AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022638.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022638.01.T01 MTR_4g093830 88.122 362 32 3 1 353 1 360 0.0 619
MsG0480022638.01.T01 MTR_2g009310 44.836 397 153 16 1 347 3 383 1.39e-82 256
MsG0480022638.01.T01 MTR_5g064890 44.843 223 111 6 18 233 21 238 3.28e-49 169
MsG0480022638.01.T01 MTR_8g089880 38.298 235 118 3 41 248 13 247 2.62e-46 159
MsG0480022638.01.T01 MTR_5g030010 47.857 140 68 2 60 199 59 193 1.01e-36 136
MsG0480022638.01.T01 MTR_1g070140 34.199 231 117 11 39 255 24 233 1.34e-24 102
MsG0480022638.01.T01 MTR_8g066780 34.921 189 95 6 50 224 49 223 3.02e-24 102
MsG0480022638.01.T01 MTR_1g043410 31.858 226 118 9 45 249 20 230 2.69e-23 99.0
MsG0480022638.01.T01 MTR_5g034790 35.897 156 99 1 41 196 30 184 4.47e-23 99.0
MsG0480022638.01.T01 MTR_2g436100 42.373 118 62 3 126 243 91 202 5.28e-22 94.7
MsG0480022638.01.T01 MTR_4g120270 30.890 191 120 4 76 266 38 216 8.68e-22 94.0
MsG0480022638.01.T01 MTR_1g074190 27.609 297 139 11 59 309 53 319 1.68e-21 94.4
MsG0480022638.01.T01 MTR_4g129420 50.602 83 40 1 121 202 110 192 1.76e-21 95.9
MsG0480022638.01.T01 MTR_4g106680 31.507 146 92 2 55 199 39 177 2.02e-21 93.6
MsG0480022638.01.T01 MTR_8g063660 36.429 140 84 1 60 199 5 139 4.64e-21 92.8
MsG0480022638.01.T01 MTR_3g464780 39.437 142 81 2 118 254 92 233 7.45e-21 90.9
MsG0480022638.01.T01 MTR_8g023400 34.637 179 99 5 66 237 30 197 1.12e-20 91.7
MsG0480022638.01.T01 MTR_6g007737 45.349 86 47 0 121 206 126 211 1.62e-20 92.0
MsG0480022638.01.T01 MTR_3g110190 52.174 69 33 0 128 196 66 134 7.90e-20 89.7
MsG0480022638.01.T01 MTR_3g100400 46.835 79 40 1 125 203 127 203 1.15e-19 89.7
MsG0480022638.01.T01 MTR_5g026720 45.349 86 42 2 123 203 57 142 1.60e-19 84.7
MsG0480022638.01.T01 MTR_5g066250 28.261 184 119 3 125 308 131 301 2.61e-19 89.0
MsG0480022638.01.T01 MTR_5g064980 45.833 96 46 3 128 220 108 200 2.98e-19 88.6
MsG0480022638.01.T01 MTR_7g096690 29.577 213 122 7 59 257 13 211 3.78e-19 87.4
MsG0480022638.01.T01 MTR_6g087150 44.872 78 43 0 125 202 90 167 1.35e-18 86.3
MsG0480022638.01.T01 MTR_3g091620 34.532 139 81 3 113 245 90 224 1.80e-18 85.9
MsG0480022638.01.T01 MTR_7g113800 33.540 161 82 3 46 203 31 169 3.10e-18 85.1
MsG0480022638.01.T01 MTR_1g082550 43.878 98 52 2 128 222 98 195 3.20e-18 85.1
MsG0480022638.01.T01 MTR_7g076250 29.381 194 117 9 61 251 12 188 3.57e-18 82.0
MsG0480022638.01.T01 MTR_3g094000 40.909 88 50 1 118 203 81 168 3.73e-18 81.6
MsG0480022638.01.T01 MTR_2g096350 39.175 97 48 2 105 199 93 180 5.94e-18 82.0
MsG0480022638.01.T01 MTR_6g055030 31.613 155 85 4 63 214 50 186 1.19e-17 82.8
MsG0480022638.01.T01 MTR_8g073120 37.895 95 44 2 122 201 51 145 1.46e-17 80.5
MsG0480022638.01.T01 MTR_4g063070 41.667 84 47 1 123 204 303 386 1.93e-17 83.2
MsG0480022638.01.T01 MTR_7g073200 45.333 75 41 0 128 202 81 155 2.26e-17 79.3
MsG0480022638.01.T01 MTR_8g071815 55.000 60 26 1 154 213 90 148 4.98e-17 78.6
MsG0480022638.01.T01 MTR_3g099650 44.304 79 41 1 128 203 107 185 6.03e-17 81.6
MsG0480022638.01.T01 MTR_3g078470 42.857 77 42 1 123 197 71 147 1.78e-16 77.8
MsG0480022638.01.T01 MTR_3g078450 38.462 91 54 1 123 211 71 161 4.05e-16 76.6
MsG0480022638.01.T01 MTR_5g026730 43.182 88 41 3 126 204 57 144 4.10e-16 75.9
MsG0480022638.01.T01 MTR_8g028465 38.679 106 54 2 105 210 76 170 5.28e-16 76.3
MsG0480022638.01.T01 MTR_8g066740 31.214 173 84 7 41 203 8 155 5.44e-16 77.8
MsG0480022638.01.T01 MTR_4g056590 41.892 74 40 1 128 201 100 170 5.84e-16 75.9
MsG0480022638.01.T01 MTR_5g092790 38.235 102 51 2 100 199 139 230 6.33e-16 76.6
MsG0480022638.01.T01 MTR_8g092990 43.373 83 37 1 152 224 139 221 6.37e-16 76.6
