AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024768.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024768.01.T01 MTR_5g016150 78.740 254 12 3 1 212 52 305 4.28e-141 396
MsG0580024768.01.T01 MTR_4g095310 67.805 205 38 2 1 177 52 256 1.23e-98 287
MsG0580024768.01.T01 MTR_1g018320 48.529 204 75 4 3 177 56 258 4.20e-62 194
MsG0580024768.01.T01 MTR_3g045440 28.643 199 113 4 3 173 59 256 4.51e-28 107
MsG0580024768.01.T01 MTR_6g086560 30.729 192 104 4 11 174 77 267 3.16e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024768.01.T01 AT4G37470 63.256 215 47 3 1 183 52 266 3.18e-93 274
MsG0580024768.01.T01 AT3G03990 46.890 209 82 3 3 183 56 263 1.16e-61 193
MsG0580024768.01.T01 AT3G24420 33.010 206 108 4 11 187 69 273 5.37e-35 125

Find 71 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTCACACTAGAAAA+TGG 0.169184 5:-9440810 None:intergenic
CAGCGATAGCGTTGAATAAT+TGG 0.189658 5:-9438864 None:intergenic
TTATGATTTACTTGCTATTT+TGG 0.190068 5:+9438055 MsG0580024768.01.T01:CDS
TTGATGAAGCCTCTGGATTT+TGG 0.228850 5:-9440612 None:intergenic
CATTGGTGGGTGATTAATTA+AGG 0.234862 5:+9440979 MsG0580024768.01.T01:three_prime_UTR
CTCTCAGAATCAAAGTATTC+AGG 0.261092 5:-9438008 None:intergenic
GTAATTTGAATAGCCATTCT+TGG 0.266430 5:+9440687 MsG0580024768.01.T01:exon
GGCTTCATCCTTGATGAAAA+TGG 0.296110 5:+9440654 MsG0580024768.01.T01:CDS
ATTACCCTTCTCCTTCTTCC+AGG 0.301080 5:-9440757 None:intergenic
AGGATTAAGTTAACCATGAT+TGG 0.311952 5:+9441029 MsG0580024768.01.T01:three_prime_UTR
CGCTCCACTGGCTGTGGGTG+GGG 0.319640 5:+9438915 MsG0580024768.01.T01:CDS
AATTACAAAGCATGGTGTTA+TGG 0.329086 5:+9438889 MsG0580024768.01.T01:CDS
TATCTAGTGGGTGATTCATT+AGG 0.329783 5:+9441009 MsG0580024768.01.T01:three_prime_UTR
GAGAGACATTCAAGCTTAGA+AGG 0.335053 5:+9438026 MsG0580024768.01.T01:CDS
ACTGGCTGTGGGTGGGGACA+TGG 0.358536 5:+9438921 MsG0580024768.01.T01:CDS
GGCGGTTCCGGTGATGGTTT+CGG 0.364938 5:+9439098 MsG0580024768.01.T01:CDS
CCTTCTTCACACTAGAAAAT+GGG 0.369655 5:-9440809 None:intergenic
TTGTCTAGCAAACTACGTTT+TGG 0.373292 5:+9440929 MsG0580024768.01.T01:three_prime_UTR
TGAGAAAGATATGGCGGTTC+CGG 0.374023 5:+9439086 MsG0580024768.01.T01:CDS
TTGCTAGCTAAGATAAGTTA+AGG 0.381948 5:+9440732 MsG0580024768.01.T01:three_prime_UTR
GGAAAGTGTGGTAGTTTCTC+TGG 0.388541 5:-9440591 None:intergenic
AATTGACTCTTGCGTATTGT+TGG 0.398064 5:+9438088 MsG0580024768.01.T01:CDS
TTGAACGATGTGAATTACTT+TGG 0.403798 5:+9438817 MsG0580024768.01.T01:CDS
CAACACCGGAATAACATATC+TGG 0.406423 5:-9439201 None:intergenic
GAATCATATTTAAACATCAT+TGG 0.414670 5:+9440962 MsG0580024768.01.T01:three_prime_UTR
TTAATGGTTATGTTATGTTT+TGG 0.417924 5:+9441091 MsG0580024768.01.T01:three_prime_UTR
TCGCTCCACTGGCTGTGGGT+GGG 0.418335 5:+9438914 MsG0580024768.01.T01:CDS
GCTCACCAGATATGTTATTC+CGG 0.437200 5:+9439196 MsG0580024768.01.T01:CDS
