AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018192.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018192.01.T01 MTR_4g007095 95.732 164 7 0 1 164 1 164 1.24e-113 319
MsG0480018192.01.T01 MTR_4g007090 87.805 164 20 0 1 164 1 164 6.93e-106 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018192.01.T01 AT1G80860 75.000 164 41 0 1 164 1 164 4.01e-90 260
MsG0480018192.01.T01 AT1G80860 75.000 164 41 0 1 164 1 164 4.01e-90 260

Find 56 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCTGGCTTTGATTT+TGG 0.091794 4:+1437582 None:intergenic
ATCAATAGATCCTTCAATTC+TGG 0.252976 4:+1437570 None:intergenic
AAGAGACCCTTCAAAGATTA+TGG 0.253526 4:-1437409 MsG0480018192.01.T01:CDS
GGAACTGTCCAAATGCAAAA+AGG 0.303744 4:+1437295 None:intergenic
ACTGAACTTGATAGCTTGTT+TGG 0.319333 4:+1434357 None:intergenic
TAAAATTATTTCAAGCGTTA+AGG 0.334727 4:-1434310 MsG0480018192.01.T01:three_prime_UTR
TCTACTATTACCTTTGGAAT+TGG 0.341151 4:-1437464 MsG0480018192.01.T01:CDS
TTCCATTCTACTATTACCTT+TGG 0.347080 4:-1437470 MsG0480018192.01.T01:CDS
TTTGGAACCACGGCCACATT+TGG 0.358197 4:+1434375 None:intergenic
AAAAGGGGCCAAAAGTAAAA+AGG 0.363291 4:+1437312 None:intergenic
TTCTTGTTGGACGCGAGTTT+AGG 0.379462 4:-1434398 MsG0480018192.01.T01:three_prime_UTR
CAATTGATTCAGCATGTGTT+TGG 0.385430 4:-1434495 MsG0480018192.01.T01:exon
AAGAAAGTTACCTGAAGTTA+AGG 0.394770 4:+1437274 None:intergenic
CACAAGATGTAGCTTCTTGT+TGG 0.395054 4:-1434411 MsG0480018192.01.T01:three_prime_UTR
GATGACGCCGAAAGGGAATT+CGG 0.405825 4:+1434667 None:intergenic
TTGGACAGTTCCTTAACTTC+AGG 0.406977 4:-1437284 MsG0480018192.01.T01:intron
AAAATCAAAGCCAGAATTGA+AGG 0.415530 4:-1437580 MsG0480018192.01.T01:five_prime_UTR
GTCTTGTTGCATGCATTTCA+TGG 0.416231 4:-1434613 MsG0480018192.01.T01:CDS
TTTGGAATTGGCCACAATCA+TGG 0.439389 4:-1437452 MsG0480018192.01.T01:CDS
GGTGAACCCGGCACGTACTA+CGG 0.441291 4:-1434722 MsG0480018192.01.T01:CDS
AGGTAATAGTAGAATGGAAA+TGG 0.454712 4:+1437474 None:intergenic
TGGGTTGATTTCTGTGGTAA+AGG 0.470210 4:-1437432 MsG0480018192.01.T01:CDS
TTGGAATTGGCCACAATCAT+GGG 0.480101 4:-1437451 MsG0480018192.01.T01:CDS
TGGGTAACCGAATTCCCTTT+CGG 0.483152 4:-1434674 MsG0480018192.01.T01:CDS
TTCCAAAGGTAATAGTAGAA+TGG 0.492104 4:+1437468 None:intergenic
ACATAAGCCATAATCTTTGA+AGG 0.496602 4:+1437402 None:intergenic
CACAGGAGGATGTACTGAAA+AGG 0.503339 4:+1434587 None:intergenic
TTTGATCCTTTGTGGAAAAG+AGG 0.508643 4:+1437606 None:intergenic
GACAGGGTTTATCAGCTGCT+TGG 0.514598 4:-1434743 MsG0480018192.01.T01:intron
TCTTGTTGCATGCATTTCAT+GGG 0.516952 4:-1434612 MsG0480018192.01.T01:CDS
ACGTACTACGGTGTACGCTT+TGG 0.517896 4:-1434710 MsG0480018192.01.T01:CDS