MsG0480022638.01.T01 MTR_5g064990 32.515 163 83 6 44 200 48 189 7.19e-16 78.6
MsG0480022638.01.T01 MTR_8g092930 36.111 108 58 2 128 224 112 219 9.02e-16 75.9
MsG0480022638.01.T01 MTR_7g116210 45.714 70 37 1 128 197 10 78 9.42e-16 73.2
MsG0480022638.01.T01 MTR_2g055790 39.726 73 41 1 128 200 77 146 9.65e-16 75.1
MsG0480022638.01.T01 MTR_7g116220 44.872 78 36 2 128 200 70 145 9.76e-16 74.7
MsG0480022638.01.T01 MTR_7g117540 47.945 73 33 2 129 199 77 146 1.42e-15 76.6
MsG0480022638.01.T01 MTR_3g116000 41.892 74 42 1 128 201 79 151 1.55e-15 74.7
MsG0480022638.01.T01 MTR_1g100737 50.000 60 29 1 138 197 108 166 1.58e-15 74.7
MsG0480022638.01.T01 MTR_2g041200 50.704 71 29 2 135 199 84 154 1.78e-15 73.9
MsG0480022638.01.T01 MTR_8g092970 40.964 83 39 1 152 224 129 211 2.13e-15 74.7
MsG0480022638.01.T01 MTR_2g090950 36.735 98 56 1 128 219 91 188 2.45e-15 75.1
MsG0480022638.01.T01 MTR_8g009190 44.444 72 37 1 132 200 80 151 2.98e-15 75.9
MsG0480022638.01.T01 MTR_7g116200 45.714 70 37 1 128 197 68 136 3.04e-15 73.2
MsG0480022638.01.T01 MTR_3g086700 56.000 50 22 0 153 202 74 123 3.40e-15 73.6
MsG0480022638.01.T01 MTR_3g095560 44.595 74 40 1 128 200 109 182 3.77e-15 74.3
MsG0480022638.01.T01 MTR_8g093010 33.645 107 61 2 128 224 107 213 4.54e-15 73.9
MsG0480022638.01.T01 MTR_7g079280 36.471 85 52 1 128 210 80 164 4.82e-15 72.8
MsG0480022638.01.T01 MTR_7g079290 31.111 135 74 3 80 210 92 211 4.83e-15 73.6
MsG0480022638.01.T01 MTR_8g092960 44.286 70 38 1 128 196 103 172 6.27e-15 73.6
MsG0480022638.01.T01 MTR_5g071930 37.302 126 58 4 79 200 27 135 6.36e-15 72.8
MsG0480022638.01.T01 MTR_7g116180 47.945 73 35 2 128 197 67 139 6.48e-15 72.4
MsG0480022638.01.T01 MTR_6g055030 52.542 59 28 0 156 214 97 155 7.01e-15 74.3
MsG0480022638.01.T01 MTR_5g024730 34.066 91 58 1 113 201 62 152 7.17e-15 73.2
MsG0480022638.01.T01 MTR_8g092840 44.286 70 38 1 128 196 113 182 7.55e-15 73.6
MsG0480022638.01.T01 MTR_3g086730 56.000 50 22 0 153 202 74 123 7.88e-15 73.6
MsG0480022638.01.T01 MTR_8g092985 44.286 70 38 1 128 196 111 180 9.78e-15 72.8
MsG0480022638.01.T01 MTR_2g044570 52.632 57 26 1 143 199 73 128 1.26e-14 73.9
MsG0480022638.01.T01 MTR_1g492830 28.947 152 89 3 61 211 12 145 1.45e-14 72.4
MsG0480022638.01.T01 MTR_2g035800 39.773 88 49 1 116 199 60 147 1.74e-14 70.9
MsG0480022638.01.T01 MTR_1g070425 47.945 73 35 2 128 197 68 140 1.97e-14 71.2
MsG0480022638.01.T01 MTR_7g108855 41.096 73 41 1 129 199 67 139 5.10e-14 70.5
MsG0480022638.01.T01 MTR_8g019710 50.980 51 25 0 149 199 49 99 7.54e-14 68.6
MsG0480022638.01.T01 MTR_3g114500 45.455 66 34 1 134 197 49 114 9.81e-14 67.8
MsG0480022638.01.T01 MTR_5g082940 34.524 84 52 2 128 209 75 157 1.15e-13 68.6
MsG0480022638.01.T01 MTR_4g022410 29.747 158 87 4 44 200 25 159 1.19e-13 69.3
MsG0480022638.01.T01 MTR_4g030070 36.986 73 45 1 128 200 85 156 1.41e-13 69.7
MsG0480022638.01.T01 MTR_5g092750 50.877 57 28 0 144 200 175 231 2.16e-13 69.3
MsG0480022638.01.T01 MTR_5g022920 60.465 43 17 0 154 196 189 231 2.45e-13 69.3
MsG0480022638.01.T01 MTR_3g078520 42.029 69 37 1 129 197 81 146 2.54e-13 67.8
MsG0480022638.01.T01 MTR_1g090480 29.730 148 76 6 77 213 29 159 2.64e-13 67.8
MsG0480022638.01.T01 MTR_2g090905 47.458 59 25 1 153 211 70 122 3.08e-13 66.2
MsG0480022638.01.T01 MTR_1g026070 40.580 69 31 1 151 219 68 126 3.57e-13 66.2
MsG0480022638.01.T01 MTR_5g076990 28.488 172 90 5 41 203 8 155 4.75e-13 69.3
MsG0480022638.01.T01 MTR_1g056350 45.614 57 31 0 154 210 103 159 6.19e-13 66.6
MsG0480022638.01.T01 MTR_8g032690 52.174 46 22 0 154 199 19 64 9.78e-13 64.3
MsG0480022638.01.T01 MTR_8g074900 58.140 43 18 0 154 196 180 222 1.95e-12 66.2
MsG0480022638.01.T01 MTR_3g071300 33.750 80 49 1 128 203 76 155 2.57e-12 65.1