TGGATTCGCTCCACTGGCTG+TGG 0.437225 5:+9438909 MsG0580024768.01.T01:CDS
AAAGATACATGAGAAAATAG+AGG 0.447190 5:-9440903 None:intergenic
CATGGATTCAGTGGCAGTAC+AGG 0.447432 5:+9438939 MsG0580024768.01.T01:CDS
CTAAGATAAGTTAAGGGTCC+TGG 0.447962 5:+9440739 MsG0580024768.01.T01:three_prime_UTR
TTCGCTCCACTGGCTGTGGG+TGG 0.454426 5:+9438913 MsG0580024768.01.T01:CDS
GGATTAAGTTAACCATGATT+GGG 0.457454 5:+9441030 MsG0580024768.01.T01:three_prime_UTR
TATAAAAGAGCACCCAATCA+TGG 0.487334 5:-9441042 None:intergenic
AGATATGGCGGTTCCGGTGA+TGG 0.489079 5:+9439092 MsG0580024768.01.T01:CDS
ATCAAAGTATTCAGGGTTAG+TGG 0.490058 5:-9438000 None:intergenic
TATACAAGCTGAGAAAGATA+TGG 0.495978 5:+9439077 MsG0580024768.01.T01:CDS
GAGTATCTTCACCAACACTT+AGG 0.503482 5:+9439120 MsG0580024768.01.T01:CDS
AAGTTAAGGGTCCTGGAAGA+AGG 0.512121 5:+9440746 MsG0580024768.01.T01:three_prime_UTR
GTGTTATGGATTCGCTCCAC+TGG 0.516025 5:+9438903 MsG0580024768.01.T01:CDS
TCTCAGAATCAAAGTATTCA+GGG 0.516412 5:-9438007 None:intergenic
AACGATGTGAATTACTTTGG+AGG 0.518896 5:+9438820 MsG0580024768.01.T01:CDS
CATTCTTGGCTGATTGATGT+TGG 0.519391 5:+9440701 MsG0580024768.01.T01:three_prime_UTR
TCATATTTAAACATCATTGG+TGG 0.526762 5:+9440965 MsG0580024768.01.T01:three_prime_UTR
GACACTATTAGAGCTATGTC+TGG 0.532117 5:-9438991 None:intergenic
TGCTAGCTAAGATAAGTTAA+GGG 0.538690 5:+9440733 MsG0580024768.01.T01:three_prime_UTR
CATATTTAAACATCATTGGT+GGG 0.540087 5:+9440966 MsG0580024768.01.T01:three_prime_UTR
CAACATCAATCAGCCAAGAA+TGG 0.541892 5:-9440700 None:intergenic
TCGCTGAAAATTACAAAGCA+TGG 0.559131 5:+9438881 MsG0580024768.01.T01:CDS
GGATTCGCTCCACTGGCTGT+GGG 0.566939 5:+9438910 MsG0580024768.01.T01:CDS
ATGTCCCCACCCACAGCCAG+TGG 0.567376 5:-9438919 None:intergenic
CTTCTTCACACTAGAAAATG+GGG 0.570390 5:-9440808 None:intergenic
CTATATGATAACATGGGTGC+TGG 0.576349 5:+9437975 None:intergenic
GTCGAACATTGTTCAACATG+AGG 0.582241 5:+9438968 MsG0580024768.01.T01:CDS
AAGATACATGAGAAAATAGA+GGG 0.585612 5:-9440902 None:intergenic
AGGTGGTCAGTCCATTGTTG+AGG 0.589895 5:+9439140 MsG0580024768.01.T01:CDS
AGGGTCCTGGAAGAAGGAGA+AGG 0.601755 5:+9440752 MsG0580024768.01.T01:three_prime_UTR
GGGTGGGGACATGGATTCAG+TGG 0.603042 5:+9438930 MsG0580024768.01.T01:CDS
TATCTTCACCAACACTTAGG+TGG 0.616011 5:+9439123 MsG0580024768.01.T01:CDS
AGTCTGCATGACCTCAACAA+TGG 0.633137 5:-9439151 None:intergenic
TATGACAAGGCACAGTAACA+AGG 0.637592 5:-9439053 None:intergenic
GGGTCCTGGAAGAAGGAGAA+GGG 0.643144 5:+9440753 MsG0580024768.01.T01:three_prime_UTR
AGATACTCCGAAACCATCAC+CGG 0.643577 5:-9439105 None:intergenic
GTTGAGGTCATGCAGACTGA+TGG 0.648337 5:+9439156 MsG0580024768.01.T01:CDS
ACATAGCTCTAATAGTGTCA+CGG 0.660027 5:+9438995 MsG0580024768.01.T01:CDS
CCACACTTTCCAAAATCCAG+AGG 0.663526 5:+9440603 MsG0580024768.01.T01:CDS
ACAAGCTGAGAAAGATATGG+CGG 0.694733 5:+9439080 MsG0580024768.01.T01:CDS
