AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017590.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017590.01.T01 MTR_3g109490 82.778 360 21 3 1 357 1 322 0.0 594
MsG0380017590.01.T01 MTR_1g008500 60.574 383 123 4 1 355 1 383 1.22e-165 468
MsG0380017590.01.T01 MTR_0312s0030 56.546 359 116 7 1 355 1 323 8.45e-140 400
MsG0380017590.01.T01 MTR_1g007520 56.546 359 116 7 1 355 1 323 8.45e-140 400
MsG0380017590.01.T01 MTR_1g008590 56.825 359 115 6 1 355 1 323 3.81e-135 388
MsG0380017590.01.T01 MTR_1g008510 51.389 360 134 6 1 355 1 324 2.83e-122 355
MsG0380017590.01.T01 MTR_1g008560 48.753 361 146 7 1 355 1 328 1.79e-115 338
MsG0380017590.01.T01 MTR_1g008450 49.157 356 133 9 1 354 1 310 6.84e-110 323
MsG0380017590.01.T01 MTR_1g008470 48.451 355 124 7 1 354 1 297 4.17e-109 321
MsG0380017590.01.T01 MTR_1g008460 46.045 354 131 7 1 354 1 294 1.24e-101 302
MsG0380017590.01.T01 MTR_1g008530 60.664 211 80 1 148 355 12 222 2.84e-94 280
MsG0380017590.01.T01 MTR_1g008580 60.465 172 68 0 186 357 1 172 9.68e-77 234
MsG0380017590.01.T01 MTR_4g069680 45.536 224 115 5 139 356 64 286 1.41e-59 194
MsG0380017590.01.T01 MTR_3g116410 43.750 224 119 5 139 356 53 275 1.67e-56 186
MsG0380017590.01.T01 MTR_3g107830 43.750 224 119 4 139 356 33 255 2.94e-56 184
MsG0380017590.01.T01 MTR_3g116380 42.411 224 121 6 139 356 81 302 4.05e-53 178
MsG0380017590.01.T01 MTR_4g069570 40.367 218 122 6 145 356 120 335 2.80e-44 155
MsG0380017590.01.T01 MTR_4g069040 40.417 240 126 10 127 356 277 509 3.45e-43 157
MsG0380017590.01.T01 MTR_4g069550 40.639 219 120 7 145 356 247 462 4.33e-41 150
MsG0380017590.01.T01 MTR_3g116270 39.631 217 123 6 145 356 292 505 2.63e-40 149
MsG0380017590.01.T01 MTR_3g116320 38.710 217 125 6 145 356 474 687 3.17e-39 148
MsG0380017590.01.T01 MTR_1g008420 43.781 201 93 5 14 209 14 199 4.52e-39 138
MsG0380017590.01.T01 MTR_4g069520 38.073 218 127 7 145 356 507 722 6.34e-38 144
MsG0380017590.01.T01 MTR_4g069520 38.073 218 127 7 145 356 493 708 9.19e-38 144
MsG0380017590.01.T01 MTR_8g045880 29.891 368 215 14 9 357 7 350 1.98e-35 132
MsG0380017590.01.T01 MTR_8g046000 35.268 224 117 7 137 356 23 222 6.78e-35 128
MsG0380017590.01.T01 MTR_2g081610 33.480 227 118 5 135 357 63 260 8.12e-35 129
MsG0380017590.01.T01 MTR_8g045880 29.917 361 210 14 16 357 16 352 1.41e-34 130
MsG0380017590.01.T01 MTR_8g445170 42.105 152 81 2 206 357 240 384 9.91e-34 129
MsG0380017590.01.T01 MTR_8g045890 42.500 160 82 5 198 357 283 432 1.27e-33 129
MsG0380017590.01.T01 MTR_2g081590 32.589 224 126 4 134 357 62 260 1.68e-33 125
MsG0380017590.01.T01 MTR_8g045890 42.500 160 82 5 198 357 324 473 2.30e-33 129
MsG0380017590.01.T01 MTR_8g045890 42.500 160 82 5 198 357 361 510 3.12e-33 129
MsG0380017590.01.T01 MTR_8g445140 33.865 251 120 8 146 357 60 303 4.05e-33 125
MsG0380017590.01.T01 MTR_6g086530 35.266 207 125 7 157 356 1 205 1.45e-32 121
MsG0380017590.01.T01 MTR_8g045880 41.358 162 85 3 196 357 164 315 3.69e-32 123
MsG0380017590.01.T01 MTR_8g064500 35.160 219 126 5 145 354 159 370 5.75e-32 124
MsG0380017590.01.T01 MTR_3g078090 36.986 219 124 6 145 355 413 625 2.71e-31 125
MsG0380017590.01.T01 MTR_2g081770 33.945 218 114 8 145 357 79 271 5.82e-31 119
MsG0380017590.01.T01 MTR_8g064560 35.484 217 130 5 145 355 412 624 8.96e-31 123
MsG0380017590.01.T01 MTR_5g034320 32.870 216 137 5 145 355 415 627 1.01e-30 123
MsG0380017590.01.T01 MTR_8g064530 35.981 214 131 4 145 354 429 640 6.73e-30 120
MsG0380017590.01.T01 MTR_1g045860 33.486 218 114 6 145 357 69 260 3.59e-29 114
MsG0380017590.01.T01 MTR_8g044290 28.402 338 188 10 14 321 19 332 3.75e-28 114
MsG0380017590.01.T01 MTR_4g133840 31.746 189 110 3 169 354 14 186 4.76e-25 100
MsG0380017590.01.T01 MTR_5g033340 29.358 218 150 4 143 357 164 380 1.02e-23 101
MsG0380017590.01.T01 MTR_5g033340 31.852 135 90 2 205 338 20 153 2.18e-13 70.9
MsG0380017590.01.T01 MTR_4g068420 38.235 136 64 6 224 356 2 120 1.15e-22 92.4
MsG0380017590.01.T01 MTR_5g033330 28.837 215 149 4 143 354 403 616 3.45e-21 95.1
MsG0380017590.01.T01 MTR_5g033330 29.146 199 137 4 143 338 195 392 2.92e-17 83.6
MsG0380017590.01.T01 MTR_5g033330 27.381 168 120 2 172 338 18 184 3.31e-13 71.2
MsG0380017590.01.T01 MTR_5g033350 27.807 187 133 2 172 357 16 201 9.54e-21 89.4
MsG0380017590.01.T01 MTR_8g075930 44.000 75 38 2 274 345 14 87 1.20e-16 74.7
MsG0380017590.01.T01 MTR_5g033360 26.728 217 139 5 143 357 25 223 4.40e-16 77.0
MsG0380017590.01.T01 MTR_5g033440 32.955 88 57 2 272 357 24 111 2.09e-11 63.2
MsG0380017590.01.T01 MTR_5g033430 32.955 88 57 2 272 357 24 111 4.24e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017590.01.T01 AT5G25610 51.421 387 152 7 4 354 3 389 8.82e-126 367
MsG0380017590.01.T01 AT1G49320 37.991 229 130 6 138 355 51 278 2.26e-45 157
