AlfalfaGEDB | MsG0680031009.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031009.01

KEGG: -
GO: GO:0016491 GO:0055114
PFAM: PF03171 PF14226

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031009.01.T01	XP_013451106.2	95.575	339	15	0	1	339	1	339	0	679

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031009.01.T01	P24397	44.575	341	167	9	8	332	4	338	4.43E-86	266

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031009.01.T01	A0A396HAK2	95.575	339	15	0	1	339	1	339	0.0	679

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0680031009.01	0.825969	3.507644e-54	3.246031e-51
MsG0080048036.01	MsG0680031009.01	0.879173	1.546318e-69	8.300797e-66
MsG0080048059.01	MsG0680031009.01	-0.806593	7.628275e-50	4.156717e-47
MsG0080048134.01	MsG0680031009.01	0.808356	3.224458e-50	1.839824e-47
MsG0080048301.01	MsG0680031009.01	0.863717	2.039582e-64	6.245079e-61
MsG0080048347.01	MsG0680031009.01	0.867495	1.312113e-65	4.590372e-62
MsG0080048349.01	MsG0680031009.01	0.813236	2.834357e-51	1.840694e-48
MsG0080048352.01	MsG0680031009.01	0.861565	9.383207e-64	2.666489e-60
MsG0080048486.01	MsG0680031009.01	0.812259	4.639718e-51	2.935895e-48
MsG0080048487.01	MsG0680031009.01	0.814534	1.467037e-51	9.869544e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031009.01.T01	MTR_6g015950	95.536	336	15	0	4	339	1	336	0.0	672
MsG0680031009.01.T01	MTR_7g016090	59.639	332	133	1	3	334	2	332	1.87e-148	422
MsG0680031009.01.T01	MTR_7g016090	59.819	331	132	1	4	334	1	330	3.14e-148	421
MsG0680031009.01.T01	MTR_7g016080	56.083	337	137	3	4	338	1	328	1.60e-139	399
MsG0680031009.01.T01	MTR_1g070135	46.608	339	175	4	4	339	1	336	4.48e-109	322
MsG0680031009.01.T01	MTR_1g070080	47.774	337	169	5	6	338	2	335	3.30e-107	317
MsG0680031009.01.T01	MTR_1g070085	46.243	346	163	6	6	339	2	336	1.97e-104	310
MsG0680031009.01.T01	MTR_1g070085	46.243	346	163	6	6	339	2	336	1.97e-104	310
MsG0680031009.01.T01	MTR_1g070120	44.248	339	183	4	4	339	1	336	5.26e-103	306
MsG0680031009.01.T01	MTR_1g070135	47.148	263	133	4	4	263	1	260	9.46e-82	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031009.01.T01	AT5G24530	38.235	340	203	4	4	339	1	337	1.54e-79	246
MsG0680031009.01.T01	AT4G10500	37.615	327	195	6	19	339	20	343	1.22e-70	224
MsG0680031009.01.T01	AT4G10490	35.588	340	207	7	8	339	7	342	1.36e-65	211
MsG0680031009.01.T01	AT5G05600	37.389	337	191	7	17	339	36	366	1.81e-63	206
MsG0680031009.01.T01	AT2G38240	37.888	322	189	6	18	331	22	340	3.69e-63	204
MsG0680031009.01.T01	AT1G06620	36.858	331	179	10	17	330	36	353	1.76e-59	196
MsG0680031009.01.T01	AT3G55970	35.484	341	200	8	9	332	14	351	2.52e-58	192
MsG0680031009.01.T01	AT4G16330	37.134	307	178	7	39	339	64	361	5.91e-57	189
MsG0680031009.01.T01	AT5G08640	35.380	342	202	8	1	331	1	334	8.70e-57	187
MsG0680031009.01.T01	AT5G08640	35.380	342	202	8	1	331	1	334	8.70e-57	187

