AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016409.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016409.01.T01 MTR_3g088675 92.566 417 5 1 1 417 1 391 0.0 785
MsG0380016409.01.T01 MTR_7g084300 65.783 415 116 1 1 415 1 389 0.0 590
MsG0380016409.01.T01 MTR_3g083910 65.777 412 115 1 1 412 1 386 0.0 580
MsG0380016409.01.T01 MTR_3g083920 63.768 414 124 1 1 414 1 388 0.0 565
MsG0380016409.01.T01 MTR_5g007713 61.928 415 132 1 1 415 1 389 0.0 562
MsG0380016409.01.T01 MTR_5g007717 61.687 415 133 1 1 415 1 389 0.0 559
MsG0380016409.01.T01 MTR_7g016800 61.687 415 133 1 1 415 1 389 0.0 557
MsG0380016409.01.T01 MTR_7g016700 61.687 415 133 1 1 415 1 389 0.0 557
MsG0380016409.01.T01 MTR_7g016820 61.446 415 134 1 1 415 1 389 0.0 556
MsG0380016409.01.T01 MTR_7g016720 61.687 415 133 1 1 415 1 389 0.0 556
MsG0380016409.01.T01 MTR_1g098140 61.446 415 134 1 1 415 1 389 0.0 556
MsG0380016409.01.T01 MTR_5g007730 61.205 415 135 1 1 415 1 389 0.0 553
MsG0380016409.01.T01 MTR_7g016780 61.205 415 135 1 1 415 1 389 0.0 553
MsG0380016409.01.T01 MTR_5g007760 60.964 415 136 1 1 415 1 389 0.0 552
MsG0380016409.01.T01 MTR_1g097935 61.205 415 135 1 1 415 1 389 0.0 552
MsG0380016409.01.T01 MTR_1g097910 61.205 415 135 1 1 415 1 389 0.0 551
MsG0380016409.01.T01 MTR_2g058470 61.446 415 134 1 1 415 1 389 0.0 546
MsG0380016409.01.T01 MTR_3g086260 60.194 412 138 1 1 412 1 386 0.0 529
MsG0380016409.01.T01 MTR_7g113405 66.445 301 101 0 115 415 3 303 9.77e-157 444
MsG0380016409.01.T01 MTR_5g007740 62.270 326 123 0 90 415 1 326 9.83e-155 440
MsG0380016409.01.T01 MTR_5g007723 53.218 404 152 5 12 415 32 398 9.07e-148 426
MsG0380016409.01.T01 MTR_5g007770 57.333 300 95 2 96 395 1 267 1.47e-124 362
MsG0380016409.01.T01 MTR_3g088670 43.720 414 193 8 10 412 2 386 2.85e-117 347
MsG0380016409.01.T01 MTR_4g075560 37.562 402 216 5 11 408 13 383 1.18e-90 279
MsG0380016409.01.T01 MTR_4g078730 36.432 398 220 3 15 412 24 388 4.96e-89 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016409.01.T01 AT5G13930 65.366 410 115 2 4 412 9 392 0.0 572
MsG0380016409.01.T01 AT4G34850 36.675 409 229 4 9 415 12 392 3.99e-92 283
MsG0380016409.01.T01 AT4G00040 36.709 395 216 5 14 406 16 378 3.79e-87 270
MsG0380016409.01.T01 AT1G02050 36.750 400 219 5 15 412 24 391 5.50e-83 260
MsG0380016409.01.T01 AT4G34850 39.062 320 192 2 98 415 1 319 6.23e-81 252

Find 83 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATGTTGGGGTGTTCTTTC+AGG 0.147202 3:+83012436 None:intergenic
CTGATTGGAATTCTTTGTTT+TGG 0.233393 3:-83011188 MsG0380016409.01.T01:CDS
CAACCGGTGAAGGACTAAAA+TGG 0.237482 3:-83010987 MsG0380016409.01.T01:CDS
AGATGAGTTATCTCTGATTT+TGG 0.243050 3:+83012306 None:intergenic
GGCTGGACCACGAGCTCTTT+GGG 0.266908 3:+83013279 None:intergenic
TCCTTTATTTCATCTTGTTT+CGG 0.276839 3:-83011962 MsG0380016409.01.T01:CDS
ATCTAAATCCATCCACTAAA+AGG 0.277780 3:-83012218 MsG0380016409.01.T01:CDS
TCAATCCTCTTAATTATTGC+AGG 0.295802 3:+83011147 None:intergenic
ATTATTCTCAGCTAGATCTT+TGG 0.297192 3:+83012143 None:intergenic