TCAGCTTGTATAATATGACA+AGG 0.695896 5:-9439066 None:intergenic
TGGACTGACCACCTAAGTGT+TGG 0.706295 5:-9439131 None:intergenic
ATATCTGGTGAGCTTAACTG+CGG 0.723861 5:-9439186 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAAAAAAACGT+TGG + Chr5:9440013-9440032 MsG0580024768.01.T01:intron 10.0%
!! AAAATTGTAACATTGTTTAA+TGG + Chr5:9438235-9438254 MsG0580024768.01.T01:intron 15.0%
!! AATAATTGAATAGAATAAAC+AGG - Chr5:9439522-9439541 None:intergenic 15.0%
!! AATATGAAATTTGATATAGT+TGG + Chr5:9438624-9438643 MsG0580024768.01.T01:intron 15.0%
!! ATAATTGAATAGAATAAACA+GGG - Chr5:9439521-9439540 None:intergenic 15.0%
!! ATATCAAATTTCATATTACT+AGG - Chr5:9438621-9438640 None:intergenic 15.0%
!! TATCAAATTTCATATTACTA+GGG - Chr5:9438620-9438639 None:intergenic 15.0%
!!! AATATTGACTTGTAAAAAAT+TGG + Chr5:9439956-9439975 MsG0580024768.01.T01:intron 15.0%
!!! ATTTTATTTTCAAATCTCAT+AGG - Chr5:9440416-9440435 None:intergenic 15.0%
!!! TATTTTCTGTTAGTTAAATA+AGG - Chr5:9440075-9440094 None:intergenic 15.0%
!! AAATAATCAAGAGAAATGTA+AGG - Chr5:9438444-9438463 None:intergenic 20.0%
!! AAATAGTCATATCTAAACAA+AGG + Chr5:9440279-9440298 MsG0580024768.01.T01:intron 20.0%
!! AATAATCAAGAGAAATGTAA+GGG - Chr5:9438443-9438462 None:intergenic 20.0%
!! ATAAAACTTACTAATTACCT+TGG - Chr5:9438197-9438216 None:intergenic 20.0%
!! ATACATATATCATTCATATG+TGG + Chr5:9440132-9440151 MsG0580024768.01.T01:intron 20.0%
!! GAATCATATTTAAACATCAT+TGG + Chr5:9440962-9440981 MsG0580024768.01.T01:three_prime_UTR 20.0%
!! TAAATGTTTATCCACAAATT+AGG + Chr5:9440330-9440349 MsG0580024768.01.T01:intron 20.0%
!! TACAATTCCATAATCAAATT+AGG + Chr5:9440093-9440112 MsG0580024768.01.T01:intron 20.0%
!! TGAAATTCCTAATTTGATTA+TGG - Chr5:9440103-9440122 None:intergenic 20.0%
!! TGAACAATAAACACAAAATT+TGG + Chr5:9438267-9438286 MsG0580024768.01.T01:intron 20.0%
!!! AACCTTTTTTTTGAGTAAAT+AGG - Chr5:9439895-9439914 None:intergenic 20.0%
!!! AATTTATTTTCTCAACCAAT+TGG + Chr5:9439637-9439656 MsG0580024768.01.T01:intron 20.0%
!!! AGATTTTAAAAAAGGGAAAA+TGG + Chr5:9438335-9438354 MsG0580024768.01.T01:intron 20.0%
!!! ATTTTATTGTTAAGCAACTT+AGG - Chr5:9438693-9438712 None:intergenic 20.0%
!!! CTTACTTTTTTTTCTAACAA+TGG + Chr5:9440562-9440581 MsG0580024768.01.T01:intron 20.0%
!!! TCAAATCTTAATCACAATTT+TGG - Chr5:9439287-9439306 None:intergenic 20.0%
!!! TTAATGGTTATGTTATGTTT+TGG + Chr5:9441091-9441110 MsG0580024768.01.T01:three_prime_UTR 20.0%
!!! TTATGATTTACTTGCTATTT+TGG + Chr5:9438055-9438074 MsG0580024768.01.T01:CDS 20.0%
!!! TTTAAAACCTTATAGTTGAT+TGG + Chr5:9439456-9439475 MsG0580024768.01.T01:intron 20.0%
!!! TTTTAGACATAGTTTGAATT+TGG + Chr5:9438502-9438521 MsG0580024768.01.T01:intron 20.0%
! AAAGATACATGAGAAAATAG+AGG - Chr5:9440906-9440925 None:intergenic 25.0%
! AACAAAAACAACAAATACAG+AGG + Chr5:9440633-9440652 MsG0580024768.01.T01:CDS 25.0%
