG0680030413.01.T01:CDS 35.0%
TCTACCTTTGTCTTGAAATC+AGG - Chr6:1881839-1881858 None:intergenic 35.0%
TCTCTGATTGAAGTAGTGAA+AGG - Chr6:1881143-1881162 None:intergenic 35.0%
TCTGGTTGCAATTAAGTCTA+AGG + Chr6:1880841-1880860 MsG0680030413.01.T01:CDS 35.0%
TCTTTCTTCTTGTCTTGTGA+AGG - Chr6:1881695-1881714 None:intergenic 35.0%
TGAAAAAATTGCGACTGTTG+AGG + Chr6:1879747-1879766 MsG0680030413.01.T01:CDS 35.0%
TGATGTTGAGATGAATGAGA+AGG + Chr6:1879798-1879817 MsG0680030413.01.T01:CDS 35.0%
TGTGAGAAGAAAGTCAAAGA+AGG + Chr6:1879625-1879644 MsG0680030413.01.T01:CDS 35.0%
TGTTCAAGAAGCTGTAAATG+AGG + Chr6:1880290-1880309 MsG0680030413.01.T01:CDS 35.0%
TTCTCACTTGTTTCCACTAT+TGG - Chr6:1879775-1879794 None:intergenic 35.0%
! AAACTAGTTTCAACCCCAAA+TGG - Chr6:1879286-1879305 None:intergenic 35.0%
! AACTCTTTTCTCTTCTGAAC+TGG - Chr6:1880909-1880928 None:intergenic 35.0%
! AGTTCTCTCCTTTCTTTTCT+TGG - Chr6:1881561-1881580 None:intergenic 35.0%
! GCTTTTTATCTCTCAAAAGG+AGG + Chr6:1880564-1880583 MsG0680030413.01.T01:CDS 35.0%
! GTCACAATTGAAGCCTTTTA+AGG + Chr6:1880215-1880234 MsG0680030413.01.T01:CDS 35.0%
! TACTTCCTGAACCTGATTTT+GGG - Chr6:1880719-1880738 None:intergenic 35.0%
! TGCTTTTCTGCTTTCTTCTA+CGG - Chr6:1880749-1880768 None:intergenic 35.0%
! TTGTCCTCCAGATTTTTCAT+CGG - Chr6:1881645-1881664 None:intergenic 35.0%
! TTTCTGTTGGCGATTTTGTT+TGG + Chr6:1880055-1880074 MsG0680030413.01.T01:CDS 35.0%
!! AAAAGCATCGCTGACATTAT+GGG + Chr6:1880762-1880781 MsG0680030413.01.T01:CDS 35.0%
!! CTGTTATACTTTGAAACTCG+AGG - Chr6:1881200-1881219 None:intergenic 35.0%
!! TTCTGTTGGCGATTTTGTTT+GGG + Chr6:1880056-1880075 MsG0680030413.01.T01:CDS 35.0%
!!! AGGGTTTTTTGTCAAGAGAA+AGG + Chr6:1881093-1881112 MsG0680030413.01.T01:CDS 35.0%
!!! CCCTTTTCATTTGGTTCTTT+CGG - Chr6:1881077-1881096 None:intergenic 35.0%
AAAAAAGACAACGACGATGC+AGG + Chr6:1880873-1880892 MsG0680030413.01.T01:CDS 40.0%
AAAAAGACAACGACGATGCA+GGG + Chr6:1880874-1880893 MsG0680030413.01.T01:CDS 40.0%
AACAGCATAGGTGAAAGCTT+TGG - Chr6:1880274-1880293 None:intergenic 40.0%
AAGAGAAAAGAGTTGCTTGC+AGG + Chr6:1880915-1880934 MsG0680030413.01.T01:CDS 40.0%
AAGCTGTAAATGAGGTTGGA+AGG + Chr6:1880298-1880317 MsG0680030413.01.T01:CDS 40.0%
ACTGATACAGAGACTGTAAG+AGG + Chr6:1880939-1880958 MsG0680030413.01.T01:CDS 40.0%
ACTTGAGAAAGTAACTCAGC+CGG - Chr6:1880474-1880493 None:intergenic 40.0%
AGAAGTTCATTGTATCGCGA+AGG + Chr6:1881419-1881438 MsG0680030413.01.T01:CDS 40.0%
