AlfalfaGEDB | MsG0380016746.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016746.01

KEGG: K00430
GO: GO:0004601 GO:0006979 GO:0020037 GO:0055114
PFAM: PF00141

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016746.01.T01	AFK42735.1	94.928	138	7	0	1	138	1	138	1.32E-90	271

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016746.01.T01	A7NY33	68.462	130	41	0	9	138	8	137	1.56E-60	192

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016746.01.T01	I3SR43	94.928	138	7	0	1	138	1	138	6.30e-91	271

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280010523.01	MsG0380016746.01	0.803708	3.064108e-49	1.550443e-46
MsG0280011169.01	MsG0380016746.01	0.802764	4.805327e-49	2.373630e-46
MsG0380014794.01	MsG0380016746.01	0.842471	2.534430e-58	3.847018e-55
MsG0380016746.01	MsG0380017056.01	0.802487	5.480841e-49	2.688090e-46
MsG0380016746.01	MsG0480020433.01	0.804260	2.352884e-49	1.207565e-46
MsG0380016746.01	MsG0480021788.01	0.814444	1.535577e-51	1.030548e-48
MsG0380016746.01	MsG0480021789.01	0.813869	2.056835e-51	1.359007e-48
MsG0380016746.01	MsG0480021892.01	0.828613	8.155784e-55	8.148072e-52
MsG0380016746.01	MsG0480023998.01	0.809871	1.527104e-50	9.069616e-48
MsG0380016746.01	MsG0580024768.01	0.800937	1.140082e-48	5.376367e-46

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016746.01.T01	MTR_3g094650	94.928	138	7	0	1	138	1	138	2.02e-92	270
MsG0380016746.01.T01	MTR_3g094630	87.681	138	17	0	1	138	1	138	5.17e-77	231
MsG0380016746.01.T01	MTR_3g094670	87.681	138	17	0	1	138	1	138	4.71e-76	229
MsG0380016746.01.T01	MTR_5g083860	72.441	127	34	1	12	138	16	141	7.36e-60	187
MsG0380016746.01.T01	MTR_3g466200	66.667	129	43	0	10	138	7	135	2.43e-57	181
MsG0380016746.01.T01	MTR_2g084020	66.667	126	42	0	13	138	10	135	8.04e-56	177
MsG0380016746.01.T01	MTR_2g084110	66.667	126	42	0	13	138	10	135	1.11e-55	177
MsG0380016746.01.T01	MTR_2g084010	65.873	126	43	0	13	138	10	135	8.51e-55	174
MsG0380016746.01.T01	MTR_2g084080	68.033	122	39	0	14	135	11	132	7.69e-54	172
MsG0380016746.01.T01	MTR_2g084090	65.625	128	44	0	11	138	8	135	8.42e-54	172

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016746.01.T01	AT5G05340	80.909	110	21	0	26	135	28	137	2.49e-60	189
MsG0380016746.01.T01	AT5G58400	64.062	128	45	1	12	138	13	140	2.11e-53	171
MsG0380016746.01.T01	AT5G06720	56.296	135	58	1	5	138	8	142	1.39e-49	161
MsG0380016746.01.T01	AT5G06730	54.074	135	61	1	5	138	9	143	6.90e-48	158
MsG0380016746.01.T01	AT5G58390	59.200	125	51	0	14	138	7	131	7.26e-46	151
MsG0380016746.01.T01	AT1G49570	56.637	113	49	0	26	138	46	158	2.97e-43	145
MsG0380016746.01.T01	AT5G19890	57.364	129	49	2	9	137	14	136	5.74e-43	144
MsG0380016746.01.T01	AT4G08780	57.895	114	48	0	24	137	20	133	7.64e-42	142
MsG0380016746.01.T01	AT4G08770	58.261	115	48	0	24	138	20	134	8.87e-42	142
MsG0380016746.01.T01	AT2G22420	52.672	131	62	0	7	137	2	132	1.89e-41	140