! AAGAACATAAAACATCTCAA+TGG - Chr5:9438571-9438590 None:intergenic 25.0%
! AAGATACATGAGAAAATAGA+GGG - Chr5:9440905-9440924 None:intergenic 25.0%
! AATATAATGTTGTGACGTAA+CGG - Chr5:9439418-9439437 None:intergenic 25.0%
! AATGATATCTAATTGAACCT+AGG - Chr5:9438401-9438420 None:intergenic 25.0%
! ATCTTCAATCATATTAACTG+AGG + Chr5:9439785-9439804 MsG0580024768.01.T01:intron 25.0%
! CATATTTAAACATCATTGGT+GGG + Chr5:9440966-9440985 MsG0580024768.01.T01:three_prime_UTR 25.0%
! GTCCTATTTACTCAAAAAAA+AGG + Chr5:9439890-9439909 MsG0580024768.01.T01:intron 25.0%
! TCATATTTAAACATCATTGG+TGG + Chr5:9440965-9440984 MsG0580024768.01.T01:three_prime_UTR 25.0%
! TCGACTATAAGTATATAGTT+TGG + Chr5:9438469-9438488 MsG0580024768.01.T01:intron 25.0%
! TTGAACCTAGGTATAAAAAA+AGG - Chr5:9438389-9438408 None:intergenic 25.0%
! TTTAAAAAAACGTTGGAACT+TGG + Chr5:9440020-9440039 MsG0580024768.01.T01:intron 25.0%
!! ATTTGACTTAGTCATAGTTA+GGG + Chr5:9439301-9439320 MsG0580024768.01.T01:intron 25.0%
!! CTATTTGTTGAACAATTTGT+TGG - Chr5:9440265-9440284 None:intergenic 25.0%
!! TTTTATATGTGATTGTGACA+TGG + Chr5:9438769-9438788 MsG0580024768.01.T01:intron 25.0%
!!! ACTTCTGTACTGTTTTATTA+TGG + Chr5:9439713-9439732 MsG0580024768.01.T01:intron 25.0%
!!! AGGAGTAACAATATTTTAAG+TGG - Chr5:9438369-9438388 None:intergenic 25.0%
!!! GTTTATTTTCTCTTTGAGTT+AGG + Chr5:9438791-9438810 MsG0580024768.01.T01:intron 25.0%
!!! TGTTTGTTGTGATTTAATTG+TGG + Chr5:9439552-9439571 MsG0580024768.01.T01:intron 25.0%
!!! TTACTCCTTTTTTTATACCT+AGG + Chr5:9438381-9438400 MsG0580024768.01.T01:intron 25.0%
AATAACAAGTATTTACCTCG+TGG - Chr5:9439255-9439274 None:intergenic 30.0%
AATAAGCCAGATAAAGTCTA+AGG - Chr5:9440366-9440385 None:intergenic 30.0%
AGGATTAAGTTAACCATGAT+TGG + Chr5:9441029-9441048 MsG0580024768.01.T01:three_prime_UTR 30.0%
AGTCTTTACTCTTATGTATG+AGG + Chr5:9440202-9440221 MsG0580024768.01.T01:intron 30.0%
ATAACAAGTATTTACCTCGT+GGG - Chr5:9439254-9439273 None:intergenic 30.0%
CAATCAATTCAACTTTAGCT+GGG + Chr5:9438532-9438551 MsG0580024768.01.T01:intron 30.0%
GACCAATTCATCGATATAAT+AGG - Chr5:9439852-9439871 None:intergenic 30.0%
GAGGAAAACTTGATTGAAAA+TGG + Chr5:9440221-9440240 MsG0580024768.01.T01:intron 30.0%
GGATTAAGTTAACCATGATT+GGG + Chr5:9441030-9441049 MsG0580024768.01.T01:three_prime_UTR 30.0%
GTAATTTGAATAGCCATTCT+TGG + Chr5:9440687-9440706 MsG0580024768.01.T01:exon 30.0%
GTCCTATTATATCGATGAAT+TGG + Chr5:9439847-9439866 MsG0580024768.01.T01:intron 30.0%
GTTGTGATTTAATTGTGGTA+TGG + Chr5:9439557-9439576 MsG0580024768.01.T01:intron 30.0%
TAGTCATATCTAAACAAAGG+TGG + Chr5:9440282-9440301 MsG0580024768.01.T01:intron 30.0%
TATACAAGCTGAGAAAGATA+TGG + Chr5:9439077-9439096 MsG0580024768.01.T01:CDS 30.0%
TATCTCTCCAATCAACTATA+AGG - Chr5:9439466-9439485 None:intergenic 30.0%