MsG0380017590.01.T01 AT1G60390 34.419 215 133 5 145 354 409 620 5.88e-32 127
MsG0380017590.01.T01 AT1G70370 35.648 216 131 5 145 355 411 623 2.26e-31 125
MsG0380017590.01.T01 AT1G70370 35.648 216 131 5 145 355 411 623 2.26e-31 125
MsG0380017590.01.T01 AT1G23760 32.877 219 133 6 145 355 407 619 7.99e-29 117

Find 101 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATACTGTACTAATTAATT+TGG 0.163552 3:+98200685 None:intergenic
TAGAGCAGCATTATTCTTCT+TGG 0.210808 3:-98201331 MsG0380017590.01.T01:CDS
TTTATCTATATAAGAAAGTT+TGG 0.259116 3:+98200486 None:intergenic
TTCCTGAGGATCACATTGTT+TGG 0.260914 3:-98200711 MsG0380017590.01.T01:CDS
CAGGTTTCCCCTTTCTCTTA+TGG 0.264071 3:+98201430 None:intergenic
AACATTCACTGAGGTTCCTT+TGG 0.269839 3:+98201533 None:intergenic
CTCTACCTCCTGAACTTTAC+TGG 0.286328 3:-98201868 MsG0380017590.01.T01:CDS
AGGATATCAGTTATGGCTTT+TGG 0.293944 3:+98201818 None:intergenic
TGTATTTGCAACCAAGCTTT+AGG 0.300647 3:-98204147 MsG0380017590.01.T01:five_prime_UTR
ACTTGAAAAGCAAGGTGTTT+GGG 0.310906 3:+98200775 None:intergenic
GTTCCTTTGGAGGCTGATAA+TGG 0.312970 3:-98200850 MsG0380017590.01.T01:CDS
TTATTCAAGGACGGGGTAAA+AGG 0.318604 3:+98200647 None:intergenic
TGGCAGACCGAAAGTGTTCC+TGG 0.327249 3:+98200739 None:intergenic
TCCTGAGGATCACATTGTTT+GGG 0.351762 3:-98200710 MsG0380017590.01.T01:CDS
ACATTCACTGAGGTTCCTTT+GGG 0.352599 3:+98201534 None:intergenic
AAGAGCTTATTCTGTTCCTT+TGG 0.359250 3:-98200863 MsG0380017590.01.T01:CDS
GACTTGAAAAGCAAGGTGTT+TGG 0.359862 3:+98200774 None:intergenic
AGCTTATTCTGTTCCTTTGG+AGG 0.380981 3:-98200860 MsG0380017590.01.T01:CDS
GCCACACAGATACTTCAAAA+TGG 0.382981 3:-98200801 MsG0380017590.01.T01:CDS
ATTTAATTTGCAGCTTGTAT+TGG 0.383994 3:-98201906 MsG0380017590.01.T01:intron
TGACAATAAAATATAGCATA+AGG 0.384244 3:+98200901 None:intergenic
TTCCTTTGGAGGCTGATAAT+GGG 0.385699 3:-98200849 MsG0380017590.01.T01:CDS
CACATTGAGTATCGTTAAAA+CGG 0.391410 3:+98204082 None:intergenic
TAGAAGAAGGTAGTTCATAC+TGG 0.406703 3:+98204106 None:intergenic
GGACCAACTACAACAGTTGC+AGG 0.416463 3:+98201411 None:intergenic
ATATGAGCCTCCTCTGACTC+AGG 0.426109 3:+98201162 None:intergenic
TGTGAAGATGCAGGCATTCA+AGG 0.426119 3:-98201117 MsG0380017590.01.T01:CDS
AATTAAGCCAGGAACACTTT+CGG 0.439258 3:-98200746 MsG0380017590.01.T01:CDS
ATCGACTTCCAGTAAAGTTC+AGG 0.453981 3:+98201860 None:intergenic
GAAGCTAACTGCAAGGGATA+AGG 0.466640 3:-98200950 MsG0380017590.01.T01:CDS
GACAATAAAATATAGCATAA+GGG 0.473806 3:+98200902 None:intergenic
AAAGCAGTGCAAATTATTCA+AGG 0.475657 3:+98200634 None:intergenic
AAGAAGAATAATGCTGCTCT+AGG 0.481299 3:+98201333 None:intergenic
TAAAGCTGCAACCTAAAGCT+TGG 0.485558 3:+98204136 None:intergenic
CAAGTCCTCAAAATTAAGCC+AGG 0.485589 3:-98200757 MsG0380017590.01.T01:CDS
ACCCAAACAATGTGATCCTC+AGG 0.494013 3:+98200709 None:intergenic
GCAGCATAGTTGTAAGCAAA+AGG 0.498866 3:+98201381 None:intergenic
TGCAACCTCGCTTGAATCCA+TGG 0.510614 3:-98201079 MsG0380017590.01.T01:CDS
ACATTGAGTATCGTTAAAAC+GGG 0.510823 3:+98204083 None:intergenic
AATGCAGGCCATAAGAGAAA+GGG 0.513139 3:-98201438 MsG0380017590.01.T01:CDS
AGTGCAAATTATTCAAGGAC+GGG 0.517929 3:+98200639 None:intergenic
GTGGTAGGCAACAAGAGTGC+AGG 0.518926 3:-98201006 MsG0380017590.01.T01:CDS
TGCATCTTCACATTCCTCAA+TGG 0.521273 3:+98201128 None:intergenic
GCTTGGTTGCAAATACAGCT+TGG 0.523912 3:+98204153 None:intergenic
ACCTCAGTGAATGTTGGAAA+AGG 0.526849 3:-98201525 MsG0380017590.01.T01:CDS
AATGTCAACGTTGGTGGTGG+AGG 0.529553 3:-98201471 MsG0380017590.01.T01:CDS
AAAGCACAAATGTGGGTGTA+GGG 0.529632 3:-98201590 MsG0380017590.01.T01:CDS
AAATGCAGGCCATAAGAGAA+AGG 0.530603 3:-98201439 MsG0380017590.01.T01:CDS
AAAAGCACAAATGTGGGTGT+AGG 0.540367 3:-98201591 MsG0380017590.01.T01:CDS
TAATTACTATGCAGATTGGA+TGG 0.542568 3:-98201619 MsG0380017590.01.T01:intron
CATTAGCACCTCTTCCTGCA+TGG 0.546194 3:+98201490 None:intergenic
AATACATACATAACACATCA+TGG 0.546492 3:+98200554 None:intergenic
AAGTGTTAAGGTCTTATCTA+CGG 0.555057 3:-98201028 MsG0380017590.01.T01:CDS
GTAAATGTCCATGCAGGAAG+AGG 0.558239 3:-98201498 MsG0380017590.01.T01:CDS
AAAGGAACCTCAGTGAATGT+TGG 0.559650 3:-98201531 MsG0380017590.01.T01:CDS
AAACCTGCAACTGTTGTAGT+TGG 0.560528 3:-98201414 MsG0380017590.01.T01:CDS
TCGTTAAAACGGGTAGAAGA+AGG 0.561572 3:+98204093 None:intergenic
GGAGGAGTTTCTGTAAATGC+AGG 0.562166 3:-98201453 MsG0380017590.01.T01:CDS
CTTGAAAAGCAAGGTGTTTG+GGG 0.564512 3:+98200776 None:intergenic
ATTGAGGAATGTGAAGATGC+AGG 0.566926 3:-98201126 MsG0380017590.01.T01:CDS
CTCTGTCAAACCTGAGTCAG+AGG 0.567620 3:-98201172 MsG0380017590.01.T01:CDS
GGAAGACAAAAGCACAAATG+TGG 0.569047 3:-98201598 MsG0380017590.01.T01:CDS
AGAAGAAGGTAGTTCATACT+GGG 0.569084 3:+98204107 None:intergenic
CAGTGCAAATTATTCAAGGA+CGG 0.569864 3:+98200638 None:intergenic