MsG0480022638.01.T01 MTR_8g099495 38.554 83 47 2 116 196 309 389 5.99e-12 66.6
MsG0480022638.01.T01 MTR_4g094725 58.140 43 18 0 154 196 106 148 6.85e-12 63.2
MsG0480022638.01.T01 MTR_8g099515 44.286 70 32 2 134 196 310 379 1.09e-11 65.9
MsG0480022638.01.T01 MTR_5g009190 40.506 79 43 2 120 196 260 336 1.15e-11 65.5
MsG0480022638.01.T01 MTR_5g009200 40.506 79 43 2 120 196 316 392 1.28e-11 65.9
MsG0480022638.01.T01 MTR_7g059360 45.000 60 33 0 140 199 144 203 1.44e-11 63.9
MsG0480022638.01.T01 MTR_5g009210 40.506 79 43 2 120 196 281 357 1.65e-11 65.1
MsG0480022638.01.T01 MTR_3g087900 48.438 64 29 3 140 202 57 117 1.72e-11 62.4
MsG0480022638.01.T01 MTR_8g027745 36.905 84 49 2 128 208 286 368 2.22e-11 64.7
MsG0480022638.01.T01 MTR_3g078540 35.802 81 43 2 128 202 50 127 3.85e-11 60.8
MsG0480022638.01.T01 MTR_3g012550 31.395 86 57 1 128 211 80 165 5.34e-11 61.2
MsG0480022638.01.T01 MTR_1g090460 47.059 51 27 0 154 204 95 145 5.77e-11 60.8
MsG0480022638.01.T01 MTR_3g091200 34.343 99 59 3 103 197 278 374 5.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022638.01.T01 AT1G72220 39.916 238 119 4 47 284 72 285 6.19e-47 164
MsG0480022638.01.T01 AT4G33565 41.500 200 102 4 116 312 179 366 7.50e-40 144
MsG0480022638.01.T01 AT5G10380 69.880 83 25 0 119 201 100 182 3.03e-37 136
MsG0480022638.01.T01 AT3G03550 40.426 188 94 4 32 201 19 206 7.34e-35 131
MsG0480022638.01.T01 AT5G17600 77.143 70 16 0 128 197 116 185 4.93e-34 129
MsG0480022638.01.T01 AT4G17905 29.893 281 145 7 32 270 18 288 1.83e-27 110
MsG0480022638.01.T01 AT4G17905 29.893 281 145 7 32 270 44 314 2.99e-27 110
MsG0480022638.01.T01 AT1G23980 32.955 176 100 3 39 199 17 189 2.71e-23 99.8
MsG0480022638.01.T01 AT2G20030 29.577 213 123 5 37 241 19 212 3.32e-23 99.8
MsG0480022638.01.T01 AT5G43420 31.818 220 101 9 56 247 46 244 7.29e-23 98.6
MsG0480022638.01.T01 AT1G72200 35.961 203 109 7 67 266 63 247 2.02e-21 94.7
MsG0480022638.01.T01 AT1G04360 31.111 225 107 9 56 262 53 247 1.57e-20 92.0
MsG0480022638.01.T01 AT2G18650 50.617 81 39 1 121 200 92 172 2.36e-20 92.0
MsG0480022638.01.T01 AT4G30400 51.948 77 36 1 121 196 100 176 4.36e-20 91.7
MsG0480022638.01.T01 AT4G28890 42.157 102 59 0 125 226 94 195 1.02e-19 90.1
MsG0480022638.01.T01 AT5G57750 55.072 69 30 1 129 196 96 164 2.08e-19 85.9
MsG0480022638.01.T01 AT5G05810 48.101 79 39 1 125 203 117 193 2.54e-19 89.0
MsG0480022638.01.T01 AT4G40070 29.500 200 102 8 40 225 30 204 5.66e-19 87.0
MsG0480022638.01.T01 AT4G10150 30.811 185 111 4 68 249 31 201 6.42e-19 85.1
MsG0480022638.01.T01 AT2G47560 49.351 77 37 1 125 199 77 153 7.45e-19 84.7
MsG0480022638.01.T01 AT5G01880 38.144 97 53 1 104 200 62 151 1.69e-18 82.0
MsG0480022638.01.T01 AT4G15975 31.783 129 82 3 128 256 51 173 2.50e-18 83.6
MsG0480022638.01.T01 AT1G22500 32.370 173 93 6 51 219 32 184 2.51e-18 85.9
MsG0480022638.01.T01 AT3G18930 33.333 150 75 4 128 252 120 269 4.11e-18 85.5
MsG0480022638.01.T01 AT3G18930 33.333 150 75 4 128 252 120 269 4.11e-18 85.5
MsG0480022638.01.T01 AT3G18930 33.333 150 75 4 128 252 120 269 4.11e-18 85.5
MsG0480022638.01.T01 AT3G62690 43.333 90 46 1 129 213 88 177 8.83e-18 82.4
MsG0480022638.01.T01 AT3G48030 48.052 77 39 1 121 196 95 171 1.01e-17 82.4
MsG0480022638.01.T01 AT3G05200 44.318 88 46 2 128 212 99 186 1.17e-17 84.0
MsG0480022638.01.T01 AT1G35330 45.570 79 40 1 128 203 100 178 1.50e-17 82.8
MsG0480022638.01.T01 AT3G48030 48.052 77 39 1 121 196 173 249 2.06e-17 82.8
MsG0480022638.01.T01 AT5G40250 29.032 248 118 9 121 321 100 336 2.98e-17 82.4
MsG0480022638.01.T01 AT2G35910 41.667 84 49 0 127 210 120 203 4.38e-17 79.7
MsG0480022638.01.T01 AT4G10160 33.108 148 80 5 128 265 72 210 5.02e-17 79.7
MsG0480022638.01.T01 AT3G16720 36.054 147 79 6 128 266 94 233 6.14e-17 80.9