TATTGTTAAGCAACTTAGGT+AGG - Chr5:9438689-9438708 None:intergenic 30.0%
TCAATCAATTCAACTTTAGC+TGG + Chr5:9438531-9438550 MsG0580024768.01.T01:intron 30.0%
TCAGCTTGTATAATATGACA+AGG - Chr5:9439069-9439088 None:intergenic 30.0%
TCATACATAAGAGTAAAGAC+TGG - Chr5:9440203-9440222 None:intergenic 30.0%
TGCACAAAATAGTTGTTCTT+CGG + Chr5:9440493-9440512 MsG0580024768.01.T01:intron 30.0%
TGCTAGCTAAGATAAGTTAA+GGG + Chr5:9440733-9440752 MsG0580024768.01.T01:three_prime_UTR 30.0%
TTGAACGATGTGAATTACTT+TGG + Chr5:9438817-9438836 MsG0580024768.01.T01:CDS 30.0%
TTGCTAGCTAAGATAAGTTA+AGG + Chr5:9440732-9440751 MsG0580024768.01.T01:three_prime_UTR 30.0%
TTTGTGTGGCCTAAATTAAT+GGG + Chr5:9439665-9439684 MsG0580024768.01.T01:intron 30.0%
! AATTACAAAGCATGGTGTTA+TGG + Chr5:9438889-9438908 MsG0580024768.01.T01:CDS 30.0%
! GATTTGACTTAGTCATAGTT+AGG + Chr5:9439300-9439319 MsG0580024768.01.T01:intron 30.0%
! TAAGGATCGTTTTATCTAGT+GGG + Chr5:9440997-9441016 MsG0580024768.01.T01:three_prime_UTR 30.0%
! TCTCAGAATCAAAGTATTCA+GGG - Chr5:9438010-9438029 None:intergenic 30.0%
! TTAAGGATCGTTTTATCTAG+TGG + Chr5:9440996-9441015 MsG0580024768.01.T01:three_prime_UTR 30.0%
! TTAGACTTTATCTGGCTTAT+TGG + Chr5:9440365-9440384 MsG0580024768.01.T01:intron 30.0%
!! GTTCTGTATGCATGTTTTAA+TGG + Chr5:9441075-9441094 MsG0580024768.01.T01:three_prime_UTR 30.0%
!!! ATCTTTTCCTTAACTTGTCA+TGG + Chr5:9438160-9438179 MsG0580024768.01.T01:intron 30.0%
AACGATGTGAATTACTTTGG+AGG + Chr5:9438820-9438839 MsG0580024768.01.T01:CDS 35.0%
AGTTTGTCCCCCATTAATTT+AGG - Chr5:9439677-9439696 None:intergenic 35.0%
ATTGGAGAGATATACTTGTG+AGG + Chr5:9439474-9439493 MsG0580024768.01.T01:intron 35.0%
CCTTCTTCACACTAGAAAAT+GGG - Chr5:9440812-9440831 None:intergenic 35.0%
CTTCTTCACACTAGAAAATG+GGG - Chr5:9440811-9440830 None:intergenic 35.0%
CTTTGTGTGGCCTAAATTAA+TGG + Chr5:9439664-9439683 MsG0580024768.01.T01:intron 35.0%
GAAGACATGTTCCTAATTTG+TGG - Chr5:9440344-9440363 None:intergenic 35.0%
GGATAGTTGTGTGGTAATTT+CGG + Chr5:9439380-9439399 MsG0580024768.01.T01:intron 35.0%
GTACTGTCTGAATCATAGTT+GGG + Chr5:9439750-9439769 MsG0580024768.01.T01:intron 35.0%
TACTAATTACCTTGGTGAAC+CGG - Chr5:9438189-9438208 None:intergenic 35.0%
TCCTTCTTCACACTAGAAAA+TGG - Chr5:9440813-9440832 None:intergenic 35.0%
TCGCTGAAAATTACAAAGCA+TGG + Chr5:9438881-9438900 MsG0580024768.01.T01:CDS 35.0%
TGAATGTGTTTAAGCAACAC+CGG - Chr5:9439218-9439237 None:intergenic 35.0%
TGAATTGGTCAAATTATGCG+CGG + Chr5:9439862-9439881 MsG0580024768.01.T01:intron 35.0%
TGTACTGTCTGAATCATAGT+TGG + Chr5:9439749-9439768 MsG0580024768.01.T01:intron 35.0%
TGTCTTCCTTAGACTTTATC+TGG + Chr5:9440357-9440376 MsG0580024768.01.T01:intron 35.0%
TTGTGTGGCCTAAATTAATG+GGG + Chr5:9439666-9439685 MsG0580024768.01.T01:intron 35.0%
! AATTGACTCTTGCGTATTGT+TGG + Chr5:9438088-9438107 MsG0580024768.01.T01:CDS 35.0%