AGAGACTTTGTAAAGGGAAG+AGG + Chr6:1881158-1881177 MsG0680030413.01.T01:CDS 40.0%
AGCTGGAAATATTGAAGGCT+CGG + Chr6:1880535-1880554 MsG0680030413.01.T01:CDS 40.0%
AGCTGTAAATGAGGTTGGAA+GGG + Chr6:1880299-1880318 MsG0680030413.01.T01:CDS 40.0%
AGGGTTTCTTTCTCATCATC+TGG - Chr6:1881272-1881291 None:intergenic 40.0%
ATATCACCTAGCGAAGATTC+TGG + Chr6:1881530-1881549 MsG0680030413.01.T01:CDS 40.0%
ATCGCCTGATTTCAAGACAA+AGG + Chr6:1881832-1881851 MsG0680030413.01.T01:CDS 40.0%
CAAGAAGCTGTAAATGAGGT+TGG + Chr6:1880294-1880313 MsG0680030413.01.T01:CDS 40.0%
CCAATGTTGGCGAAAAATTC+AGG + Chr6:1880384-1880403 MsG0680030413.01.T01:CDS 40.0%
CTGATTGAAGTAGTGAAAGG+AGG - Chr6:1881140-1881159 None:intergenic 40.0%
CTTCTTGTCTTGTGAAGGTT+TGG - Chr6:1881690-1881709 None:intergenic 40.0%
CTTGACTTTCTCTGGATCAA+GGG - Chr6:1881291-1881310 None:intergenic 40.0%
CTTTCTCATCATCTGGTGTT+TGG - Chr6:1881265-1881284 None:intergenic 40.0%
GAAAGATTAAGAGTCATCCG+TGG + Chr6:1880079-1880098 MsG0680030413.01.T01:CDS 40.0%
GAATACAATGAAGCTGAACC+TGG + Chr6:1881455-1881474 MsG0680030413.01.T01:CDS 40.0%
GACGATCAACTTAGATGTCT+CGG - Chr6:1881759-1881778 None:intergenic 40.0%
GATTGATCAAGCTCAGATTC+TGG - Chr6:1881503-1881522 None:intergenic 40.0%
GCCGAAAGAACCAAATGAAA+AGG + Chr6:1881073-1881092 MsG0680030413.01.T01:CDS 40.0%
GGCGAAAAATTCAGGAATCA+AGG + Chr6:1880392-1880411 MsG0680030413.01.T01:CDS 40.0%
GTAGAGTAGTCCTCTTCAAA+CGG - Chr6:1880684-1880703 None:intergenic 40.0%
GTCATACAGCAGAAACTTCA+AGG + Chr6:1881776-1881795 MsG0680030413.01.T01:CDS 40.0%
GTTGAGATGAATGAGAAGGA+TGG + Chr6:1879802-1879821 MsG0680030413.01.T01:CDS 40.0%
TACAGCTTCTTGAACAGCAT+AGG - Chr6:1880286-1880305 None:intergenic 40.0%
TAGTCCACAAATGTCAAGGA+GGG + Chr6:1881355-1881374 MsG0680030413.01.T01:CDS 40.0%
TCTGAAGGAGAATGATTCTC+AGG + Chr6:1879399-1879418 MsG0680030413.01.T01:CDS 40.0%
TGATATTGAAGTGAACGGGA+AGG + Chr6:1879702-1879721 MsG0680030413.01.T01:CDS 40.0%
TGATTCCCTGGTGAATAATG+GGG + Chr6:1879429-1879448 MsG0680030413.01.T01:CDS 40.0%
TGGAAAAGAAAGCTGTGAGA+GGG + Chr6:1880962-1880981 MsG0680030413.01.T01:CDS 40.0%
TGGGAAGATAGAGTCTATTG+AGG + Chr6:1879855-1879874 MsG0680030413.01.T01:CDS 40.0%
TTAGTCCACAAATGTCAAGG+AGG + Chr6:1881354-1881373 MsG0680030413.01.T01:CDS 40.0%
TTCTCGCTTATCTCCACAAT+TGG - Chr6:1879679-1879698 None:intergenic 40.0%
TTCTGCTTTCTTCTACGGTT+CGG - Chr6:1880744-1880763 None:intergenic 40.0%
TTGAAAACGGGAGAAAACGA+TGG + Chr6:1879589-1879608 MsG0680030413.01.T01:CDS 40.0%
