AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015549.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015549.01.T01 MTR_3g072390 98.214 224 4 0 18 241 1 224 7.01e-165 454
MsG0380015549.01.T01 MTR_5g047050 35.795 176 100 4 78 241 62 236 1.90e-29 110
MsG0380015549.01.T01 MTR_4g109880 34.545 165 100 3 84 241 59 222 1.07e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015549.01.T01 AT1G44760 58.407 226 74 6 20 241 4 213 1.76e-81 243
MsG0380015549.01.T01 AT1G44760 58.407 226 74 6 20 241 75 284 2.84e-80 243
MsG0380015549.01.T01 AT2G03720 38.122 181 99 6 73 241 53 232 3.39e-29 110
MsG0380015549.01.T01 AT2G03720 39.157 166 90 5 86 241 1 165 3.70e-28 105
MsG0380015549.01.T01 AT1G69080 31.667 180 102 3 83 241 44 223 4.80e-27 104
MsG0380015549.01.T01 AT1G69080 34.706 170 96 5 83 241 44 209 3.85e-26 101
MsG0380015549.01.T01 AT5G17390 36.310 168 97 3 84 241 118 285 5.18e-25 100
MsG0380015549.01.T01 AT3G03290 34.524 168 100 3 84 241 107 274 2.38e-22 92.8
MsG0380015549.01.T01 AT4G13450 25.962 208 102 5 83 241 15 219 4.57e-15 72.0

Find 67 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAACTCATGTTGTTAATA+AGG 0.212222 3:-71732549 MsG0380015549.01.T01:CDS
GCAGAAGAACTTCTGGCTTT+TGG 0.227711 3:-71731412 MsG0380015549.01.T01:CDS
ATTCTAAGCATGCAATGATT+TGG 0.290584 3:-71732574 MsG0380015549.01.T01:CDS
TAGATCTCAAGAGGGGAAAA+TGG 0.321677 3:-71731356 MsG0380015549.01.T01:three_prime_UTR
CTCATCACTGTGGCCAGTTT+AGG 0.329869 3:+71732012 None:intergenic
AGAAAGAAGATGGCTTCTTT+TGG 0.334209 3:+71731950 None:intergenic
GATGAGCCAGGTAAAGAAAT+TGG 0.339137 3:-71731995 MsG0380015549.01.T01:CDS
CCAGGTGGCAGAAGAACTTC+TGG 0.346204 3:-71731419 MsG0380015549.01.T01:CDS
TTCTAAGCATGCAATGATTT+GGG 0.371229 3:-71732573 MsG0380015549.01.T01:CDS
ACATACAACAACAATAGTTT+AGG 0.386222 3:-71732719 MsG0380015549.01.T01:CDS
GGGTTTAACATTAACATGTA+TGG 0.388232 3:-71732662 MsG0380015549.01.T01:CDS
CTTGGAAATCAACTTCAAAT+AGG 0.389474 3:-71732757 MsG0380015549.01.T01:CDS
AGTTGTATTGAAAATTGAAA+TGG 0.391384 3:-71733381 MsG0380015549.01.T01:CDS
AAGAGAAGCCAAGGCAATAA+TGG 0.394438 3:-71731456 MsG0380015549.01.T01:CDS
ACTTACCTTGTTAATCATCA+TGG 0.402372 3:-71732464 MsG0380015549.01.T01:CDS
AGCCATCTTCTTTCTTTAGC+TGG 0.402605 3:-71731942 MsG0380015549.01.T01:intron
AGATCTCAAGAGGGGAAAAT+GGG 0.404854 3:-71731355 MsG0380015549.01.T01:three_prime_UTR
TGTAATTCAAGGACCTAAAC+TGG 0.413139 3:-71732025 MsG0380015549.01.T01:CDS
CAGCAGCACAGAGGAGTTTG+TGG 0.433556 3:-71731523 MsG0380015549.01.T01:CDS
CTAACTCATGTTGTTAATAA+GGG 0.434772 3:-71732548 MsG0380015549.01.T01:CDS