! ATCAAAGTATTCAGGGTTAG+TGG - Chr5:9438003-9438022 None:intergenic 35.0%
! ATCTGCTTCCATTTTCATCA+AGG - Chr5:9440665-9440684 None:intergenic 35.0%
! CATTGGTGGGTGATTAATTA+AGG + Chr5:9440979-9440998 MsG0580024768.01.T01:three_prime_UTR 35.0%
! CTCTCAGAATCAAAGTATTC+AGG - Chr5:9438011-9438030 None:intergenic 35.0%
! GACTGGTTACAATTTGCTTA+AGG - Chr5:9440186-9440205 None:intergenic 35.0%
! TATCTAGTGGGTGATTCATT+AGG + Chr5:9441009-9441028 MsG0580024768.01.T01:three_prime_UTR 35.0%
! TTGTCTAGCAAACTACGTTT+TGG + Chr5:9440929-9440948 MsG0580024768.01.T01:three_prime_UTR 35.0%
!! ACATAGCTCTAATAGTGTCA+CGG + Chr5:9438995-9439014 MsG0580024768.01.T01:CDS 35.0%
!! CATTCTGTTTCTGCAATGAT+TGG + Chr5:9438112-9438131 MsG0580024768.01.T01:intron 35.0%
!! TATAAAAGAGCACCCAATCA+TGG - Chr5:9441045-9441064 None:intergenic 35.0%
!! TGTTCTTGTTGTTAACGTGT+CGG + Chr5:9438584-9438603 MsG0580024768.01.T01:intron 35.0%
AACTTAATATTGAGCCCACG+AGG + Chr5:9439237-9439256 MsG0580024768.01.T01:intron 40.0%
ACAAGCTGAGAAAGATATGG+CGG + Chr5:9439080-9439099 MsG0580024768.01.T01:CDS 40.0%
ATATCTGGTGAGCTTAACTG+CGG - Chr5:9439189-9439208 None:intergenic 40.0%
CAACACCGGAATAACATATC+TGG - Chr5:9439204-9439223 None:intergenic 40.0%
CAACATCAATCAGCCAAGAA+TGG - Chr5:9440703-9440722 None:intergenic 40.0%
CATTCTTGGCTGATTGATGT+TGG + Chr5:9440701-9440720 MsG0580024768.01.T01:three_prime_UTR 40.0%
CTAAGATAAGTTAAGGGTCC+TGG + Chr5:9440739-9440758 MsG0580024768.01.T01:three_prime_UTR 40.0%
GACACTATTAGAGCTATGTC+TGG - Chr5:9438994-9439013 None:intergenic 40.0%
GAGAGACATTCAAGCTTAGA+AGG + Chr5:9438026-9438045 MsG0580024768.01.T01:CDS 40.0%
GAGTATCTTCACCAACACTT+AGG + Chr5:9439120-9439139 MsG0580024768.01.T01:CDS 40.0%
GCTCACCAGATATGTTATTC+CGG + Chr5:9439196-9439215 MsG0580024768.01.T01:CDS 40.0%
GGCTTCATCCTTGATGAAAA+TGG + Chr5:9440654-9440673 MsG0580024768.01.T01:CDS 40.0%
GTCGAACATTGTTCAACATG+AGG + Chr5:9438968-9438987 MsG0580024768.01.T01:CDS 40.0%
GTTGTCCATCACTATGTTGT+GGG + Chr5:9439606-9439625 MsG0580024768.01.T01:intron 40.0%
TATCTTCACCAACACTTAGG+TGG + Chr5:9439123-9439142 MsG0580024768.01.T01:CDS 40.0%
TATGACAAGGCACAGTAACA+AGG - Chr5:9439056-9439075 None:intergenic 40.0%
TCATAGTTAGGGACGTTAGT+TGG + Chr5:9439312-9439331 MsG0580024768.01.T01:intron 40.0%
TGGTATGGAAGAATGACAGT+GGG + Chr5:9439572-9439591 MsG0580024768.01.T01:intron 40.0%
TGTGTGGCCTAAATTAATGG+GGG + Chr5:9439667-9439686 MsG0580024768.01.T01:intron 40.0%
TTGTCCATCACTATGTTGTG+GGG + Chr5:9439607-9439626 MsG0580024768.01.T01:intron 40.0%
! AAATTTTGCTCCTGACTGAG+TGG + Chr5:9439359-9439378 MsG0580024768.01.T01:intron 40.0%
! AACAGTACAGAAGTTGACTC+TGG - Chr5:9439707-9439726 None:intergenic 40.0%
! ACCAATTGGAGTACTTTGTG+TGG + Chr5:9439651-9439670 MsG0580024768.01.T01:intron 40.0%
! CAGCGATAGCGTTGAATAAT+TGG - Chr5:9438867-9438886 None:intergenic 40.0%
