AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016746.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016746.01.T01 MTR_3g094650 94.928 138 7 0 1 138 1 138 2.02e-92 270
MsG0380016746.01.T01 MTR_3g094630 87.681 138 17 0 1 138 1 138 5.17e-77 231
MsG0380016746.01.T01 MTR_3g094670 87.681 138 17 0 1 138 1 138 4.71e-76 229
MsG0380016746.01.T01 MTR_5g083860 72.441 127 34 1 12 138 16 141 7.36e-60 187
MsG0380016746.01.T01 MTR_3g466200 66.667 129 43 0 10 138 7 135 2.43e-57 181
MsG0380016746.01.T01 MTR_2g084020 66.667 126 42 0 13 138 10 135 8.04e-56 177
MsG0380016746.01.T01 MTR_2g084110 66.667 126 42 0 13 138 10 135 1.11e-55 177
MsG0380016746.01.T01 MTR_2g084010 65.873 126 43 0 13 138 10 135 8.51e-55 174
MsG0380016746.01.T01 MTR_2g084080 68.033 122 39 0 14 135 11 132 7.69e-54 172
MsG0380016746.01.T01 MTR_2g084090 65.625 128 44 0 11 138 8 135 8.42e-54 172
MsG0380016746.01.T01 MTR_5g074970 61.029 136 48 2 4 135 3 137 4.30e-52 167
MsG0380016746.01.T01 MTR_1g115900 61.417 127 48 1 11 136 9 135 1.38e-51 166
MsG0380016746.01.T01 MTR_7g072480 60.630 127 50 0 9 135 5 131 7.31e-51 164
MsG0380016746.01.T01 MTR_7g072510 64.167 120 43 0 16 135 8 127 1.21e-50 164
MsG0380016746.01.T01 MTR_2g084000 61.538 130 46 1 9 138 11 136 3.42e-50 162
MsG0380016746.01.T01 MTR_5g017850 60.800 125 46 1 11 135 13 134 2.66e-49 160
MsG0380016746.01.T01 MTR_3g072260 62.500 128 39 2 17 135 6 133 1.11e-48 153
MsG0380016746.01.T01 MTR_4g074980 58.730 126 52 0 9 134 6 131 2.23e-48 156
MsG0380016746.01.T01 MTR_4g125940 62.097 124 45 1 12 135 12 133 3.61e-48 158
MsG0380016746.01.T01 MTR_3g072190 59.398 133 48 1 9 135 1 133 4.01e-48 157
MsG0380016746.01.T01 MTR_4g074980 58.730 126 52 0 9 134 6 131 4.46e-48 156
MsG0380016746.01.T01 MTR_4g074990 59.350 123 49 1 13 134 8 130 6.23e-48 156
MsG0380016746.01.T01 MTR_5g074860 57.463 134 56 1 6 138 7 140 1.51e-47 155
MsG0380016746.01.T01 MTR_7g093370 57.246 138 51 2 8 137 42 179 2.36e-47 157
MsG0380016746.01.T01 MTR_5g074710 58.915 129 52 1 11 138 8 136 5.05e-47 154
MsG0380016746.01.T01 MTR_5g074860 57.463 134 56 1 6 138 7 140 5.91e-47 154
MsG0380016746.01.T01 MTR_4g074995 58.268 127 53 0 8 134 4 130 6.90e-47 154
MsG0380016746.01.T01 MTR_4g083710 59.200 125 50 1 11 134 9 133 1.02e-46 154
MsG0380016746.01.T01 MTR_5g074760 57.463 134 52 2 10 138 3 136 2.62e-46 153
MsG0380016746.01.T01 MTR_5g017860 57.258 124 51 1 14 135 11 134 2.82e-46 153
MsG0380016746.01.T01 MTR_5g074740 60.317 126 49 1 14 138 11 136 4.95e-46 152
MsG0380016746.01.T01 MTR_3g466180 64.602 113 40 0 11 123 14 126 8.11e-46 151
MsG0380016746.01.T01 MTR_1g054205 55.725 131 56 2 10 138 5 135 3.50e-45 150
MsG0380016746.01.T01 MTR_7g026990 55.200 125 55 1 15 138 17 141 1.40e-44 148
MsG0380016746.01.T01 MTR_4g029200 56.637 113 49 0 26 138 44 156 3.07e-44 148
MsG0380016746.01.T01 MTR_4g122640 61.111 108 42 0 28 135 38 145 6.55e-43 144
MsG0380016746.01.T01 MTR_2g029815 55.000 120 54 0 12 131 13 132 4.55e-42 142
MsG0380016746.01.T01 MTR_4g029170 55.039 129 56 2 9 135 7 135 4.40e-41 139
MsG0380016746.01.T01 MTR_4g030890 55.085 118 53 0 21 138 93 210 1.34e-40 140
MsG0380016746.01.T01 MTR_2g040000 54.815 135 57 2 5 137 4 136 2.18e-40 137
MsG0380016746.01.T01 MTR_5g049280 53.448 116 54 0 23 138 28 143 2.81e-40 137
MsG0380016746.01.T01 MTR_2g029560 57.522 113 48 0 19 131 15 127 6.25e-40 137
MsG0380016746.01.T01 MTR_2g029820 50.781 128 59 1 8 131 5 132 1.02e-39 136
MsG0380016746.01.T01 MTR_4g029180 63.208 106 38 1 31 135 30 135 1.49e-39 135
MsG0380016746.01.T01 MTR_5g021060 55.856 111 49 0 28 138 30 140 1.75e-39 135
MsG0380016746.01.T01 MTR_0155s0040 45.455 132 71 1 7 138 6 136 2.18e-39 135
MsG0380016746.01.T01 MTR_4g031140 49.624 133 63 1 10 138 6 138 2.90e-39 135