TTGATCCTTTGTGGAAAAGA+GGG 0.529871 4:+1437607 None:intergenic
TATCAGCTGCTTGGTGAACC+CGG 0.533558 4:-1434734 MsG0480018192.01.T01:CDS
GATCACTGATGACGCCGAAA+GGG 0.542583 4:+1434660 None:intergenic
GCTGAATCAATTGAGTGGCT+TGG 0.543638 4:+1434505 None:intergenic
GTTTAGGCCAAATGTGGCCG+TGG 0.548256 4:-1434382 MsG0480018192.01.T01:three_prime_UTR
AAAATTAAGAAATCAAATGA+GGG 0.556523 4:-1434219 MsG0480018192.01.T01:three_prime_UTR
TGATAGCTTGTTTGGAACCA+CGG 0.558931 4:+1434365 None:intergenic
CAACAAGAAGCTACATCTTG+TGG 0.560048 4:+1434412 None:intergenic
GGATCACTGATGACGCCGAA+AGG 0.568021 4:+1434659 None:intergenic
TATGATGCACGTGGAGTCGA+AGG 0.579407 4:-1434546 MsG0480018192.01.T01:CDS
ATCAGTGATCCTCAGTATGT+CGG 0.592522 4:-1434647 MsG0480018192.01.T01:CDS
CATAAGCCATAATCTTTGAA+GGG 0.594358 4:+1437403 None:intergenic
CAATCATGGGTTGATTTCTG+TGG 0.597484 4:-1437438 MsG0480018192.01.T01:CDS
AAAGGGAATTCGGTTACCCA+TGG 0.609636 4:+1434677 None:intergenic
ACACATATCCTAAAATCCAC+AGG 0.612366 4:+1434570 None:intergenic
ACGCGAGTTTAGGCCAAATG+TGG 0.613292 4:-1434388 MsG0480018192.01.T01:three_prime_UTR
ATGATTGTGGCCAATTCCAA+AGG 0.614166 4:+1437454 None:intergenic
CAGAAATCAACCCATGATTG+TGG 0.620811 4:+1437441 None:intergenic
GCGTACACCGTAGTACGTGC+CGG 0.622625 4:+1434715 None:intergenic
CGTACACCGTAGTACGTGCC+GGG 0.630869 4:+1434716 None:intergenic
ATGATGCTGCCGACATACTG+AGG 0.631811 4:+1434638 None:intergenic
CACATGCTGAATCAATTGAG+TGG 0.661473 4:+1434500 None:intergenic
AAATTAAGAAATCAAATGAG+GGG 0.683127 4:-1434218 MsG0480018192.01.T01:three_prime_UTR
CATATCCTAAAATCCACAGG+AGG 0.712348 4:+1434573 None:intergenic
ATATGTGTTTATGATGCACG+TGG 0.741552 4:-1434555 MsG0480018192.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAAAATTAAATAAA+AGG + Chr4:1434688-1434707 None:intergenic 0.0%
!!! AAATTTGTTGTTATAATATT+TGG - Chr4:1435310-1435329 MsG0480018192.01.T01:intron 10.0%
!!! AATATTAGTATGTTTTAATT+TGG - Chr4:1436768-1436787 MsG0480018192.01.T01:intron 10.0%
!!! AATTTTTATATAATGCTATA+TGG - Chr4:1434695-1434714 MsG0480018192.01.T01:CDS 10.0%
!!! ATATTAGTATGTTTTAATTT+GGG - Chr4:1436769-1436788 MsG0480018192.01.T01:intron 10.0%
!! AAAAATTAAGAAATCAAATG+AGG - Chr4:1437638-1437657 MsG0480018192.01.T01:five_prime_UTR 15.0%
!! AAAACATTTCATAGTTTATT+TGG + Chr4:1436847-1436866 None:intergenic 15.0%
!! AAAATTAAGAAATCAAATGA+GGG - Chr4:1437639-1437658 MsG0480018192.01.T01:five_prime_UTR 15.0%
!! AAAGTAAAATGATATATGTT+TGG + Chr4:1435986-1436005 None:intergenic 15.0%
!! TTATAACTTTAGTTAATTCA+AGG - Chr4:1436602-1436621 MsG0480018192.01.T01:intron 15.0%
!!! AAACTATCATTATTTTTTTG+AGG - Chr4:1437587-1437606 MsG0480018192.01.T01:five_prime_UTR 15.0%