TTGAAACTCGAGGAGAAAGT+AGG - Chr6:1881190-1881209 None:intergenic 40.0%
TTGTTATGAGGATCCCAAAC+GGG + Chr6:1880599-1880618 MsG0680030413.01.T01:CDS 40.0%
TTTGAAGGAGAATGACTCTC+AGG + Chr6:1879525-1879544 MsG0680030413.01.T01:CDS 40.0%
TTTGACAGAATTTCGGCTGA+AGG - Chr6:1881317-1881336 None:intergenic 40.0%
TTTGGAGGATGTGAACAACA+TGG + Chr6:1881877-1881896 MsG0680030413.01.T01:CDS 40.0%
! ACTTCCTGAACCTGATTTTG+GGG - Chr6:1880718-1880737 None:intergenic 40.0%
! CCTGAATTTTTCGCCAACAT+TGG - Chr6:1880387-1880406 None:intergenic 40.0%
! CTACTTCCTGAACCTGATTT+TGG - Chr6:1880720-1880739 None:intergenic 40.0%
! CTCTTGGTAGCTTACTTTGA+TGG + Chr6:1880171-1880190 MsG0680030413.01.T01:CDS 40.0%
! CTTGTTATGAGGATCCCAAA+CGG + Chr6:1880598-1880617 MsG0680030413.01.T01:CDS 40.0%
! GACTGAGGTTTCGATTTTGA+AGG + Chr6:1879510-1879529 MsG0680030413.01.T01:CDS 40.0%
! GTCTATTGAGGTACCAATAG+TGG + Chr6:1879867-1879886 MsG0680030413.01.T01:CDS 40.0%
! TATTGAGGTACCAATAGTGG+AGG + Chr6:1879870-1879889 MsG0680030413.01.T01:CDS 40.0%
! TCTGGAGCTGGAAATATTGA+AGG + Chr6:1880530-1880549 MsG0680030413.01.T01:CDS 40.0%
! TCTGGTAATGAGAACATCAG+CGG + Chr6:1881020-1881039 MsG0680030413.01.T01:CDS 40.0%
! TGCAAGTGATGATGAAGTTC+TGG + Chr6:1880823-1880842 MsG0680030413.01.T01:CDS 40.0%
! TTTGATGATATGGTGGGACA+AGG + Chr6:1880243-1880262 MsG0680030413.01.T01:CDS 40.0%
!! AAAGCATCGCTGACATTATG+GGG + Chr6:1880763-1880782 MsG0680030413.01.T01:CDS 40.0%
!! GAAAAGCATCGCTGACATTA+TGG + Chr6:1880761-1880780 MsG0680030413.01.T01:CDS 40.0%
!! GAAAGGTGTGACTTTTCTGT+TGG + Chr6:1880042-1880061 MsG0680030413.01.T01:CDS 40.0%
!! TCTGTTGGCGATTTTGTTTG+GGG + Chr6:1880057-1880076 MsG0680030413.01.T01:CDS 40.0%
AAGACACCCCATTATTCACC+AGG - Chr6:1879438-1879457 None:intergenic 45.0%
AAGGGGACCGATGAAAAATC+TGG + Chr6:1881635-1881654 MsG0680030413.01.T01:CDS 45.0%
AATGAAGCTGAACCTGGAAC+TGG + Chr6:1881461-1881480 MsG0680030413.01.T01:CDS 45.0%
AATGAGAAGGATGGTGAGGA+GGG + Chr6:1879811-1879830 MsG0680030413.01.T01:CDS 45.0%
ACAGCAGAAACTTCAAGGTC+TGG + Chr6:1881781-1881800 MsG0680030413.01.T01:CDS 45.0%
AGACACCCCATTATTCACCA+GGG - Chr6:1879437-1879456 None:intergenic 45.0%
AGATTAAGAGTCATCCGTGG+TGG + Chr6:1880082-1880101 MsG0680030413.01.T01:CDS 45.0%
AGTCCACAAATGTCAAGGAG+GGG + Chr6:1881356-1881375 MsG0680030413.01.T01:CDS 45.0%
CCTTGACTTTCTCTGGATCA+AGG - Chr6:1881292-1881311 None:intergenic 45.0%
