AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021892.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021892.01.T01 MTR_4g078390 89.809 471 8 2 1 432 1 470 0.0 847
MsG0480021892.01.T01 MTR_4g078390 88.308 402 7 2 70 432 1 401 0.0 704
MsG0480021892.01.T01 MTR_4g078600 73.053 475 85 3 1 432 1 475 0.0 701
MsG0480021892.01.T01 MTR_4g478280 73.233 467 82 3 1 424 1 467 0.0 697
MsG0480021892.01.T01 MTR_4g478260 73.233 467 82 3 1 424 9 475 0.0 684
MsG0480021892.01.T01 MTR_4g478220 73.019 467 83 3 1 424 1 467 0.0 674
MsG0480021892.01.T01 MTR_4g078390 83.163 392 26 2 1 353 1 391 0.0 645
MsG0480021892.01.T01 MTR_4g078417 64.901 453 113 4 1 411 1 449 0.0 590
MsG0480021892.01.T01 MTR_4g078480 63.080 474 125 6 1 432 1 466 0.0 587
MsG0480021892.01.T01 MTR_4g078440 63.739 444 112 5 24 425 3 439 0.0 565
MsG0480021892.01.T01 MTR_4g078413 60.043 468 140 5 1 425 1 464 0.0 560
MsG0480021892.01.T01 MTR_4g078390 79.876 323 25 2 70 353 1 322 2.62e-179 503
MsG0480021892.01.T01 MTR_7g009960 52.268 463 175 5 6 425 7 466 7.01e-175 498
MsG0480021892.01.T01 MTR_7g009960 52.644 416 151 5 6 378 7 419 6.66e-155 445
MsG0480021892.01.T01 MTR_0024s0170 50.323 465 178 8 11 426 11 471 3.72e-153 443
MsG0480021892.01.T01 MTR_7g078060 45.455 473 212 6 2 432 3 471 4.75e-142 414
MsG0480021892.01.T01 MTR_0024s0190 49.257 404 159 6 67 426 5 406 1.12e-140 408
MsG0480021892.01.T01 MTR_7g078060 45.383 379 164 4 96 432 2 379 2.57e-111 333
MsG0480021892.01.T01 MTR_4g078460 56.420 257 69 3 1 218 1 253 2.53e-85 278
MsG0480021892.01.T01 MTR_4g078460 56.420 257 69 3 1 218 1 253 6.18e-84 279
MsG0480021892.01.T01 MTR_5g004770 28.947 418 252 9 7 415 4 385 1.40e-50 176
MsG0480021892.01.T01 MTR_1g008160 27.640 445 254 9 10 395 10 445 1.76e-49 175
MsG0480021892.01.T01 MTR_1g008160 27.804 428 241 9 10 378 10 428 1.37e-47 169
MsG0480021892.01.T01 MTR_1g008160 27.506 389 216 7 66 395 20 401 9.11e-44 159
MsG0480021892.01.T01 MTR_2055s0010 75.824 91 22 0 333 423 1 91 9.30e-44 148
MsG0480021892.01.T01 MTR_1g008160 27.688 372 203 7 66 378 20 384 9.14e-42 152
MsG0480021892.01.T01 MTR_1g008160 28.938 273 140 7 10 237 10 273 3.54e-27 110
MsG0480021892.01.T01 MTR_1g008160 27.155 232 155 2 178 395 60 291 3.89e-23 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021892.01.T01 AT3G49190 28.761 452 255 8 6 395 14 460 3.62e-54 189
MsG0480021892.01.T01 AT5G53390 29.167 432 246 7 10 387 15 440 2.96e-52 182
MsG0480021892.01.T01 AT1G72110 28.733 442 253 10 7 395 9 441 4.15e-49 174
MsG0480021892.01.T01 AT3G49210 26.380 489 283 9 10 424 26 511 4.36e-47 169
MsG0480021892.01.T01 AT3G49200 26.211 454 260 10 10 395 26 472 9.79e-47 168
MsG0480021892.01.T01 AT1G72110 27.828 442 248 11 7 395 9 432 2.51e-45 164
MsG0480021892.01.T01 AT5G22490 27.463 477 269 14 11 424 12 474 2.81e-44 161
MsG0480021892.01.T01 AT5G12420 26.096 456 261 10 4 395 3 446 4.59e-43 158
MsG0480021892.01.T01 AT2G38995 26.882 465 284 8 10 424 21 479 1.07e-42 157
MsG0480021892.01.T01 AT5G16350 26.531 441 259 11 5 395 3 428 2.39e-41 153
MsG0480021892.01.T01 AT5G12420 26.168 428 240 10 4 367 3 418 2.83e-41 152
MsG0480021892.01.T01 AT5G37300 27.885 416 245 9 56 421 60 470 1.54e-39 148
MsG0480021892.01.T01 AT5G37300 27.885 416 245 9 56 421 78 488 2.68e-39 148