!!! AACTATCATTATTTTTTTGA+GGG - Chr4:1437588-1437607 MsG0480018192.01.T01:five_prime_UTR 15.0%
!!! ATAAGTTTGTTCTTTTTATT+TGG - Chr4:1436069-1436088 MsG0480018192.01.T01:intron 15.0%
!!! GATTTTTTTACTCAAAATTA+TGG - Chr4:1435170-1435189 MsG0480018192.01.T01:intron 15.0%
!!! TTTTCATTTTTTGTACTTTT+TGG - Chr4:1434606-1434625 MsG0480018192.01.T01:CDS 15.0%
!! AAAAATCAACTTAATGTCTT+TGG + Chr4:1435816-1435835 None:intergenic 20.0%
!! AAATTAAGAAATCAAATGAG+GGG - Chr4:1437640-1437659 MsG0480018192.01.T01:five_prime_UTR 20.0%
!! AATGATAGTTTACACAAAAA+AGG + Chr4:1437578-1437597 None:intergenic 20.0%
!! AGCAATACAGTTAAAAATTA+AGG + Chr4:1437056-1437075 None:intergenic 20.0%
!! CTAATATCATAGAAAATGAA+AGG + Chr4:1435747-1435766 None:intergenic 20.0%
!! GATTCTTCATTTATTATTCT+GGG + Chr4:1436889-1436908 None:intergenic 20.0%
!! TAAAATTATTTCAAGCGTTA+AGG - Chr4:1437548-1437567 MsG0480018192.01.T01:five_prime_UTR 20.0%
!! TGATTCTTCATTTATTATTC+TGG + Chr4:1436890-1436909 None:intergenic 20.0%
!! TTGAGTAAAAAAATCATGTT+TGG + Chr4:1435165-1435184 None:intergenic 20.0%
!!! AAAAGCAAAGATTTTTTTAG+AGG - Chr4:1434322-1434341 MsG0480018192.01.T01:three_prime_UTR 20.0%
!!! AAAGACATTAAGTTGATTTT+TGG - Chr4:1435815-1435834 MsG0480018192.01.T01:intron 20.0%
!!! ACTATCATTATTTTTTTGAG+GGG - Chr4:1437589-1437608 MsG0480018192.01.T01:five_prime_UTR 20.0%
!!! CAATGATGTTTTTGTAATTT+CGG + Chr4:1436516-1436535 None:intergenic 20.0%
!!! CTTTCATTTTCTATGATATT+AGG - Chr4:1435745-1435764 MsG0480018192.01.T01:intron 20.0%
!!! TAATTTTTAACTGTATTGCT+TGG - Chr4:1437056-1437075 MsG0480018192.01.T01:intron 20.0%
!!! TTTAGTTTTATAATCCCTAT+TGG - Chr4:1434770-1434789 MsG0480018192.01.T01:intron 20.0%
!!! TTTTTGTAATTTCGGTATAT+AGG + Chr4:1436508-1436527 None:intergenic 20.0%
! AATTCATAACACTGAGATTT+AGG - Chr4:1435600-1435619 MsG0480018192.01.T01:intron 25.0%
! ACAACAAATTTAGTTGTGTT+TGG + Chr4:1435301-1435320 None:intergenic 25.0%
! ACAATGTGATCATTATGATT+AGG + Chr4:1437090-1437109 None:intergenic 25.0%
! ACGAATTTAATTAGATCCTT+TGG - Chr4:1436380-1436399 MsG0480018192.01.T01:intron 25.0%
! AGTGTAAAATTCACAATTTG+AGG + Chr4:1435926-1435945 None:intergenic 25.0%
! ATGATGAAATGATAGTATTG+AGG - Chr4:1436092-1436111 MsG0480018192.01.T01:intron 25.0%
! GATATTAGGATTAGAAAAGA+AGG - Chr4:1435759-1435778 MsG0480018192.01.T01:intron 25.0%
! GTGTATAATTCAGATCTTAA+AGG - Chr4:1436145-1436164 MsG0480018192.01.T01:intron 25.0%
! TAGTTAATTCAAGGACTATA+GGG - Chr4:1436611-1436630 MsG0480018192.01.T01:intron 25.0%
! TATAATCCCTATTGGATATT+AGG - Chr4:1434778-1434797 MsG0480018192.01.T01:intron 25.0%
! TCTTATCCTAATATCCAATA+GGG + Chr4:1434787-1434806 None:intergenic 25.0%