MsG0380016746.01.T01 MTR_2g029730 54.867 113 51 0 19 131 16 128 9.24e-39 134
MsG0380016746.01.T01 MTR_2g029910 50.000 128 60 1 8 131 6 133 9.95e-39 134
MsG0380016746.01.T01 MTR_8g076820 52.459 122 58 0 17 138 19 140 1.40e-38 133
MsG0380016746.01.T01 MTR_2g029860 52.632 133 60 2 1 131 1 132 2.16e-38 133
MsG0380016746.01.T01 MTR_2g029830 56.250 112 49 0 23 134 23 134 2.61e-38 133
MsG0380016746.01.T01 MTR_2g029750 55.085 118 53 0 14 131 15 132 3.20e-38 132
MsG0380016746.01.T01 MTR_1g022970 55.455 110 49 0 28 137 46 155 3.96e-38 132
MsG0380016746.01.T01 MTR_3g467600 50.394 127 62 1 14 139 13 139 6.39e-38 131
MsG0380016746.01.T01 MTR_2g029850 51.181 127 58 1 9 131 6 132 6.75e-38 132
MsG0380016746.01.T01 MTR_4g114210 55.738 122 47 3 17 135 7 124 1.30e-37 130
MsG0380016746.01.T01 MTR_2g029740 53.390 118 55 0 14 131 15 132 2.47e-37 130
MsG0380016746.01.T01 MTR_4g046713 48.000 125 64 1 14 138 13 136 2.75e-37 129
MsG0380016746.01.T01 MTR_2g028980 55.556 117 52 0 15 131 16 132 3.90e-37 130
MsG0380016746.01.T01 MTR_2g029800 48.819 127 61 1 9 131 6 132 1.54e-36 128
MsG0380016746.01.T01 MTR_2g088770 50.400 125 60 2 12 136 10 132 2.04e-36 127
MsG0380016746.01.T01 MTR_4g029190 49.573 117 58 1 20 135 37 153 8.72e-36 126
MsG0380016746.01.T01 MTR_4g125940 78.481 79 15 1 57 135 2 78 1.30e-35 124
MsG0380016746.01.T01 MTR_6g027440 46.774 124 65 1 14 137 7 129 7.19e-35 123
MsG0380016746.01.T01 MTR_1g101830 47.445 137 70 2 1 137 1 135 9.24e-35 123
MsG0380016746.01.T01 MTR_1g077000 44.118 136 67 2 8 135 11 145 1.51e-34 122
MsG0380016746.01.T01 MTR_7g107520 47.541 122 63 1 13 134 10 130 1.81e-34 122
MsG0380016746.01.T01 MTR_1g025980 45.802 131 70 1 7 137 3 132 2.78e-34 121
MsG0380016746.01.T01 MTR_5g014100 52.727 110 52 0 28 137 26 135 2.79e-34 122
MsG0380016746.01.T01 MTR_2g067440 52.727 110 50 2 26 135 58 165 4.07e-33 120
MsG0380016746.01.T01 MTR_3g092990 44.531 128 70 1 14 141 13 139 1.42e-32 117
MsG0380016746.01.T01 MTR_2g008160 48.718 117 57 2 21 137 17 130 1.79e-32 114
MsG0380016746.01.T01 MTR_2g078280 49.123 114 55 2 26 137 74 186 5.53e-32 117
MsG0380016746.01.T01 MTR_7g086820 48.246 114 58 1 24 137 16 128 6.14e-32 115
MsG0380016746.01.T01 MTR_1g086490 43.284 134 73 1 9 139 8 141 1.68e-31 115
MsG0380016746.01.T01 MTR_8g075100 48.673 113 57 1 23 135 21 132 2.10e-31 114
MsG0380016746.01.T01 MTR_2g078610 49.123 114 55 2 26 137 74 186 2.36e-31 115
MsG0380016746.01.T01 MTR_2g008160 47.899 119 59 2 21 139 17 132 4.09e-31 112
MsG0380016746.01.T01 MTR_2g077990 49.123 114 55 2 26 137 74 186 4.97e-31 114
MsG0380016746.01.T01 MTR_2g008160 47.899 119 59 2 21 139 17 132 6.15e-31 113
MsG0380016746.01.T01 MTR_1g086320 42.537 134 74 1 9 139 8 141 6.66e-31 113
MsG0380016746.01.T01 MTR_5g022870 43.411 129 71 2 9 137 5 131 1.45e-30 112
MsG0380016746.01.T01 MTR_2g008710 42.857 133 67 3 10 137 4 132 2.25e-29 108
MsG0380016746.01.T01 MTR_7g086870 45.536 112 60 1 26 137 20 130 4.59e-29 108
MsG0380016746.01.T01 MTR_2g437770 46.296 108 54 1 28 135 50 153 1.17e-28 107
MsG0380016746.01.T01 MTR_7g029030 41.667 132 75 2 8 138 5 135 1.18e-28 107
MsG0380016746.01.T01 MTR_1g090760 43.077 130 68 3 15 138 11 140 6.62e-27 102
MsG0380016746.01.T01 MTR_1g038680 46.667 105 55 1 32 135 33 137 1.45e-26 101
MsG0380016746.01.T01 MTR_4g132490 42.017 119 69 0 19 137 20 138 6.74e-26 100
MsG0380016746.01.T01 MTR_2g099175 45.133 113 59 2 27 139 35 144 1.20e-25 99.4
MsG0380016746.01.T01 MTR_3g105790 40.152 132 71 3 10 137 3 130 4.53e-25 97.8
MsG0380016746.01.T01 MTR_4g114220 52.747 91 33 2 45 135 20 100 9.79e-25 92.8
MsG0380016746.01.T01 MTR_1g089005 40.945 127 68 2 14 134 1 126 1.18e-24 92.8