MsG0480021892.01.T01 AT5G16350 26.419 458 258 13 5 395 3 448 3.75e-39 147
MsG0480021892.01.T01 AT5G53380 25.607 453 262 9 6 395 4 444 1.11e-37 143
MsG0480021892.01.T01 AT2G38995 26.895 409 244 7 66 424 7 410 2.34e-37 141
MsG0480021892.01.T01 AT2G38995 26.954 371 216 6 66 388 7 370 4.66e-35 134
MsG0480021892.01.T01 AT3G49210 26.247 381 205 8 10 317 26 403 1.22e-33 131
MsG0480021892.01.T01 AT5G22490 28.032 371 190 14 11 318 12 368 1.06e-32 127
MsG0480021892.01.T01 AT5G16350 26.768 396 211 13 5 333 3 386 3.23e-31 124
MsG0480021892.01.T01 AT5G37300 26.994 326 186 6 56 333 78 399 1.62e-28 116
MsG0480021892.01.T01 AT5G37300 38.655 119 67 2 56 172 78 192 1.07e-18 87.4
MsG0480021892.01.T01 AT2G38995 27.397 219 147 4 217 424 72 289 8.17e-17 81.3
MsG0480021892.01.T01 AT2G43255 26.961 204 140 4 229 424 8 210 3.23e-15 74.7
MsG0480021892.01.T01 AT2G43255 27.094 203 140 4 229 424 8 209 7.73e-15 73.6

Find 94 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATAAAATCCATTTAT+TGG 0.159390 4:-65650649 None:intergenic
TTGGCAAATCATCCAATAAA+TGG 0.194262 4:+65650637 MsG0480021892.01.T01:CDS
AATTTAGAGATGAAATTAAA+AGG 0.219948 4:+65650311 MsG0480021892.01.T01:CDS
GATGATGAGTTTGTGGTTTC+AGG 0.231862 4:-65649040 None:intergenic
TTGATTTCCCCAAAGACTTT+TGG 0.251445 4:-65650159 None:intergenic
CTTAGTGGGGTGATCTTCTA+TGG 0.253842 4:+65650011 MsG0480021892.01.T01:CDS
CAGACCCTCTTGAGTTTGTT+TGG 0.260303 4:+65650222 MsG0480021892.01.T01:CDS
GAGGAGAAACGTGGATTGAT+AGG 0.276195 4:-65648787 None:intergenic
TCCACGTTTCTCCTCTATTA+TGG 0.279430 4:+65648795 MsG0480021892.01.T01:CDS
AACCAGAGTCCAAAAGTCTT+TGG 0.299068 4:+65650150 MsG0480021892.01.T01:CDS
GATATGTTTGACAAAGTAAA+AGG 0.308704 4:-65649474 None:intergenic
TTTGCATTTCTTTCAATGAT+TGG 0.328080 4:-65650127 None:intergenic
TTTGTGGTTTCAGGAAATTT+AGG 0.332994 4:-65649031 None:intergenic
ACCAGAGTCCAAAAGTCTTT+GGG 0.339545 4:+65650151 MsG0480021892.01.T01:CDS
GAATCTAATTGTGGTCTTGA+AGG 0.368439 4:-65649295 None:intergenic
TCTTTCAGTGTTTATCTCAT+AGG 0.378679 4:+65650278 MsG0480021892.01.T01:CDS
GGTAGGACCAGTAGAGAAAA+TGG 0.383076 4:+65650612 MsG0480021892.01.T01:CDS
GTTCCTTCAGCATTGCTTGT+TGG 0.387997 4:-65649166 None:intergenic
CAAACTCAAGAGGGTCTGAT+TGG 0.400736 4:-65650217 None:intergenic
ACCTCAAGATAAACCCCTTT+GGG 0.402020 4:+65649123 MsG0480021892.01.T01:CDS
CACACCACACCACAGCATAA+TGG 0.410159 4:+65648612 MsG0480021892.01.T01:exon
GGTCTTGAAGGAAAAGATAA+AGG 0.413442 4:-65649283 None:intergenic
TTCAATTGATGATGAGTTTG+TGG 0.421310 4:-65649047 None:intergenic
ATTTAGAGATGAAATTAAAA+GGG 0.434063 4:+65650312 MsG0480021892.01.T01:CDS
ATAGTTTGTGAGTCATCAAT+TGG 0.440939 4:-65648739 None:intergenic
AATCAAATGTATTTCCCAAA+GGG 0.445055 4:-65649137 None:intergenic
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4:+65649216 MsG0480021892.01.T01:CDS
GGAAAAGATAAAGGAAGAGA+AGG 0.447318 4:-65649274 None:intergenic
ACCAGTAGAGAAAATGGCTT+TGG 0.450925 4:+65650618 MsG0480021892.01.T01:CDS
GATTGGCTTAACTTAGGTAT+AGG 0.451225 4:-65650200 None:intergenic
CACCTCAAGATAAACCCCTT+TGG 0.455067 4:+65649122 MsG0480021892.01.T01:CDS
TAGCTTAAATGTCTCGCGGC+TGG 0.473660 4:+65651210 MsG0480021892.01.T01:three_prime_UTR