MsG0480022638.01.T01 AT5G66070 39.806 103 56 2 94 196 122 218 1.48e-16 78.2
MsG0480022638.01.T01 AT5G66070 39.806 103 56 2 94 196 122 218 1.48e-16 78.2
MsG0480022638.01.T01 AT3G10910 44.156 77 39 2 128 202 88 162 1.51e-16 77.0
MsG0480022638.01.T01 AT4G09120 43.038 79 42 1 128 203 94 172 1.64e-16 80.1
MsG0480022638.01.T01 AT2G27940 40.244 82 46 2 116 197 105 183 1.72e-16 78.2
MsG0480022638.01.T01 AT1G53820 42.105 76 43 1 124 199 91 165 1.85e-16 79.3
MsG0480022638.01.T01 AT1G49210 45.946 74 39 1 128 200 108 181 2.37e-16 77.8
MsG0480022638.01.T01 AT5G27420 40.860 93 47 3 128 217 95 182 4.75e-16 79.0
MsG0480022638.01.T01 AT3G60220 37.719 114 57 4 130 239 90 193 6.37e-16 78.2
MsG0480022638.01.T01 AT3G18773 40.860 93 47 2 116 200 84 176 7.86e-16 76.3
MsG0480022638.01.T01 AT5G05280 43.836 73 40 1 128 200 88 159 8.51e-16 75.1
MsG0480022638.01.T01 AT4G09110 40.506 79 44 1 128 203 94 172 1.05e-15 77.0
MsG0480022638.01.T01 AT2G34990 41.772 79 43 1 128 203 89 167 1.10e-15 77.4
MsG0480022638.01.T01 AT2G34990 41.772 79 43 1 128 203 67 145 1.13e-15 77.0
MsG0480022638.01.T01 AT4G17920 31.875 160 84 6 44 196 11 152 1.68e-15 76.3
MsG0480022638.01.T01 AT1G49200 38.043 92 50 2 116 200 91 182 1.71e-15 75.1
MsG0480022638.01.T01 AT1G28040 34.868 152 77 6 49 196 162 295 2.01e-15 76.3
MsG0480022638.01.T01 AT1G72310 42.466 73 41 1 128 200 102 173 2.51e-15 76.3
MsG0480022638.01.T01 AT2G35000 32.143 140 82 4 66 202 54 183 3.01e-15 76.6
MsG0480022638.01.T01 AT1G49220 47.887 71 34 2 128 196 108 177 4.88e-15 74.3
MsG0480022638.01.T01 AT2G17730 33.333 135 77 4 74 199 111 241 8.96e-15 73.6
MsG0480022638.01.T01 AT4G35840 38.318 107 57 3 94 196 132 233 9.06e-15 73.6
MsG0480022638.01.T01 AT1G76410 41.026 78 39 2 128 201 77 151 9.41e-15 72.4
MsG0480022638.01.T01 AT4G09100 42.105 76 41 1 128 200 56 131 9.85e-15 70.9
MsG0480022638.01.T01 AT1G20823 29.814 161 92 6 45 201 15 158 1.08e-14 72.4
MsG0480022638.01.T01 AT1G33480 39.726 73 43 1 128 200 75 146 1.33e-14 73.2
MsG0480022638.01.T01 AT2G46493 37.647 85 51 1 114 196 96 180 2.44e-14 70.9
MsG0480022638.01.T01 AT5G66070 62.791 43 16 0 154 196 200 242 2.52e-14 72.4
MsG0480022638.01.T01 AT2G46160 30.216 139 74 3 90 211 63 195 3.30e-14 71.2
MsG0480022638.01.T01 AT2G46160 30.216 139 74 3 90 211 63 195 3.30e-14 71.2
MsG0480022638.01.T01 AT2G25410 41.379 87 48 1 114 197 284 370 3.41e-14 73.6
MsG0480022638.01.T01 AT2G46494 29.861 144 82 3 55 196 232 358 6.12e-14 72.4
MsG0480022638.01.T01 AT2G37580 38.824 85 51 1 118 201 105 189 6.72e-14 70.9
MsG0480022638.01.T01 AT3G19140 37.931 87 51 2 112 196 36 121 7.52e-14 68.6
MsG0480022638.01.T01 AT2G35420 28.221 163 95 4 65 222 24 169 7.58e-14 71.2
MsG0480022638.01.T01 AT2G42360 28.313 166 94 6 47 211 20 161 1.03e-13 70.5
MsG0480022638.01.T01 AT2G42350 43.662 71 37 2 128 197 75 143 1.05e-13 70.1
MsG0480022638.01.T01 AT3G61550 35.789 95 50 2 128 211 99 193 1.33e-13 69.7
MsG0480022638.01.T01 AT4G09130 34.862 109 61 4 109 210 74 179 2.06e-13 70.9
MsG0480022638.01.T01 AT5G46650 29.091 220 135 8 39 254 10 212 3.27e-13 69.7
MsG0480022638.01.T01 AT1G49230 38.750 80 47 2 118 196 95 173 5.02e-13 68.2
MsG0480022638.01.T01 AT1G32361 37.363 91 46 3 128 210 130 217 5.02e-13 69.7
MsG0480022638.01.T01 AT2G17450 28.161 174 93 7 36 205 6 151 8.73e-13 66.6
MsG0480022638.01.T01 AT2G46495 42.105 76 41 1 124 196 259 334 9.18e-13 68.9
MsG0480022638.01.T01 AT2G46495 42.105 76 41 1 124 196 287 362 1.05e-12 68.9
MsG0480022638.01.T01 AT5G06490 46.552 58 27 1 154 211 129 182 1.26e-12 66.6
MsG0480022638.01.T01 AT4G35480 53.333 45 21 0 152 196 111 155 2.24e-12 65.9
MsG0480022638.01.T01 AT5G42200 27.338 139 77 2 65 197 27 147 2.82e-12 64.7