AAAATTGTACCTTCAGAGTT+TGG 0.303132 3:+83011922 None:intergenic
TGCTTGTGTGATATTTATAT+TGG 0.311989 3:-83011049 MsG0380016409.01.T01:CDS
AAACACTTGGATTCGTTAGT+TGG 0.343024 3:-83012054 MsG0380016409.01.T01:CDS
TGGCTGGACCACGAGCTCTT+TGG 0.344653 3:+83013278 None:intergenic
TGGGATGAGAAGAAGGTCTA+TGG 0.353322 3:-83011025 MsG0380016409.01.T01:CDS
TTGAGTCATGTGTTCGCTTT+TGG 0.354978 3:+83013177 None:intergenic
GATAATGTTCCAAGTTTGAT+TGG 0.356163 3:-83011261 MsG0380016409.01.T01:CDS
CTTTCAGGATTTCTTCAGTT+AGG 0.362202 3:+83012451 None:intergenic
TGCAGTACCAATGGCTAGTA+TGG 0.370012 3:+83013255 None:intergenic
CAGTAAAATGGCATACTTAG+AGG 0.380073 3:-83013314 None:intergenic
GAGAAGAAGGTCTATGGAAG+AGG 0.385503 3:-83011019 MsG0380016409.01.T01:CDS
AACCGGTGAAGGACTAAAAT+GGG 0.386445 3:-83010986 MsG0380016409.01.T01:CDS
ACCCATTGGGAATTACTGAT+TGG 0.389300 3:-83011203 MsG0380016409.01.T01:CDS
GCCGAAACAAGATGAAATAA+AGG 0.403766 3:+83011961 None:intergenic
TCTTCGTAAGTTGATATGTT+GGG 0.407727 3:+83012423 None:intergenic
ATTAAAAGCCCTAAAAGAAT+GGG 0.410029 3:-83012334 MsG0380016409.01.T01:CDS
CTTACATATACGCTTCAGTT+TGG 0.424477 3:+83013147 None:intergenic
TTCTTCGTAAGTTGATATGT+TGG 0.438007 3:+83012422 None:intergenic
CATTAAAAGCCCTAAAAGAA+TGG 0.447370 3:-83012335 MsG0380016409.01.T01:CDS
GGACGTTCAAGTGTTGTGTC+TGG 0.454476 3:+83011982 None:intergenic
AGAAGAAGGTCTATGGAAGA+GGG 0.466093 3:-83011018 MsG0380016409.01.T01:CDS
TTAATTATTGCAGGACCACC+AGG 0.471368 3:+83011156 None:intergenic
TATGTCTTGGCGTACGTTGA+GGG 0.472735 3:+83012395 None:intergenic
TATTGGATGGGATGAGAAGA+AGG 0.475148 3:-83011032 MsG0380016409.01.T01:CDS
AATTAAGAGGATTGAAGAAA+CGG 0.479123 3:-83011139 MsG0380016409.01.T01:CDS
TACCACCAAGGTTGTTATGC+TGG 0.487367 3:-83012186 MsG0380016409.01.T01:CDS
AAGAGGATTGAAGAAACGGT+TGG 0.495072 3:-83011135 MsG0380016409.01.T01:CDS
GTGTGATATTTATATTGGAT+GGG 0.501361 3:-83011044 MsG0380016409.01.T01:CDS
ATATTCTCACCAATCAAACT+TGG 0.503125 3:+83011252 None:intergenic
GATTGGTAAATGCAATTGAC+TGG 0.503481 3:+83013229 None:intergenic
CTTCTTCAACTAATATGTCT+TGG 0.506389 3:+83012382 None:intergenic
TCCAATCAGTAATTCCCAAT+GGG 0.508827 3:+83011202 None:intergenic
TGTGTGATATTTATATTGGA+TGG 0.508830 3:-83011045 MsG0380016409.01.T01:CDS
GAAGAGGGGAAAACAACAAC+CGG 0.513774 3:-83011003 MsG0380016409.01.T01:CDS
GATCTAGCTGAGAATAATGT+TGG 0.522501 3:-83012138 MsG0380016409.01.T01:CDS
CTTCGTAAGTTGATATGTTG+GGG 0.523491 3:+83012424 None:intergenic
AATAATCAGTAAAATCAGAT+TGG 0.525517 3:+83013212 None:intergenic
ATCTTTGGCAAGACGAAGAA+CGG 0.525822 3:+83012158 None:intergenic
ATGGTTTCCATGGTCAAGCC+AGG 0.528547 3:+83010943 None:intergenic
TTAGTGAACATGGTCTATGT+TGG 0.543089 3:+83010906 None:intergenic
GTTGAAGAAGTGCCAAAGCT+AGG 0.544378 3:-83012369 MsG0380016409.01.T01:CDS
ATATGTCTTGGCGTACGTTG+AGG 0.545213 3:+83012394 None:intergenic
ACTTCCGGAGTTGACATGCC+TGG 0.548136 3:-83012270 MsG0380016409.01.T01:CDS
ATGCAAAGCAATGGTTTCCA+TGG 0.560009 3:+83010933 None:intergenic
AGTAAAATGGCATACTTAGA+GGG 0.565242 3:-83013313 None:intergenic
CCAATGGCTAGTATGGTGGC+TGG 0.566665 3:+83013262 None:intergenic