AAAATAATCTATAACACAAT+GGG 0.475550 4:+65650562 MsG0480021892.01.T01:CDS
GAGATGTAAAACCATAATAG+AGG 0.481749 4:-65648806 None:intergenic
AGGAGAAACGTGGATTGATA+GGG 0.481798 4:-65648786 None:intergenic
CTATAAACGATGTGCTTAGT+GGG 0.482677 4:+65649997 MsG0480021892.01.T01:CDS
GGGTCTGATTGGCTTAACTT+AGG 0.483227 4:-65650206 None:intergenic
CAAAGCAGCTATGGAGATCT+CGG 0.484745 4:+65651031 MsG0480021892.01.T01:CDS
AAGCTCGTAAGTTGATCAAA+AGG 0.488960 4:+65650246 MsG0480021892.01.T01:CDS
ACTATAAACGATGTGCTTAG+TGG 0.492582 4:+65649996 MsG0480021892.01.T01:CDS
GGGTGATCTTCTATGGGATT+AGG 0.493169 4:+65650018 MsG0480021892.01.T01:CDS
AATCACATTGAGAACATTGA+AGG 0.494025 4:+65650950 MsG0480021892.01.T01:CDS
TCCCAAAGGGGTTTATCTTG+AGG 0.499840 4:-65649124 None:intergenic
TTCAAACTTCACCATGCACT+TGG 0.505787 4:+65649196 MsG0480021892.01.T01:CDS
CTCAACACAAGAAATATTGA+AGG 0.507495 4:+65650101 MsG0480021892.01.T01:CDS
ATGAAAATCTGATTAAGATC+CGG 0.509004 4:-65651187 None:intergenic
AAAGAGATCAAATCAAAGCT+TGG 0.509039 4:+65649516 MsG0480021892.01.T01:CDS
CCTATAAGGTCAGGATATGA+AGG 0.510705 4:+65649438 MsG0480021892.01.T01:intron
TTAGTGGGGTGATCTTCTAT+GGG 0.511263 4:+65650012 MsG0480021892.01.T01:CDS
CTATGGGATTAGGCTATACA+TGG 0.512779 4:+65650028 MsG0480021892.01.T01:CDS
AAGTGTTGTTATCTCTAACT+TGG 0.521473 4:+65650591 MsG0480021892.01.T01:CDS
AGAAACGTGGATTGATAGGG+AGG 0.521664 4:-65648783 None:intergenic
GAAAAGATAAAGGAAGAGAA+GGG 0.522817 4:-65649273 None:intergenic
AAGAAAATATATATAAATGA+AGG 0.522872 4:+65651152 MsG0480021892.01.T01:three_prime_UTR
ATATAAATAAATATAAATGA+AGG 0.533302 4:+65651114 MsG0480021892.01.T01:three_prime_UTR
TATTGTCCATGAGGACTCAC+TGG 0.534626 4:-65648661 None:intergenic
CTTCACCATGCACTTGGTGA+TGG 0.544042 4:+65649202 MsG0480021892.01.T01:CDS
TAATCAAATGTATTTCCCAA+AGG 0.546228 4:-65649138 None:intergenic
TGCTGTGGTGTGGTGTGGTG+TGG 0.546276 4:-65648606 None:intergenic
ATCACATTGAGAACATTGAA+GGG 0.548950 4:+65650951 MsG0480021892.01.T01:CDS
GTTGTTATCTCTAACTTGGT+AGG 0.550431 4:+65650595 MsG0480021892.01.T01:CDS
CATGAGCCAGTGAGTCCTCA+TGG 0.553430 4:+65648655 MsG0480021892.01.T01:CDS
TAAAATAATCTATAACACAA+TGG 0.553998 4:+65650561 MsG0480021892.01.T01:CDS
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4:+65649217 MsG0480021892.01.T01:CDS
TACCTCAGGTCCACCTGTCA+TGG 0.569963 4:-65650671 None:intergenic
CGGTAAAATGAGATGGCAAA+GGG 0.575423 4:+65648976 MsG0480021892.01.T01:CDS
AGTCATATTCAAAGCAGCTA+TGG 0.581603 4:+65651022 MsG0480021892.01.T01:CDS
GATGAAATTAAAAGGGTCTG+AGG 0.583143 4:+65650319 MsG0480021892.01.T01:CDS
ATGAAGGTATGACTATCTAC+CGG 0.594936 4:+65651168 MsG0480021892.01.T01:three_prime_UTR
ACGGTAAAATGAGATGGCAA+AGG 0.601019 4:+65648975 MsG0480021892.01.T01:CDS
ATCAAATGTATTTCCCAAAG+GGG 0.601712 4:-65649136 None:intergenic
ACAAAGACGGTAAAATGAGA+TGG 0.603880 4:+65648969 MsG0480021892.01.T01:CDS
AGGAAGACATCTTTGAGCAA+AGG 0.606376 4:-65648763 None:intergenic
ACGGAAATTCAAATTCTGCA+TGG 0.606858 4:+65650986 MsG0480021892.01.T01:CDS
GCTTTCCAAACAAACTCAAG+AGG 0.607433 4:-65650227 None:intergenic
CATTATGCTGTGGTGTGGTG+TGG 0.610030 4:-65648611 None:intergenic
AGTAACCATCACCAAGTGCA+TGG 0.610345 4:-65649207 None:intergenic
TGAAGGGGTTCATTGATGAA+CGG 0.610996 4:+65650967 MsG0480021892.01.T01:CDS