MsG0480022638.01.T01 AT5G41400 38.667 75 41 3 137 206 85 159 4.58e-12 64.3
MsG0480022638.01.T01 AT5G07040 38.028 71 42 1 128 196 66 136 9.03e-12 63.2
MsG0480022638.01.T01 AT5G53110 40.845 71 40 1 128 196 302 372 1.33e-11 65.5
MsG0480022638.01.T01 AT5G47610 41.935 62 36 0 152 213 105 166 1.57e-11 62.8
MsG0480022638.01.T01 AT3G14320 37.681 69 42 1 128 196 63 130 1.71e-11 63.2
MsG0480022638.01.T01 AT5G58580 33.628 113 71 3 128 236 111 223 1.83e-11 64.7
MsG0480022638.01.T01 AT1G74410 47.826 46 24 0 154 199 176 221 4.24e-11 62.4
MsG0480022638.01.T01 AT4G24015 44.776 67 36 1 135 201 87 152 7.87e-11 60.8
MsG0480022638.01.T01 AT5G36001 37.662 77 45 1 120 196 233 306 9.42e-11 62.8

Find 76 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGTTGTTGACCCTTTA+AGG 0.066857 4:-74943278 MsG0480022638.01.T01:CDS
TCAAAGAAGGTTGGTGAAAA+TGG 0.155387 4:-74942958 MsG0480022638.01.T01:CDS
CCCTTTAAGGATTCCATCTA+TGG 0.191623 4:-74943265 MsG0480022638.01.T01:CDS
GGGGAAGAGGTTGAGGAAAA+TGG 0.219006 4:-74943153 MsG0480022638.01.T01:CDS
TCCATAGATGGAATCCTTAA+AGG 0.244407 4:+74943264 None:intergenic
AAGTTCTCAGATTGAAGTTT+TGG 0.282980 4:-74943223 MsG0480022638.01.T01:CDS
GGGAGCAGGGGAAGAGGTTG+AGG 0.308353 4:-74943160 MsG0480022638.01.T01:CDS
AATCTCAAAGGAATTCTAAT+AGG 0.326644 4:-74943014 MsG0480022638.01.T01:CDS
TCAAGAGAAACTGATCTTCT+TGG 0.328689 4:+74943090 None:intergenic
TGGTGGTGGTGGAGGGTTGT+AGG 0.328876 4:+74943752 None:intergenic
GGAAATGAAGATAGTGTAAA+TGG 0.346588 4:-74943189 MsG0480022638.01.T01:CDS
CAAAGAAGGTTGGTGAAAAT+GGG 0.354182 4:-74942957 MsG0480022638.01.T01:CDS
AAAAGTGAAGGTTTGATTGA+TGG 0.355415 4:-74943441 MsG0480022638.01.T01:CDS
GGTTGGTGAAAATGGGAATA+TGG 0.357666 4:-74942950 MsG0480022638.01.T01:CDS
AGAAGAGGGAGCAGGGGAAG+AGG 0.361622 4:-74943166 MsG0480022638.01.T01:CDS
TCGGGAGATGGTGGTGGTGG+AGG 0.362711 4:+74943744 None:intergenic
CTTAAAGGGTCAACAACAAT+AGG 0.379511 4:+74943279 None:intergenic
AGAAGATGAGAGTTCAGCTT+TGG 0.389162 4:-74943130 MsG0480022638.01.T01:CDS
GTGCTCCTTGTTCAATGAAT+AGG 0.390573 4:-74942915 MsG0480022638.01.T01:CDS
ATTTACCTTGTATTGATACT+TGG 0.395348 4:-74943338 MsG0480022638.01.T01:CDS
TGAACAAATTGTTTCAAAGA+AGG 0.404773 4:-74942971 MsG0480022638.01.T01:CDS
GAGCACAATCAAAAGCTTCT+TGG 0.411947 4:+74942823 None:intergenic
TTCTTCTTGACCTGCTCCTA+CGG 0.420831 4:+74943616 None:intergenic
TAGTAGGTGTTTACCATTGA+AGG 0.428646 4:+74942885 None:intergenic
TGATCGGGAGATGGTGGTGG+TGG 0.434100 4:+74943741 None:intergenic
TAAATGGAGAAGAGGGAGCA+GGG 0.441612 4:-74943173 MsG0480022638.01.T01:CDS
CGGGAGATGGTGGTGGTGGA+GGG 0.445862 4:+74943745 None:intergenic
AAAACATTAGGCTCCATAGA+TGG 0.447069 4:+74943252 None:intergenic
GATAGTGTAAATGGAGAAGA+GGG 0.449998 4:-74943180 MsG0480022638.01.T01:CDS
CAAATTGTTTCAAAGAAGGT+TGG 0.451324 4:-74942967 MsG0480022638.01.T01:CDS
GTAAATGGAGAAGAGGGAGC+AGG 0.452344 4:-74943174 MsG0480022638.01.T01:CDS
TGTTTGTTGCCTTGTTAACA+AGG 0.454438 4:+74943590 None:intergenic
ATTCTAATAGGGAGCAGGTA+GGG 0.460018 4:-74943002 MsG0480022638.01.T01:CDS
ATCTCAAAGGAATTCTAATA+GGG 0.463060 4:-74943013 MsG0480022638.01.T01:CDS
CTGTTGTAGACCACCCCATA+TGG 0.468648 4:-74943527 MsG0480022638.01.T01:CDS
AGGAGTTCGAATATACCATA+TGG 0.469214 4:+74943512 None:intergenic
TTCTAATAGGGAGCAGGTAG+GGG 0.469936 4:-74943001 MsG0480022638.01.T01:CDS
GTGTGATCGGGAGATGGTGG+TGG 0.473029 4:+74943738 None:intergenic
CCATAGATGGAATCCTTAAA+GGG 0.486494 4:+74943265 None:intergenic
TGTTTGGTGTGATCGGGAGA+TGG 0.496418 4:+74943732 None:intergenic
TCTTCTTGACCTGCTCCTAC+GGG 0.499195 4:+74943617 None:intergenic
GGAGTTCGAATATACCATAT+GGG 0.499977 4:+74943513 None:intergenic
AGATTCCACTGATAGAAACT+TGG 0.500324 4:+74943032 None:intergenic
TGAAAAGCATGGTTACACTT+TGG 0.507153 4:+74943360 None:intergenic