MsG0380016746.01.T01 MTR_2g067450 47.321 112 55 3 26 135 9 118 2.09e-24 95.9
MsG0380016746.01.T01 MTR_3g072190 70.312 64 19 0 72 135 3 66 5.41e-24 93.6
MsG0380016746.01.T01 MTR_4g087965 42.982 114 62 2 27 137 41 154 6.74e-24 94.7
MsG0380016746.01.T01 MTR_1g066380 41.071 112 63 2 26 136 25 134 1.04e-23 94.0
MsG0380016746.01.T01 MTR_6g043460 38.889 144 79 2 1 135 1 144 1.04e-23 94.4
MsG0380016746.01.T01 MTR_4g133800 43.396 106 56 2 29 134 42 143 1.84e-23 93.6
MsG0380016746.01.T01 MTR_7g072490 67.742 62 20 0 74 135 2 63 1.93e-23 91.3
MsG0380016746.01.T01 MTR_1g066710 38.793 116 68 2 24 138 23 136 3.05e-23 92.8
MsG0380016746.01.T01 MTR_6g043280 44.144 111 56 3 28 135 41 148 4.33e-23 92.4
MsG0380016746.01.T01 MTR_5g016010 39.552 134 76 3 9 137 6 139 5.37e-23 92.4
MsG0380016746.01.T01 MTR_1g066640 38.938 113 68 1 26 138 25 136 8.50e-23 91.7
MsG0380016746.01.T01 MTR_4g132110 37.037 135 81 3 9 141 12 144 9.36e-23 91.7
MsG0380016746.01.T01 MTR_4g132110 38.760 129 75 3 9 135 12 138 1.91e-22 90.9
MsG0380016746.01.T01 MTR_3g092990 39.844 128 65 2 14 141 13 128 2.86e-22 90.1
MsG0380016746.01.T01 MTR_1g066680 38.462 117 70 2 24 140 23 137 3.53e-22 90.1
MsG0380016746.01.T01 MTR_8g062780 41.860 129 73 2 11 138 7 134 4.51e-22 89.7
MsG0380016746.01.T01 MTR_1g009750 39.695 131 75 3 11 138 10 139 4.99e-22 89.7
MsG0380016746.01.T01 MTR_4g095450 41.221 131 73 3 11 137 9 139 1.64e-21 88.2
MsG0380016746.01.T01 MTR_6g048160 55.405 74 29 2 67 140 22 91 2.55e-21 82.4
MsG0380016746.01.T01 MTR_5g033470 40.171 117 65 2 22 135 67 181 2.95e-21 88.2
MsG0380016746.01.T01 MTR_6g043240 35.294 136 73 4 11 135 16 147 6.41e-21 87.0
MsG0380016746.01.T01 MTR_0286s0010 40.310 129 64 4 14 133 17 141 1.02e-20 86.3
MsG0380016746.01.T01 MTR_6g008075 40.310 129 64 4 14 133 17 141 1.02e-20 86.3
MsG0380016746.01.T01 MTR_2g029830 57.377 61 26 0 74 134 6 66 2.68e-18 79.0
MsG0380016746.01.T01 MTR_0147s0010 37.168 113 58 2 25 137 74 173 5.73e-18 79.0
MsG0380016746.01.T01 MTR_2g029930 39.216 102 34 3 24 111 15 102 1.23e-17 73.6
MsG0380016746.01.T01 MTR_4g127670 39.130 115 62 3 27 137 23 133 3.82e-16 73.6
MsG0380016746.01.T01 MTR_1g009750 38.182 110 65 3 11 119 10 117 1.36e-15 72.0
MsG0380016746.01.T01 MTR_2g008730 33.835 133 55 3 10 137 4 108 1.05e-14 69.3
MsG0380016746.01.T01 MTR_7g086790 50.794 63 30 1 75 137 17 78 1.46e-13 65.1
MsG0380016746.01.T01 MTR_4g012865 36.620 71 45 0 25 95 74 144 4.80e-12 60.1
MsG0380016746.01.T01 MTR_7g086810 30.702 114 53 1 24 137 2 89 5.28e-12 61.2
MsG0380016746.01.T01 MTR_3g086710 52.174 46 22 0 28 73 19 64 9.63e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016746.01.T01 AT5G05340 80.909 110 21 0 26 135 28 137 2.49e-60 189
MsG0380016746.01.T01 AT5G58400 64.062 128 45 1 12 138 13 140 2.11e-53 171
MsG0380016746.01.T01 AT5G06720 56.296 135 58 1 5 138 8 142 1.39e-49 161
MsG0380016746.01.T01 AT5G06730 54.074 135 61 1 5 138 9 143 6.90e-48 158
MsG0380016746.01.T01 AT5G58390 59.200 125 51 0 14 138 7 131 7.26e-46 151
MsG0380016746.01.T01 AT1G49570 56.637 113 49 0 26 138 46 158 2.97e-43 145
MsG0380016746.01.T01 AT5G19890 57.364 129 49 2 9 137 14 136 5.74e-43 144
MsG0380016746.01.T01 AT4G08780 57.895 114 48 0 24 137 20 133 7.64e-42 142
MsG0380016746.01.T01 AT4G08770 58.261 115 48 0 24 138 20 134 8.87e-42 142
MsG0380016746.01.T01 AT2G22420 52.672 131 62 0 7 137 2 132 1.89e-41 140
MsG0380016746.01.T01 AT4G16270 57.273 110 47 0 28 137 50 159 4.89e-41 140
MsG0380016746.01.T01 AT5G19880 51.908 131 58 2 9 137 9 136 5.27e-41 139
MsG0380016746.01.T01 AT1G14550 51.163 129 61 1 12 138 8 136 5.30e-41 139
MsG0380016746.01.T01 AT3G01190 50.376 133 63 3 4 135 1 131 7.96e-41 139
MsG0380016746.01.T01 AT2G38390 50.758 132 65 0 4 135 7 138 1.04e-40 139