TGAAGGACACTTGCGTGAGG+TGG 0.567329 3:-83011304 MsG0380016409.01.T01:CDS
AGCACCAGGCATGTCAACTC+CGG 0.569943 3:+83012266 None:intergenic
TCTTGGCGTACGTTGAGGGA+TGG 0.570631 3:+83012399 None:intergenic
GAAGAAGGTCTATGGAAGAG+GGG 0.574893 3:-83011017 MsG0380016409.01.T01:CDS
CACCAGCATAACAACCTTGG+TGG 0.575612 3:+83012184 None:intergenic
GTGGTCCTGCAATAATTAAG+AGG 0.577617 3:-83011152 MsG0380016409.01.T01:CDS
GGGAAAACAACAACCGGTGA+AGG 0.579516 3:-83010997 MsG0380016409.01.T01:CDS
TTCCAATCAGTAATTCCCAA+TGG 0.580607 3:+83011201 None:intergenic
GACTGGAGTTGCAGTACCAA+TGG 0.581736 3:+83013246 None:intergenic
GAAGGACACTTGCGTGAGGT+GGG 0.582214 3:-83011303 MsG0380016409.01.T01:CDS
GGTGCTTCATCTGTGATCGT+TGG 0.587633 3:-83012012 MsG0380016409.01.T01:CDS
ATTTGGTCCTGGCTTGACCA+TGG 0.593007 3:-83010950 MsG0380016409.01.T01:CDS
ATGAGTTGATAATCAGCACC+AGG 0.598022 3:+83012252 None:intergenic
CCAGCCACCATACTAGCCAT+TGG 0.600696 3:-83013262 MsG0380016409.01.T01:CDS
TTCCACCAGCATAACAACCT+TGG 0.602278 3:+83012181 None:intergenic
GTTGGCGCTATGCAAAGCAA+TGG 0.612636 3:+83010924 None:intergenic
ACGATTCTACCAAACTCTGA+AGG 0.616163 3:-83011931 MsG0380016409.01.T01:intron
CACCAAGGTTGTTATGCTGG+TGG 0.646872 3:-83012183 MsG0380016409.01.T01:CDS
AATTGTGATGAAGTAAAAGA+CGG 0.647346 3:-83012680 MsG0380016409.01.T01:intron
CGAACACATGACTCAACTCA+AGG 0.651748 3:-83013170 MsG0380016409.01.T01:CDS
AGAGAGTCCCAAAGAGCTCG+TGG 0.660715 3:-83013286 MsG0380016409.01.T01:CDS
TAATTATTGCAGGACCACCA+GGG 0.666521 3:+83011157 None:intergenic
TTAAAAGCCCTAAAAGAATG+GGG 0.668431 3:-83012333 MsG0380016409.01.T01:CDS
TTATTTCAGAACACACAACA+AGG 0.673372 3:+83012106 None:intergenic
AGTACCAATGGCTAGTATGG+TGG 0.674401 3:+83013258 None:intergenic
AGGTTCATGTTATACCACCA+AGG 0.690009 3:-83012198 MsG0380016409.01.T01:CDS
ACCGGTGAAGGACTAAAATG+GGG 0.697537 3:-83010985 MsG0380016409.01.T01:CDS
TATTGAAGGACACTTGCGTG+AGG 0.726035 3:-83011307 MsG0380016409.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - Chr3:83012405-83012424 MsG0380016409.01.T01:CDS 0.0%
!! TATATATATATATATATATA+TGG - Chr3:83012404-83012423 MsG0380016409.01.T01:CDS 0.0%
!! ATATATATATATATATATGG+GGG - Chr3:83012439-83012458 MsG0380016409.01.T01:CDS 10.0%
!! TAAAAAAAAAAATACTGTTA+TGG + Chr3:83011351-83011370 None:intergenic 10.0%
!! TAATTAGAATATAAACAAAA+TGG - Chr3:83012731-83012750 MsG0380016409.01.T01:CDS 10.0%
!! TTAAAGACATAATATATATA+GGG + Chr3:83012834-83012853 None:intergenic 10.0%
!! TTTAAAGACATAATATATAT+AGG + Chr3:83012835-83012854 None:intergenic 10.0%
!!! ACTTTTTTTTTTTTTACAAT+AGG + Chr3:83011651-83011670 None:intergenic 10.0%
!!! ATTATTAGTCTTATATATAT+TGG + Chr3:83011137-83011156 None:intergenic 10.0%
!!! CATTTTTATAAGTATTATTA+AGG - Chr3:83012534-83012553 MsG0380016409.01.T01:intron 10.0%
!!! TATATATTATGTCTTTAAAA+CGG - Chr3:83012836-83012855 MsG0380016409.01.T01:intron 10.0%
!!! TCTAATTAATTTTAAATAGA+AGG + Chr3:83012719-83012738 None:intergenic 10.0%
!! GGTGTAATATAAAAAAATAA+TGG + Chr3:83011330-83011349 None:intergenic 15.0%
!! TAAAGACATAATATATATAG+GGG + Chr3:83012833-83012852 None:intergenic 15.0%