TTGTCCATTATGCTGTGGTG+TGG 0.611711 4:-65648616 None:intergenic
CTTTCCAAACAAACTCAAGA+GGG 0.611868 4:-65650226 None:intergenic
TGAATTTGTCCATTATGCTG+TGG 0.616031 4:-65648621 None:intergenic
TATCCAACAAGCAATGCTGA+AGG 0.616041 4:+65649163 MsG0480021892.01.T01:CDS
CCAGAGTCCAAAAGTCTTTG+GGG 0.617094 4:+65650152 MsG0480021892.01.T01:CDS
CACCATGACAGGTGGACCTG+AGG 0.619701 4:+65650669 MsG0480021892.01.T01:CDS
GTTGAGCATTACTACAGCGG+TGG 0.633293 4:-65650084 None:intergenic
TCATTAGCTTAAATGTCTCG+CGG 0.637909 4:+65651206 MsG0480021892.01.T01:three_prime_UTR
TGTGTTGAGCATTACTACAG+CGG 0.646356 4:-65650087 None:intergenic
TCACATTGAGAACATTGAAG+GGG 0.651697 4:+65650952 MsG0480021892.01.T01:CDS
GATCAAATCAAAGCTTGGAG+TGG 0.652842 4:+65649521 MsG0480021892.01.T01:CDS
CTGTTGAAATATTGTCCATG+AGG 0.678022 4:-65648670 None:intergenic
TATAAACGATGTGCTTAGTG+GGG 0.697110 4:+65649998 MsG0480021892.01.T01:CDS
ACCATAATAGAGGAGAAACG+TGG 0.711895 4:-65648796 None:intergenic
TGGGATTAGGCTATACATGG+AGG 0.722762 4:+65650031 MsG0480021892.01.T01:CDS
CAACAGGTAAGAGACAAAGA+CGG 0.726123 4:+65648956 MsG0480021892.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATATATATAAATGA+AGG + Chr4:65651152-65651171 MsG0480021892.01.T01:three_prime_UTR 10.0%
!!! AATAATTATTTTTCTTAGTT+TGG + Chr4:65650466-65650485 MsG0480021892.01.T01:intron 10.0%
!!! CTTAATCTAATAATTTTATA+AGG - Chr4:65649939-65649958 None:intergenic 10.0%
!!! TATATAGATTTTTTTTTTGA+AGG - Chr4:65649667-65649686 None:intergenic 10.0%
!! AAAATAATCTATAACACAAT+GGG + Chr4:65650562-65650581 MsG0480021892.01.T01:CDS 15.0%
!! AATTTAGAGATGAAATTAAA+AGG + Chr4:65650311-65650330 MsG0480021892.01.T01:CDS 15.0%
!! ATACCTGTAAAAAATTAATT+AGG + Chr4:65651056-65651075 MsG0480021892.01.T01:exon 15.0%
!! ATATACCATTAATTACAATT+TGG - Chr4:65648879-65648898 None:intergenic 15.0%
!! ATTTAGAGATGAAATTAAAA+GGG + Chr4:65650312-65650331 MsG0480021892.01.T01:CDS 15.0%
!! GATTCAAAAATAGAAATAAA+TGG - Chr4:65649917-65649936 None:intergenic 15.0%
!! TAAAATAATCTATAACACAA+TGG + Chr4:65650561-65650580 MsG0480021892.01.T01:CDS 15.0%
!! TACTACTATTATTTAATTGA+GGG + Chr4:65648920-65648939 MsG0480021892.01.T01:intron 15.0%
!!! TTTTGCTAATTTTATAATCT+AGG - Chr4:65649575-65649594 None:intergenic 15.0%
!! AGATACCAAATTGTAATTAA+TGG + Chr4:65648871-65648890 MsG0480021892.01.T01:intron 20.0%
!! ATGTTATCTCTAATTTAGTT+TGG + Chr4:65650518-65650537 MsG0480021892.01.T01:intron 20.0%
!! CTACTACTATTATTTAATTG+AGG + Chr4:65648919-65648938 MsG0480021892.01.T01:intron 20.0%
!! GTGAAATAAAATCCATTTAT+TGG - Chr4:65650652-65650671 None:intergenic 20.0%
!! TAATAGACAAAGTTTGATTA+TGG - Chr4:65649851-65649870 None:intergenic 20.0%
!!! AATTATTTTTCTTAGTTTGG+AGG + Chr4:65650469-65650488 MsG0480021892.01.T01:intron 20.0%
!!! TGTCCTAATTAATTTTTTAC+AGG - Chr4:65651062-65651081 None:intergenic 20.0%
! AATCAAATGTATTTCCCAAA+GGG - Chr4:65649140-65649159 None:intergenic 25.0%
! ATGAAAATCTGATTAAGATC+CGG - Chr4:65651190-65651209 None:intergenic 25.0%
! GATATGTTTGACAAAGTAAA+AGG - Chr4:65649477-65649496 None:intergenic 25.0%
! GATTGAAATATATATACCTC+AGG - Chr4:65650688-65650707 None:intergenic 25.0%
! TAATCAAATGTATTTCCCAA+AGG - Chr4:65649141-65649160 None:intergenic 25.0%
! TTTGCATTTCTTTCAATGAT+TGG - Chr4:65650130-65650149 None:intergenic 25.0%