CCTTGATCCAGAGAAAGTCA+AGG + Chr6:1881289-1881308 MsG0680030413.01.T01:CDS 45.0%
CGCTTAGTCCACAAATGTCA+AGG + Chr6:1881351-1881370 MsG0680030413.01.T01:CDS 45.0%
GAAATCAGGCGATTTGTCGT+CGG - Chr6:1881825-1881844 None:intergenic 45.0%
GAAGGAACCTTGACTTTCTC+TGG - Chr6:1881299-1881318 None:intergenic 45.0%
GACTGTGGAGATTCCAATTG+TGG + Chr6:1879663-1879682 MsG0680030413.01.T01:CDS 45.0%
GACTGTTGAGGTTCCAATAG+TGG + Chr6:1879759-1879778 MsG0680030413.01.T01:CDS 45.0%
GATACAGAGACTGTAAGAGG+TGG + Chr6:1880942-1880961 MsG0680030413.01.T01:CDS 45.0%
GATGAATGAGAAGGATGGTG+AGG + Chr6:1879807-1879826 MsG0680030413.01.T01:CDS 45.0%
GCAGGAGAAGAATGAGGTTA+AGG + Chr6:1879336-1879355 MsG0680030413.01.T01:CDS 45.0%
GGAAAAGAAAGCTGTGAGAG+GGG + Chr6:1880963-1880982 MsG0680030413.01.T01:CDS 45.0%
GGTGAGGAAAAAGAAGCTTC+TGG + Chr6:1881002-1881021 MsG0680030413.01.T01:CDS 45.0%
GTAATGAGAACATCAGCGGT+GGG + Chr6:1881024-1881043 MsG0680030413.01.T01:CDS 45.0%
GTCTGAATTCGCTCCAATGT+TGG + Chr6:1880371-1880390 MsG0680030413.01.T01:CDS 45.0%
GTGGAAAAGAAAGCTGTGAG+AGG + Chr6:1880961-1880980 MsG0680030413.01.T01:CDS 45.0%
TATGGTTGAAGGTTCAGAGC+AGG + Chr6:1879318-1879337 MsG0680030413.01.T01:CDS 45.0%
TGGACCAGCCAAGAAAAGAA+AGG + Chr6:1881550-1881569 MsG0680030413.01.T01:CDS 45.0%
TGGGAAGATCGAGACTATTG+AGG + Chr6:1879963-1879982 MsG0680030413.01.T01:CDS 45.0%
TTATGATCCGTCTGATGCGT+CGG + Chr6:1880116-1880135 MsG0680030413.01.T01:CDS 45.0%
TTCAGAGCAGGAGAAGAATG+AGG + Chr6:1879330-1879349 MsG0680030413.01.T01:CDS 45.0%
TTGACCCCAAAATCAGGTTC+AGG + Chr6:1880711-1880730 MsG0680030413.01.T01:CDS 45.0%
TTTCTCTTCCTTCCAGTTCC+AGG - Chr6:1881476-1881495 None:intergenic 45.0%
! AAGCATCGCTGACATTATGG+GGG + Chr6:1880764-1880783 MsG0680030413.01.T01:CDS 45.0%
! AAGGCTTCAATTGTGACGGA+TGG - Chr6:1880212-1880231 None:intergenic 45.0%
! CAGTGAGGCATTTCAAGAGT+TGG + Chr6:1881217-1881236 MsG0680030413.01.T01:CDS 45.0%
! CGTTTGGGATCCTCATAACA+AGG - Chr6:1880600-1880619 None:intergenic 45.0%
! CTCTCCTTTCTTTTCTTGGC+TGG - Chr6:1881557-1881576 None:intergenic 45.0%
! TCAGGTTGTGAATGATTCCC+TGG + Chr6:1879417-1879436 MsG0680030413.01.T01:CDS 45.0%
! TTTGTAAAGGGAAGAGGTGC+TGG + Chr6:1881164-1881183 MsG0680030413.01.T01:CDS 45.0%
!! GAGTAGTGTTTTCGAGACTG+AGG + Chr6:1879495-1879514 MsG0680030413.01.T01:CDS 45.0%
!! GGTGTTTTTGTGCCTGATAG+TGG + Chr6:1880417-1880436 MsG0680030413.01.T01:CDS 45.0%
!! TAGTGGCACAGAGAGCATTT+CGG + Chr6:1880434-1880453 MsG0680030413.01.T01:CDS 45.0%