! GACTTTATCTGGCTTATTGG+TGG + Chr5:9440368-9440387 MsG0580024768.01.T01:intron 40.0%
! TTGATGAAGCCTCTGGATTT+TGG - Chr5:9440615-9440634 None:intergenic 40.0%
!! CCCATTTTCTAGTGTGAAGA+AGG + Chr5:9440809-9440828 MsG0580024768.01.T01:three_prime_UTR 40.0%
!! CCTTAACTTGTCATGGTTTC+CGG + Chr5:9438167-9438186 MsG0580024768.01.T01:intron 40.0%
!! GTTTTTGTTGATGAAGCCTC+TGG - Chr5:9440622-9440641 None:intergenic 40.0%
AAGTTAAGGGTCCTGGAAGA+AGG + Chr5:9440746-9440765 MsG0580024768.01.T01:three_prime_UTR 45.0%
ACACAACTATCCACTCAGTC+AGG - Chr5:9439372-9439391 None:intergenic 45.0%
ACATCCCCACAACATAGTGA+TGG - Chr5:9439614-9439633 None:intergenic 45.0%
AGAATGACAGTGGGAATCGA+AGG + Chr5:9439581-9439600 MsG0580024768.01.T01:intron 45.0%
AGATACTCCGAAACCATCAC+CGG - Chr5:9439108-9439127 None:intergenic 45.0%
AGTCTGCATGACCTCAACAA+TGG - Chr5:9439154-9439173 None:intergenic 45.0%
ATTACCCTTCTCCTTCTTCC+AGG - Chr5:9440760-9440779 None:intergenic 45.0%
ATTGGTCAAATTATGCGCGG+AGG + Chr5:9439865-9439884 MsG0580024768.01.T01:intron 45.0%
ATTGTGTGTGTGACAGTGTG+AGG - Chr5:9438300-9438319 None:intergenic 45.0%
CCACACTTTCCAAAATCCAG+AGG + Chr5:9440603-9440622 MsG0580024768.01.T01:CDS 45.0%
CCGGAAACCATGACAAGTTA+AGG - Chr5:9438170-9438189 None:intergenic 45.0%
CGTTGTCCATCACTATGTTG+TGG + Chr5:9439605-9439624 MsG0580024768.01.T01:intron 45.0%
GTGGTATGGAAGAATGACAG+TGG + Chr5:9439571-9439590 MsG0580024768.01.T01:intron 45.0%
TGACTGAGTGGATAGTTGTG+TGG + Chr5:9439371-9439390 MsG0580024768.01.T01:intron 45.0%
TGAGAAAGATATGGCGGTTC+CGG + Chr5:9439086-9439105 MsG0580024768.01.T01:CDS 45.0%
! GCCACACAAAGTACTCCAAT+TGG - Chr5:9439655-9439674 None:intergenic 45.0%
! GGAAAGTGTGGTAGTTTCTC+TGG - Chr5:9440594-9440613 None:intergenic 45.0%
!! CCTCTGGATTTTGGAAAGTG+TGG - Chr5:9440606-9440625 None:intergenic 45.0%
!! TAAAAAAAAAAAAAACTATT+AGG + Chr5:9440048-9440067 MsG0580024768.01.T01:intron 5.0%
!!! ATAAAATAGATTTTAAAAAA+GGG + Chr5:9438328-9438347 MsG0580024768.01.T01:intron 5.0%
!!! TAATAGTTTTTTTTTTTTTT+AGG - Chr5:9440049-9440068 None:intergenic 5.0%
!!! TATAAAATAGATTTTAAAAA+AGG + Chr5:9438327-9438346 MsG0580024768.01.T01:intron 5.0%
AGGTGGTCAGTCCATTGTTG+AGG + Chr5:9439140-9439159 MsG0580024768.01.T01:CDS 50.0%
CATGGATTCAGTGGCAGTAC+AGG + Chr5:9438939-9438958 MsG0580024768.01.T01:CDS 50.0%
GTGTTATGGATTCGCTCCAC+TGG + Chr5:9438903-9438922 MsG0580024768.01.T01:CDS 50.0%
GTTGAGGTCATGCAGACTGA+TGG + Chr5:9439156-9439175 MsG0580024768.01.T01:CDS 50.0%
TCATGGTTTCCGGTTCACCA+AGG + Chr5:9438177-9438196 MsG0580024768.01.T01:intron 50.0%
TGGACTGACCACCTAAGTGT+TGG - Chr5:9439134-9439153 None:intergenic 50.0%
AGATATGGCGGTTCCGGTGA+TGG + Chr5:9439092-9439111 MsG0580024768.01.T01:CDS 55.0%
AGGGTCCTGGAAGAAGGAGA+AGG + Chr5:9440752-9440771 MsG0580024768.01.T01:three_prime_UTR 55.0%