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Find 94 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCATGAATTCTCCAG+AGG	0.678023	6:+12816885	None:intergenic
AAACTTGGTTCAGGGCAAGG+AGG	0.682307	6:+12814603	None:intergenic
AAATAGATGCTGTTCAATAT+TGG	0.342734	6:-12816936	MsG0680031009.01.T01:CDS
AACAAAGGCTTATCTCAAGT+TGG	0.528594	6:-12818082	MsG0680031009.01.T01:CDS
AACTCCATGAATTCTCCAGA+GGG	0.617098	6:+12816886	None:intergenic
AAGGGTATTGTCTTACTTGA+AGG	0.414793	6:+12817987	None:intergenic
AAGTGATGAGCTAGTACTAC+TGG	0.454189	6:+12814627	None:intergenic
AAGTTCTTAAGGATGATGAA+TGG	0.475543	6:-12814503	MsG0680031009.01.T01:CDS
AATATTGAACAGCATCTATT+TGG	0.241718	6:+12816938	None:intergenic
AATGACATGGATTTATATAT+TGG	0.234856	6:+12813953	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAATATAGGTCTGTT+TGG	+	Chr6:12816047-12816066	None:intergenic	30.0%
AAGTTCTTAAGGATGATGAA+TGG	-	Chr6:12817352-12817371	MsG0680031009.01.T01:intron	30.0%
ACACAAGAACTGAACAAATT+GGG	-	Chr6:12817129-12817148	MsG0680031009.01.T01:intron	30.0%
ACTATGGAAAACTTTAGTCT+AGG	+	Chr6:12816583-12816602	None:intergenic	30.0%
AGTAGAATAGTGATGATTGT+AGG	+	Chr6:12817306-12817325	None:intergenic	30.0%
ATCATCGCATAAGTTATTGA+GGG	-	Chr6:12815269-12815288	MsG0680031009.01.T01:intron	30.0%
CATTATGTCTTAACTCAGTT+GGG	+	Chr6:12814410-12814429	None:intergenic	30.0%
CGTAAGAAGTTCTATGATAA+GGG	-	Chr6:12817935-12817954	MsG0680031009.01.T01:CDS	30.0%
CTATGGAAAACTTTAGTCTA+GGG	+	Chr6:12816582-12816601	None:intergenic	30.0%
GAATTGGAATTAAGAACTGA+TGG	+	Chr6:12816302-12816321	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	12813760	12818117	12813760	ID=MsG0680031009.01;Name=MsG0680031009.01
Chr6	mRNA	12813760	12818117	12813760	ID=MsG0680031009.01.T01;Parent=MsG0680031009.01;Name=MsG0680031009.01.T01;_AED=0.36;_eAED=0.36;_QI=0\|1\|0.75\|1\|1\|1\|4\|129\|339
Chr6	exon	12813760	12814122	12813760	ID=MsG0680031009.01.T01:exon:9136;Parent=MsG0680031009.01.T01
Chr6	exon	12814446	12814767	12814446	ID=MsG0680031009.01.T01:exon:9135;Parent=MsG0680031009.01.T01
Chr6	exon	12816859	12817112	12816859	ID=MsG0680031009.01.T01:exon:9134;Parent=MsG0680031009.01.T01
Chr6	exon	12817908	12818117	12817908	ID=MsG0680031009.01.T01:exon:9133;Parent=MsG0680031009.01.T01
Chr6	CDS	12817908	12818117	12817908	ID=MsG0680031009.01.T01:cds;Parent=MsG0680031009.01.T01
Chr6	CDS	12816859	12817112	12816859	ID=MsG0680031009.01.T01:cds;Parent=MsG0680031009.01.T01
Chr6	CDS	12814446	12814767	12814446	ID=MsG0680031009.01.T01:cds;Parent=MsG0680031009.01.T01
Chr6	CDS	12813889	12814122	12813889	ID=MsG0680031009.01.T01:cds;Parent=MsG0680031009.01.T01
Chr6	three_prime_UTR	12813760	12813888	12813760	ID=MsG0680031009.01.T01:three_prime_utr;Parent=MsG0680031009.01.T01

Gene Sequence

>MsG0680031009.01.T01

ATGGAAACAATGGAACAAAGGCTTATCTCAAGTTGGTCTAATGTTAATTCCTCAGTTCCACCTTCCTTTGTGCAACCACTAGAGTGTAGACCTGGTAAGGTCACAACCCCTTCAAGTAAGACAATACCCTTGATTGATCTTGGAGGACATGATCATGCTCATACCATAATGCAAATTTTGAAAGCTTCTGAAGAATATGGTTTTTTTCAGGTGATCAACCATGGAATTTCCAAGGATTTAATGGATGAAGCCTTCAATATTTTCAAAGAGTTCCATGCCATGACTCCAAAGGAAAAGATAAGTGAATGCTCTAAAGATCCAAATGGAATTAATTGTAAGATATATGCAAGTAGTGAGAATTACCAAATAGATGCTGTTCAATATTGGAAGGACACATTGACACACCCTTGTCCTCCCTCTGGAGAATTCATGGAGTTTTGGCCTCAGAAACCACCTAAATACCGTGAGGTTGTTGGTAAATATACACAAGAACTGAACAAATTGGGACATGAAATTTTGGAGATGCTTTGTGAAGGGTTAGGGCTTAAACCAGAATATTTCATTGGGGAACTTAGTGAAAATCCAGTAGTACTAGCTCATCACTTTCCTCCTTGCCCTGAACCAAGTTTAACTTTGGGTCTAGCCAAACATAGAGACCCTACAATCATCACTATTCTACTTCAAGATCAAGAGGTACATGGCCTTCAAGTTCTTAAGGATGATGAATGGATTCCAGTTGAACCTATTCCCAATGCTTTTGTTGTTAACATTGGTTTAATCTTGCAGATAATCACCAATGGAAGGCTTGTTGGTGCTGAACATAGAGTTGTGACAAATTCAAAAAGTGTACGTACATCTGTTGCATATTTCATCTATCCATCATTTTCAAGAATGATAGAACCTGCAGAAGAATTGGTAGATGGAAACAATCCTCCAATATATAAATCCATGTCATTTGGAGAATTTCGTAAGAAGTTCTATGATAAGGGTCCTAAGATTGAACAGGTGTTGCAATCCTAA

Protein sequence

>MsG0680031009.01.T01

METMEQRLISSWSNVNSSVPPSFVQPLECRPGKVTTPSSKTIPLIDLGGHDHAHTIMQILKASEEYGFFQVINHGISKDLMDEAFNIFKEFHAMTPKEKISECSKDPNGINCKIYASSENYQIDAVQYWKDTLTHPCPPSGEFMEFWPQKPPKYREVVGKYTQELNKLGHEILEMLCEGLGLKPEYFIGELSENPVVLAHHFPPCPEPSLTLGLAKHRDPTIITILLQDQEVHGLQVLKDDEWIPVEPIPNAFVVNIGLILQIITNGRLVGAEHRVVTNSKSVRTSVAYFIYPSFSRMIEPAEELVDGNNPPIYKSMSFGEFRKKFYDKGPKIEQVLQS*