MsG0380016746.01.T01 AT1G44970 57.759 116 49 0 20 135 37 152 3.27e-40 137
MsG0380016746.01.T01 AT3G32980 53.125 128 60 0 10 137 13 140 3.81e-40 137
MsG0380016746.01.T01 AT1G14540 52.000 125 60 0 14 138 7 131 7.92e-40 136
MsG0380016746.01.T01 AT3G49120 55.357 112 50 0 26 137 30 141 6.74e-39 134
MsG0380016746.01.T01 AT3G50990 55.652 115 51 0 23 137 36 150 9.48e-39 134
MsG0380016746.01.T01 AT4G36430 52.679 112 53 0 23 134 25 136 1.38e-38 133
MsG0380016746.01.T01 AT3G49110 54.386 114 52 0 24 137 29 142 3.46e-38 132
MsG0380016746.01.T01 AT2G38380 50.758 132 65 0 4 135 7 138 4.64e-38 132
MsG0380016746.01.T01 AT5G66390 55.856 111 49 0 28 138 33 143 1.22e-37 130
MsG0380016746.01.T01 AT2G18150 43.448 145 69 1 7 138 2 146 1.44e-37 130
MsG0380016746.01.T01 AT2G18140 50.000 118 59 0 21 138 28 145 4.23e-37 129
MsG0380016746.01.T01 AT2G35380 51.724 116 56 0 20 135 22 137 2.04e-36 127
MsG0380016746.01.T01 AT1G68850 46.847 111 59 0 28 138 30 140 3.26e-36 127
MsG0380016746.01.T01 AT5G42180 46.875 128 66 2 11 137 5 131 2.33e-34 122
MsG0380016746.01.T01 AT3G03670 47.287 129 66 2 8 135 2 129 5.14e-34 121
MsG0380016746.01.T01 AT1G05260 48.000 125 62 3 12 135 9 131 8.93e-34 120
MsG0380016746.01.T01 AT1G77100 49.242 132 59 3 11 136 1 130 2.12e-33 119
MsG0380016746.01.T01 AT4G11290 45.255 137 68 3 9 139 1 136 2.58e-33 119
MsG0380016746.01.T01 AT5G15180 45.312 128 65 4 11 135 12 137 3.20e-33 119
MsG0380016746.01.T01 AT4G25980 45.600 125 65 2 13 137 56 177 4.30e-32 115
MsG0380016746.01.T01 AT2G41480 47.619 126 60 4 14 137 13 134 6.33e-32 115
MsG0380016746.01.T01 AT5G64120 54.808 104 43 2 32 135 39 138 8.42e-32 115
MsG0380016746.01.T01 AT5G14130 44.275 131 71 2 9 138 13 142 1.50e-31 115
MsG0380016746.01.T01 AT4G25980 45.600 125 65 2 13 137 11 132 2.57e-31 114
MsG0380016746.01.T01 AT5G14130 44.275 131 71 2 9 138 54 183 2.60e-31 115
MsG0380016746.01.T01 AT4G26010 46.341 123 65 1 16 138 10 131 3.09e-31 113
MsG0380016746.01.T01 AT4G33420 48.148 108 55 1 28 135 37 143 3.22e-31 114
MsG0380016746.01.T01 AT5G17820 47.200 125 62 2 13 137 9 129 4.26e-31 113
MsG0380016746.01.T01 AT4G26010 46.341 123 65 1 16 138 38 159 4.72e-31 114
MsG0380016746.01.T01 AT3G21770 43.966 116 63 2 20 135 21 134 5.16e-31 113
MsG0380016746.01.T01 AT4G33420 48.148 108 55 1 28 135 84 190 7.27e-31 114
MsG0380016746.01.T01 AT5G17820 47.200 125 62 2 13 137 62 182 8.82e-31 113
MsG0380016746.01.T01 AT5G51890 40.741 135 78 2 4 137 1 134 2.96e-30 111
MsG0380016746.01.T01 AT4G31760 43.939 132 68 2 4 135 7 132 3.67e-30 111
MsG0380016746.01.T01 AT4G33870 43.750 112 62 1 26 137 66 176 5.09e-30 112
MsG0380016746.01.T01 AT5G22410 46.269 134 67 3 7 139 6 135 5.54e-30 110
MsG0380016746.01.T01 AT1G05240 43.243 111 61 2 28 138 26 134 2.61e-29 108
MsG0380016746.01.T01 AT1G05250 43.243 111 61 2 28 138 26 134 2.61e-29 108
MsG0380016746.01.T01 AT5G64100 42.446 139 64 3 11 137 8 142 5.83e-29 108
MsG0380016746.01.T01 AT5G39580 44.615 130 66 3 12 139 7 132 1.62e-28 105
MsG0380016746.01.T01 AT1G34510 44.715 123 65 2 16 137 10 130 1.97e-28 106
MsG0380016746.01.T01 AT1G71695 43.243 111 62 1 28 137 44 154 5.16e-28 106
MsG0380016746.01.T01 AT2G24800 47.273 110 54 1 26 135 29 134 7.05e-28 103
MsG0380016746.01.T01 AT5G39580 44.615 130 66 3 12 139 7 132 1.18e-27 104
MsG0380016746.01.T01 AT2G24800 47.273 110 54 1 26 135 29 134 9.69e-27 102
MsG0380016746.01.T01 AT5G47000 44.275 131 70 2 11 139 16 145 1.22e-26 102
MsG0380016746.01.T01 AT1G30870 44.231 104 54 1 28 131 51 150 1.57e-26 102
MsG0380016746.01.T01 AT2G39040 43.103 116 64 2 22 136 40 154 1.76e-26 102
MsG0380016746.01.T01 AT3G28200 43.103 116 57 2 23 133 16 127 6.45e-26 99.8
MsG0380016746.01.T01 AT4G17690 43.443 122 66 2 20 139 18 138 2.38e-25 98.6