!!! ACAATTAAATAAGATTTTAG+TGG + Chr3:83011166-83011185 None:intergenic 15.0%
!!! ATTAATTTTGTTATCCAAAA+AGG - Chr3:83012330-83012349 MsG0380016409.01.T01:CDS 15.0%
!!! ATTCTTTTATTTTCTTTTGA+AGG - Chr3:83012880-83012899 MsG0380016409.01.T01:intron 15.0%
!!! CTATACATATTTTTCTTTAT+TGG - Chr3:83011695-83011714 MsG0380016409.01.T01:intron 15.0%
!!! CTTTTTTGTTTCTTTTTTTA+AGG - Chr3:83012665-83012684 MsG0380016409.01.T01:intron 15.0%
!!! TGTTTTAGTAAATTATAAGT+GGG - Chr3:83012754-83012773 MsG0380016409.01.T01:intron 15.0%
!!! TTTTTTTTACAATAGGAATT+AGG + Chr3:83011644-83011663 None:intergenic 15.0%
!! AAAGACATAATATATATAGG+GGG + Chr3:83012832-83012851 None:intergenic 20.0%
!! AATAATCAGTAAAATCAGAT+TGG + Chr3:83011004-83011023 None:intergenic 20.0%
!! ATTTATTGATGAATTCATGA+AGG + Chr3:83011565-83011584 None:intergenic 20.0%
!!! ACTTTTAAGGAAACAATATT+TGG + Chr3:83012604-83012623 None:intergenic 20.0%
!!! CATGTCTTAGTTTAAAATAT+TGG + Chr3:83011381-83011400 None:intergenic 20.0%
!!! CTACTTTTATTTTATAAAGC+AGG - Chr3:83011455-83011474 MsG0380016409.01.T01:intron 20.0%
!!! GTAATAAAGACAAACTTTTA+AGG + Chr3:83012617-83012636 None:intergenic 20.0%
!!! GTGTTTTAGTAAATTATAAG+TGG - Chr3:83012753-83012772 MsG0380016409.01.T01:intron 20.0%
! AATGAGTGTAAATAATCAAG+TGG + Chr3:83012518-83012537 None:intergenic 25.0%
! AATTAAGAGGATTGAAGAAA+CGG - Chr3:83013074-83013093 MsG0380016409.01.T01:intron 25.0%
! AATTGTGATGAAGTAAAAGA+CGG - Chr3:83011533-83011552 MsG0380016409.01.T01:intron 25.0%
! ATGAGTGTAAATAATCAAGT+GGG + Chr3:83012517-83012536 None:intergenic 25.0%
! ATTAAAAGCCCTAAAAGAAT+GGG - Chr3:83011879-83011898 MsG0380016409.01.T01:intron 25.0%
! GTGTGATATTTATATTGGAT+GGG - Chr3:83013169-83013188 MsG0380016409.01.T01:CDS 25.0%
! TGCTTGTGTGATATTTATAT+TGG - Chr3:83013164-83013183 MsG0380016409.01.T01:CDS 25.0%
! TGTGTGATATTTATATTGGA+TGG - Chr3:83013168-83013187 MsG0380016409.01.T01:CDS 25.0%
! TTGGATAACAAAATTAATCC+TGG + Chr3:83012328-83012347 None:intergenic 25.0%
!! AATATTTGGAATGATGAAAG+TGG + Chr3:83012590-83012609 None:intergenic 25.0%
!! ATATTTGGAATGATGAAAGT+GGG + Chr3:83012589-83012608 None:intergenic 25.0%
!! TAATGGACATGACAAATAAA+TGG + Chr3:83011313-83011332 None:intergenic 25.0%
!! TCCTTTATTTCATCTTGTTT+CGG - Chr3:83012251-83012270 MsG0380016409.01.T01:CDS 25.0%
!!! CAATTTTATTTGTGTTTACC+AGG - Chr3:83012307-83012326 MsG0380016409.01.T01:CDS 25.0%
!!! TGATTGGAATTCTTTGTTTT+GGG - Chr3:83013026-83013045 MsG0380016409.01.T01:intron 25.0%
!!! TTTCTTTATTGGTTCTGAAT+AGG - Chr3:83011706-83011725 MsG0380016409.01.T01:intron 25.0%
AAAAGACAATGACATGCTTA+AGG + Chr3:83012650-83012669 None:intergenic 30.0%
AAAATTGTACCTTCAGAGTT+TGG + Chr3:83012294-83012313 None:intergenic 30.0%
ACATGTGAATAAAATGCAAG+CGG + Chr3:83012377-83012396 None:intergenic 30.0%
ATATTCTCACCAATCAAACT+TGG + Chr3:83012964-83012983 None:intergenic 30.0%
ATCTAAATCCATCCACTAAA+AGG - Chr3:83011995-83012014 MsG0380016409.01.T01:CDS 30.0%
ATTATTCTCAGCTAGATCTT+TGG + Chr3:83012073-83012092 None:intergenic 30.0%