!! AATATCAAATTTTCGATGAG+TGG - Chr4:65650364-65650383 None:intergenic 25.0%
!! GTGATATGTTCATATGTTTT+TGG + Chr4:65648697-65648716 MsG0480021892.01.T01:CDS 25.0%
!! TCTAAAATGTAAAGTACTAG+TGG - Chr4:65648854-65648873 None:intergenic 25.0%
!! TTTTGCCATGCATATATAAA+TGG + Chr4:65649968-65649987 MsG0480021892.01.T01:intron 25.0%
!!! GCATATTTTGAATCTAATTG+TGG - Chr4:65649307-65649326 None:intergenic 25.0%
!!! TATCTCTAATTTAGTTTGGT+TGG + Chr4:65650522-65650541 MsG0480021892.01.T01:intron 25.0%
AAAGAGATCAAATCAAAGCT+TGG + Chr4:65649516-65649535 MsG0480021892.01.T01:CDS 30.0%
AAGATGACAAAACACCTATA+AGG + Chr4:65649424-65649443 MsG0480021892.01.T01:intron 30.0%
AATCACATTGAGAACATTGA+AGG + Chr4:65650950-65650969 MsG0480021892.01.T01:CDS 30.0%
AGACAAAGTTTGATTATGGT+CGG - Chr4:65649847-65649866 None:intergenic 30.0%
ATCAAATGTATTTCCCAAAG+GGG - Chr4:65649139-65649158 None:intergenic 30.0%
ATCACATTGAGAACATTGAA+GGG + Chr4:65650951-65650970 MsG0480021892.01.T01:CDS 30.0%
ATCTGATATGGAGCTAAAAA+AGG - Chr4:65649371-65649390 None:intergenic 30.0%
CTCAACACAAGAAATATTGA+AGG + Chr4:65650101-65650120 MsG0480021892.01.T01:CDS 30.0%
GAAAAGATAAAGGAAGAGAA+GGG - Chr4:65649276-65649295 None:intergenic 30.0%
GAGATGTAAAACCATAATAG+AGG - Chr4:65648809-65648828 None:intergenic 30.0%
TCTTTCAGTGTTTATCTCAT+AGG + Chr4:65650278-65650297 MsG0480021892.01.T01:CDS 30.0%
TTGGCAAATCATCCAATAAA+TGG + Chr4:65650637-65650656 MsG0480021892.01.T01:CDS 30.0%
TTTGTGGTTTCAGGAAATTT+AGG - Chr4:65649034-65649053 None:intergenic 30.0%
! AAGTGTTGTTATCTCTAACT+TGG + Chr4:65650591-65650610 MsG0480021892.01.T01:CDS 30.0%
! ATAGTTTGTGAGTCATCAAT+TGG - Chr4:65648742-65648761 None:intergenic 30.0%
! TTTGGAGGTTCTTTAATTTC+AGG + Chr4:65650484-65650503 MsG0480021892.01.T01:intron 30.0%
!! TGCTCTAATTTTGATAGCTA+AGG + Chr4:65650401-65650420 MsG0480021892.01.T01:intron 30.0%
!! TTCAATTGATGATGAGTTTG+TGG - Chr4:65649050-65649069 None:intergenic 30.0%
!! TTTAGCTCCATATCAGATTT+TGG + Chr4:65649373-65649392 MsG0480021892.01.T01:intron 30.0%
!!! GTGGTAAGATTTTAGCTATA+TGG + Chr4:65649540-65649559 MsG0480021892.01.T01:intron 30.0%
!!! TTCATATGTTTTTGGCTTTC+TGG + Chr4:65648705-65648724 MsG0480021892.01.T01:CDS 30.0%
ACAAAGACGGTAAAATGAGA+TGG + Chr4:65648969-65648988 MsG0480021892.01.T01:CDS 35.0%
ACGGAAATTCAAATTCTGCA+TGG + Chr4:65650986-65651005 MsG0480021892.01.T01:CDS 35.0%
ACTATAAACGATGTGCTTAG+TGG + Chr4:65649996-65650015 MsG0480021892.01.T01:CDS 35.0%
AGTCATATTCAAAGCAGCTA+TGG + Chr4:65651022-65651041 MsG0480021892.01.T01:CDS 35.0%
CTATAAACGATGTGCTTAGT+GGG + Chr4:65649997-65650016 MsG0480021892.01.T01:CDS 35.0%
CTGCACCATTTATATATGCA+TGG - Chr4:65649976-65649995 None:intergenic 35.0%
CTGTTGAAATATTGTCCATG+AGG - Chr4:65648673-65648692 None:intergenic 35.0%
CTTTCCAAACAAACTCAAGA+GGG - Chr4:65650229-65650248 None:intergenic 35.0%
GATGAAATTAAAAGGGTCTG+AGG + Chr4:65650319-65650338 MsG0480021892.01.T01:CDS 35.0%
GCAACCACAAACAAAAGATA+CGG - Chr4:65650887-65650906 None:intergenic 35.0%
GCTTGATCCAAAATCTGATA+TGG - Chr4:65649383-65649402 None:intergenic 35.0%
GGAAAAGATAAAGGAAGAGA+AGG - Chr4:65649277-65649296 None:intergenic 35.0%
GGTCTTGAAGGAAAAGATAA+AGG - Chr4:65649286-65649305 None:intergenic 35.0%