GCTAATGTCAACGTTGGTGG+TGG 0.571475 3:-98201474 MsG0380017590.01.T01:CDS
GGTCTGCCACTTTCTTCCTG+AGG 0.571878 3:-98200725 MsG0380017590.01.T01:CDS
ACAAATGTGGGTGTAGGGAA+AGG 0.577909 3:-98201585 MsG0380017590.01.T01:CDS
TTGTAAGCAAAAGGCGAGTG+TGG 0.579919 3:+98201390 None:intergenic
AAGGTCTTATCTACGGTGGT+AGG 0.583792 3:-98201021 MsG0380017590.01.T01:CDS
AGAAGAATAATGCTGCTCTA+GGG 0.587688 3:+98201334 None:intergenic
GACTAGAGTTAAAGCTGTAG+TGG 0.589350 3:-98200827 MsG0380017590.01.T01:CDS
GATTAATGAAGCTAACTGCA+AGG 0.590558 3:-98200957 MsG0380017590.01.T01:CDS
GGAGGTGTAAATGTCCATGC+AGG 0.591971 3:-98201504 MsG0380017590.01.T01:CDS
TCAGTGAATGTTGGAAAAGG+AGG 0.592815 3:-98201522 MsG0380017590.01.T01:CDS
AGGGTGGAGGATATCAGTTA+TGG 0.593886 3:+98201811 None:intergenic
TGTGATCCTCAGGAAGAAAG+TGG 0.602472 3:+98200719 None:intergenic
CAAAATGCTAAAATCAACCA+TGG 0.604927 3:+98201062 None:intergenic
ATTAATGAAGCTAACTGCAA+GGG 0.605328 3:-98200956 MsG0380017590.01.T01:CDS
ACATGTACTAACCAGGGTGG+AGG 0.617776 3:+98201798 None:intergenic
TATCATGAAGAATACCATTG+AGG 0.618461 3:-98201142 MsG0380017590.01.T01:CDS
GGTGCTAATGTCAACGTTGG+TGG 0.619780 3:-98201477 MsG0380017590.01.T01:CDS
ATGCAGGCCATAAGAGAAAG+GGG 0.624816 3:-98201437 MsG0380017590.01.T01:CDS
GAAGACAAAAGCACAAATGT+GGG 0.625768 3:-98201597 MsG0380017590.01.T01:CDS
GTCCCATTATCAGCCTCCAA+AGG 0.629122 3:+98200847 None:intergenic
TGTGTAATATTAATATAGTG+TGG 0.634756 3:-98200512 MsG0380017590.01.T01:three_prime_UTR
AATGTGGGTGTAGGGAAAGG+TGG 0.637127 3:-98201582 MsG0380017590.01.T01:CDS
AGATGCAGGCATTCAAGGCG+AGG 0.637625 3:-98201112 MsG0380017590.01.T01:CDS
TGGTAGGCAACAAGAGTGCA+GGG 0.638098 3:-98201005 MsG0380017590.01.T01:CDS
GACTTCCAGTAAAGTTCAGG+AGG 0.638849 3:+98201863 None:intergenic
GTGCAAATTATTCAAGGACG+GGG 0.639089 3:+98200640 None:intergenic
ATCAACCATGGATTCAAGCG+AGG 0.641476 3:+98201074 None:intergenic
TGTCAAACCTGAGTCAGAGG+AGG 0.656571 3:-98201169 MsG0380017590.01.T01:CDS
GTTGCAGACGCTACTTGTCG+AGG 0.661539 3:+98201237 None:intergenic
AGAGGTGCTAATGTCAACGT+TGG 0.663899 3:-98201480 MsG0380017590.01.T01:CDS
GATACAGACAAAGGACCCAA+AGG 0.664751 3:-98201549 MsG0380017590.01.T01:CDS
ATCATGTAATTGAGTCTCAG+TGG 0.679850 3:+98201359 None:intergenic
TGTTAAGGTCTTATCTACGG+TGG 0.697122 3:-98201025 MsG0380017590.01.T01:CDS
GTAAGTGTTGATACAGACAA+AGG 0.708640 3:-98201558 MsG0380017590.01.T01:CDS
AATACATGTACTAACCAGGG+TGG 0.721016 3:+98201795 None:intergenic
ATAACTGATATCCTCCACCC+TGG 0.725267 3:-98201809 MsG0380017590.01.T01:intron
TACTTGTCGAGGCAAGAATG+CGG 0.729595 3:+98201248 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACGTTTTAAAAAATAATAAT+AGG + Chr3:98201891-98201910 None:intergenic 10.0%
!!! CAATTCAATATTTTTTTTTT+TGG - Chr3:98200793-98200812 MsG0380017590.01.T01:CDS 10.0%
!!! CTCATTATAAATATTATTTT+AGG + Chr3:98202197-98202216 None:intergenic 10.0%
!!! TATCTTTTTTTTTTTTTTGA+AGG - Chr3:98200745-98200764 MsG0380017590.01.T01:CDS 10.0%
!!! TATTAGTTTATAATATATAG+GGG - Chr3:98202115-98202134 MsG0380017590.01.T01:intron 10.0%
!!! TATTATTTTTTAAAACGTTT+TGG - Chr3:98201893-98201912 MsG0380017590.01.T01:CDS 10.0%
!!! TATTATTTTTTTTGAAAGTA+TGG - Chr3:98202149-98202168 MsG0380017590.01.T01:intron 10.0%
!! AATTTAAAAGAATCATTGTT+CGG + Chr3:98202519-98202538 None:intergenic 15.0%
!! ATATACTGTACTAATTAATT+TGG + Chr3:98203954-98203973 None:intergenic 15.0%
!! GGAAATATATGATAAAATAA+TGG - Chr3:98201847-98201866 MsG0380017590.01.T01:CDS 15.0%
!! TAACAAAAGATTATCTTAAT+TGG + Chr3:98202949-98202968 None:intergenic 15.0%
!! TTTATCTATATAAGAAAGTT+TGG + Chr3:98204153-98204172 None:intergenic 15.0%
!!! ATTAGTTTATAATATATAGG+GGG - Chr3:98202116-98202135 MsG0380017590.01.T01:intron 15.0%
!!! ATTCTTAGTTGATAATATTA+TGG - Chr3:98200834-98200853 MsG0380017590.01.T01:CDS 15.0%
!!! GATATATTTTGTAATGTTAT+GGG - Chr3:98202255-98202274 MsG0380017590.01.T01:intron 15.0%
!!! GATTCTTTTAAATTTTATCT+CGG - Chr3:98202525-98202544 MsG0380017590.01.T01:intron 15.0%
!!! TATAATTAACTTTTGTTTAC+TGG - Chr3:98202577-98202596 MsG0380017590.01.T01:intron 15.0%
!!! TGATATATTTTGTAATGTTA+TGG - Chr3:98202254-98202273 MsG0380017590.01.T01:intron 15.0%
!!! TGCTTTTAATGATATTTTTT+TGG - Chr3:98201649-98201668 MsG0380017590.01.T01:intron 15.0%
!!! TTTATTAGACATTATTTTGT+TGG - Chr3:98201997-98202016 MsG0380017590.01.T01:intron 15.0%
!!! TTTGTAATTTAAGTTAAACA+TGG + Chr3:98202605-98202624 None:intergenic 15.0%
!! AAAAAATACACACTAAAATC+AGG - Chr3:98203657-98203676 MsG0380017590.01.T01:intron 20.0%
!! AAAAGCAAAATACAAACATA+AGG + Chr3:98201636-98201655 None:intergenic 20.0%
!! AATTATCAAACCAAATTACA+TGG - Chr3:98201286-98201305 MsG0380017590.01.T01:CDS 20.0%
!! ACGGAAATAAAAATGAAATT+AGG - Chr3:98202085-98202104 MsG0380017590.01.T01:intron 20.0%
!! ATGTTATCACAAGATTTATA+TGG + Chr3:98202041-98202060 None:intergenic 20.0%