AGATAGTGTAAATGGAGAAG+AGG 0.510412 4:-74943181 MsG0480022638.01.T01:CDS
ATTAACACAGTTTGAGCTTG+TGG 0.518475 4:+74943797 None:intergenic
GTTAAGTATAAGAAAAGTGA+AGG 0.524340 4:-74943453 MsG0480022638.01.T01:CDS
ATATGGTATATTCGAACTCC+TGG 0.524437 4:-74943510 MsG0480022638.01.T01:CDS
ACAGTTTGAGCTTGTGGCTG+TGG 0.524699 4:+74943803 None:intergenic
GTAGGAGCAGGTCAAGAAGA+AGG 0.526080 4:-74943614 MsG0480022638.01.T01:CDS
AATAGGTCAAGATCCTTCAA+TGG 0.532700 4:-74942898 MsG0480022638.01.T01:CDS
CACAATCAAAAGCTTCTTGG+TGG 0.533808 4:+74942826 None:intergenic
AAGGAATTCTAATAGGGAGC+AGG 0.534515 4:-74943007 MsG0480022638.01.T01:CDS
GAAGAAGGGCCTTGTTAACA+AGG 0.539424 4:-74943599 MsG0480022638.01.T01:CDS
AAAACTTATGATCAAGTAAG+TGG 0.542639 4:+74943701 None:intergenic
CATCAACTGTCCTATGTGTA+GGG 0.546834 4:-74943304 MsG0480022638.01.T01:CDS
GTTGGTGAGGAACATGATGA+TGG 0.546994 4:-74943552 MsG0480022638.01.T01:CDS
AAATGGAGAAGAGGGAGCAG+GGG 0.553592 4:-74943172 MsG0480022638.01.T01:CDS
CTAAGCCAAGTATCAATACA+AGG 0.556828 4:+74943333 None:intergenic
ACATCAACTGTCCTATGTGT+AGG 0.558434 4:-74943305 MsG0480022638.01.T01:CDS
TGCTACTATACAAAGATAGT+AGG 0.558730 4:+74942869 None:intergenic
TTGGTGTGATCGGGAGATGG+TGG 0.559714 4:+74943735 None:intergenic
ATAATTGATTGTTGAAGACC+AGG 0.563360 4:+74943492 None:intergenic
CTTGACCTATTCATTGAACA+AGG 0.564638 4:+74942910 None:intergenic
TTCTATCAGTGGAATCTCAA+AGG 0.571216 4:-74943026 MsG0480022638.01.T01:CDS
AATTCTAATAGGGAGCAGGT+AGG 0.587934 4:-74943003 MsG0480022638.01.T01:CDS
TAGGAGCAGGTCAAGAAGAA+GGG 0.588050 4:-74943613 MsG0480022638.01.T01:CDS
ACAAGGCAACAAACAGAACA+TGG 0.590633 4:-74943582 MsG0480022638.01.T01:CDS
AGGTATTGCAGAATCTGAGT+TGG 0.600876 4:+74943772 None:intergenic
TCTCACCAAGTTTCTATCAG+TGG 0.602943 4:-74943037 MsG0480022638.01.T01:CDS
TACAAGGTAAATGAAAAGCA+TGG 0.610439 4:+74943349 None:intergenic
ACTTATGATCAAGTAAGTGG+TGG 0.619840 4:+74943704 None:intergenic
ACAATAGGAGCCCTACACAT+AGG 0.621522 4:+74943294 None:intergenic
TTCGAATATACCATATGGGG+TGG 0.638017 4:+74943517 None:intergenic
TTGGTGAGGAACATGATGAT+GGG 0.638415 4:-74943551 MsG0480022638.01.T01:CDS
GAGTTCGAATATACCATATG+GGG 0.682696 4:+74943514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAACTTATGATCAAGTAAG+TGG + Chr4:74943003-74943022 None:intergenic 25.0%
! AATCTCAAAGGAATTCTAAT+AGG - Chr4:74943687-74943706 MsG0480022638.01.T01:CDS 25.0%
! ATCTCAAAGGAATTCTAATA+GGG - Chr4:74943688-74943707 MsG0480022638.01.T01:CDS 25.0%
! GTTAAGTATAAGAAAAGTGA+AGG - Chr4:74943248-74943267 MsG0480022638.01.T01:CDS 25.0%
! TGAACAAATTGTTTCAAAGA+AGG - Chr4:74943730-74943749 MsG0480022638.01.T01:CDS 25.0%
!! ATTTACCTTGTATTGATACT+TGG - Chr4:74943363-74943382 MsG0480022638.01.T01:CDS 25.0%
!!! ATTGAAGTTTTGGAAAATAG+TGG - Chr4:74943488-74943507 MsG0480022638.01.T01:CDS 25.0%
AAAAGTGAAGGTTTGATTGA+TGG - Chr4:74943260-74943279 MsG0480022638.01.T01:CDS 30.0%
ATAATTGATTGTTGAAGACC+AGG + Chr4:74943212-74943231 None:intergenic 30.0%
CAAATTGTTTCAAAGAAGGT+TGG - Chr4:74943734-74943753 MsG0480022638.01.T01:CDS 30.0%
GAACTTTCCACAAAAACATT+AGG + Chr4:74943464-74943483 None:intergenic 30.0%
GGAAATGAAGATAGTGTAAA+TGG - Chr4:74943512-74943531 MsG0480022638.01.T01:CDS 30.0%
TACAAGGTAAATGAAAAGCA+TGG + Chr4:74943355-74943374 None:intergenic 30.0%
TGCTACTATACAAAGATAGT+AGG + Chr4:74943835-74943854 None:intergenic 30.0%
! AAGTTCTCAGATTGAAGTTT+TGG - Chr4:74943478-74943497 MsG0480022638.01.T01:CDS 30.0%
AAAACATTAGGCTCCATAGA+TGG + Chr4:74943452-74943471 None:intergenic 35.0%
AATAGGTCAAGATCCTTCAA+TGG - Chr4:74943803-74943822 MsG0480022638.01.T01:CDS 35.0%
ACTTATGATCAAGTAAGTGG+TGG + Chr4:74943000-74943019 None:intergenic 35.0%
AGATAGTGTAAATGGAGAAG+AGG - Chr4:74943520-74943539 MsG0480022638.01.T01:CDS 35.0%