CATTAAAAGCCCTAAAAGAA+TGG - Chr3:83011878-83011897 MsG0380016409.01.T01:intron 30.0%
CTTCTTCAACTAATATGTCT+TGG + Chr3:83011834-83011853 None:intergenic 30.0%
GATAATGTTCCAAGTTTGAT+TGG - Chr3:83012952-83012971 MsG0380016409.01.T01:intron 30.0%
TAAGACATGCCAATTTGATT+TGG - Chr3:83011392-83011411 MsG0380016409.01.T01:intron 30.0%
TATATGTAAGCTCATGCATA+GGG - Chr3:83011079-83011098 MsG0380016409.01.T01:CDS 30.0%
TCAATCCTCTTAATTATTGC+AGG + Chr3:83013069-83013088 None:intergenic 30.0%
TTAAAAGCCCTAAAAGAATG+GGG - Chr3:83011880-83011899 MsG0380016409.01.T01:intron 30.0%
TTATTTCAGAACACACAACA+AGG + Chr3:83012110-83012129 None:intergenic 30.0%
! AAATGCATGAAAGCATGAAT+TGG + Chr3:83011256-83011275 None:intergenic 30.0%
! AAGACATGCCAATTTGATTT+GGG - Chr3:83011393-83011412 MsG0380016409.01.T01:intron 30.0%
! AATCCAAGTGTTTTTCATTG+GGG + Chr3:83012152-83012171 None:intergenic 30.0%
! AGATGAGTTATCTCTGATTT+TGG + Chr3:83011910-83011929 None:intergenic 30.0%
! CTCATATTTTGTTCAACTTC+CGG - Chr3:83011928-83011947 MsG0380016409.01.T01:intron 30.0%
! GAATCCAAGTGTTTTTCATT+GGG + Chr3:83012153-83012172 None:intergenic 30.0%
! GTATAACATGAACCTTTTAG+TGG + Chr3:83012010-83012029 None:intergenic 30.0%
! GTCTTTTACTTCATCACAAT+TGG + Chr3:83011534-83011553 None:intergenic 30.0%
!! AAACATGTTTTGAGTGAGTA+TGG - Chr3:83013129-83013148 MsG0380016409.01.T01:intron 30.0%
!! CTGATTGGAATTCTTTGTTT+TGG - Chr3:83013025-83013044 MsG0380016409.01.T01:intron 30.0%
!! TCTTCGTAAGTTGATATGTT+GGG + Chr3:83011793-83011812 None:intergenic 30.0%
!! TTCTTCGTAAGTTGATATGT+TGG + Chr3:83011794-83011813 None:intergenic 30.0%
!!! ATAACTGTTGTTACTTTTCG+TGG - Chr3:83012126-83012145 MsG0380016409.01.T01:CDS 30.0%
AAACACTTGGATTCGTTAGT+TGG - Chr3:83012159-83012178 MsG0380016409.01.T01:CDS 35.0%
AAGTGGGTGTAAATTAGTGA+AGG + Chr3:83012573-83012592 None:intergenic 35.0%
ACACCAACCTAAAAACACTA+AGG + Chr3:83012799-83012818 None:intergenic 35.0%
CTTACATATACGCTTCAGTT+TGG + Chr3:83011069-83011088 None:intergenic 35.0%
CTTTCAGGATTTCTTCAGTT+AGG + Chr3:83011765-83011784 None:intergenic 35.0%
GATCTAGCTGAGAATAATGT+TGG - Chr3:83012075-83012094 MsG0380016409.01.T01:CDS 35.0%
GATTGGTAAATGCAATTGAC+TGG + Chr3:83010987-83011006 None:intergenic 35.0%
GCCGAAACAAGATGAAATAA+AGG + Chr3:83012255-83012274 None:intergenic 35.0%
GTATATGTAAGCTCATGCAT+AGG - Chr3:83011078-83011097 MsG0380016409.01.T01:CDS 35.0%
TATTGCAGCCCAAATCAAAT+TGG + Chr3:83011404-83011423 None:intergenic 35.0%
TCCAATCAGTAATTCCCAAT+GGG + Chr3:83013014-83013033 None:intergenic 35.0%
TTAGTGAACATGGTCTATGT+TGG + Chr3:83013310-83013329 None:intergenic 35.0%
TTCCAATCAGTAATTCCCAA+TGG + Chr3:83013015-83013034 None:intergenic 35.0%
! AACATGAACCTTTTAGTGGA+TGG + Chr3:83012006-83012025 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - Chr3:83012789-83012808 MsG0380016409.01.T01:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + Chr3:83012808-83012789 None:intergenic 35.0%
! AGAAGAAACTTTTCACCCAT+TGG - Chr3:83012996-83013015 MsG0380016409.01.T01:intron 35.0%
! CATGTATATGTGCACTTTTG+GGG + Chr3:83011215-83011234 None:intergenic 35.0%