!! TATTGCTAGTGTTCTGGAGC+TGG + Chr6:1880518-1880537 MsG0680030413.01.T01:CDS 45.0%
!! TGTTTTCGAGACCGAGGTTT+CGG + Chr6:1879375-1879394 MsG0680030413.01.T01:CDS 45.0%
!!! GAACCTGATTTTGGGGTCAA+TGG - Chr6:1880711-1880730 None:intergenic 45.0%
AACGGGAAGGAGAATGAGGA+GGG + Chr6:1879715-1879734 MsG0680030413.01.T01:CDS 50.0%
AAGCTGAACCTGGAACTGGA+AGG + Chr6:1881465-1881484 MsG0680030413.01.T01:CDS 50.0%
AAGGTAGAGAGCGAGGTGAA+AGG + Chr6:1881851-1881870 MsG0680030413.01.T01:CDS 50.0%
AATGACTGAGAAGGAGAGCG+CGG + Chr6:1879915-1879934 MsG0680030413.01.T01:CDS 50.0%
AGCGGAGAGGAAAACGATGA+AGG + Chr6:1881047-1881066 MsG0680030413.01.T01:CDS 50.0%
AGTGAACGGGAAGGAGAATG+AGG + Chr6:1879711-1879730 MsG0680030413.01.T01:CDS 50.0%
CAAATCGCAGCATTCAGGTG+AGG + Chr6:1880986-1881005 MsG0680030413.01.T01:CDS 50.0%
CAAGACAAAGGTAGAGAGCG+AGG + Chr6:1881844-1881863 MsG0680030413.01.T01:CDS 50.0%
CTCCTTCAGAACCGAAACCT+CGG - Chr6:1879389-1879408 None:intergenic 50.0%
CTCTCACTTGCCTCCACTAT+TGG - Chr6:1879883-1879902 None:intergenic 50.0%
CTGCCATTGACCCCAAAATC+AGG + Chr6:1880705-1880724 MsG0680030413.01.T01:CDS 50.0%
GAATGAGAAGGATGGTGAGG+AGG + Chr6:1879810-1879829 MsG0680030413.01.T01:CDS 50.0%
GATGGTGAGGAGGGAGAAAA+GGG + Chr6:1879820-1879839 MsG0680030413.01.T01:CDS 50.0%
GCGGAGAGGAAAACGATGAA+GGG + Chr6:1881048-1881067 MsG0680030413.01.T01:CDS 50.0%
GGGACCGATGAAAAATCTGG+AGG + Chr6:1881638-1881657 MsG0680030413.01.T01:CDS 50.0%
GGTAATGAGAACATCAGCGG+TGG + Chr6:1881023-1881042 MsG0680030413.01.T01:CDS 50.0%
TCAAGTCCGAGAACCCGTTT+GGG - Chr6:1880615-1880634 None:intergenic 50.0%
TTCAAGTCCGAGAACCCGTT+TGG - Chr6:1880616-1880635 None:intergenic 50.0%
TTCGGCGGTTACACTTGAAC+CGG + Chr6:1880452-1880471 MsG0680030413.01.T01:CDS 50.0%
! AAATGAGGTTGGAAGGGTGC+TGG + Chr6:1880305-1880324 MsG0680030413.01.T01:CDS 50.0%
! ATGCTCTCTGTGCCACTATC+AGG - Chr6:1880432-1880451 None:intergenic 50.0%
! CAGTTGAAGCACCATCCCAA+GGG + Chr6:1880658-1880677 MsG0680030413.01.T01:CDS 50.0%
! CGAGGTGAAAGGTCTTTTGG+AGG + Chr6:1881862-1881881 MsG0680030413.01.T01:CDS 50.0%
! GAGCGAGGTGAAAGGTCTTT+TGG + Chr6:1881859-1881878 MsG0680030413.01.T01:CDS 50.0%
! GATGAGTCGTCCGTTTGTTG+TGG + Chr6:1880335-1880354 MsG0680030413.01.T01:CDS 50.0%
!! GAGTAGTGTTTTCGAGACCG+AGG + Chr6:1879369-1879388 MsG0680030413.01.T01:CDS 50.0%
AACCAAGACCAGCGGCAAGA+AGG + Chr6:1881616-1881635 MsG0680030413.01.T01:CDS 55.0%
ACCAAGACCAGCGGCAAGAA+GGG + Chr6:1881617-1881636 MsG0680030413.01.T01:CDS 55.0%