AGATTCCACTGATAGAAACT+TGG + Chr4:74943672-74943691 None:intergenic 35.0%
AGGAGTTCGAATATACCATA+TGG + Chr4:74943192-74943211 None:intergenic 35.0%
ATATGGTATATTCGAACTCC+TGG - Chr4:74943191-74943210 MsG0480022638.01.T01:CDS 35.0%
ATTAACACAGTTTGAGCTTG+TGG + Chr4:74942907-74942926 None:intergenic 35.0%
CCATAGATGGAATCCTTAAA+GGG + Chr4:74943439-74943458 None:intergenic 35.0%
CTAAGCCAAGTATCAATACA+AGG + Chr4:74943371-74943390 None:intergenic 35.0%
CTTAAAGGGTCAACAACAAT+AGG + Chr4:74943425-74943444 None:intergenic 35.0%
CTTGACCTATTCATTGAACA+AGG + Chr4:74943794-74943813 None:intergenic 35.0%
GAGTTCGAATATACCATATG+GGG + Chr4:74943190-74943209 None:intergenic 35.0%
GATAGTGTAAATGGAGAAGA+GGG - Chr4:74943521-74943540 MsG0480022638.01.T01:CDS 35.0%
GGAGAAAAACTTGACATAGA+AGG + Chr4:74943066-74943085 None:intergenic 35.0%
GGAGTTCGAATATACCATAT+GGG + Chr4:74943191-74943210 None:intergenic 35.0%
TAGTAGGTGTTTACCATTGA+AGG + Chr4:74943819-74943838 None:intergenic 35.0%
TCAAGAGAAACTGATCTTCT+TGG + Chr4:74943614-74943633 None:intergenic 35.0%
TCCATAGATGGAATCCTTAA+AGG + Chr4:74943440-74943459 None:intergenic 35.0%
TTCTATCAGTGGAATCTCAA+AGG - Chr4:74943675-74943694 MsG0480022638.01.T01:CDS 35.0%
! CTATTGTTGTTGACCCTTTA+AGG - Chr4:74943423-74943442 MsG0480022638.01.T01:CDS 35.0%
! TGAAAAGCATGGTTACACTT+TGG + Chr4:74943344-74943363 None:intergenic 35.0%
! TGTTTGTTGCCTTGTTAACA+AGG + Chr4:74943114-74943133 None:intergenic 35.0%
!! CAAAGAAGGTTGGTGAAAAT+GGG - Chr4:74943744-74943763 MsG0480022638.01.T01:CDS 35.0%
!! TATGGAGCCTAATGTTTTTG+TGG - Chr4:74943454-74943473 MsG0480022638.01.T01:CDS 35.0%
!! TCAAAGAAGGTTGGTGAAAA+TGG - Chr4:74943743-74943762 MsG0480022638.01.T01:CDS 35.0%
!!! ACAGAACATGGTTTTGTTGT+TGG - Chr4:74943131-74943150 MsG0480022638.01.T01:CDS 35.0%
!!! GAAGTTTTGGAAAATAGTGG+TGG - Chr4:74943491-74943510 MsG0480022638.01.T01:CDS 35.0%
AAGGAATTCTAATAGGGAGC+AGG - Chr4:74943694-74943713 MsG0480022638.01.T01:CDS 40.0%
AATTCTAATAGGGAGCAGGT+AGG - Chr4:74943698-74943717 MsG0480022638.01.T01:CDS 40.0%
ACAAGGCAACAAACAGAACA+TGG - Chr4:74943119-74943138 MsG0480022638.01.T01:CDS 40.0%
ACATCAACTGTCCTATGTGT+AGG - Chr4:74943396-74943415 MsG0480022638.01.T01:CDS 40.0%
AGAAGATGAGAGTTCAGCTT+TGG - Chr4:74943571-74943590 MsG0480022638.01.T01:CDS 40.0%
AGGCATAGCAGCAAAAAACA+AGG + Chr4:74943046-74943065 None:intergenic 40.0%
ATTCTAATAGGGAGCAGGTA+GGG - Chr4:74943699-74943718 MsG0480022638.01.T01:CDS 40.0%
CATCAACTGTCCTATGTGTA+GGG - Chr4:74943397-74943416 MsG0480022638.01.T01:CDS 40.0%
GTGCTCCTTGTTCAATGAAT+AGG - Chr4:74943786-74943805 MsG0480022638.01.T01:CDS 40.0%
TCTCACCAAGTTTCTATCAG+TGG - Chr4:74943664-74943683 MsG0480022638.01.T01:CDS 40.0%
TTCGAATATACCATATGGGG+TGG + Chr4:74943187-74943206 None:intergenic 40.0%
TTGGTGAGGAACATGATGAT+GGG - Chr4:74943150-74943169 MsG0480022638.01.T01:CDS 40.0%
! AGGTATTGCAGAATCTGAGT+TGG + Chr4:74942932-74942951 None:intergenic 40.0%
! ATGTCAAGTTTTTCTCCCGT+AGG - Chr4:74943069-74943088 MsG0480022638.01.T01:CDS 40.0%
! CCCTTTAAGGATTCCATCTA+TGG - Chr4:74943436-74943455 MsG0480022638.01.T01:CDS 40.0%
!! GGTTGGTGAAAATGGGAATA+TGG - Chr4:74943751-74943770 MsG0480022638.01.T01:CDS 40.0%
!!! ACATGGTTTTGTTGTTGGTG+AGG - Chr4:74943136-74943155 MsG0480022638.01.T01:CDS 40.0%
!!! GGTTTTGTGTTTGGTGTGAT+CGG + Chr4:74942979-74942998 None:intergenic 40.0%
!!! GTAAGTGGTGGTTTTGTGTT+TGG + Chr4:74942988-74943007 None:intergenic 40.0%
!!! GTTTTGTGTTTGGTGTGATC+GGG + Chr4:74942978-74942997 None:intergenic 40.0%
ACAATAGGAGCCCTACACAT+AGG + Chr4:74943410-74943429 None:intergenic 45.0%
TAAATGGAGAAGAGGGAGCA+GGG - Chr4:74943528-74943547 MsG0480022638.01.T01:CDS 45.0%
TAGGAGCAGGTCAAGAAGAA+GGG - Chr4:74943088-74943107 MsG0480022638.01.T01:CDS 45.0%