TCTGCCACCTGGTGCTGATA+AGG 0.435349 3:+71731430 None:intergenic
GTTGTATTGAAAATTGAAAT+GGG 0.439494 3:-71733380 MsG0380015549.01.T01:intron
AGAGTTATGGTAGTGGTTGA+TGG 0.444052 3:-71732605 MsG0380015549.01.T01:CDS
AATGCTGAGTGCTTGACAAT+AGG 0.444116 3:-71731486 MsG0380015549.01.T01:CDS
TGAGACAAATCTGAGTCAAA+TGG 0.450642 3:-71732687 MsG0380015549.01.T01:CDS
TAAGGTAGCCATTATTGCCT+TGG 0.456289 3:+71731448 None:intergenic
TAAGACTCAGAAGCACTTTG+AGG 0.458252 3:+71732494 None:intergenic
AAAATATTATTCACTAGCAT+TGG 0.464290 3:+71731161 None:intergenic
GATGGTGAGAAAGAGAGTTA+TGG 0.480958 3:-71732618 MsG0380015549.01.T01:CDS
TGGCTTGCAATCTTTGCAAA+GGG 0.487254 3:+71732439 None:intergenic
ATTCACTAGCATTGGCAAGT+TGG 0.496266 3:+71731169 None:intergenic
GAAATTGGAGGTCTCTATCC+TGG 0.499739 3:-71731980 MsG0380015549.01.T01:CDS
GTGGAAGCACTTGTAATTCA+AGG 0.506797 3:-71732036 MsG0380015549.01.T01:CDS
AGACCTCCAATTTCTTTACC+TGG 0.507576 3:+71731989 None:intergenic
CCAGAAGTTCTTCTGCCACC+TGG 0.508759 3:+71731419 None:intergenic
TGGCCTGTCATAGGTGGAAG+TGG 0.514126 3:-71732055 MsG0380015549.01.T01:intron
CTTACCTTGTTAATCATCAT+GGG 0.523413 3:-71732463 MsG0380015549.01.T01:CDS
TTTGAGGCAGTTAAGTTCAA+AGG 0.525241 3:-71732783 MsG0380015549.01.T01:CDS
TTATGGGTAAGATTATTCTC+TGG 0.527325 3:-71731130 MsG0380015549.01.T01:three_prime_UTR
CTGGCTTGCAATCTTTGCAA+AGG 0.528141 3:+71732438 None:intergenic
TGAAGAGAGTTGTGGAATGA+TGG 0.529080 3:-71732636 MsG0380015549.01.T01:CDS
GAGGTCTCTATCCTGGTACT+TGG 0.534821 3:-71731973 MsG0380015549.01.T01:CDS
TACCAGCTAAAGAAAGAAGA+TGG 0.539360 3:+71731940 None:intergenic
AGTTAAGTTCAAAGGAGACT+TGG 0.544950 3:-71732775 MsG0380015549.01.T01:CDS
AGATGAGAATACAAATATCA+AGG 0.553739 3:+71731320 None:intergenic
ACTGGCCACAGTGATGAGCC+AGG 0.573013 3:-71732007 MsG0380015549.01.T01:CDS
TCAACTTCAAATAGGTGGAG+TGG 0.576570 3:-71732749 MsG0380015549.01.T01:CDS
ACAAATCTGAGTCAAATGGA+AGG 0.584700 3:-71732683 MsG0380015549.01.T01:CDS
GGAAATCAACTTCAAATAGG+TGG 0.587848 3:-71732754 MsG0380015549.01.T01:CDS
TACTAGTCTTAGATCTCAAG+AGG 0.588812 3:-71731365 MsG0380015549.01.T01:three_prime_UTR
CTGTTTGTTTACAGTCTCTG+TGG 0.592127 3:-71731561 MsG0380015549.01.T01:intron
GAGAAAGAGAGTTATGGTAG+TGG 0.598245 3:-71732612 MsG0380015549.01.T01:CDS
GGAGTGAGGAAGAGAAGCCA+AGG 0.601340 3:-71731465 MsG0380015549.01.T01:CDS
CAAATCTGAGTCAAATGGAA+GGG 0.609381 3:-71732682 MsG0380015549.01.T01:CDS
ACTAGTCTTAGATCTCAAGA+GGG 0.615258 3:-71731364 MsG0380015549.01.T01:three_prime_UTR
CAGCAGCTGCAGCAGCACAG+AGG 0.618197 3:-71731532 MsG0380015549.01.T01:CDS