ACCCTGTGACAGAGATGGTG+TGG - Chr6:1881735-1881754 None:intergenic 55.0%
ACGGGAAGGAGAATGAGGAG+GGG + Chr6:1879716-1879735 MsG0680030413.01.T01:CDS 55.0%
AGCCACACCATCTCTGTCAC+AGG + Chr6:1881730-1881749 MsG0680030413.01.T01:CDS 55.0%
AGGGGCAAATCGCAGCATTC+AGG + Chr6:1880981-1881000 MsG0680030413.01.T01:CDS 55.0%
AGTCCTCTTCAAACGGCCCT+TGG - Chr6:1880677-1880696 None:intergenic 55.0%
AGTGGAGGCTAGTGAGAGCA+TGG + Chr6:1879993-1880012 MsG0680030413.01.T01:CDS 55.0%
ATCCCAAGGGCCGTTTGAAG+AGG + Chr6:1880671-1880690 MsG0680030413.01.T01:CDS 55.0%
CATCGCTGACATTATGGGGG+AGG + Chr6:1880767-1880786 MsG0680030413.01.T01:CDS 55.0%
GAACGGGAAGGAGAATGAGG+AGG + Chr6:1879714-1879733 MsG0680030413.01.T01:CDS 55.0%
GACGGATCATAAACCCGACC+TGG - Chr6:1880108-1880127 None:intergenic 55.0%
GAGATGGTGTGGCTGGAGTT+AGG - Chr6:1881724-1881743 None:intergenic 55.0%
GCAAGTTCCGACGCATCAGA+CGG - Chr6:1880126-1880145 None:intergenic 55.0%
GCCACACCATCTCTGTCACA+GGG + Chr6:1881731-1881750 MsG0680030413.01.T01:CDS 55.0%
GCTCGTGAAACCAAGACCAG+CGG + Chr6:1881608-1881627 MsG0680030413.01.T01:CDS 55.0%
GCTGGTCCAGAATCTTCGCT+AGG - Chr6:1881539-1881558 None:intergenic 55.0%
GGATGGTGAGGAGGGAGAAA+AGG + Chr6:1879819-1879838 MsG0680030413.01.T01:CDS 55.0%
GTCCTCTTCAAACGGCCCTT+GGG - Chr6:1880676-1880695 None:intergenic 55.0%
GTGCCCCTCCTTGACATTTG+TGG - Chr6:1881362-1881381 None:intergenic 55.0%
TCGGTACCCTGTGACAGAGA+TGG - Chr6:1881740-1881759 None:intergenic 55.0%
TCTTCAAACGGCCCTTGGGA+TGG - Chr6:1880672-1880691 None:intergenic 55.0%
TGTGACAGAGATGGTGTGGC+TGG - Chr6:1881731-1881750 None:intergenic 55.0%
! GACCGAGGTTTCGGTTCTGA+AGG + Chr6:1879384-1879403 MsG0680030413.01.T01:CDS 55.0%
! GAGGATCCCAAACGGGTTCT+CGG + Chr6:1880606-1880625 MsG0680030413.01.T01:CDS 55.0%
! GCAGTTGAAGCACCATCCCA+AGG + Chr6:1880657-1880676 MsG0680030413.01.T01:CDS 55.0%
!! AGTCGTCCGTTTGTTGTGGC+GGG + Chr6:1880339-1880358 MsG0680030413.01.T01:CDS 55.0%
!! GAGTCGTCCGTTTGTTGTGG+CGG + Chr6:1880338-1880357 MsG0680030413.01.T01:CDS 55.0%
!! TGGCACAGAGAGCATTTCGG+CGG + Chr6:1880437-1880456 MsG0680030413.01.T01:CDS 55.0%
AAGAGTCATCCGTGGTGGCC+AGG + Chr6:1880087-1880106 MsG0680030413.01.T01:CDS 60.0%
CCAAGACCAGCGGCAAGAAG+GGG + Chr6:1881618-1881637 MsG0680030413.01.T01:CDS 60.0%
GAGAACATCAGCGGTGGGAG+CGG + Chr6:1881029-1881048 MsG0680030413.01.T01:CDS 60.0%
GTCTCCCCCGCCACAACAAA+CGG - Chr6:1880348-1880367 None:intergenic 60.0%