! CGAATCCAAGTGTTTTTCAT+TGG + Chr3:83012154-83012173 None:intergenic 35.0%
! GAAGAAACTTTTCACCCATT+GGG - Chr3:83012997-83013016 MsG0380016409.01.T01:intron 35.0%
! GCATGTATATGTGCACTTTT+GGG + Chr3:83011216-83011235 None:intergenic 35.0%
! TGCATGTATATGTGCACTTT+TGG + Chr3:83011217-83011236 None:intergenic 35.0%
! TTAGTTGGACAAGCACTTTT+TGG - Chr3:83012174-83012193 MsG0380016409.01.T01:CDS 35.0%
!! AATTTGATTTGGGCTGCAAT+AGG - Chr3:83011403-83011422 MsG0380016409.01.T01:intron 35.0%
!! CTAAAATGGGGTGTTTTGTT+TGG - Chr3:83013240-83013259 MsG0380016409.01.T01:CDS 35.0%
!! CTTCGTAAGTTGATATGTTG+GGG + Chr3:83011792-83011811 None:intergenic 35.0%
!!! TCTTTTGAAGGTGCTATTGA+AGG - Chr3:83012892-83012911 MsG0380016409.01.T01:intron 35.0%
AACCGGTGAAGGACTAAAAT+GGG - Chr3:83013227-83013246 MsG0380016409.01.T01:CDS 40.0%
AAGAGGATTGAAGAAACGGT+TGG - Chr3:83013078-83013097 MsG0380016409.01.T01:intron 40.0%
ACCCATTGGGAATTACTGAT+TGG - Chr3:83013010-83013029 MsG0380016409.01.T01:intron 40.0%
ACGATTCTACCAAACTCTGA+AGG - Chr3:83012282-83012301 MsG0380016409.01.T01:CDS 40.0%
AGAAGAAGGTCTATGGAAGA+GGG - Chr3:83013195-83013214 MsG0380016409.01.T01:CDS 40.0%
AGGTTCATGTTATACCACCA+AGG - Chr3:83012015-83012034 MsG0380016409.01.T01:CDS 40.0%
AGTGCACATATACATGCATG+CGG - Chr3:83011219-83011238 MsG0380016409.01.T01:CDS 40.0%
ATCTTTGGCAAGACGAAGAA+CGG + Chr3:83012058-83012077 None:intergenic 40.0%
ATGCAAAGCAATGGTTTCCA+TGG + Chr3:83013283-83013302 None:intergenic 40.0%
GTGGTCCTGCAATAATTAAG+AGG - Chr3:83013061-83013080 MsG0380016409.01.T01:intron 40.0%
TAATTATTGCAGGACCACCA+GGG + Chr3:83013059-83013078 None:intergenic 40.0%
TATTGGATGGGATGAGAAGA+AGG - Chr3:83013181-83013200 MsG0380016409.01.T01:CDS 40.0%
TGTTATCCAAAAAGGCCTAG+CGG - Chr3:83012338-83012357 MsG0380016409.01.T01:CDS 40.0%
TTAATTATTGCAGGACCACC+AGG + Chr3:83013060-83013079 None:intergenic 40.0%
! ATATGTTGGGGTGTTCTTTC+AGG + Chr3:83011780-83011799 None:intergenic 40.0%
! TGGTCTTCCCCATTCTTTTA+GGG + Chr3:83011890-83011909 None:intergenic 40.0%
! TTGAGTCATGTGTTCGCTTT+TGG + Chr3:83011039-83011058 None:intergenic 40.0%
!! ATGAGTTGATAATCAGCACC+AGG + Chr3:83011964-83011983 None:intergenic 40.0%
!! TTGGTCTTCCCCATTCTTTT+AGG + Chr3:83011891-83011910 None:intergenic 40.0%
!!! ATATGTGCACTTTTGGGGTA+TGG + Chr3:83011210-83011229 None:intergenic 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + Chr3:83012812-83012793 None:intergenic 40.0%
!!! GCACCTTAGTGTTTTTAGGT+TGG - Chr3:83012793-83012812 MsG0380016409.01.T01:intron 40.0%
!!! GTTTTGTTTGGATTTGGTCC+TGG - Chr3:83013252-83013271 MsG0380016409.01.T01:CDS 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + Chr3:83012811-83012792 None:intergenic 40.0%
!!! TGGGGTGTTTTGTTTGGATT+TGG - Chr3:83013246-83013265 MsG0380016409.01.T01:CDS 40.0%
ACCGGTGAAGGACTAAAATG+GGG - Chr3:83013228-83013247 MsG0380016409.01.T01:CDS 45.0%
ACGCCCACCTAAAAACACTA+AGG - Chr3:83012472-83012491 MsG0380016409.01.T01:CDS 45.0%
AGTACCAATGGCTAGTATGG+TGG + Chr3:83010958-83010977 None:intergenic 45.0%
ATATGTCTTGGCGTACGTTG+AGG + Chr3:83011822-83011841 None:intergenic 45.0%