!! ATTATAATTACTATGCAGAT+TGG - Chr3:98203013-98203032 MsG0380017590.01.T01:intron 20.0%
!! CAATTTCCTAATACAAATAA+AGG + Chr3:98200682-98200701 None:intergenic 20.0%
!! GAACTTTCATTGATATTTAA+AGG + Chr3:98201254-98201273 None:intergenic 20.0%
!! GACAATAAAATATAGCATAA+GGG + Chr3:98203737-98203756 None:intergenic 20.0%
!! GTTATGATTTAAATCAATTG+TGG - Chr3:98200877-98200896 MsG0380017590.01.T01:CDS 20.0%
!! TATTATGGTGTATGTTTAAA+AGG - Chr3:98200849-98200868 MsG0380017590.01.T01:CDS 20.0%
!! TGACAATAAAATATAGCATA+AGG + Chr3:98203738-98203757 None:intergenic 20.0%
!! TGTGTAATATTAATATAGTG+TGG - Chr3:98204124-98204143 MsG0380017590.01.T01:five_prime_UTR 20.0%
!! TTTATTAACTTAGCTCAAAA+TGG + Chr3:98202432-98202451 None:intergenic 20.0%
!!! AAAAATATGACTCAACTTTT+CGG + Chr3:98203436-98203455 None:intergenic 20.0%
!!! ATATTTTTGTTTTTGTTGAG+GGG + Chr3:98201327-98201346 None:intergenic 20.0%
!!! ATTAGTACAGTATATTTTAG+TGG - Chr3:98203959-98203978 MsG0380017590.01.T01:intron 20.0%
!!! CAAAAAATCGACTTTTAAAA+AGG + Chr3:98201923-98201942 None:intergenic 20.0%
!!! CATATTTTTGTTTTTGTTGA+GGG + Chr3:98201328-98201347 None:intergenic 20.0%
!!! CTAGTTTTAAGTAATATTTG+AGG - Chr3:98201826-98201845 MsG0380017590.01.T01:CDS 20.0%
!!! CTCATTTTAACATTTTCTTA+CGG - Chr3:98201223-98201242 MsG0380017590.01.T01:CDS 20.0%
!!! TACTAAAAATTGATTCATTG+CGG + Chr3:98201143-98201162 None:intergenic 20.0%
!!! TCATATTTTTGTTTTTGTTG+AGG + Chr3:98201329-98201348 None:intergenic 20.0%
!!! TTTTTTTTTTTGAAGGAAGT+GGG - Chr3:98200752-98200771 MsG0380017590.01.T01:CDS 20.0%
!!! TTTTTTTTTTTTGAAGGAAG+TGG - Chr3:98200751-98200770 MsG0380017590.01.T01:CDS 20.0%
! AAATATGACCTTTCTACATT+CGG - Chr3:98201341-98201360 MsG0380017590.01.T01:CDS 25.0%
! AATACATACATAACACATCA+TGG + Chr3:98204085-98204104 None:intergenic 25.0%
! TAATGATATGCCATGTAATT+TGG + Chr3:98201299-98201318 None:intergenic 25.0%
! TGATGTAGTCTATTCATTAA+TGG - Chr3:98201964-98201983 MsG0380017590.01.T01:intron 25.0%
! TGGATTGAATATAGTATGTA+GGG + Chr3:98202669-98202688 None:intergenic 25.0%
! TTGGATTGAATATAGTATGT+AGG + Chr3:98202670-98202689 None:intergenic 25.0%
!! ACTAAAAATTGATTCATTGC+GGG + Chr3:98201142-98201161 None:intergenic 25.0%
!! ATTGTTATTCTTGTTACTGT+AGG - Chr3:98200698-98200717 MsG0380017590.01.T01:exon 25.0%
!! GTTTCTCCTTTATTTGTATT+AGG - Chr3:98200673-98200692 MsG0380017590.01.T01:three_prime_UTR 25.0%
!! TTTCTTGAATTTGAAGTACA+CGG + Chr3:98202314-98202333 None:intergenic 25.0%
!! TTTTTCCCGATTTCAAAATA+CGG + Chr3:98201425-98201444 None:intergenic 25.0%
!!! AAATATTTCTCTTCAAGTTG+TGG - Chr3:98200613-98200632 MsG0380017590.01.T01:three_prime_UTR 25.0%
!!! AGAGTTTTTTTAAGCTTCAA+TGG - Chr3:98201168-98201187 MsG0380017590.01.T01:CDS 25.0%
!!! ATTTAATTTGCAGCTTGTAT+TGG - Chr3:98202730-98202749 MsG0380017590.01.T01:intron 25.0%
!!! TATTTTTGTTTTTGTTGAGG+GGG + Chr3:98201326-98201345 None:intergenic 25.0%
!!! TTAGACCATTTTGATTGTTT+GGG - Chr3:98200900-98200919 MsG0380017590.01.T01:CDS 25.0%
!!! TTGTTGTTTATGTTTTGGTT+AGG - Chr3:98200957-98200976 MsG0380017590.01.T01:CDS 25.0%
AAAGCAGTGCAAATTATTCA+AGG + Chr3:98204005-98204024 None:intergenic 30.0%
AACAATACATGTACTAACCA+GGG + Chr3:98202847-98202866 None:intergenic 30.0%
AAGAATCATTGTTCGGATTA+TGG + Chr3:98202512-98202531 None:intergenic 30.0%
AATATGACCTTTCTACATTC+GGG - Chr3:98201342-98201361 MsG0380017590.01.T01:CDS 30.0%
AGTTAAAATGACTCCGAAAT+GGG - Chr3:98202062-98202081 MsG0380017590.01.T01:intron 30.0%
ATTAATGAAGCTAACTGCAA+GGG - Chr3:98203680-98203699 MsG0380017590.01.T01:intron 30.0%
CAAAATGCTAAAATCAACCA+TGG + Chr3:98203577-98203596 None:intergenic 30.0%
GTATCAATTATCGTAAGCAT+TGG + Chr3:98202689-98202708 None:intergenic 30.0%
TAATTACTATGCAGATTGGA+TGG - Chr3:98203017-98203036 MsG0380017590.01.T01:intron 30.0%
TATCATGAAGAATACCATTG+AGG - Chr3:98203494-98203513 MsG0380017590.01.T01:intron 30.0%
TTAAAATGAGCGCAAATTGT+TGG + Chr3:98201213-98201232 None:intergenic 30.0%
! AAGTGTTAAGGTCTTATCTA+CGG - Chr3:98203608-98203627 MsG0380017590.01.T01:intron 30.0%
! ACATGTATTGTTCAAGTTCA+TGG - Chr3:98202855-98202874 MsG0380017590.01.T01:intron 30.0%
! ACATTGAGTATCGTTAAAAC+GGG + Chr3:98200556-98200575 None:intergenic 30.0%
! CACATTGAGTATCGTTAAAA+CGG + Chr3:98200557-98200576 None:intergenic 30.0%
! TTCTTGAATTTGAAGTACAC+GGG + Chr3:98202313-98202332 None:intergenic 30.0%
! TTTTCCCGATTTCAAAATAC+GGG + Chr3:98201424-98201443 None:intergenic 30.0%
!! TAGACATTATTTTGTTGGCT+TGG - Chr3:98202002-98202021 MsG0380017590.01.T01:intron 30.0%
!! TTCAAGTTCATTTTTGTTCC+AGG + Chr3:98203345-98203364 None:intergenic 30.0%
!! TTTTTATTTCCGTCCCATTT+CGG + Chr3:98202078-98202097 None:intergenic 30.0%
!!! GATTTTAGCATTTTGAAGCT+TGG - Chr3:98203582-98203601 MsG0380017590.01.T01:intron 30.0%