MsG0380016746.01.T01 AT4G21960 42.017 119 66 2 21 138 24 140 1.41e-24 96.7
MsG0380016746.01.T01 AT2G34060 46.154 117 58 4 25 137 39 154 1.73e-24 96.7
MsG0380016746.01.T01 AT5G40150 41.322 121 62 2 23 138 27 143 2.27e-24 95.9
MsG0380016746.01.T01 AT1G24110 42.537 134 72 3 9 138 1 133 2.80e-24 95.9
MsG0380016746.01.T01 AT5G67400 41.304 138 69 4 9 135 1 137 3.01e-24 95.5
MsG0380016746.01.T01 AT3G49960 43.066 137 68 4 9 135 1 137 9.31e-24 94.4
MsG0380016746.01.T01 AT2G18980 44.361 133 63 5 12 138 7 134 1.04e-23 94.0
MsG0380016746.01.T01 AT5G64110 41.791 134 65 4 12 137 11 139 1.49e-23 94.0
MsG0380016746.01.T01 AT2G37130 36.752 117 71 2 24 139 26 140 6.29e-23 92.0
MsG0380016746.01.T01 AT2G43480 36.641 131 77 3 9 137 16 142 5.78e-22 89.7
MsG0380016746.01.T01 AT4G37520 40.870 115 65 2 26 137 25 139 1.15e-21 88.6
MsG0380016746.01.T01 AT4G37530 40.833 120 68 2 21 137 20 139 1.72e-21 87.4
MsG0380016746.01.T01 AT4G37520 41.441 111 62 2 26 133 25 135 1.81e-21 88.2
MsG0380016746.01.T01 AT3G17070 41.045 134 68 4 14 138 17 148 2.24e-21 88.2
MsG0380016746.01.T01 AT2G37130 37.273 110 66 2 31 139 2 109 2.72e-21 87.4
MsG0380016746.01.T01 AT4G37530 40.833 120 68 2 21 137 20 139 4.22e-21 87.0
MsG0380016746.01.T01 AT5G24070 40.708 113 61 3 27 137 34 142 5.87e-21 87.0
MsG0380016746.01.T01 AT4G30170 40.171 117 61 4 26 138 25 136 1.01e-17 78.2
MsG0380016746.01.T01 AT2G35380 65.217 46 16 0 90 135 4 49 1.31e-12 63.2

Find 36 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTATTTCTCCTCATAAT+AGG 0.184669 3:+87348657 MsG0380016746.01.T01:CDS
GTTAATCTAGAACAACTTAA+AGG 0.237686 3:-87348621 None:intergenic
AGTGAAACTTATTTGTTTAG+AGG 0.259691 3:+87348583 MsG0380016746.01.T01:five_prime_UTR
TTGGACAATGGAAGAGAGTT+TGG 0.300332 3:-87348727 None:intergenic
TTCTATTTCTCCTCATAATA+GGG 0.333578 3:+87348658 MsG0380016746.01.T01:CDS
TAGATTAACAATGTTCAGTT+TGG 0.377384 3:+87348635 MsG0380016746.01.T01:CDS
CCTCGAACAGAGTTCCTATT+CGG 0.377487 3:-87351334 None:intergenic
TGTTTAGAGGATTTAATCAA+TGG 0.420902 3:+87348596 MsG0380016746.01.T01:exon
CTCGAACAGAGTTCCTATTC+GGG 0.444608 3:-87351333 None:intergenic
TGGACAATGGAAGAGAGTTT+GGG 0.453796 3:-87348726 None:intergenic
AGAAGAACGCACTCCCGAAT+AGG 0.461469 3:+87351320 MsG0380016746.01.T01:CDS
TTGATATAGCGGATTGCACT+TGG 0.468796 3:-87348752 None:intergenic
TAGCGGATTGCACTTGGCGT+TGG 0.477054 3:-87348746 None:intergenic
AATTTGATGTGTCATCTAGT+AGG 0.477448 3:-87351288 None:intergenic
TCAGCACATGATACAACTCC+TGG 0.479117 3:-87351403 None:intergenic
CATTGGCACTCCCTATTATG+AGG 0.497408 3:-87348668 None:intergenic
AGCAATCGTGGAAGAACAAT+CGG 0.497821 3:-87348803 None:intergenic
TTGCAATTATAGGGGTGCGA+TGG 0.506694 3:+87351259 MsG0380016746.01.T01:intron
TGCAATTATAGGGGTGCGAT+GGG 0.518318 3:+87351260 MsG0380016746.01.T01:intron
TATATCAAAGGAGGCACGAA+TGG 0.526328 3:+87348767 MsG0380016746.01.T01:CDS
GTTTGTAGAGAGTTGTGCAT+TGG 0.533430 3:-87348685 None:intergenic
TTGCACTTGGCGTTGGACAA+TGG 0.534086 3:-87348739 None:intergenic
AACAGAGTCTGTGGCAGCAA+TGG 0.535017 3:-87351434 None:intergenic
CCGAATAGGAACTCTGTTCG+AGG 0.537065 3:+87351334 MsG0380016746.01.T01:CDS
GTTCTTGAGAAGAGAGGTGT+GGG 0.540115 3:-87348535 None:intergenic
ATATCAAAGGAGGCACGAAT+GGG 0.545501 3:+87348768 MsG0380016746.01.T01:CDS
TCGTGCCTCCTTTGATATAG+CGG 0.546698 3:-87348763 None:intergenic
TGTTCTTGAGAAGAGAGGTG+TGG 0.548915 3:-87348536 None:intergenic
TTCTTTGTTCTTGAGAAGAG+AGG 0.555331 3:-87348541 None:intergenic
GCCGTAGAGAACATATGTCC+AGG 0.557511 3:+87351385 MsG0380016746.01.T01:CDS
TCCTGGACATATGTTCTCTA+CGG 0.565428 3:-87351386 None:intergenic
AGTCTGTGGCAGCAATGGCT+AGG 0.583680 3:-87351429 None:intergenic
AGTGCAATCCGCTATATCAA+AGG 0.607186 3:+87348755 MsG0380016746.01.T01:CDS