ATGGCTACCTTATCAGCACC+AGG 0.619844 3:-71731437 MsG0380015549.01.T01:CDS
TATGGAAATGAAGAGAGTTG+TGG 0.622956 3:-71732644 MsG0380015549.01.T01:CDS
GAGCCAGGTAAAGAAATTGG+AGG 0.635543 3:-71731992 MsG0380015549.01.T01:CDS
GATCTCAAGAGGGGAAAATG+GGG 0.639595 3:-71731354 MsG0380015549.01.T01:three_prime_UTR
TTGCAAAGATTGCAAGCCAG+AGG 0.640746 3:-71732435 MsG0380015549.01.T01:intron
CTTTACCTGGCTCATCACTG+TGG 0.657425 3:+71732002 None:intergenic
GGGACCCATGATGATTAACA+AGG 0.668758 3:+71732459 None:intergenic
AGTGCTTGACAATAGGAGTG+AGG 0.688153 3:-71731479 MsG0380015549.01.T01:CDS
GGTTGCATAAATAAGGCACA+AGG 0.702121 3:-71732838 MsG0380015549.01.T01:intron
CTAGTCTTAGATCTCAAGAG+GGG 0.706285 3:-71731363 MsG0380015549.01.T01:three_prime_UTR
GCTACCTTATCAGCACCAGG+TGG 0.765926 3:-71731434 MsG0380015549.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTAGGAAAATAATTTA+TGG + Chr3:71732208-71732227 None:intergenic 15.0%
!!! AATATTTTTACTCATGTTAT+GGG - Chr3:71733285-71733304 MsG0380015549.01.T01:intron 15.0%
!!! ATTTTTTAAAACAAGACAAT+TGG + Chr3:71732766-71732785 None:intergenic 15.0%
!!! TAATATTTTTACTCATGTTA+TGG - Chr3:71733284-71733303 MsG0380015549.01.T01:intron 15.0%
!!! TTGTAATCTTTATTTGTTTT+TGG + Chr3:71731230-71731249 None:intergenic 15.0%
!!! TTTTTTAAAACAAGACAATT+GGG + Chr3:71732765-71732784 None:intergenic 15.0%
!! AAAATATTATTCACTAGCAT+TGG + Chr3:71733273-71733292 None:intergenic 20.0%
!! AATTAGTTGAAAAGAGAAAA+AGG + Chr3:71732176-71732195 None:intergenic 20.0%
!! AATTTACTATTGTCAATTAG+AGG + Chr3:71732706-71732725 None:intergenic 20.0%
!! AGATTATTACTTACTATAGA+TGG + Chr3:71731492-71731511 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - Chr3:71731050-71731069 MsG0380015549.01.T01:three_prime_UTR 20.0%
!! ATTAGTTGAAAAGAGAAAAA+GGG + Chr3:71732175-71732194 None:intergenic 20.0%
!! GATTATTACTTACTATAGAT+GGG + Chr3:71731491-71731510 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - Chr3:71731051-71731070 MsG0380015549.01.T01:three_prime_UTR 20.0%
!! TAATTATTGTATTATGAGTC+AGG - Chr3:71731184-71731203 MsG0380015549.01.T01:three_prime_UTR 20.0%
!!! ATTTGTTTTTGGATAGATTT+TGG + Chr3:71731219-71731238 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - Chr3:71731087-71731106 MsG0380015549.01.T01:three_prime_UTR 20.0%
!!! TAATAAGTCTTGTCATTTTA+AGG - Chr3:71733200-71733219 MsG0380015549.01.T01:intron 20.0%
!!! TTGTTCAATTGATAGTTAAT+TGG - Chr3:71732120-71732139 MsG0380015549.01.T01:intron 20.0%
!!! TTTTTAAAACAAGACAATTG+GGG + Chr3:71732764-71732783 None:intergenic 20.0%
! AAAGGTTACTGATATTGTTA+TGG - Chr3:71732356-71732375 MsG0380015549.01.T01:intron 25.0%