GTTGTTATCTCTAACTTGGT+AGG + Chr4:65650595-65650614 MsG0480021892.01.T01:CDS 35.0%
TATAAACGATGTGCTTAGTG+GGG + Chr4:65649998-65650017 MsG0480021892.01.T01:CDS 35.0%
TCACATTGAGAACATTGAAG+GGG + Chr4:65650952-65650971 MsG0480021892.01.T01:CDS 35.0%
TGAATTTGTCCATTATGCTG+TGG - Chr4:65648624-65648643 None:intergenic 35.0%
! ATGAAGGTATGACTATCTAC+CGG + Chr4:65651168-65651187 MsG0480021892.01.T01:three_prime_UTR 35.0%
! GAATCTAATTGTGGTCTTGA+AGG - Chr4:65649298-65649317 None:intergenic 35.0%
! GCTGTGACTTGAGATTTTAT+TGG + Chr4:65650796-65650815 MsG0480021892.01.T01:intron 35.0%
! TCATTAGCTTAAATGTCTCG+CGG + Chr4:65651206-65651225 MsG0480021892.01.T01:three_prime_UTR 35.0%
! TTGATTTCCCCAAAGACTTT+TGG - Chr4:65650162-65650181 None:intergenic 35.0%
!! AACACCGTATCTTTTGTTTG+TGG + Chr4:65650880-65650899 MsG0480021892.01.T01:intron 35.0%
!! AAGCTCGTAAGTTGATCAAA+AGG + Chr4:65650246-65650265 MsG0480021892.01.T01:CDS 35.0%
!! GATTGGCTTAACTTAGGTAT+AGG - Chr4:65650203-65650222 None:intergenic 35.0%
!! GGATTTTATTTCACCATGAC+AGG + Chr4:65650658-65650677 MsG0480021892.01.T01:CDS 35.0%
!! GGGCTTAATTAATTTGCAAC+AGG + Chr4:65648940-65648959 MsG0480021892.01.T01:intron 35.0%
!! TTTAGTTTGGTTGGTGTTTC+AGG + Chr4:65650531-65650550 MsG0480021892.01.T01:intron 35.0%
!! TTTTATTTCACCATGACAGG+TGG + Chr4:65650661-65650680 MsG0480021892.01.T01:CDS 35.0%
AACCAGAGTCCAAAAGTCTT+TGG + Chr4:65650150-65650169 MsG0480021892.01.T01:CDS 40.0%
ACCAGAGTCCAAAAGTCTTT+GGG + Chr4:65650151-65650170 MsG0480021892.01.T01:CDS 40.0%
ACCAGTAGAGAAAATGGCTT+TGG + Chr4:65650618-65650637 MsG0480021892.01.T01:CDS 40.0%
ACCATAATAGAGGAGAAACG+TGG - Chr4:65648799-65648818 None:intergenic 40.0%
ACCTCAAGATAAACCCCTTT+GGG + Chr4:65649123-65649142 MsG0480021892.01.T01:CDS 40.0%
ACGGTAAAATGAGATGGCAA+AGG + Chr4:65648975-65648994 MsG0480021892.01.T01:CDS 40.0%
AGGAAGACATCTTTGAGCAA+AGG - Chr4:65648766-65648785 None:intergenic 40.0%
ATCAACCACAACAAGATGGA+CGG - Chr4:65649713-65649732 None:intergenic 40.0%
CAACAGGTAAGAGACAAAGA+CGG + Chr4:65648956-65648975 MsG0480021892.01.T01:intron 40.0%
CCTATAAGGTCAGGATATGA+AGG + Chr4:65649438-65649457 MsG0480021892.01.T01:intron 40.0%
CCTTCATATCCTGACCTTAT+AGG - Chr4:65649441-65649460 None:intergenic 40.0%
CGGTAAAATGAGATGGCAAA+GGG + Chr4:65648976-65648995 MsG0480021892.01.T01:CDS 40.0%
CTATGGGATTAGGCTATACA+TGG + Chr4:65650028-65650047 MsG0480021892.01.T01:CDS 40.0%
CTCAAGTCACAGCAAAACAT+GGG - Chr4:65650789-65650808 None:intergenic 40.0%
GACAAAACACCTATAAGGTC+AGG + Chr4:65649429-65649448 MsG0480021892.01.T01:intron 40.0%
GATCAAATCAAAGCTTGGAG+TGG + Chr4:65649521-65649540 MsG0480021892.01.T01:CDS 40.0%
GATGATGAGTTTGTGGTTTC+AGG - Chr4:65649043-65649062 None:intergenic 40.0%
GCTTTCCAAACAAACTCAAG+AGG - Chr4:65650230-65650249 None:intergenic 40.0%
TATCCAACAAGCAATGCTGA+AGG + Chr4:65649163-65649182 MsG0480021892.01.T01:CDS 40.0%
TCCACGTTTCTCCTCTATTA+TGG + Chr4:65648795-65648814 MsG0480021892.01.T01:CDS 40.0%
TCTCAAGTCACAGCAAAACA+TGG - Chr4:65650790-65650809 None:intergenic 40.0%
TGAAGGGGTTCATTGATGAA+CGG + Chr4:65650967-65650986 MsG0480021892.01.T01:CDS 40.0%
TGTGATCAACCACAACAAGA+TGG - Chr4:65649717-65649736 None:intergenic 40.0%
TGTGTTGAGCATTACTACAG+CGG - Chr4:65650090-65650109 None:intergenic 40.0%