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

Find 36 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAGTCTGTGGCAGCAA+TGG	0.535017	3:-87351434	None:intergenic
AATTTGATGTGTCATCTAGT+AGG	0.477448	3:-87351288	None:intergenic
AGAAGAACGCACTCCCGAAT+AGG	0.461469	3:+87351320	MsG0380016746.01.T01:CDS
AGCAATCGTGGAAGAACAAT+CGG	0.497821	3:-87348803	None:intergenic
AGTCTGTGGCAGCAATGGCT+AGG	0.583680	3:-87351429	None:intergenic
AGTGAAACTTATTTGTTTAG+AGG	0.259691	3:+87348583	MsG0380016746.01.T01:five_prime_UTR
AGTGCAATCCGCTATATCAA+AGG	0.607186	3:+87348755	MsG0380016746.01.T01:CDS
ATATCAAAGGAGGCACGAAT+GGG	0.545501	3:+87348768	MsG0380016746.01.T01:CDS
CATTGGCACTCCCTATTATG+AGG	0.497408	3:-87348668	None:intergenic
CCGAATAGGAACTCTGTTCG+AGG	0.537065	3:+87351334	MsG0380016746.01.T01:CDS

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTTAATACCCATGG+TGG	-	Chr3:87349809-87349828	None:intergenic	30.0%
AAAAACTTAATACCCATGGT+GGG	-	Chr3:87349808-87349827	None:intergenic	30.0%
AAATCATCATAGGGATAAAG+TGG	+	Chr3:87349838-87349857	MsG0380016746.01.T01:intron	30.0%
AATTTCATCTCGTATTTAGG+TGG	-	Chr3:87351183-87351202	None:intergenic	30.0%
AATTTGATGTGTCATCTAGT+AGG	-	Chr3:87351291-87351310	None:intergenic	30.0%
ACATAACATTGTTGCATTCA+TGG	-	Chr3:87349603-87349622	None:intergenic	30.0%
ATTGAGAATAATGGTGAAAG+TGG	+	Chr3:87351063-87351082	MsG0380016746.01.T01:intron	30.0%
GTAGTAACACATACAAAGTA+AGG	-	Chr3:87351104-87351123	None:intergenic	30.0%
GTTTAATCATTATGCTTCCT+AGG	-	Chr3:87351225-87351244	None:intergenic	30.0%
TAGAAATTAATCTCTCGAAC+CGG	-	Chr3:87349663-87349682	None:intergenic	30.0%

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	87348538	87351477	87348538	ID=MsG0380016746.01;Name=MsG0380016746.01
Chr3	mRNA	87348538	87351477	87348538	ID=MsG0380016746.01.T01;Parent=MsG0380016746.01;Name=MsG0380016746.01.T01;_AED=0.48;_eAED=0.49;_QI=77\|1\|0.5\|1\|1\|1\|2\|0\|141
Chr3	exon	87348538	87348833	87348538	ID=MsG0380016746.01.T01:exon:22489;Parent=MsG0380016746.01.T01
Chr3	exon	87351271	87351477	87351271	ID=MsG0380016746.01.T01:exon:22490;Parent=MsG0380016746.01.T01
Chr3	five_prime_UTR	87348538	87348614	87348538	ID=MsG0380016746.01.T01:five_prime_utr;Parent=MsG0380016746.01.T01
Chr3	CDS	87348615	87348833	87348615	ID=MsG0380016746.01.T01:cds;Parent=MsG0380016746.01.T01
Chr3	CDS	87351271	87351477	87351271	ID=MsG0380016746.01.T01:cds;Parent=MsG0380016746.01.T01

Gene Sequence

>MsG0380016746.01.T01

ATGGCTCCTTTAAGTTGTTCTAGATTAACAATGTTCAGTTTGGTTCTATTTCTCCTCATAATAGGGAGTGCCAATGCACAACTCTCTACAAACTTTTACTCAAAAACTTGTCCCAAACTCTCTTCCATTGTCCAACGCCAAGTGCAATCCGCTATATCAAAGGAGGCACGAATGGGTGCTTCTATTCTCCGATTGTTCTTCCACGATTGCTTTGTCAATGGGTGCGATGGGTCAATCCTACTAGATGACACATCAAATTTTACTGGAGAGAAGAACGCACTCCCGAATAGGAACTCTGTTCGAGGATTCGATGTCATTGACAACATAAAGACAGCCGTAGAGAACATATGTCCAGGAGTTGTATCATGTGCTGATATCCTAGCCATTGCTGCCACAGACTCTGTTGCAATTGTAAGTATATTGTAG

Protein sequence

>MsG0380016746.01.T01

MAPLSCSRLTMFSLVLFLLIIGSANAQLSTNFYSKTCPKLSSIVQRQVQSAISKEARMGASILRLFFHDCFVNGCDGSILLDDTSNFTGEKNALPNRNSVRGFDVIDNIKTAVENICPGVVSCADILAIAATDSVAIVSIL*