!!! GTTAGACCATTTTGATTGTT+TGG - Chr3:98200899-98200918 MsG0380017590.01.T01:CDS 30.0%
AAGAAGAATAATGCTGCTCT+AGG + Chr3:98203306-98203325 None:intergenic 35.0%
AAGAGCTTATTCTGTTCCTT+TGG - Chr3:98203773-98203792 MsG0380017590.01.T01:intron 35.0%
AATTAAGCCAGGAACACTTT+CGG - Chr3:98203890-98203909 MsG0380017590.01.T01:intron 35.0%
AGAAGAAGGTAGTTCATACT+GGG + Chr3:98200532-98200551 None:intergenic 35.0%
AGAAGAATAATGCTGCTCTA+GGG + Chr3:98203305-98203324 None:intergenic 35.0%
AGGGTAACGTGTAAGTATAT+GGG + Chr3:98201040-98201059 None:intergenic 35.0%
AGTGCAAATTATTCAAGGAC+GGG + Chr3:98204000-98204019 None:intergenic 35.0%
ATCATGTAATTGAGTCTCAG+TGG + Chr3:98203280-98203299 None:intergenic 35.0%
ATTCAATTTCTCATTCCCGT+TGG + Chr3:98201071-98201090 None:intergenic 35.0%
CAACACCCAAACAATCAAAA+TGG + Chr3:98200908-98200927 None:intergenic 35.0%
CAAGTTCATGGTTCATTCTA+TGG - Chr3:98202867-98202886 MsG0380017590.01.T01:intron 35.0%
CAGTGCAAATTATTCAAGGA+CGG + Chr3:98204001-98204020 None:intergenic 35.0%
CAGTTAAAATGACTCCGAAA+TGG - Chr3:98202061-98202080 MsG0380017590.01.T01:intron 35.0%
CATGGTTCATTCTATGGTAA+AGG - Chr3:98202873-98202892 MsG0380017590.01.T01:intron 35.0%
CCAAAACATAAACAACAACG+AGG + Chr3:98200955-98200974 None:intergenic 35.0%
GAACAATACATGTACTAACC+AGG + Chr3:98202848-98202867 None:intergenic 35.0%
GATTAATGAAGCTAACTGCA+AGG - Chr3:98203679-98203698 MsG0380017590.01.T01:intron 35.0%
GGTGTATGTTTAAAAGGCTT+TGG - Chr3:98200855-98200874 MsG0380017590.01.T01:CDS 35.0%
TAGAAGAAGGTAGTTCATAC+TGG + Chr3:98200533-98200552 None:intergenic 35.0%
TAGAGCAGCATTATTCTTCT+TGG - Chr3:98203305-98203324 MsG0380017590.01.T01:intron 35.0%
TAGGGTAACGTGTAAGTATA+TGG + Chr3:98201041-98201060 None:intergenic 35.0%
TGTATTTGCAACCAAGCTTT+AGG - Chr3:98200489-98200508 MsG0380017590.01.T01:three_prime_UTR 35.0%
TTCAATTTCTCATTCCCGTT+GGG + Chr3:98201070-98201089 None:intergenic 35.0%
! AAATTGATTCATTGCGGGTA+TGG + Chr3:98201137-98201156 None:intergenic 35.0%
! AATTGATTCATTGCGGGTAT+GGG + Chr3:98201136-98201155 None:intergenic 35.0%
! ACTTGAAAAGCAAGGTGTTT+GGG + Chr3:98203864-98203883 None:intergenic 35.0%
! AGGATATCAGTTATGGCTTT+TGG + Chr3:98202821-98202840 None:intergenic 35.0%
! CTCAACTTTTCGGATGAAAA+TGG + Chr3:98203426-98203445 None:intergenic 35.0%
! GAAGACAAAAGCACAAATGT+GGG - Chr3:98203039-98203058 MsG0380017590.01.T01:intron 35.0%
!! GAAGCTTGGAAAAAGTGTTA+AGG - Chr3:98203596-98203615 MsG0380017590.01.T01:intron 35.0%
!! GTAAGTGTTGATACAGACAA+AGG - Chr3:98203078-98203097 MsG0380017590.01.T01:intron 35.0%
!! TTTTGAGGACTTGAAAAGCA+AGG + Chr3:98203872-98203891 None:intergenic 35.0%
!! TTTTGATTGTTTGGGTGTTG+AGG - Chr3:98200908-98200927 MsG0380017590.01.T01:CDS 35.0%
!!! CCTCGTTGTTGTTTATGTTT+TGG - Chr3:98200952-98200971 MsG0380017590.01.T01:CDS 35.0%
!!! GTTTATGTTTTGGTTAGGCA+TGG - Chr3:98200962-98200981 MsG0380017590.01.T01:CDS 35.0%
!!! TCCATTTTGAAGTATCTGTG+TGG + Chr3:98203839-98203858 None:intergenic 35.0%
!!! TGCACATTTTTGTGTTGCTT+TGG - Chr3:98201555-98201574 MsG0380017590.01.T01:CDS 35.0%
AAAATGACTCCGAAATGGGA+CGG - Chr3:98202066-98202085 MsG0380017590.01.T01:intron 40.0%
AAACCTGCAACTGTTGTAGT+TGG - Chr3:98203222-98203241 MsG0380017590.01.T01:intron 40.0%
AAAGCACAAATGTGGGTGTA+GGG - Chr3:98203046-98203065 MsG0380017590.01.T01:intron 40.0%
AAAGGAACCTCAGTGAATGT+TGG - Chr3:98203105-98203124 MsG0380017590.01.T01:intron 40.0%
AAATGCAGGCCATAAGAGAA+AGG - Chr3:98203197-98203216 MsG0380017590.01.T01:intron 40.0%
AAATGTGCACCACCAAAACT+AGG + Chr3:98201544-98201563 None:intergenic 40.0%
AACATTCACTGAGGTTCCTT+TGG + Chr3:98203106-98203125 None:intergenic 40.0%
AATACATGTACTAACCAGGG+TGG + Chr3:98202844-98202863 None:intergenic 40.0%
AATGCAGGCCATAAGAGAAA+GGG - Chr3:98203198-98203217 MsG0380017590.01.T01:intron 40.0%
ACATTCACTGAGGTTCCTTT+GGG + Chr3:98203105-98203124 None:intergenic 40.0%
ACCTCAGTGAATGTTGGAAA+AGG - Chr3:98203111-98203130 MsG0380017590.01.T01:intron 40.0%
ACGTGTAAGTATATGGGAGT+AGG + Chr3:98201034-98201053 None:intergenic 40.0%
AGCTTATTCTGTTCCTTTGG+AGG - Chr3:98203776-98203795 MsG0380017590.01.T01:intron 40.0%
AGGCTATATAGCTAGAGAAG+TGG - Chr3:98200718-98200737 MsG0380017590.01.T01:CDS 40.0%
ATACCCAAACCCAGTCAAAT+CGG - Chr3:98201454-98201473 MsG0380017590.01.T01:CDS 40.0%
ATTGAGGAATGTGAAGATGC+AGG - Chr3:98203510-98203529 MsG0380017590.01.T01:intron 40.0%
ATTTGACTGGGTTTGGGTAT+GGG + Chr3:98201454-98201473 None:intergenic 40.0%
CAAGTCCTCAAAATTAAGCC+AGG - Chr3:98203879-98203898 MsG0380017590.01.T01:intron 40.0%
CCGATTTCAAAATACGGGTA+CGG + Chr3:98201419-98201438 None:intergenic 40.0%
CGATTTCAAAATACGGGTAC+GGG + Chr3:98201418-98201437 None:intergenic 40.0%
CGGAAATACCCAAAACCATT+GGG + Chr3:98201106-98201125 None:intergenic 40.0%
CGTGTAAGTATATGGGAGTA+GGG + Chr3:98201033-98201052 None:intergenic 40.0%
GACTAGAGTTAAAGCTGTAG+TGG - Chr3:98203809-98203828 MsG0380017590.01.T01:intron 40.0%
GCAGCATAGTTGTAAGCAAA+AGG + Chr3:98203258-98203277 None:intergenic 40.0%
GCCACACAGATACTTCAAAA+TGG - Chr3:98203835-98203854 MsG0380017590.01.T01:intron 40.0%
GGAAATACCCAAAACCATTG+GGG + Chr3:98201105-98201124 None:intergenic 40.0%
GGCTATATAGCTAGAGAAGT+GGG - Chr3:98200719-98200738 MsG0380017590.01.T01:CDS 40.0%
GTGCAAATTATTCAAGGACG+GGG + Chr3:98203999-98204018 None:intergenic 40.0%
GTGTAAGTATATGGGAGTAG+GGG + Chr3:98201032-98201051 None:intergenic 40.0%
TAAAGCTGCAACCTAAAGCT+TGG + Chr3:98200503-98200522 None:intergenic 40.0%
TCAGTGAATGTTGGAAAAGG+AGG - Chr3:98203114-98203133 MsG0380017590.01.T01:intron 40.0%
TCCTGAGGATCACATTGTTT+GGG - Chr3:98203926-98203945 MsG0380017590.01.T01:intron 40.0%
TCGTTAAAACGGGTAGAAGA+AGG + Chr3:98200546-98200565 None:intergenic 40.0%
TGCATCTTCACATTCCTCAA+TGG + Chr3:98203511-98203530 None:intergenic 40.0%
TTATTCAAGGACGGGGTAAA+AGG + Chr3:98203992-98204011 None:intergenic 40.0%
TTCCTGAGGATCACATTGTT+TGG - Chr3:98203925-98203944 MsG0380017590.01.T01:intron 40.0%
TTGGAAAAAGACTTGCATCC+TGG - Chr3:98203324-98203343 MsG0380017590.01.T01:intron 40.0%
! AAAAGCACAAATGTGGGTGT+AGG - Chr3:98203045-98203064 MsG0380017590.01.T01:intron 40.0%
! ATCGACTTCCAGTAAAGTTC+AGG + Chr3:98202779-98202798 None:intergenic 40.0%
! ATTGATTCATTGCGGGTATG+GGG + Chr3:98201135-98201154 None:intergenic 40.0%
! CTTGAAAAGCAAGGTGTTTG+GGG + Chr3:98203863-98203882 None:intergenic 40.0%
! GACTTGAAAAGCAAGGTGTT+TGG + Chr3:98203865-98203884 None:intergenic 40.0%
! GGAAGACAAAAGCACAAATG+TGG - Chr3:98203038-98203057 MsG0380017590.01.T01:intron 40.0%
! GTGTTCCTGGCTTAATTTTG+AGG + Chr3:98203887-98203906 None:intergenic 40.0%
! TCAGTTATGGCTTTTGGCAT+TGG + Chr3:98202815-98202834 None:intergenic 40.0%
! TCCTTTTCCAACATTCACTG+AGG + Chr3:98203115-98203134 None:intergenic 40.0%
! TGTTAAGGTCTTATCTACGG+TGG - Chr3:98203611-98203630 MsG0380017590.01.T01:intron 40.0%
! TTCCTTTGGAGGCTGATAAT+GGG - Chr3:98203787-98203806 MsG0380017590.01.T01:intron 40.0%
! TTTGTTGCCATGCCTAGTTT+TGG - Chr3:98201529-98201548 MsG0380017590.01.T01:CDS 40.0%
!! TTTGGTCTTGACTCTGTGAT+GGG - Chr3:98201573-98201592 MsG0380017590.01.T01:CDS 40.0%
!! TTTTGGTTAGGCATGGCAAT+GGG - Chr3:98200969-98200988 MsG0380017590.01.T01:CDS 40.0%
!!! CCGTACCCGTATTTTGAAAT+CGG - Chr3:98201416-98201435 MsG0380017590.01.T01:CDS 40.0%
!!! CGTACCCGTATTTTGAAATC+GGG - Chr3:98201417-98201436 MsG0380017590.01.T01:CDS 40.0%
AAAATCCGTCAAATCGGGGT+TGG - Chr3:98201479-98201498 MsG0380017590.01.T01:CDS 45.0%
AACCCTACCCGAATGTAGAA+AGG + Chr3:98201352-98201371 None:intergenic 45.0%
ACAAATGTGGGTGTAGGGAA+AGG - Chr3:98203051-98203070 MsG0380017590.01.T01:intron 45.0%
ACCCAAACAATGTGATCCTC+AGG + Chr3:98203930-98203949 None:intergenic 45.0%
AGGGTGGAGGATATCAGTTA+TGG + Chr3:98202828-98202847 None:intergenic 45.0%
ATAACTGATATCCTCCACCC+TGG - Chr3:98202827-98202846 MsG0380017590.01.T01:intron 45.0%
ATACCCAAAACCATTGGGGA+CGG + Chr3:98201101-98201120 None:intergenic 45.0%
ATCAACCATGGATTCAAGCG+AGG + Chr3:98203565-98203584 None:intergenic 45.0%
ATGCAGGCCATAAGAGAAAG+GGG - Chr3:98203199-98203218 MsG0380017590.01.T01:intron 45.0%
ATTCGGGTAGGGTTTGAGTA+TGG - Chr3:98201358-98201377 MsG0380017590.01.T01:CDS 45.0%
CAGGTTTCCCCTTTCTCTTA+TGG + Chr3:98203209-98203228 None:intergenic 45.0%
CTCTACCTCCTGAACTTTAC+TGG - Chr3:98202768-98202787 MsG0380017590.01.T01:intron 45.0%
GAAGCTAACTGCAAGGGATA+AGG - Chr3:98203686-98203705 MsG0380017590.01.T01:intron 45.0%
GACCTTTCTACATTCGGGTA+GGG - Chr3:98201347-98201366 MsG0380017590.01.T01:CDS 45.0%
GACTTCCAGTAAAGTTCAGG+AGG + Chr3:98202776-98202795 None:intergenic 45.0%
GATACAGACAAAGGACCCAA+AGG - Chr3:98203087-98203106 MsG0380017590.01.T01:intron 45.0%
GATTTGACTGGGTTTGGGTA+TGG + Chr3:98201455-98201474 None:intergenic 45.0%
GCGGAAATACCCAAAACCAT+TGG + Chr3:98201107-98201126 None:intergenic 45.0%
GCTTGGTTGCAAATACAGCT+TGG + Chr3:98200486-98200505 None:intergenic 45.0%
GGAGGAGTTTCTGTAAATGC+AGG - Chr3:98203183-98203202 MsG0380017590.01.T01:intron 45.0%
GTAAATGTCCATGCAGGAAG+AGG - Chr3:98203138-98203157 MsG0380017590.01.T01:intron 45.0%
GTAGGGTTTGAGTATGGGTT+CGG - Chr3:98201364-98201383 MsG0380017590.01.T01:CDS 45.0%
TACCCAAACCCAGTCAAATC+GGG - Chr3:98201455-98201474 MsG0380017590.01.T01:CDS 45.0%
TACTTGTCGAGGCAAGAATG+CGG + Chr3:98203391-98203410 None:intergenic 45.0%
TAGGGTTTGAGTATGGGTTC+GGG - Chr3:98201365-98201384 MsG0380017590.01.T01:CDS 45.0%
TCGGGGAAAATCCGTCAAAT+CGG - Chr3:98201473-98201492 MsG0380017590.01.T01:CDS 45.0%
TGACCTTTCTACATTCGGGT+AGG - Chr3:98201346-98201365 MsG0380017590.01.T01:CDS 45.0%
TGTGAAGATGCAGGCATTCA+AGG - Chr3:98203519-98203538 MsG0380017590.01.T01:intron 45.0%