TTAGTGGGGTGATCTTCTAT+GGG + Chr4:65650012-65650031 MsG0480021892.01.T01:CDS 40.0%
TTCAAACTTCACCATGCACT+TGG + Chr4:65649196-65649215 MsG0480021892.01.T01:CDS 40.0%
! AGGAGAAACGTGGATTGATA+GGG - Chr4:65648789-65648808 None:intergenic 40.0%
! TCTTGTTGTGGTTGATCACA+TGG + Chr4:65649717-65649736 MsG0480021892.01.T01:intron 40.0%
AGTAACCATCACCAAGTGCA+TGG - Chr4:65649210-65649229 None:intergenic 45.0%
CAAACTCAAGAGGGTCTGAT+TGG - Chr4:65650220-65650239 None:intergenic 45.0%
CAAAGCAGCTATGGAGATCT+CGG + Chr4:65651031-65651050 MsG0480021892.01.T01:CDS 45.0%
CACCTCAAGATAAACCCCTT+TGG + Chr4:65649122-65649141 MsG0480021892.01.T01:CDS 45.0%
CCAGAGTCCAAAAGTCTTTG+GGG + Chr4:65650152-65650171 MsG0480021892.01.T01:CDS 45.0%
CTTAGTGGGGTGATCTTCTA+TGG + Chr4:65650011-65650030 MsG0480021892.01.T01:CDS 45.0%
GGGTGATCTTCTATGGGATT+AGG + Chr4:65650018-65650037 MsG0480021892.01.T01:CDS 45.0%
GGTAGGACCAGTAGAGAAAA+TGG + Chr4:65650612-65650631 MsG0480021892.01.T01:CDS 45.0%
GTTCCTTCAGCATTGCTTGT+TGG - Chr4:65649169-65649188 None:intergenic 45.0%
TATTGTCCATGAGGACTCAC+TGG - Chr4:65648664-65648683 None:intergenic 45.0%
TCCCAAAGGGGTTTATCTTG+AGG - Chr4:65649127-65649146 None:intergenic 45.0%
TGGGATTAGGCTATACATGG+AGG + Chr4:65650031-65650050 MsG0480021892.01.T01:CDS 45.0%
TTAGACCGTCCATCTTGTTG+TGG + Chr4:65649705-65649724 MsG0480021892.01.T01:intron 45.0%
TTGTCCATTATGCTGTGGTG+TGG - Chr4:65648619-65648638 None:intergenic 45.0%
! AGAAACGTGGATTGATAGGG+AGG - Chr4:65648786-65648805 None:intergenic 45.0%
! CAGACCCTCTTGAGTTTGTT+TGG + Chr4:65650222-65650241 MsG0480021892.01.T01:CDS 45.0%
! GAGGAGAAACGTGGATTGAT+AGG - Chr4:65648790-65648809 None:intergenic 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + Chr4:65649217-65649236 MsG0480021892.01.T01:CDS 45.0%
!! GCCAAAGCCATTTTCTCTAC+TGG - Chr4:65650622-65650641 None:intergenic 45.0%
!! GGGTCTGATTGGCTTAACTT+AGG - Chr4:65650209-65650228 None:intergenic 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + Chr4:65649216-65649235 MsG0480021892.01.T01:CDS 45.0%
!! ATATAAATAAATATAAATGA+AGG + Chr4:65651114-65651133 MsG0480021892.01.T01:three_prime_UTR 5.0%
CACACCACACCACAGCATAA+TGG + Chr4:65648612-65648631 MsG0480021892.01.T01:exon 50.0%
CATTATGCTGTGGTGTGGTG+TGG - Chr4:65648614-65648633 None:intergenic 50.0%
GTTGAGCATTACTACAGCGG+TGG - Chr4:65650087-65650106 None:intergenic 50.0%
TAGCTTAAATGTCTCGCGGC+TGG + Chr4:65651210-65651229 MsG0480021892.01.T01:three_prime_UTR 50.0%
! CCCCAAAGACTTTTGGACTC+TGG - Chr4:65650155-65650174 None:intergenic 50.0%
! CTTCACCATGCACTTGGTGA+TGG + Chr4:65649202-65649221 MsG0480021892.01.T01:CDS 50.0%
CATGAGCCAGTGAGTCCTCA+TGG + Chr4:65648655-65648674 MsG0480021892.01.T01:CDS 55.0%
TACCTCAGGTCCACCTGTCA+TGG - Chr4:65650674-65650693 None:intergenic 55.0%
CACCATGACAGGTGGACCTG+AGG + Chr4:65650669-65650688 MsG0480021892.01.T01:CDS 60.0%
TGCTGTGGTGTGGTGTGGTG+TGG - Chr4:65648609-65648628 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 65648557 65651259 65648557 ID=MsG0480021892.01;Name=MsG0480021892.01
Chr4 mRNA 65648557 65651259 65648557 ID=MsG0480021892.01.T01;Parent=MsG0480021892.01;Name=MsG0480021892.01.T01;_AED=0.38;_eAED=0.38;_QI=74|0.8|0.66|1|1|1|6|186|432