CAACCGGTGAAGGACTAAAA+TGG - Chr3:83013226-83013245 MsG0380016409.01.T01:CDS 45.0%
CGAACACATGACTCAACTCA+AGG - Chr3:83011043-83011062 MsG0380016409.01.T01:CDS 45.0%
GAAGAAGGTCTATGGAAGAG+GGG - Chr3:83013196-83013215 MsG0380016409.01.T01:CDS 45.0%
GAAGAGGGGAAAACAACAAC+CGG - Chr3:83013210-83013229 MsG0380016409.01.T01:CDS 45.0%
GAGAAGAAGGTCTATGGAAG+AGG - Chr3:83013194-83013213 MsG0380016409.01.T01:CDS 45.0%
TACCACCAAGGTTGTTATGC+TGG - Chr3:83012027-83012046 MsG0380016409.01.T01:CDS 45.0%
TATGTCTTGGCGTACGTTGA+GGG + Chr3:83011821-83011840 None:intergenic 45.0%
TATTGAAGGACACTTGCGTG+AGG - Chr3:83012906-83012925 MsG0380016409.01.T01:intron 45.0%
TGCAGTACCAATGGCTAGTA+TGG + Chr3:83010961-83010980 None:intergenic 45.0%
TGGCCCCAATGAAAAACACT+TGG - Chr3:83012146-83012165 MsG0380016409.01.T01:CDS 45.0%
TGGGATGAGAAGAAGGTCTA+TGG - Chr3:83013188-83013207 MsG0380016409.01.T01:CDS 45.0%
TTCCACCAGCATAACAACCT+TGG + Chr3:83012035-83012054 None:intergenic 45.0%
!! ACCCCATTTTAGTCCTTCAC+CGG + Chr3:83013232-83013251 None:intergenic 45.0%
!! GGACAAGCACTTTTTGGTGA+CGG - Chr3:83012180-83012199 MsG0380016409.01.T01:CDS 45.0%
!! GTTGAAGAAGTGCCAAAGCT+AGG - Chr3:83011844-83011863 MsG0380016409.01.T01:intron 45.0%
!! TTGATTTGGGCTGCAATAGG+AGG - Chr3:83011406-83011425 MsG0380016409.01.T01:intron 45.0%
!!! TTGTTTTGGGTAACACACCC+TGG - Chr3:83013039-83013058 MsG0380016409.01.T01:intron 45.0%
!! TATATATATATATATATATG+GGG - Chr3:83012438-83012457 MsG0380016409.01.T01:CDS 5.0%
ATGGTTTCCATGGTCAAGCC+AGG + Chr3:83013273-83013292 None:intergenic 50.0%
CACCAAGGTTGTTATGCTGG+TGG - Chr3:83012030-83012049 MsG0380016409.01.T01:CDS 50.0%
CACCAGCATAACAACCTTGG+TGG + Chr3:83012032-83012051 None:intergenic 50.0%
GACTGGAGTTGCAGTACCAA+TGG + Chr3:83010970-83010989 None:intergenic 50.0%
GGGAAAACAACAACCGGTGA+AGG - Chr3:83013216-83013235 MsG0380016409.01.T01:CDS 50.0%
GGTGCTTCATCTGTGATCGT+TGG - Chr3:83012201-83012220 MsG0380016409.01.T01:CDS 50.0%
GTTGGCGCTATGCAAAGCAA+TGG + Chr3:83013292-83013311 None:intergenic 50.0%
! ATTTGGTCCTGGCTTGACCA+TGG - Chr3:83013263-83013282 MsG0380016409.01.T01:CDS 50.0%
! GGACGTTCAAGTGTTGTGTC+TGG + Chr3:83012234-83012253 None:intergenic 50.0%
!! TTTTGGGTAACACACCCTGG+TGG - Chr3:83013042-83013061 MsG0380016409.01.T01:intron 50.0%
!!! GCTGCTTTTTCGCCTAGCTT+TGG + Chr3:83011859-83011878 None:intergenic 50.0%
ACTTCCGGAGTTGACATGCC+TGG - Chr3:83011943-83011962 MsG0380016409.01.T01:CDS 55.0%
AGAGAGTCCCAAAGAGCTCG+TGG - Chr3:83010927-83010946 MsG0380016409.01.T01:CDS 55.0%
AGCACCAGGCATGTCAACTC+CGG + Chr3:83011950-83011969 None:intergenic 55.0%
CCAATGGCTAGTATGGTGGC+TGG + Chr3:83010954-83010973 None:intergenic 55.0%
CCAGCCACCATACTAGCCAT+TGG - Chr3:83010951-83010970 MsG0380016409.01.T01:CDS 55.0%
GAAGGACACTTGCGTGAGGT+GGG - Chr3:83012910-83012929 MsG0380016409.01.T01:intron 55.0%
GGACAACAAGCTAAGCCGCT+AGG + Chr3:83012356-83012375 None:intergenic 55.0%
TCTTGGCGTACGTTGAGGGA+TGG + Chr3:83011817-83011836 None:intergenic 55.0%
TGAAGGACACTTGCGTGAGG+TGG - Chr3:83012909-83012928 MsG0380016409.01.T01:intron 55.0%