TAAACCCGACCTGGCCACCA+CGG - Chr6:1880099-1880118 None:intergenic 60.0%
! ACTGAGAAGGAGAGCGCGGA+AGG + Chr6:1879919-1879938 MsG0680030413.01.T01:CDS 60.0%
!! GTCGTCCGTTTGTTGTGGCG+GGG + Chr6:1880340-1880359 MsG0680030413.01.T01:CDS 60.0%
!! TCGTCCGTTTGTTGTGGCGG+GGG + Chr6:1880341-1880360 MsG0680030413.01.T01:CDS 60.0%
ATCGGTCCCCTTCTTGCCGC+TGG - Chr6:1881627-1881646 None:intergenic 65.0%
GTCATCCGTGGTGGCCAGGT+CGG + Chr6:1880091-1880110 MsG0680030413.01.T01:CDS 65.0%
TCATCCGTGGTGGCCAGGTC+GGG + Chr6:1880092-1880111 MsG0680030413.01.T01:CDS 65.0%
! CCCCTTCTTGCCGCTGGTCT+TGG - Chr6:1881621-1881640 None:intergenic 65.0%
CATCAGCGGTGGGAGCGGAG+AGG + Chr6:1881034-1881053 MsG0680030413.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 1879277 1881919 1879277 ID=MsG0680030413.01;Name=MsG0680030413.01
Chr6 mRNA 1879277 1881919 1879277 ID=MsG0680030413.01.T01;Parent=MsG0680030413.01;Name=MsG0680030413.01.T01;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|880
Chr6 exon 1879277 1881919 1879277 ID=MsG0680030413.01.T01:exon:2768;Parent=MsG0680030413.01.T01
Chr6 CDS 1879277 1881919 1879277 ID=MsG0680030413.01.T01:cds;Parent=MsG0680030413.01.T01
Gene Sequence

>MsG0680030413.01.T01

ATGGAACCATTTGGGGTTGAAACTAGTTTAGCTGAAAATGTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGGTTAAGGAAGTTGTTAAGAGTAGTGTTTTCGAGACCGAGGTTTCGGTTCTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCCCTGGTGAATAATGGGGTGTCTTCTGAGATGAATAATGACGGTGCTGTTGAAGTTTTTAAGAGTAGTGTTTTCGAGACTGAGGTTTCGATTTTGAAGGAGAATGACTCTCAGGTTGTGACTGATTCTGAAGTGAATAATGGGTTGTCTTCTTTGTTGAAAACGGGAGAAAACGATGGAAGCGTCGTCGTTTGTGAGAAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATTGTGGAGATAAGCGAGAATATTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAAATTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATGGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATAGAGTCTATTGAGGTACCAATAGTGGAGGCAAGTGAGAGCATCGATATTGAAATGACTGAGAAGGAGAGCGCGGAAGGAAACAAAGATGACAATTGTGATGGGAAGATCGAGACTATTGAGGATTCAATAGTGGAGGCTAGTGAGAGCATGGATGTTGAAGTTGACGATTTGATTGATGAAAGGTGTGACTTTTCTGTTGGCGATTTTGTTTGGGGAAAGATTAAGAGTCATCCGTGGTGGCCAGGTCGGGTTTATGATCCGTCTGATGCGTCGGAACTTGCTTTAAAGCTGAAACAAAAGAATAGACTCTTGGTAGCTTACTTTGATGGAACATTTGCTTGGTGCCATCCGTCACAATTGAAGCCTTTTAAGGATAATTTTGATGATATGGTGGGACAAGGTAGTTCCAAAGCTTTCACCTATGCTGTTCAAGAAGCTGTAAATGAGGTTGGAAGGGTGCTGGTTACAAAGATGAGTCGTCCGTTTGTTGTGGCGGGGGAGACTAAGTCTGAATTCGCTCCAATGTTGGCGAAAAATTCAGGAATCAAGGAAGGTGTTTTTGTGCCTGATAGTGGCACAGAGAGCATTTCGGCGGTTACACTTGAACCGGCTGAGTTACTTTCTCAAGTGAAACAAATTGCTGAAAGTATTGATATTGCTAGTGTTCTGGAGCTGGAAATATTGAAGGCTCGGATTTCAGCTTTTTATCTCTCAAAAGGAGGATATAAGTTACCTTGTTATGAGGATCCCAAACGGGTTCTCGGACTTGAAGATAAAGATGATGTCAACAATGCAGTTGAAGCACCATCCCAAGGGCCGTTTGAAGAGGACTACTCTACACTGCCATTGACCCCAAAATCAGGTTCAGGAAGTAGACCGAACCGTAGAAGAAAGCAGAAAAGCATCGCTGACATTATGGGGGAGGAAAAGATGTTGATGCAAAAGATAAGGAATGGGATGCAAGTGATGATGAAGTTCTGGTTGCAATTAAGTCTAAGGGTAGAAAAAAAAAAAGACAACGACGATGCAGGGACATCTGAACCAGTTCAGAAGAGAAAAGAGTTGCTTGCAGGTACTGATACAGAGACTGTAAGAGGTGGAAAAGAAAGCTGTGAGAGGGGCAAATCGCAGCATTCAGGTGAGGAAAAAGAAGCTTCTGGTAATGAGAACATCAGCGGTGGGAGCGGAGAGGAAAACGATGAAGGGAAGCCGAAAGAACCAAATGAAAAGGGTTTTTTGTCAAGAGAAAGGAAGAAAAGCAAGTATTTGTCACCTCCTTTCACTACTTCAATCAGAGACTTTGTAAAGGGAAGAGGTGCTGGCCTACTTTCTCCTCGAGTTTCAAAGTATAACAGTGAGGCATTTCAAGAGTTGGAACTTTCTGTTAGCTTGAATCACCAAACACCAGATGATGAGAAAGAAACCCTTGATCCAGAGAAAGTCAAGGTTCCTTCAGCCGAAATTCTGTCAAAAATTCGCGATGCAGCGCTTAGTCCACAAATGTCAAGGAGGGGCACTTCTTCTGATAGACTTGTAGACTTTGTTTCTGTCATGAGAAGTTCATTGTATCGCGAAGGATCATTACACAAAGAATACAATGAAGCTGAACCTGGAACTGGAAGGAAGAGAAAGAAGCCAGAATCTGAGCTTGATCAATCTGATAACATATCACCTAGCGAAGATTCTGGACCAGCCAAGAAAAGAAAGGAGAGAACTACAAGCTTGTCAAAAATGAAGAAGAGAGCTCGTGAAACCAAGACCAGCGGCAAGAAGGGGACCGATGAAAAATCTGGAGGACAACACACTGAAAGATTAAAGAAGTCCAAACCTTCACAAGACAAGAAGAAAGACAAGCTCCTAACTCCAGCCACACCATCTCTGTCACAGGGTACCGAGACATCTAAGTTGATCGTCATACAGCAGAAACTTCAAGGTCTGGTCTCAATGCTCGAATCATCCGACGACAAATCGCCTGATTTCAAGACAAAGGTAGAGAGCGAGGTGAAAGGTCTTTTGGAGGATGTGAACAACATGGTTGAATCTACTTCGTTGTGA

Protein sequence

>MsG0680030413.01.T01

MEPFGVETSLAENVMVEGSEQEKNEVKEVVKSSVFETEVSVLKENDSQVVNDSLVNNGVSSEMNNDGAVEVFKSSVFETEVSILKENDSQVVTDSEVNNGLSSLLKTGENDGSVVVCEKKVKEGDEKIQTVEIPIVEISENIDIEVNGKENEEGKKDEKIATVEVPIVETSENIDVEMNEKDGEEGEKGENCDGKIESIEVPIVEASESIDIEMTEKESAEGNKDDNCDGKIETIEDSIVEASESMDVEVDDLIDERCDFSVGDFVWGKIKSHPWWPGRVYDPSDASELALKLKQKNRLLVAYFDGTFAWCHPSQLKPFKDNFDDMVGQGSSKAFTYAVQEAVNEVGRVLVTKMSRPFVVAGETKSEFAPMLAKNSGIKEGVFVPDSGTESISAVTLEPAELLSQVKQIAESIDIASVLELEILKARISAFYLSKGGYKLPCYEDPKRVLGLEDKDDVNNAVEAPSQGPFEEDYSTLPLTPKSGSGSRPNRRRKQKSIADIMGEEKMLMQKIRNGMQVMMKFWLQLSLRVEKKKDNDDAGTSEPVQKRKELLAGTDTETVRGGKESCERGKSQHSGEEKEASGNENISGGSGEENDEGKPKEPNEKGFLSRERKKSKYLSPPFTTSIRDFVKGRGAGLLSPRVSKYNSEAFQELELSVSLNHQTPDDEKETLDPEKVKVPSAEILSKIRDAALSPQMSRRGTSSDRLVDFVSVMRSSLYREGSLHKEYNEAEPGTGRKRKKPESELDQSDNISPSEDSGPAKKRKERTTSLSKMKKRARETKTSGKKGTDEKSGGQHTERLKKSKPSQDKKKDKLLTPATPSLSQGTETSKLIVIQQKLQGLVSMLESSDDKSPDFKTKVESEVKGLLEDVNNMVESTSL*