TGTGATCCTCAGGAAGAAAG+TGG + Chr3:98203920-98203939 None:intergenic 45.0%
TTCAAAATACGGGTACGGGA+CGG + Chr3:98201414-98201433 None:intergenic 45.0%
TTCGGGTAGGGTTTGAGTAT+GGG - Chr3:98201359-98201378 MsG0380017590.01.T01:CDS 45.0%
TTCTCATTCCCGTTGGGTAT+GGG + Chr3:98201064-98201083 None:intergenic 45.0%
TTGTAAGCAAAAGGCGAGTG+TGG + Chr3:98203249-98203268 None:intergenic 45.0%
TTTCTCATTCCCGTTGGGTA+TGG + Chr3:98201065-98201084 None:intergenic 45.0%
TTTGGTTAGGCATGGCAATG+GGG - Chr3:98200970-98200989 MsG0380017590.01.T01:CDS 45.0%
! AAGGTCTTATCTACGGTGGT+AGG - Chr3:98203615-98203634 MsG0380017590.01.T01:intron 45.0%
! AGGAAGTGGGCAGTATCTTT+TGG - Chr3:98200765-98200784 MsG0380017590.01.T01:CDS 45.0%
! GTTCCTTTGGAGGCTGATAA+TGG - Chr3:98203786-98203805 MsG0380017590.01.T01:intron 45.0%
!! AGAGGTGCTAATGTCAACGT+TGG - Chr3:98203156-98203175 MsG0380017590.01.T01:intron 45.0%
!! CTTTGGTCTTGACTCTGTGA+TGG - Chr3:98201572-98201591 MsG0380017590.01.T01:CDS 45.0%
!! GGATTTTCCCCGATTTGACT+GGG + Chr3:98201466-98201485 None:intergenic 45.0%
!!! GTTTTGGTTAGGCATGGCAA+TGG - Chr3:98200968-98200987 MsG0380017590.01.T01:CDS 45.0%
!!! TTGGGTGTTGAGGAGTGTTT+TGG - Chr3:98200918-98200937 MsG0380017590.01.T01:CDS 45.0%
!! CAAAAAAAATAATAAAAAAT+TGG + Chr3:98202143-98202162 None:intergenic 5.0%
!!! AATATTAGTTTATAATATAT+AGG - Chr3:98202113-98202132 MsG0380017590.01.T01:intron 5.0%
!!! ATATTAGTTTATAATATATA+GGG - Chr3:98202114-98202133 MsG0380017590.01.T01:intron 5.0%
!!! TATATTATAAACTAATATTT+TGG + Chr3:98202112-98202131 None:intergenic 5.0%
AATGTGGGTGTAGGGAAAGG+TGG - Chr3:98203054-98203073 MsG0380017590.01.T01:intron 50.0%
ACATGTACTAACCAGGGTGG+AGG + Chr3:98202841-98202860 None:intergenic 50.0%
ACCCAAACCCAGTCAAATCG+GGG - Chr3:98201456-98201475 MsG0380017590.01.T01:CDS 50.0%
ACTGGGTTTGGGTATGGGTT+TGG + Chr3:98201449-98201468 None:intergenic 50.0%
AGGGTTTGAGTATGGGTTCG+GGG - Chr3:98201366-98201385 MsG0380017590.01.T01:CDS 50.0%
ATATGAGCCTCCTCTGACTC+AGG + Chr3:98203477-98203496 None:intergenic 50.0%
ATTCCCGTTGGGTATGGGTA+GGG + Chr3:98201059-98201078 None:intergenic 50.0%
CATTAGCACCTCTTCCTGCA+TGG + Chr3:98203149-98203168 None:intergenic 50.0%
CGGGGAAAATCCGTCAAATC+GGG - Chr3:98201474-98201493 MsG0380017590.01.T01:CDS 50.0%
CTCTGTCAAACCTGAGTCAG+AGG - Chr3:98203464-98203483 MsG0380017590.01.T01:intron 50.0%
CTGGGTTTGGGTATGGGTTT+GGG + Chr3:98201448-98201467 None:intergenic 50.0%
GGACCAACTACAACAGTTGC+AGG + Chr3:98203228-98203247 None:intergenic 50.0%
GGGGAAAATCCGTCAAATCG+GGG - Chr3:98201475-98201494 MsG0380017590.01.T01:CDS 50.0%
GGTGCTAATGTCAACGTTGG+TGG - Chr3:98203159-98203178 MsG0380017590.01.T01:intron 50.0%
GTATATGGGAGTAGGGGATG+AGG + Chr3:98201026-98201045 None:intergenic 50.0%
GTCCCATTATCAGCCTCCAA+AGG + Chr3:98203792-98203811 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG - Chr3:98201052-98201071 MsG0380017590.01.T01:CDS 50.0%
TACCCAAAACCATTGGGGAC+GGG + Chr3:98201100-98201119 None:intergenic 50.0%
TCAAAATACGGGTACGGGAC+GGG + Chr3:98201413-98201432 None:intergenic 50.0%
TGCAACCTCGCTTGAATCCA+TGG - Chr3:98203557-98203576 MsG0380017590.01.T01:intron 50.0%
TGCACCACCAAAACTAGGCA+TGG + Chr3:98201539-98201558 None:intergenic 50.0%
TGTCAAACCTGAGTCAGAGG+AGG - Chr3:98203467-98203486 MsG0380017590.01.T01:intron 50.0%
TTACCCTACCCATACCCAAC+GGG - Chr3:98201053-98201072 MsG0380017590.01.T01:CDS 50.0%
! CCAAACCAACCCCGATTTGA+CGG + Chr3:98201487-98201506 None:intergenic 50.0%
! GCTAATGTCAACGTTGGTGG+TGG - Chr3:98203162-98203181 MsG0380017590.01.T01:intron 50.0%
! GGAGGTGTAAATGTCCATGC+AGG - Chr3:98203132-98203151 MsG0380017590.01.T01:intron 50.0%
! TCCCCGATTTGACTGGGTTT+GGG + Chr3:98201460-98201479 None:intergenic 50.0%
! TGGTAGGCAACAAGAGTGCA+GGG - Chr3:98203631-98203650 MsG0380017590.01.T01:intron 50.0%
! TTCCCCGATTTGACTGGGTT+TGG + Chr3:98201461-98201480 None:intergenic 50.0%
!! AAATCGGGGTTGGTTTGGAC+GGG - Chr3:98201489-98201508 MsG0380017590.01.T01:CDS 50.0%
!! AATGTCAACGTTGGTGGTGG+AGG - Chr3:98203165-98203184 MsG0380017590.01.T01:intron 50.0%
!! CAAATCGGGGTTGGTTTGGA+CGG - Chr3:98201488-98201507 MsG0380017590.01.T01:CDS 50.0%
!! CGGATTTTCCCCGATTTGAC+TGG + Chr3:98201467-98201486 None:intergenic 50.0%
!!! GTTGCCATGCCTAGTTTTGG+TGG - Chr3:98201532-98201551 MsG0380017590.01.T01:CDS 50.0%
!!! TATGGCTTTTGGCATTGGCG+TGG + Chr3:98202810-98202829 None:intergenic 50.0%
AATCTCATCCCCGTCCCCAA+TGG - Chr3:98201088-98201107 MsG0380017590.01.T01:CDS 55.0%
ACCCAAAACCATTGGGGACG+GGG + Chr3:98201099-98201118 None:intergenic 55.0%
AGATGCAGGCATTCAAGGCG+AGG - Chr3:98203524-98203543 MsG0380017590.01.T01:intron 55.0%
ATGGGAGTAGGGGATGAGGA+TGG + Chr3:98201022-98201041 None:intergenic 55.0%
CATTCCCGTTGGGTATGGGT+AGG + Chr3:98201060-98201079 None:intergenic 55.0%