TACAATTGCAACAGAGTCTG+TGG 0.617557 3:-87351443 None:intergenic
GCAATCCGCTATATCAAAGG+AGG 0.647372 3:+87348758 MsG0380016746.01.T01:CDS
TTACATTGACAAAGCAATCG+TGG 0.667907 3:-87348815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTTAATTTTTTTTT+TGG + Chr3:87350306-87350325 MsG0380016746.01.T01:intron 0.0%
!! AAAAAATTAAATTAACATGT+CGG + Chr3:87349403-87349422 MsG0380016746.01.T01:intron 10.0%
!! AATAAAAATATTGAGAATAA+TGG + Chr3:87351054-87351073 MsG0380016746.01.T01:intron 10.0%
!! GTTGAAATAATAAAAAATAT+AGG + Chr3:87349066-87349085 MsG0380016746.01.T01:intron 10.0%
!! TACTTAAATATAATTTAAAC+CGG + Chr3:87349348-87349367 MsG0380016746.01.T01:intron 10.0%
!!! TAGTTCATTTAATAAATTTT+AGG - Chr3:87349039-87349058 None:intergenic 10.0%
!! AACAATTATGAAAATTAACA+TGG + Chr3:87350264-87350283 MsG0380016746.01.T01:intron 15.0%
!! ATCATACATAAAATATTTAG+TGG + Chr3:87350955-87350974 MsG0380016746.01.T01:intron 15.0%
!! TTCTTTCAAAAAAAATTAAG+TGG - Chr3:87350466-87350485 None:intergenic 15.0%
!!! AATTGCTTTGAAAAAATATA+TGG - Chr3:87348875-87348894 None:intergenic 15.0%
!! AAAAAAAAACTTAATACCCA+TGG - Chr3:87349812-87349831 None:intergenic 20.0%
!! AACGTTAAATGAATATATAG+CGG + Chr3:87350646-87350665 MsG0380016746.01.T01:intron 20.0%
!! ACATTTCAAGATATTAACTT+CGG - Chr3:87350171-87350190 None:intergenic 20.0%
!! ATATACTTACTTGCAATTAT+AGG + Chr3:87351249-87351268 MsG0380016746.01.T01:intron 20.0%
!! ATGTATATGTGACTTAAAAT+TGG + Chr3:87350187-87350206 MsG0380016746.01.T01:intron 20.0%
!! GTAATATTATATACATAACC+CGG - Chr3:87348933-87348952 None:intergenic 20.0%
!! TAGTAATAGTAAGAGTTATA+GGG + Chr3:87349747-87349766 MsG0380016746.01.T01:intron 20.0%
!! TATACTTACTTGCAATTATA+GGG + Chr3:87351250-87351269 MsG0380016746.01.T01:intron 20.0%
!! TTATCTTGAACATCTTAATT+AGG - Chr3:87350108-87350127 None:intergenic 20.0%
!! TTGATACTAGTATATTTGTT+CGG + Chr3:87348901-87348920 MsG0380016746.01.T01:intron 20.0%
!!! TACATAAAAAAAGTGTTAGT+AGG + Chr3:87350004-87350023 MsG0380016746.01.T01:intron 20.0%
!!! TACTAGCTATTTTTTTTGAA+AGG - Chr3:87349732-87349751 None:intergenic 20.0%
!!! TTACTACTATTGATTTAAAG+CGG + Chr3:87351117-87351136 MsG0380016746.01.T01:intron 20.0%
!!! TTTTTATCTTCATTAAACTC+CGG - Chr3:87349370-87349389 None:intergenic 20.0%
! AAGAATTTCATCTCGTATTT+AGG - Chr3:87351186-87351205 None:intergenic 25.0%
! AGTGAAACTTATTTGTTTAG+AGG + Chr3:87348583-87348602 MsG0380016746.01.T01:five_prime_UTR 25.0%
! AGTTCAAAGAAGATTTACAA+AGG + Chr3:87349182-87349201 MsG0380016746.01.T01:intron 25.0%
! ATACTTACTTGCAATTATAG+GGG + Chr3:87351251-87351270 MsG0380016746.01.T01:intron 25.0%
! ATGTGATAACATCTTTGATA+TGG - Chr3:87349222-87349241 None:intergenic 25.0%
! CTAGTAATAGTAAGAGTTAT+AGG + Chr3:87349746-87349765 MsG0380016746.01.T01:intron 25.0%
! TAATAGACAATTGTCAATGA+TGG - Chr3:87349309-87349328 None:intergenic 25.0%
! TAGATTAACAATGTTCAGTT+TGG + Chr3:87348635-87348654 MsG0380016746.01.T01:CDS 25.0%
! TCAAACCCTATTAAAACATT+TGG + Chr3:87350143-87350162 MsG0380016746.01.T01:intron 25.0%
! TGTGATAACATCTTTGATAT+GGG - Chr3:87349221-87349240 None:intergenic 25.0%
! TGTTTAGAGGATTTAATCAA+TGG + Chr3:87348596-87348615 MsG0380016746.01.T01:exon 25.0%
!! AAAAAAAAGCATGATATGCA+AGG + Chr3:87349776-87349795 MsG0380016746.01.T01:intron 25.0%
!! AGAAATGCTACTTAATGAAA+TGG + Chr3:87350482-87350501 MsG0380016746.01.T01:intron 25.0%
!! GTTAATCTAGAACAACTTAA+AGG - Chr3:87348624-87348643 None:intergenic 25.0%
!! TTCTATTTCTCCTCATAATA+GGG + Chr3:87348658-87348677 MsG0380016746.01.T01:CDS 25.0%
AAAAAACTTAATACCCATGG+TGG - Chr3:87349809-87349828 None:intergenic 30.0%
AAAAACTTAATACCCATGGT+GGG - Chr3:87349808-87349827 None:intergenic 30.0%
AAATCATCATAGGGATAAAG+TGG + Chr3:87349838-87349857 MsG0380016746.01.T01:intron 30.0%