TTCTAATAGGGAGCAGGTAG+GGG - Chr4:74943700-74943719 MsG0480022638.01.T01:CDS 45.0%
TTCTTCTTGACCTGCTCCTA+CGG + Chr4:74943088-74943107 None:intergenic 45.0%
! GTTGGTGAGGAACATGATGA+TGG - Chr4:74943149-74943168 MsG0480022638.01.T01:CDS 45.0%
!! GAAGAAGGGCCTTGTTAACA+AGG - Chr4:74943102-74943121 MsG0480022638.01.T01:CDS 45.0%
AAATGGAGAAGAGGGAGCAG+GGG - Chr4:74943529-74943548 MsG0480022638.01.T01:CDS 50.0%
ACAGTTTGAGCTTGTGGCTG+TGG + Chr4:74942901-74942920 None:intergenic 50.0%
CTGTTGTAGACCACCCCATA+TGG - Chr4:74943174-74943193 MsG0480022638.01.T01:CDS 50.0%
GGGGAAGAGGTTGAGGAAAA+TGG - Chr4:74943548-74943567 MsG0480022638.01.T01:CDS 50.0%
GTAAATGGAGAAGAGGGAGC+AGG - Chr4:74943527-74943546 MsG0480022638.01.T01:CDS 50.0%
GTAGGAGCAGGTCAAGAAGA+AGG - Chr4:74943087-74943106 MsG0480022638.01.T01:CDS 50.0%
TCTTCTTGACCTGCTCCTAC+GGG + Chr4:74943087-74943106 None:intergenic 50.0%
! AGTTTTTCTCCCGTAGGAGC+AGG - Chr4:74943075-74943094 MsG0480022638.01.T01:CDS 50.0%
!! TGTTTGGTGTGATCGGGAGA+TGG + Chr4:74942972-74942991 None:intergenic 50.0%
TTGGTGTGATCGGGAGATGG+TGG + Chr4:74942969-74942988 None:intergenic 55.0%
AGAAGAGGGAGCAGGGGAAG+AGG - Chr4:74943535-74943554 MsG0480022638.01.T01:CDS 60.0%
! GTGTGATCGGGAGATGGTGG+TGG + Chr4:74942966-74942985 None:intergenic 60.0%
!! TGATCGGGAGATGGTGGTGG+TGG + Chr4:74942963-74942982 None:intergenic 60.0%
!! TGGTGGTGGTGGAGGGTTGT+AGG + Chr4:74942952-74942971 None:intergenic 60.0%
GGGAGCAGGGGAAGAGGTTG+AGG - Chr4:74943541-74943560 MsG0480022638.01.T01:CDS 65.0%
!! CGGGAGATGGTGGTGGTGGA+GGG + Chr4:74942959-74942978 None:intergenic 65.0%
!! TCGGGAGATGGTGGTGGTGG+AGG + Chr4:74942960-74942979 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 74942831 74943892 74942831 ID=MsG0480022638.01;Name=MsG0480022638.01
Chr4 mRNA 74942831 74943892 74942831 ID=MsG0480022638.01.T01;Parent=MsG0480022638.01;Name=MsG0480022638.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|353
Chr4 exon 74942831 74943892 74942831 ID=MsG0480022638.01.T01:exon:3127;Parent=MsG0480022638.01.T01
Chr4 CDS 74942831 74943892 74942831 ID=MsG0480022638.01.T01:cds;Parent=MsG0480022638.01.T01
Gene Sequence

>MsG0480022638.01.T01

ATGGGACTTCATCACAGAAAACTCTTGTCTGAATCTGAATGTGAAATCTTCTGTCATGATGATTGTACCACAGCCACAAGCTCAAACTGTGTTAATTGCCAACTCAGATTCTGCAATACCTACAACCCTCCACCACCACCATCTCCCGATCACACCAAACACAAAACCACCACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTATTTTCCTTGTTTTTTGCTGCTATGCCTTCTATGTCAAGTTTTTCTCCCGTAGGAGCAGGTCAAGAAGAAGGGCCTTGTTAACAAGGCAACAAACAGAACATGGTTTTGTTGTTGGTGAGGAACATGATGATGGGTCTGTTGTAGACCACCCCATATGGTATATTCGAACTCCTGGTCTTCAACAATCAATTATCAATGCAATCACTGTTGTTAAGTATAAGAAAAGTGAAGGTTTGATTGATGGATCAGATTGTTCTGTTTGCTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTGCCAAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACACATCAACTGTCCTATGTGTAGGGCTCCTATTGTTGTTGACCCTTTAAGGATTCCATCTATGGAGCCTAATGTTTTTGTGGAAAGTTCTCAGATTGAAGTTTTGGAAAATAGTGGTGGAAATGAAGATAGTGTAAATGGAGAAGAGGGAGCAGGGGAAGAGGTTGAGGAAAATGGAGAAGATGAGAGTTCAGCTTTGGAGATGCTAAATATGCAGCCAAGAAGATCAGTTTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTCACCAAGTTTCTATCAGTGGAATCTCAAAGGAATTCTAATAGGGAGCAGGTAGGGGAAGTCAATGAACAAATTGTTTCAAAGAAGGTTGGTGAAAATGGGAATATGGTAAATATGCATAGTGCTCCTTGTTCAATGAATAGGTCAAGATCCTTCAATGGTAAACACCTACTATCTTTGTATAGTAGCAGTCAGAAAAAGAAAAATGCTCCACCAAGAAGCTTTTGA

Protein sequence

>MsG0480022638.01.T01

MGLHHRKLLSESECEIFCHDDCTTATSSNCVNCQLRFCNTYNPPPPPSPDHTKHKTTTYLIISFSIVAAIFLVFCCYAFYVKFFSRRSRSRRRALLTRQQTEHGFVVGEEHDDGSVVDHPIWYIRTPGLQQSIINAITVVKYKKSEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHINCPMCRAPIVVDPLRIPSMEPNVFVESSQIEVLENSGGNEDSVNGEEGAGEEVEENGEDESSALEMLNMQPRRSVSLDSSSAAKINLALTKFLSVESQRNSNREQVGEVNEQIVSKKVGENGNMVNMHSAPCSMNRSRSFNGKHLLSLYSSSQKKKNAPPRSF*