! GCTAAGCCGCTAGGCCTTTT+TGG + Chr3:83012347-83012366 None:intergenic 55.0%
GGCTGGACCACGAGCTCTTT+GGG + Chr3:83010937-83010956 None:intergenic 60.0%
TGGCTGGACCACGAGCTCTT+TGG + Chr3:83010938-83010957 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 83010906 83013329 83010906 ID=MsG0380016409.01;Name=MsG0380016409.01
Chr3 mRNA 83010906 83013329 83010906 ID=MsG0380016409.01.T01;Parent=MsG0380016409.01;Name=MsG0380016409.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.75|1|1|4|0|419
Chr3 exon 83013152 83013329 83013152 ID=MsG0380016409.01.T01:exon:13979;Parent=MsG0380016409.01.T01
Chr3 exon 83012681 83012758 83012681 ID=MsG0380016409.01.T01:exon:13978;Parent=MsG0380016409.01.T01
Chr3 exon 83011932 83012507 83011932 ID=MsG0380016409.01.T01:exon:13977;Parent=MsG0380016409.01.T01
Chr3 exon 83010906 83011333 83010906 ID=MsG0380016409.01.T01:exon:13976;Parent=MsG0380016409.01.T01
Chr3 CDS 83013152 83013329 83013152 ID=MsG0380016409.01.T01:cds;Parent=MsG0380016409.01.T01
Chr3 CDS 83012681 83012758 83012681 ID=MsG0380016409.01.T01:cds;Parent=MsG0380016409.01.T01
Chr3 CDS 83011932 83012507 83011932 ID=MsG0380016409.01.T01:cds;Parent=MsG0380016409.01.T01
Chr3 CDS 83010906 83011333 83010906 ID=MsG0380016409.01.T01:cds;Parent=MsG0380016409.01.T01
Gene Sequence

>MsG0380016409.01.T01

ATGGCATACTTAGAGGGAATAAGAGAGTCCCAAAGAGCTCGTGGTCCAGCCACCATACTAGCCATTGGTACTGCAACTCCAGTCAATTGCATTTACCAATCTGATTTTACTGATTATTACTTTCGAGTTACCAAAAGCGAACACATGACTCAACTCAAGGCCAAACTGAAGCGTATATGTATAAATTTTAACTTTAAATTGATGATAAGAAGATGTGAAACTACTGATGTGACCAATTGTGATGAAGTAAAAGACGGTGAGAAATCAATGATAAAGAAACGTTACATACACCTAACTGAAGAAATCCTGAAAGAACACCCCAACATATCAACTTACGAAGAACCATCCCTCAACGTACGCCAAGACATATTAGTTGAAGAAGTGCCAAAGCTAGGCGAAAAAGCAGCATTAAAAGCCCTAAAAGAATGGGGAAGACCAAAATCAGAGATAACTCATCTCATATTTTGTTCAACTTCCGGAGTTGACATGCCTGGTGCTGATTATCAACTCATTAAACTCTTGAATCTAAATCCATCCACTAAAAGGTTCATGTTATACCACCAAGGTTGTTATGCTGGTGGAACCGTTCTTCGTCTTGCCAAAGATCTAGCTGAGAATAATGTTGGTGCACGAGTCCTTGTTGTGTGTTCTGAAATAACTGTTGTTACTTTTCGTGGCCCCAATGAAAAACACTTGGATTCGTTAGTTGGACAAGCACTTTTTGGTGACGGTGCTTCATCTGTGATCGTTGGATCAAATCCAGACACAACACTTGAACGTCCTTTATTTCATCTTGTTTCGGCTTCAGAAACGATTCTACCAAACTCTGAAGGTGCTATTGAAGGACACTTGCGTGAGGTGGGACTCACTTTTCATTTGAAAGATAATGTTCCAAGTTTGATTGGTGAGAATATTGAGAAGAGTTTAGAAGAAACTTTTCACCCATTGGGAATTACTGATTGGAATTCTTTGTTTTGGGTAACACACCCTGGTGGTCCTGCAATAATTAAGAGGATTGAAGAAACGGTTGGATTGAATTCAGATAAACTAAATGCAACTAAACATGTTTTGAGTGAGTATGGAAACATGTCAAGTGCTTGTGTGATATTTATATTGGATGGGATGAGAAGAAGGTCTATGGAAGAGGGGAAAACAACAACCGGTGAAGGACTAAAATGGGGTGTTTTGTTTGGATTTGGTCCTGGCTTGACCATGGAAACCATTGCTTTGCATAGCGCCAACATAGACCATGTTCACTAA
Protein sequence

>MsG0380016409.01.T01

MAYLEGIRESQRARGPATILAIGTATPVNCIYQSDFTDYYFRVTKSEHMTQLKAKLKRICINFNFKLMIRRCETTDVTNCDEVKDGEKSMIKKRYIHLTEEILKEHPNISTYEEPSLNVRQDILVEEVPKLGEKAALKALKEWGRPKSEITHLIFCSTSGVDMPGADYQLIKLLNLNPSTKRFMLYHQGCYAGGTVLRLAKDLAENNVGARVLVVCSEITVVTFRGPNEKHLDSLVGQALFGDGASSVIVGSNPDTTLERPLFHLVSASETILPNSEGAIEGHLREVGLTFHLKDNVPSLIGENIEKSLEETFHPLGITDWNSLFWVTHPGGPAIIKRIEETVGLNSDKLNATKHVLSEYGNMSSACVIFILDGMRRRSMEEGKTTTGEGLKWGVLFGFGPGLTMETIALHSANIDHVH*