AATTTCATCTCGTATTTAGG+TGG - Chr3:87351183-87351202 None:intergenic 30.0%
AATTTGATGTGTCATCTAGT+AGG - Chr3:87351291-87351310 None:intergenic 30.0%
ACATAACATTGTTGCATTCA+TGG - Chr3:87349603-87349622 None:intergenic 30.0%
ATTGAGAATAATGGTGAAAG+TGG + Chr3:87351063-87351082 MsG0380016746.01.T01:intron 30.0%
GTAGTAACACATACAAAGTA+AGG - Chr3:87351104-87351123 None:intergenic 30.0%
GTTTAATCATTATGCTTCCT+AGG - Chr3:87351225-87351244 None:intergenic 30.0%
TAGAAATTAATCTCTCGAAC+CGG - Chr3:87349663-87349682 None:intergenic 30.0%
TCAAATCTTCTTGAAGACAA+TGG - Chr3:87351153-87351172 None:intergenic 30.0%
TTTATCCCTATGATGATTTG+TGG - Chr3:87349837-87349856 None:intergenic 30.0%
! GATGACACATCAAATTTTAC+TGG + Chr3:87351295-87351314 MsG0380016746.01.T01:CDS 30.0%
! GTTCTATTTCTCCTCATAAT+AGG + Chr3:87348657-87348676 MsG0380016746.01.T01:CDS 30.0%
! TTATCCCTATGATGATTTGT+GGG - Chr3:87349836-87349855 None:intergenic 30.0%
AAAACGTTGAAGTGAACTCT+GGG + Chr3:87349133-87349152 MsG0380016746.01.T01:intron 35.0%
AGAAATTAATCTCTCGAACC+GGG - Chr3:87349662-87349681 None:intergenic 35.0%
GAAATTAGTGACACATGTGA+AGG - Chr3:87348842-87348861 None:intergenic 35.0%
GAGAACTTTGCCAAACATTA+TGG + Chr3:87349631-87349650 MsG0380016746.01.T01:intron 35.0%
GAGAGATTAATTTCTACCGT+CGG + Chr3:87349667-87349686 MsG0380016746.01.T01:intron 35.0%
GATAACATCTTTGATATGGG+TGG - Chr3:87349218-87349237 None:intergenic 35.0%
TTACATTGACAAAGCAATCG+TGG - Chr3:87348818-87348837 None:intergenic 35.0%
TTCTTTGTTCTTGAGAAGAG+AGG - Chr3:87348544-87348563 None:intergenic 35.0%
TTTCCCCACAAATCATCATA+GGG + Chr3:87349829-87349848 MsG0380016746.01.T01:intron 35.0%
! TATCCCTATGATGATTTGTG+GGG - Chr3:87349835-87349854 None:intergenic 35.0%
! TTTTCCCCACAAATCATCAT+AGG + Chr3:87349828-87349847 MsG0380016746.01.T01:intron 35.0%
!! TATATTTGTTCGGTGTTGTC+CGG + Chr3:87348911-87348930 MsG0380016746.01.T01:intron 35.0%
!! TGTTACTTTAGTTGATGCCT+AGG + Chr3:87351205-87351224 MsG0380016746.01.T01:intron 35.0%
!!! CGGAGCCAAATGTTTTAATA+GGG - Chr3:87350151-87350170 None:intergenic 35.0%
!!! TCGGAGCCAAATGTTTTAAT+AGG - Chr3:87350152-87350171 None:intergenic 35.0%
AGCAATCGTGGAAGAACAAT+CGG - Chr3:87348806-87348825 None:intergenic 40.0%
AGTGCAATCCGCTATATCAA+AGG + Chr3:87348755-87348774 MsG0380016746.01.T01:CDS 40.0%
ATCCAATAACCCATCACTTC+TGG - Chr3:87349568-87349587 None:intergenic 40.0%
CAAAACGTTGAAGTGAACTC+TGG + Chr3:87349132-87349151 MsG0380016746.01.T01:intron 40.0%
CAAGCTTAACCAGAAGTGAT+GGG + Chr3:87349556-87349575 MsG0380016746.01.T01:intron 40.0%
CATTGTTGCATTCATGGAGT+TGG - Chr3:87349597-87349616 None:intergenic 40.0%
GTTTGTAGAGAGTTGTGCAT+TGG - Chr3:87348688-87348707 None:intergenic 40.0%
TACAATTGCAACAGAGTCTG+TGG - Chr3:87351446-87351465 None:intergenic 40.0%
TCAAGCTTAACCAGAAGTGA+TGG + Chr3:87349555-87349574 MsG0380016746.01.T01:intron 40.0%
TCCTGGACATATGTTCTCTA+CGG - Chr3:87351389-87351408 None:intergenic 40.0%
TGGACAATGGAAGAGAGTTT+GGG - Chr3:87348729-87348748 None:intergenic 40.0%
TGTTATCACATCGACGACAA+CGG + Chr3:87349231-87349250 MsG0380016746.01.T01:intron 40.0%
TTGGACAATGGAAGAGAGTT+TGG - Chr3:87348730-87348749 None:intergenic 40.0%
! ATATCAAAGGAGGCACGAAT+GGG + Chr3:87348768-87348787 MsG0380016746.01.T01:CDS 40.0%
! TATATCAAAGGAGGCACGAA+TGG + Chr3:87348767-87348786 MsG0380016746.01.T01:CDS 40.0%
!! AACCAGAAGTGATGGGTTAT+TGG + Chr3:87349563-87349582 MsG0380016746.01.T01:intron 40.0%
!! ACTCAAAAGCACTAGGATGA+TGG + Chr3:87349520-87349539 MsG0380016746.01.T01:intron 40.0%
!! ACTTGTCACTCAAAAGCACT+AGG + Chr3:87349513-87349532 MsG0380016746.01.T01:intron 40.0%
!! ATATTTGTTCGGTGTTGTCC+GGG + Chr3:87348912-87348931 MsG0380016746.01.T01:intron 40.0%