! ACATACAACAACAATAGTTT+AGG - Chr3:71731712-71731731 MsG0380015549.01.T01:intron 25.0%
! ACTAACTCATGTTGTTAATA+AGG - Chr3:71731882-71731901 MsG0380015549.01.T01:intron 25.0%
! AGATGAGAATACAAATATCA+AGG + Chr3:71733114-71733133 None:intergenic 25.0%
! AGCAATAATAGTTACATTTG+TGG - Chr3:71731572-71731591 MsG0380015549.01.T01:intron 25.0%
! CATCTAAAGAATAGAAAAGT+AGG + Chr3:71732222-71732241 None:intergenic 25.0%
! CTAACTCATGTTGTTAATAA+GGG - Chr3:71731883-71731902 MsG0380015549.01.T01:intron 25.0%
! GAAAAGCTGAAAATAAAACA+AGG + Chr3:71732281-71732300 None:intergenic 25.0%
! GATAGTTAATTGGAGTAATT+AGG - Chr3:71732130-71732149 MsG0380015549.01.T01:intron 25.0%
! TATCCTCAATACAAAGAAAA+AGG - Chr3:71732338-71732357 MsG0380015549.01.T01:intron 25.0%
! TTTCTTTGTATTGAGGATAA+GGG + Chr3:71732337-71732356 None:intergenic 25.0%
!! CAATTTACAATTTTCAACAG+AGG + Chr3:71732610-71732629 None:intergenic 25.0%
!! TAACCTTTTTCTTTGTATTG+AGG + Chr3:71732344-71732363 None:intergenic 25.0%
!! TTTTCTTTGTATTGAGGATA+AGG + Chr3:71732338-71732357 None:intergenic 25.0%
!!! ATACGTTTTTCTTGTTACTT+GGG - Chr3:71732804-71732823 MsG0380015549.01.T01:CDS 25.0%
!!! CTACTTTTCTATTCTTTAGA+TGG - Chr3:71732220-71732239 MsG0380015549.01.T01:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - Chr3:71731086-71731105 MsG0380015549.01.T01:three_prime_UTR 25.0%
ACTTACCTTGTTAATCATCA+TGG - Chr3:71731967-71731986 MsG0380015549.01.T01:CDS 30.0%
ATTCTAAGCATGCAATGATT+TGG - Chr3:71731857-71731876 MsG0380015549.01.T01:intron 30.0%
CATTTGTGGTTGCATAAATA+AGG - Chr3:71731586-71731605 MsG0380015549.01.T01:intron 30.0%
CTTACCTTGTTAATCATCAT+GGG - Chr3:71731968-71731987 MsG0380015549.01.T01:CDS 30.0%
CTTGGAAATCAACTTCAAAT+AGG - Chr3:71731674-71731693 MsG0380015549.01.T01:intron 30.0%
GAAAAACGTATGACATCAAA+AGG + Chr3:71732795-71732814 None:intergenic 30.0%
GGGTTTAACATTAACATGTA+TGG - Chr3:71731769-71731788 MsG0380015549.01.T01:intron 30.0%
TGTTGTAAATTGCTTGTGTT+TGG + Chr3:71732530-71732549 None:intergenic 30.0%
TTATGGGTAAGATTATTCTC+TGG - Chr3:71733301-71733320 MsG0380015549.01.T01:intron 30.0%
TTCTAAGCATGCAATGATTT+GGG - Chr3:71731858-71731877 MsG0380015549.01.T01:intron 30.0%
TTCTTTGTATTGAGGATAAG+GGG + Chr3:71732336-71732355 None:intergenic 30.0%
TTGTATTATGAGTCAGGTTA+TGG - Chr3:71731190-71731209 MsG0380015549.01.T01:three_prime_UTR 30.0%
! CATACGTTTTTCTTGTTACT+TGG - Chr3:71732803-71732822 MsG0380015549.01.T01:CDS 30.0%