GGGTCCTGGAAGAAGGAGAA+GGG + Chr5:9440753-9440772 MsG0580024768.01.T01:three_prime_UTR 55.0%
GTGTGTGTGACAGTGTGAGG+CGG - Chr5:9438297-9438316 None:intergenic 55.0%
GGGTGGGGACATGGATTCAG+TGG + Chr5:9438930-9438949 MsG0580024768.01.T01:CDS 60.0%
! GGATTCGCTCCACTGGCTGT+GGG + Chr5:9438910-9438929 MsG0580024768.01.T01:CDS 60.0%
! GGCGGTTCCGGTGATGGTTT+CGG + Chr5:9439098-9439117 MsG0580024768.01.T01:CDS 60.0%
! TGGATTCGCTCCACTGGCTG+TGG + Chr5:9438909-9438928 MsG0580024768.01.T01:CDS 60.0%
ACTGGCTGTGGGTGGGGACA+TGG + Chr5:9438921-9438940 MsG0580024768.01.T01:CDS 65.0%
ATGTCCCCACCCACAGCCAG+TGG - Chr5:9438922-9438941 None:intergenic 65.0%
! TCGCTCCACTGGCTGTGGGT+GGG + Chr5:9438914-9438933 MsG0580024768.01.T01:CDS 65.0%
! TTCGCTCCACTGGCTGTGGG+TGG + Chr5:9438913-9438932 MsG0580024768.01.T01:CDS 65.0%
! CGCTCCACTGGCTGTGGGTG+GGG + Chr5:9438915-9438934 MsG0580024768.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 9437987 9441152 9437987 ID=MsG0580024768.01;Name=MsG0580024768.01
Chr5 mRNA 9437987 9441152 9437987 ID=MsG0580024768.01.T01;Parent=MsG0580024768.01;Name=MsG0580024768.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0.33|1|1|1|3|462|212
Chr5 exon 9437987 9438117 9437987 ID=MsG0580024768.01.T01:exon:26431;Parent=MsG0580024768.01.T01
Chr5 exon 9438813 9439217 9438813 ID=MsG0580024768.01.T01:exon:26432;Parent=MsG0580024768.01.T01
Chr5 exon 9440588 9441152 9440588 ID=MsG0580024768.01.T01:exon:26433;Parent=MsG0580024768.01.T01
Chr5 CDS 9437987 9438117 9437987 ID=MsG0580024768.01.T01:cds;Parent=MsG0580024768.01.T01
Chr5 CDS 9438813 9439217 9438813 ID=MsG0580024768.01.T01:cds;Parent=MsG0580024768.01.T01
Chr5 CDS 9440588 9440690 9440588 ID=MsG0580024768.01.T01:cds;Parent=MsG0580024768.01.T01
Chr5 three_prime_UTR 9440691 9441152 9440691 ID=MsG0580024768.01.T01:three_prime_utr;Parent=MsG0580024768.01.T01
Gene Sequence

>MsG0580024768.01.T01

ATGGGTGCTGGTACCACTAACCCTGAATACTTTGATTCTGAGAGACATTCAAGCTTAGAAGGTTATGCTTATGATTTACTTGCTATTTTGGAAGAGCTTCAAATTGACTCTTGCGTATTGTTGGTCATTCTGTATTTGAACGATGTGAATTACTTTGGAGGATTTGAGCAAGAAGATTTGAACCAATTATTCAACGCTATCGCTGAAAATTACAAAGCATGGTGTTATGGATTCGCTCCACTGGCTGTGGGTGGGGACATGGATTCAGTGGCAGTACAGGAGTTTAGTCGAACATTGTTCAACATGAGGCCAGACATAGCTCTAATAGTGTCACGGACAATTTTTCAAAGTGACATGAGACAAATTTTGAACCTTGTTACTGTGCCTTGTCATATTATACAAGCTGAGAAAGATATGGCGGTTCCGGTGATGGTTTCGGAGTATCTTCACCAACACTTAGGTGGTCAGTCCATTGTTGAGGTCATGCAGACTGATGGTCATTTGCCGCAGTTAAGCTCACCAGATATGTTATTCCGCTGCCAGAGAAACTACCACACTTTCCAAAATCCAGAGGCTTCATCAACAAAAACAACAAATACAGAGGCTTCATCCTTGATGAAAATGGAAGCAGATTTGTAA

Protein sequence

>MsG0580024768.01.T01

MGAGTTNPEYFDSERHSSLEGYAYDLLAILEELQIDSCVLLVILYLNDVNYFGGFEQEDLNQLFNAIAENYKAWCYGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALIVSRTIFQSDMRQILNLVTVPCHIIQAEKDMAVPVMVSEYLHQHLGGQSIVEVMQTDGHLPQLSSPDMLFRCQRNYHTFQNPEASSTKTTNTEASSLMKMEADL*