Chr4 exon 65648557 65648816 65648557 ID=MsG0480021892.01.T01:exon:20649;Parent=MsG0480021892.01.T01
Chr4 exon 65648962 65649334 65648962 ID=MsG0480021892.01.T01:exon:20650;Parent=MsG0480021892.01.T01
Chr4 exon 65649451 65649542 65649451 ID=MsG0480021892.01.T01:exon:20651;Parent=MsG0480021892.01.T01
Chr4 exon 65649996 65650340 65649996 ID=MsG0480021892.01.T01:exon:20652;Parent=MsG0480021892.01.T01
Chr4 exon 65650553 65650690 65650553 ID=MsG0480021892.01.T01:exon:20653;Parent=MsG0480021892.01.T01
Chr4 exon 65650909 65651259 65650909 ID=MsG0480021892.01.T01:exon:20654;Parent=MsG0480021892.01.T01
Chr4 five_prime_UTR 65648557 65648630 65648557 ID=MsG0480021892.01.T01:five_prime_utr;Parent=MsG0480021892.01.T01
Chr4 CDS 65648631 65648816 65648631 ID=MsG0480021892.01.T01:cds;Parent=MsG0480021892.01.T01
Chr4 CDS 65648962 65649334 65648962 ID=MsG0480021892.01.T01:cds;Parent=MsG0480021892.01.T01
Chr4 CDS 65649451 65649542 65649451 ID=MsG0480021892.01.T01:cds;Parent=MsG0480021892.01.T01
Chr4 CDS 65649996 65650340 65649996 ID=MsG0480021892.01.T01:cds;Parent=MsG0480021892.01.T01
Chr4 CDS 65650553 65650690 65650553 ID=MsG0480021892.01.T01:cds;Parent=MsG0480021892.01.T01
Chr4 CDS 65650909 65651073 65650909 ID=MsG0480021892.01.T01:cds;Parent=MsG0480021892.01.T01
Chr4 three_prime_UTR 65651074 65651259 65651074 ID=MsG0480021892.01.T01:three_prime_utr;Parent=MsG0480021892.01.T01
Gene Sequence

>MsG0480021892.01.T01

ATGGACAAATTCAATGAAGAAGTTCATGAGCCAGTGAGTCCTCATGGACAATATTTCAACAGCTCTGTGATATGTTCATATGTTTTTGGCTTTCTGGAATTAGCTATTCCAATTGATGACTCACAAACTATGCCTTTGCTCAAAGATGTCTTCCTCCCTATCAATCCACGTTTCTCCTCTATTATGGTAAGAGACAAAGACGGTAAAATGAGATGGCAAAGGGTTGAAGTGAAGCTTGAAGAGCACGTAAAGATTCCTAAATTTCCTGAAACCACAAACTCATCATCAATTGAATTATATGACAATTATCTTAGTGACTATGTAACAAATATTCTAACTTCAAGAACACCTCAAGATAAACCCCTTTGGGAAATACATTTGATTAAATATCCAACAAGCAATGCTGAAGGAACTTTGATATTCAAACTTCACCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTTTCTTGTCTACAAAGAGCTGATGACCCTTCTCTTCCTTTATCTTTTCCTTCAAGACCACAATTAGATTCAAAATATGCAAAGAAAAGATATGAAGGAACTGAATCTCAGCCTTTTACTTTGTCAAACATATCATTATCTCTTGATCAAATCAAAGAGATCAAATCAAAGCTTGGAGTGACTATAAACGATGTGCTTAGTGGGGTGATCTTCTATGGGATTAGGCTATACATGGAGGAGATGAATGAGAAGACAAAAAAATCAAATTCCACCGCTGTAGTAATGCTCAACACAAGAAATATTGAAGGTTACCAATCATTGAAAGAAATGCAAAAACCAGAGTCCAAAAGTCTTTGGGGAAATCAAATTTCTTTCTTACAAATACCTATACCTAAGTTAAGCCAATCAGACCCTCTTGAGTTTGTTTGGAAAGCTCGTAAGTTGATCAAAAGGAAGAGACGTTCTTTCAGTGTTTATCTCATAGGTTTGCTCTTGAATTTAGAGATGAAATTAAAAGGGTCTGAGGCTGTAGCTAAAATAATCTATAACACAATGGGAAATTCAAGTGTTGTTATCTCTAACTTGGTAGGACCAGTAGAGAAAATGGCTTTGGCAAATCATCCAATAAATGGATTTTATTTCACCATGACAGGTGGACCTGAGAATGTAGACATTACAATTATGAGCTATGTGAAAATATTAAGAATCACATTGAGAACATTGAAGGGGTTCATTGATGAACGGAAATTCAAATTCTGCATGGAGAAAGCAGTTGAAGTCATATTCAAAGCAGCTATGGAGATCTCGGAAATACCTGTAAAAAATTAA

Protein sequence

>MsG0480021892.01.T01

MDKFNEEVHEPVSPHGQYFNSSVICSYVFGFLELAIPIDDSQTMPLLKDVFLPINPRFSSIMVRDKDGKMRWQRVEVKLEEHVKIPKFPETTNSSSIELYDNYLSDYVTNILTSRTPQDKPLWEIHLIKYPTSNAEGTLIFKLHHALGDGYSLMGALLSCLQRADDPSLPLSFPSRPQLDSKYAKKRYEGTESQPFTLSNISLSLDQIKEIKSKLGVTINDVLSGVIFYGIRLYMEEMNEKTKKSNSTAVVMLNTRNIEGYQSLKEMQKPESKSLWGNQISFLQIPIPKLSQSDPLEFVWKARKLIKRKRRSFSVYLIGLLLNLEMKLKGSEAVAKIIYNTMGNSSVVISNLVGPVEKMALANHPINGFYFTMTGGPENVDITIMSYVKILRITLRTLKGFIDERKFKFCMEKAVEVIFKAAMEISEIPVKN*