! GTGATTTTCAAACATGTAGT+TGG + Chr3:71733243-71733262 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - Chr3:71731064-71731083 MsG0380015549.01.T01:three_prime_UTR 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - Chr3:71731065-71731084 MsG0380015549.01.T01:three_prime_UTR 30.0%
!!! TTTTAAGGCACTATGGTAAT+TGG - Chr3:71733215-71733234 MsG0380015549.01.T01:intron 30.0%
ACAAATCTGAGTCAAATGGA+AGG - Chr3:71731748-71731767 MsG0380015549.01.T01:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - Chr3:71731100-71731119 MsG0380015549.01.T01:three_prime_UTR 35.0%
AGAGCTTGAACTTGTAAACA+GGG - Chr3:71732577-71732596 MsG0380015549.01.T01:CDS 35.0%
AGTTAAGTTCAAAGGAGACT+TGG - Chr3:71731656-71731675 MsG0380015549.01.T01:intron 35.0%
ATATTGTTATGGCCTGTCAT+AGG - Chr3:71732367-71732386 MsG0380015549.01.T01:intron 35.0%
CAAATCTGAGTCAAATGGAA+GGG - Chr3:71731749-71731768 MsG0380015549.01.T01:intron 35.0%
CTAGTTGAATAGCTGAAAGA+GGG + Chr3:71731554-71731573 None:intergenic 35.0%
CTCAAAAATGAAGCTGAACT+TGG + Chr3:71731634-71731653 None:intergenic 35.0%
GAGATTTCACAAAGATCTAG+TGG - Chr3:71731311-71731330 MsG0380015549.01.T01:three_prime_UTR 35.0%
GGAAATCAACTTCAAATAGG+TGG - Chr3:71731677-71731696 MsG0380015549.01.T01:intron 35.0%
TACACTTAGCTGACATATCA+TGG + Chr3:71732652-71732671 None:intergenic 35.0%
TACCAGCTAAAGAAAGAAGA+TGG + Chr3:71732494-71732513 None:intergenic 35.0%
TAGAGCTTGAACTTGTAAAC+AGG - Chr3:71732576-71732595 MsG0380015549.01.T01:CDS 35.0%
TATGGAAATGAAGAGAGTTG+TGG - Chr3:71731787-71731806 MsG0380015549.01.T01:intron 35.0%
TCCATGATATGTCAGTTAAG+TGG - Chr3:71732551-71732570 MsG0380015549.01.T01:CDS 35.0%
TCTTTGTATTGAGGATAAGG+GGG + Chr3:71732335-71732354 None:intergenic 35.0%
TGAGACAAATCTGAGTCAAA+TGG - Chr3:71731744-71731763 MsG0380015549.01.T01:intron 35.0%
TGGTCAATTTATGTGCATGA+TGG + Chr3:71731347-71731366 None:intergenic 35.0%
TGTAATTCAAGGACCTAAAC+TGG - Chr3:71732406-71732425 MsG0380015549.01.T01:intron 35.0%
! AGAAAGAAGATGGCTTCTTT+TGG + Chr3:71732484-71732503 None:intergenic 35.0%
! TTGTGCAGATTAAAGTGTCA+CGG + Chr3:71731377-71731396 None:intergenic 35.0%
! TTTGAGGCAGTTAAGTTCAA+AGG - Chr3:71731648-71731667 MsG0380015549.01.T01:intron 35.0%
!! ACTAGTCTTAGATCTCAAGA+GGG - Chr3:71733067-71733086 MsG0380015549.01.T01:intron 35.0%
!! CAAGTTCAGCTTCATTTTTG+AGG - Chr3:71731632-71731651 MsG0380015549.01.T01:intron 35.0%
!! TACTAGTCTTAGATCTCAAG+AGG - Chr3:71733066-71733085 MsG0380015549.01.T01:intron 35.0%
!!! CTTGTCATTTTAAGGCACTA+TGG - Chr3:71733208-71733227 MsG0380015549.01.T01:intron 35.0%
AAACAAGACAATTGGGGTGA+TGG + Chr3:71732758-71732777 None:intergenic 40.0%
AAACCAAACCAAGTTACCTC+TGG + Chr3:71732015-71732034 None:intergenic 40.0%