GCAACAAAACCCGTGCCCAT+GGG + Chr3:98201517-98201536 None:intergenic 55.0%
GTTAGGCATGGCAATGGGGT+GGG - Chr3:98200974-98200993 MsG0380017590.01.T01:CDS 55.0%
GTTGCAGACGCTACTTGTCG+AGG + Chr3:98203402-98203421 None:intergenic 55.0%
GTTTGAGTATGGGTTCGGGG+TGG - Chr3:98201369-98201388 MsG0380017590.01.T01:CDS 55.0%
TCATTGCGGGTATGGGGATG+AGG + Chr3:98201129-98201148 None:intergenic 55.0%
TGGGAGTAGGGGATGAGGAT+GGG + Chr3:98201021-98201040 None:intergenic 55.0%
! ATCCCCGTCCCCAATGGTTT+TGG - Chr3:98201094-98201113 MsG0380017590.01.T01:CDS 55.0%
! GTGGTAGGCAACAAGAGTGC+AGG - Chr3:98203630-98203649 MsG0380017590.01.T01:intron 55.0%
! TCCCCGTCCCCAATGGTTTT+GGG - Chr3:98201095-98201114 MsG0380017590.01.T01:CDS 55.0%
! TGGTTTGGACGGGTACCCAT+GGG - Chr3:98201499-98201518 MsG0380017590.01.T01:CDS 55.0%
!! CCGTCAAATCGGGGTTGGTT+TGG - Chr3:98201484-98201503 MsG0380017590.01.T01:CDS 55.0%
!! GGTCTGCCACTTTCTTCCTG+AGG - Chr3:98203911-98203930 MsG0380017590.01.T01:intron 55.0%
!! TGGCAGACCGAAAGTGTTCC+TGG + Chr3:98203900-98203919 None:intergenic 55.0%
!! TTGGTTTGGACGGGTACCCA+TGG - Chr3:98201498-98201517 MsG0380017590.01.T01:CDS 55.0%
!!! GCTTTTGGCATTGGCGTGGT+AGG + Chr3:98202806-98202825 None:intergenic 55.0%
CATGGCAATGGGGTGGGATG+GGG - Chr3:98200980-98200999 MsG0380017590.01.T01:CDS 60.0%
GCATGGCAATGGGGTGGGAT+GGG - Chr3:98200979-98200998 MsG0380017590.01.T01:CDS 60.0%
GGCAACAAAACCCGTGCCCA+TGG + Chr3:98201518-98201537 None:intergenic 60.0%
GGGAGTAGGGGATGAGGATG+GGG + Chr3:98201020-98201039 None:intergenic 60.0%
GGTTAGGCATGGCAATGGGG+TGG - Chr3:98200973-98200992 MsG0380017590.01.T01:CDS 60.0%
TACGGGTACGGGACGGGTAA+CGG + Chr3:98201407-98201426 None:intergenic 60.0%
TTGCGGGTATGGGGATGAGG+CGG + Chr3:98201126-98201145 None:intergenic 60.0%
ACGGGTACGGGACGGGTAAC+GGG + Chr3:98201406-98201425 None:intergenic 65.0%
GGCATGGCAATGGGGTGGGA+TGG - Chr3:98200978-98200997 MsG0380017590.01.T01:CDS 65.0%
TGGACGGGTACCCATGGGCA+CGG - Chr3:98201504-98201523 MsG0380017590.01.T01:CDS 65.0%
CGGGTACGGGACGGGTAACG+GGG + Chr3:98201405-98201424 None:intergenic 70.0%
GGACGGGTACCCATGGGCAC+GGG - Chr3:98201505-98201524 MsG0380017590.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98200473 98204185 98200473 ID=MsG0380017590.01;Name=MsG0380017590.01
Chr3 mRNA 98200473 98204185 98200473 ID=MsG0380017590.01.T01;Parent=MsG0380017590.01;Name=MsG0380017590.01.T01;_AED=0.49;_eAED=0.49;_QI=62|1|1|1|0.5|0.66|3|226|357
Chr3 exon 98200473 98201627 98200473 ID=MsG0380017590.01.T01:exon:4149;Parent=MsG0380017590.01.T01
Chr3 exon 98201810 98201915 98201810 ID=MsG0380017590.01.T01:exon:4148;Parent=MsG0380017590.01.T01
Chr3 exon 98204085 98204185 98204085 ID=MsG0380017590.01.T01:exon:4147;Parent=MsG0380017590.01.T01
Chr3 five_prime_UTR 98204124 98204185 98204124 ID=MsG0380017590.01.T01:five_prime_utr;Parent=MsG0380017590.01.T01
Chr3 CDS 98204085 98204123 98204085 ID=MsG0380017590.01.T01:cds;Parent=MsG0380017590.01.T01
Chr3 CDS 98201810 98201915 98201810 ID=MsG0380017590.01.T01:cds;Parent=MsG0380017590.01.T01
Chr3 CDS 98200699 98201627 98200699 ID=MsG0380017590.01.T01:cds;Parent=MsG0380017590.01.T01
Chr3 three_prime_UTR 98200473 98200698 98200473 ID=MsG0380017590.01.T01:three_prime_utr;Parent=MsG0380017590.01.T01
Gene Sequence

>MsG0380017590.01.T01

ATGAACTACCTTCTTCTACCCGTTTTAACGATACTCAATCTTGTATTGGTTGCAACTCATGCTGCTCTACCTCCTGAACTTTACTGGAAGTCGATGCTTCCTACCACGCCAATGCCAAAAGCCATAACTGATATCCTCCACCCTGATTGGATGGAAGACAAAAGCACAAATGTGGGTGTAGGGAAAGGTGGTGTAAGTGTTGATACAGACAAAGGACCCAAAGGAACCTCAGTGAATGTTGGAAAAGGAGGTGTAAATGTCCATGCAGGAAGAGGTGCTAATGTCAACGTTGGTGGTGGAGGAGTTTCTGTAAATGCAGGCCATAAGAGAAAGGGGAAACCTGCAACTGTTGTAGTTGGTCCACACTCGCCTTTTGCTTACAACTATGCTGCCACTGAGACTCAATTACATGATGACCCTAGAGCAGCATTATTCTTCTTGGAAAAAGACTTGCATCCTGGAACAAAAATGAACTTGAATTTCATTAGAAGCTCAAATGTAGCCGCATTCTTGCCTCGACAAGTAGCGTCTGCAACACCATTTTCATCCGAAAAGTTGAGTCATATTTTTAATAAGTTCTCTGTCAAACCTGAGTCAGAGGAGGCTCATATCATGAAGAATACCATTGAGGAATGTGAAGATGCAGGCATTCAAGGCGAGGAAAAATATTGTGCAACCTCGCTTGAATCCATGGTTGATTTTAGCATTTTGAAGCTTGGAAAAAGTGTTAAGGTCTTATCTACGGTGGTAGGCAACAAGAGTGCAGGGTTAAAAAAATACACACTAAAATCAGGATTAATGAAGCTAACTGCAAGGGATAAGGCTGTCGTGTGTCACAAACAAAATTACCCTTATGCTATATTTTATTGTCATAAATCAGAGAGCACAAGAGCTTATTCTGTTCCTTTGGAGGCTGATAATGGGACTAGAGTTAAAGCTGTAGTGGTATGCCACACAGATACTTCAAAATGGAACCCCAAACACCTTGCTTTTCAAGTCCTCAAAATTAAGCCAGGAACACTTTCGGTCTGCCACTTTCTTCCTGAGGATCACATTGTTTGGGTTCCAAATTAA
Protein sequence

>MsG0380017590.01.T01

MNYLLLPVLTILNLVLVATHAALPPELYWKSMLPTTPMPKAITDILHPDWMEDKSTNVGVGKGGVSVDTDKGPKGTSVNVGKGGVNVHAGRGANVNVGGGGVSVNAGHKRKGKPATVVVGPHSPFAYNYAATETQLHDDPRAALFFLEKDLHPGTKMNLNFIRSSNVAAFLPRQVASATPFSSEKLSHIFNKFSVKPESEEAHIMKNTIEECEDAGIQGEEKYCATSLESMVDFSILKLGKSVKVLSTVVGNKSAGLKKYTLKSGLMKLTARDKAVVCHKQNYPYAIFYCHKSESTRAYSVPLEADNGTRVKAVVVCHTDTSKWNPKHLAFQVLKIKPGTLSVCHFLPEDHIVWVPN*