!! TTGATATAGCGGATTGCACT+TGG - Chr3:87348755-87348774 None:intergenic 40.0%
ATTAATCTCTCGAACCGGGT+AGG - Chr3:87349658-87349677 None:intergenic 45.0%
ATTTCTACCGTCGGATGTAG+AGG + Chr3:87349676-87349695 MsG0380016746.01.T01:intron 45.0%
CATTGGCACTCCCTATTATG+AGG - Chr3:87348671-87348690 None:intergenic 45.0%
CCAAACATTATGGTCCTACC+CGG + Chr3:87349641-87349660 MsG0380016746.01.T01:intron 45.0%
CCTCGAACAGAGTTCCTATT+CGG - Chr3:87351337-87351356 None:intergenic 45.0%
CTCGAACAGAGTTCCTATTC+GGG - Chr3:87351336-87351355 None:intergenic 45.0%
GCAAGGATAAAACCCACCAT+GGG + Chr3:87349793-87349812 MsG0380016746.01.T01:intron 45.0%
GCAATCCGCTATATCAAAGG+AGG + Chr3:87348758-87348777 MsG0380016746.01.T01:CDS 45.0%
TCAGCACATGATACAACTCC+TGG - Chr3:87351406-87351425 None:intergenic 45.0%
TCGTGCCTCCTTTGATATAG+CGG - Chr3:87348766-87348785 None:intergenic 45.0%
TGCAAGGATAAAACCCACCA+TGG + Chr3:87349792-87349811 MsG0380016746.01.T01:intron 45.0%
! TGCAATTATAGGGGTGCGAT+GGG + Chr3:87351260-87351279 MsG0380016746.01.T01:intron 45.0%
! TTGCAATTATAGGGGTGCGA+TGG + Chr3:87351259-87351278 MsG0380016746.01.T01:intron 45.0%
!! AAAATTAAACTTAAATAAAA+TGG + Chr3:87350769-87350788 MsG0380016746.01.T01:intron 5.0%
!! AAATTAAACTTAAATAAAAT+GGG + Chr3:87350770-87350789 MsG0380016746.01.T01:intron 5.0%
!!! AAAAGTATAAATTAAAAATA+TGG + Chr3:87350395-87350414 MsG0380016746.01.T01:intron 5.0%
AACAGAGTCTGTGGCAGCAA+TGG - Chr3:87351437-87351456 None:intergenic 50.0%
ACTTGAAGCTTGCCCTGATC+TGG - Chr3:87349165-87349184 None:intergenic 50.0%
AGAAGAACGCACTCCCGAAT+AGG + Chr3:87351320-87351339 MsG0380016746.01.T01:CDS 50.0%
CCGAATAGGAACTCTGTTCG+AGG + Chr3:87351334-87351353 MsG0380016746.01.T01:CDS 50.0%
CCGGGTAGGACCATAATGTT+TGG - Chr3:87349644-87349663 None:intergenic 50.0%
CGAATGTCCTCTACATCCGA+CGG - Chr3:87349686-87349705 None:intergenic 50.0%
GCCGTAGAGAACATATGTCC+AGG + Chr3:87351385-87351404 MsG0380016746.01.T01:CDS 50.0%
! TTGCACTTGGCGTTGGACAA+TGG - Chr3:87348742-87348761 None:intergenic 50.0%
AGTCTGTGGCAGCAATGGCT+AGG - Chr3:87351432-87351451 None:intergenic 55.0%
TCTGGGTGCTCACCAGATCA+GGG + Chr3:87349150-87349169 MsG0380016746.01.T01:intron 55.0%
!! TAGCGGATTGCACTTGGCGT+TGG - Chr3:87348749-87348768 None:intergenic 55.0%
CTCTGGGTGCTCACCAGATC+AGG + Chr3:87349149-87349168 MsG0380016746.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87348538 87351477 87348538 ID=MsG0380016746.01;Name=MsG0380016746.01
Chr3 mRNA 87348538 87351477 87348538 ID=MsG0380016746.01.T01;Parent=MsG0380016746.01;Name=MsG0380016746.01.T01;_AED=0.48;_eAED=0.49;_QI=77|1|0.5|1|1|1|2|0|141
Chr3 exon 87348538 87348833 87348538 ID=MsG0380016746.01.T01:exon:22489;Parent=MsG0380016746.01.T01
Chr3 exon 87351271 87351477 87351271 ID=MsG0380016746.01.T01:exon:22490;Parent=MsG0380016746.01.T01
Chr3 five_prime_UTR 87348538 87348614 87348538 ID=MsG0380016746.01.T01:five_prime_utr;Parent=MsG0380016746.01.T01
Chr3 CDS 87348615 87348833 87348615 ID=MsG0380016746.01.T01:cds;Parent=MsG0380016746.01.T01
Chr3 CDS 87351271 87351477 87351271 ID=MsG0380016746.01.T01:cds;Parent=MsG0380016746.01.T01
Gene Sequence

>MsG0380016746.01.T01

ATGGCTCCTTTAAGTTGTTCTAGATTAACAATGTTCAGTTTGGTTCTATTTCTCCTCATAATAGGGAGTGCCAATGCACAACTCTCTACAAACTTTTACTCAAAAACTTGTCCCAAACTCTCTTCCATTGTCCAACGCCAAGTGCAATCCGCTATATCAAAGGAGGCACGAATGGGTGCTTCTATTCTCCGATTGTTCTTCCACGATTGCTTTGTCAATGGGTGCGATGGGTCAATCCTACTAGATGACACATCAAATTTTACTGGAGAGAAGAACGCACTCCCGAATAGGAACTCTGTTCGAGGATTCGATGTCATTGACAACATAAAGACAGCCGTAGAGAACATATGTCCAGGAGTTGTATCATGTGCTGATATCCTAGCCATTGCTGCCACAGACTCTGTTGCAATTGTAAGTATATTGTAG

Protein sequence

>MsG0380016746.01.T01

MAPLSCSRLTMFSLVLFLLIIGSANAQLSTNFYSKTCPKLSSIVQRQVQSAISKEARMGASILRLFFHDCFVNGCDGSILLDDTSNFTGEKNALPNRNSVRGFDVIDNIKTAVENICPGVVSCADILAIAATDSVAIVSIL*