AAGAGAAGCCAAGGCAATAA+TGG - Chr3:71732975-71732994 MsG0380015549.01.T01:intron 40.0%
AATGCTGAGTGCTTGACAAT+AGG - Chr3:71732945-71732964 MsG0380015549.01.T01:intron 40.0%
AGACCTCCAATTTCTTTACC+TGG + Chr3:71732445-71732464 None:intergenic 40.0%
AGAGGGGAAACGTAATAAGT+AGG + Chr3:71731411-71731430 None:intergenic 40.0%
AGATCTCAAGAGGGGAAAAT+GGG - Chr3:71733076-71733095 MsG0380015549.01.T01:intron 40.0%
AGCCATCTTCTTTCTTTAGC+TGG - Chr3:71732489-71732508 MsG0380015549.01.T01:CDS 40.0%
AGGGGAAACGTAATAAGTAG+GGG + Chr3:71731409-71731428 None:intergenic 40.0%
CTGTTTGTTTACAGTCTCTG+TGG - Chr3:71732870-71732889 MsG0380015549.01.T01:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - Chr3:71731101-71731120 MsG0380015549.01.T01:three_prime_UTR 40.0%
GAGAAAGAGAGTTATGGTAG+TGG - Chr3:71731819-71731838 MsG0380015549.01.T01:intron 40.0%
GAGGGGAAACGTAATAAGTA+GGG + Chr3:71731410-71731429 None:intergenic 40.0%
GATGAGCCAGGTAAAGAAAT+TGG - Chr3:71732436-71732455 MsG0380015549.01.T01:CDS 40.0%
GATGGTGAGAAAGAGAGTTA+TGG - Chr3:71731813-71731832 MsG0380015549.01.T01:intron 40.0%
GCCACTTAACTGACATATCA+TGG + Chr3:71732555-71732574 None:intergenic 40.0%
GCTAGTTGAATAGCTGAAAG+AGG + Chr3:71731555-71731574 None:intergenic 40.0%
GGTTGCATAAATAAGGCACA+AGG - Chr3:71731593-71731612 MsG0380015549.01.T01:intron 40.0%
TAAGGTAGCCATTATTGCCT+TGG + Chr3:71732986-71733005 None:intergenic 40.0%
TAGATCTCAAGAGGGGAAAA+TGG - Chr3:71733075-71733094 MsG0380015549.01.T01:intron 40.0%
TCAACTTCAAATAGGTGGAG+TGG - Chr3:71731682-71731701 MsG0380015549.01.T01:intron 40.0%
TGAAGAGAGTTGTGGAATGA+TGG - Chr3:71731795-71731814 MsG0380015549.01.T01:intron 40.0%
! TAAAGTGTCACGGGAATCTT+TGG + Chr3:71731367-71731386 None:intergenic 40.0%
! TGGCTTGCAATCTTTGCAAA+GGG + Chr3:71731995-71732014 None:intergenic 40.0%
! TGTGCAGATTAAAGTGTCAC+GGG + Chr3:71731376-71731395 None:intergenic 40.0%
!! AGAGTTATGGTAGTGGTTGA+TGG - Chr3:71731826-71731845 MsG0380015549.01.T01:intron 40.0%
!! ATTCACTAGCATTGGCAAGT+TGG + Chr3:71733265-71733284 None:intergenic 40.0%
!! CTAGTCTTAGATCTCAAGAG+GGG - Chr3:71733068-71733087 MsG0380015549.01.T01:intron 40.0%
!! GTGGAAGCACTTGTAATTCA+AGG - Chr3:71732395-71732414 MsG0380015549.01.T01:intron 40.0%
!! TAAGACTCAGAAGCACTTTG+AGG + Chr3:71731940-71731959 None:intergenic 40.0%
AAGCCAGAGGTAACTTGGTT+TGG - Chr3:71732009-71732028 MsG0380015549.01.T01:CDS 45.0%
AGTGCTTGACAATAGGAGTG+AGG - Chr3:71732952-71732971 MsG0380015549.01.T01:intron 45.0%
AGTGTAGCAGAGGTTCAGTT+TGG + Chr3:71731516-71731535 None:intergenic 45.0%
ATTGCAAGCCAGAGGTAACT+TGG - Chr3:71732004-71732023 MsG0380015549.01.T01:CDS 45.0%
GAAATTGGAGGTCTCTATCC+TGG - Chr3:71732451-71732470 MsG0380015549.01.T01:CDS 45.0%
GAGCCAGGTAAAGAAATTGG+AGG - Chr3:71732439-71732458 MsG0380015549.01.T01:CDS 45.0%
GATCTCAAGAGGGGAAAATG+GGG - Chr3:71733077-71733096 MsG0380015549.01.T01:intron 45.0%
GGGACCCATGATGATTAACA+AGG + Chr3:71731975-71731994 None:intergenic 45.0%
TTGCAAAGATTGCAAGCCAG+AGG - Chr3:71731996-71732015 MsG0380015549.01.T01:CDS 45.0%
TTGTTATGGCCTGTCATAGG+TGG - Chr3:71732370-71732389 MsG0380015549.01.T01:intron 45.0%
! ATAGCTGAAAGAGGGAGTGT+AGG + Chr3:71731546-71731565 None:intergenic 45.0%
! CTGGCTTGCAATCTTTGCAA+AGG + Chr3:71731996-71732015 None:intergenic 45.0%
! TAGCTGAAAGAGGGAGTGTA+GGG + Chr3:71731545-71731564 None:intergenic 45.0%
!!! GCAGAAGAACTTCTGGCTTT+TGG - Chr3:71733019-71733038 MsG0380015549.01.T01:intron 45.0%
!! AATATTAACAATAAAAAAAT+TGG + Chr3:71731149-71731168 None:intergenic 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr3:71731439-71731458 None:intergenic 50.0%
AGAGAGAGAGGACATGTGAG+AGG + Chr3:71731429-71731448 None:intergenic 50.0%
AGAGAGAGGACATGTGAGAG+GGG + Chr3:71731427-71731446 None:intergenic 50.0%
ATGGCTACCTTATCAGCACC+AGG - Chr3:71732994-71733013 MsG0380015549.01.T01:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - Chr3:71731105-71731124 MsG0380015549.01.T01:three_prime_UTR 50.0%
CTCATCACTGTGGCCAGTTT+AGG + Chr3:71732422-71732441 None:intergenic 50.0%
CTTCCACTTCCACCTATGAC+AGG + Chr3:71732382-71732401 None:intergenic 50.0%
CTTTACCTGGCTCATCACTG+TGG + Chr3:71732432-71732451 None:intergenic 50.0%
GAGAGAGAGGACATGTGAGA+GGG + Chr3:71731428-71731447 None:intergenic 50.0%
GAGGTCTCTATCCTGGTACT+TGG - Chr3:71732458-71732477 MsG0380015549.01.T01:CDS 50.0%
! GCTTCTTTTGGCCAAGTACC+AGG + Chr3:71732472-71732491 None:intergenic 50.0%
AGGGAGCTAGAGTGTAGCAG+AGG + Chr3:71731526-71731545 None:intergenic 55.0%
CAGCAGCACAGAGGAGTTTG+TGG - Chr3:71732908-71732927 MsG0380015549.01.T01:intron 55.0%
CCAGAAGTTCTTCTGCCACC+TGG + Chr3:71733015-71733034 None:intergenic 55.0%
CCAGGTGGCAGAAGAACTTC+TGG - Chr3:71733012-71733031 MsG0380015549.01.T01:intron 55.0%
GCTACCTTATCAGCACCAGG+TGG - Chr3:71732997-71733016 MsG0380015549.01.T01:intron 55.0%
GGAGTGAGGAAGAGAAGCCA+AGG - Chr3:71732966-71732985 MsG0380015549.01.T01:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - Chr3:71731109-71731128 MsG0380015549.01.T01:three_prime_UTR 55.0%
TAGTAGTACTCCCTCCGTCC+CGG + Chr3:71731122-71731141 None:intergenic 55.0%
TGGCCTGTCATAGGTGGAAG+TGG - Chr3:71732376-71732395 MsG0380015549.01.T01:intron 55.0%
!! TCTGCCACCTGGTGCTGATA+AGG + Chr3:71733004-71733023 None:intergenic 55.0%
ACTGGCCACAGTGATGAGCC+AGG - Chr3:71732424-71732443 MsG0380015549.01.T01:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - Chr3:71731108-71731127 MsG0380015549.01.T01:three_prime_UTR 60.0%
CAGCAGCTGCAGCAGCACAG+AGG - Chr3:71732899-71732918 MsG0380015549.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 71731042 71733411 71731042 ID=MsG0380015549.01;Name=MsG0380015549.01
Chr3 mRNA 71731042 71733411 71731042 ID=MsG0380015549.01.T01;Parent=MsG0380015549.01;Name=MsG0380015549.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.5|0.75|0.33|0|4|365|241
Chr3 exon 71731042 71731569 71731042 ID=MsG0380015549.01.T01:exon:13935;Parent=MsG0380015549.01.T01
Chr3 exon 71731943 71732064 71731943 ID=MsG0380015549.01.T01:exon:13934;Parent=MsG0380015549.01.T01
Chr3 exon 71732436 71732845 71732436 ID=MsG0380015549.01.T01:exon:13933;Parent=MsG0380015549.01.T01
Chr3 exon 71733381 71733411 71733381 ID=MsG0380015549.01.T01:exon:13932;Parent=MsG0380015549.01.T01
Chr3 CDS 71733381 71733411 71733381 ID=MsG0380015549.01.T01:cds;Parent=MsG0380015549.01.T01
Chr3 CDS 71732436 71732845 71732436 ID=MsG0380015549.01.T01:cds;Parent=MsG0380015549.01.T01
Chr3 CDS 71731943 71732064 71731943 ID=MsG0380015549.01.T01:cds;Parent=MsG0380015549.01.T01
Chr3 CDS 71731407 71731569 71731407 ID=MsG0380015549.01.T01:cds;Parent=MsG0380015549.01.T01
Chr3 three_prime_UTR 71731042 71731406 71731042 ID=MsG0380015549.01.T01:three_prime_utr;Parent=MsG0380015549.01.T01
Gene Sequence

>MsG0380015549.01.T01

ATGATGAAAGTTGTATTGAAAATTGAAATGGGCACAAGGAGTTGTGAGAAAATGCCAAGTTCAGCTTCATTTTTGAGGCAGTTAAGTTCAAAGGAGACTTGGAAATCAACTTCAAATAGGTGGAGTGGAAAAAACACATACAACAACAATAGTTTAGGAGTTACTTGTGAGACAAATCTGAGTCAAATGGAAGGGTTTAACATTAACATGTATGGAAATGAAGAGAGTTGTGGAATGATGGTGAGAAAGAGAGTTATGGTAGTGGTTGATGGTACTTCACATTCTAAGCATGCAATGATTTGGGCACTAACTCATGTTGTTAATAAGGGTGATTTGTTGACTTTGCTTTACATTGTTTCTCCTCAAAGTGCTTCTGAGTCTTATTCTTCTACTTACCTTGTTAATCATCATGGGTCCCTTTGCAAAGATTGCAAGCCAGAGGTGGAAGTGGAAGCACTTGTAATTCAAGGACCTAAACTGGCCACAGTGATGAGCCAGGTAAAGAAATTGGAGGTCTCTATCCTGGTACTTGGCCAAAAGAAGCCATCTTCTTTCTTTAGCTGTCTCTGTGGAAGTAGCAGCAGCTGCAGCAGCACAGAGGAGTTTGTGGAGTACTGTATCAACAATGCTGAGTGCTTGACAATAGGAGTGAGGAAGAGAAGCCAAGGCAATAATGGCTACCTTATCAGCACCAGGTGGCAGAAGAACTTCTGGCTTTTGGCTTAG
Protein sequence

>MsG0380015549.01.T01

MMKVVLKIEMGTRSCEKMPSSASFLRQLSSKETWKSTSNRWSGKNTYNNNSLGVTCETNLSQMEGFNINMYGNEESCGMMVRKRVMVVVDGTSHSKHAMIWALTHVVNKGDLLTLLYIVSPQSASESYSSTYLVNHHGSLCKDCKPEVEVEALVIQGPKLATVMSQVKKLEVSILVLGQKKPSSFFSCLCGSSSSCSSTEEFVEYCINNAECLTIGVRKRSQGNNGYLISTRWQKNFWLLA*