! TTAGTTAATTCAAGGACTAT+AGG - Chr4:1436610-1436629 MsG0480018192.01.T01:intron 25.0%
! TTATGTGTTTAATTCTACAG+TGG + Chr4:1436053-1436072 None:intergenic 25.0%
! TTCTTATCCTAATATCCAAT+AGG + Chr4:1434788-1434807 None:intergenic 25.0%
! TTGGATATTAGGATAAGAAA+AGG - Chr4:1434789-1434808 MsG0480018192.01.T01:intron 25.0%
! TTTCGTTAAAAGTGAGTTTA+AGG + Chr4:1435241-1435260 None:intergenic 25.0%
!! AAGAAGATATCCGTATTTTA+TGG - Chr4:1436287-1436306 MsG0480018192.01.T01:intron 25.0%
!! AATTCACAATTTGAGGTAAA+AGG + Chr4:1435919-1435938 None:intergenic 25.0%
!! ACATAAAAGTTATGTTTTCC+AGG + Chr4:1436723-1436742 None:intergenic 25.0%
!! CATAAAAGTTATGTTTTCCA+GGG + Chr4:1436722-1436741 None:intergenic 25.0%
!!! ATTTTTTTAGAGGAATCTGA+TGG - Chr4:1434332-1434351 MsG0480018192.01.T01:three_prime_UTR 25.0%
!!! TTTTGTACTTTTTGGTTTCT+GGG - Chr4:1434614-1434633 MsG0480018192.01.T01:CDS 25.0%
!!! TTTTTGTACTTTTTGGTTTC+TGG - Chr4:1434613-1434632 MsG0480018192.01.T01:CDS 25.0%
!!! TTTTTTTAGAGGAATCTGAT+GGG - Chr4:1434333-1434352 MsG0480018192.01.T01:three_prime_UTR 25.0%
AAAATCAAAGCCAGAATTGA+AGG - Chr4:1434278-1434297 MsG0480018192.01.T01:three_prime_UTR 30.0%
AAAATTAAGCCAATCCAAAC+AGG - Chr4:1435014-1435033 MsG0480018192.01.T01:intron 30.0%
AAGAAAGTTACCTGAAGTTA+AGG + Chr4:1434587-1434606 None:intergenic 30.0%
AATTCATATGTTCTCGCTAA+CGG - Chr4:1434890-1434909 MsG0480018192.01.T01:intron 30.0%
AATTTGTGGATCTTGTAATG+GGG - Chr4:1434646-1434665 MsG0480018192.01.T01:CDS 30.0%
ACATAAGCCATAATCTTTGA+AGG + Chr4:1434459-1434478 None:intergenic 30.0%
ACATCACAGTTTCATCAAAA+CGG + Chr4:1436928-1436947 None:intergenic 30.0%
AGGATAAGAAAAGGAGATTT+AGG - Chr4:1434798-1434817 MsG0480018192.01.T01:intron 30.0%
AGGTAATAGTAGAATGGAAA+TGG + Chr4:1434387-1434406 None:intergenic 30.0%
ATCAATAGATCCTTCAATTC+TGG + Chr4:1434291-1434310 None:intergenic 30.0%
ATGATTGCAGCTTGAAAATT+AGG - Chr4:1435879-1435898 MsG0480018192.01.T01:intron 30.0%
CAACTCCAAACCATAAAATA+CGG + Chr4:1436300-1436319 None:intergenic 30.0%
CATAAGCCATAATCTTTGAA+GGG + Chr4:1434458-1434477 None:intergenic 30.0%
CGATATATTTGACAGATTCA+TGG + Chr4:1435459-1435478 None:intergenic 30.0%
GAATTTGTGGATCTTGTAAT+GGG - Chr4:1434645-1434664 MsG0480018192.01.T01:CDS 30.0%
GGATAAGAAAAGGAGATTTA+GGG - Chr4:1434799-1434818 MsG0480018192.01.T01:intron 30.0%
GTGTACACATTAGATCTTAA+AGG - Chr4:1435496-1435515 MsG0480018192.01.T01:intron 30.0%
TAAGGCTCAATGAGAATATT+CGG + Chr4:1437038-1437057 None:intergenic 30.0%
TACAGTGGTGAAAATTGATT+AGG + Chr4:1436038-1436057 None:intergenic 30.0%
TCTCAATTTGATATGCTAAC+TGG - Chr4:1435565-1435584 MsG0480018192.01.T01:intron 30.0%
TGAATGTATCCTCTATTAGT+TGG + Chr4:1436573-1436592 None:intergenic 30.0%
TGAATTTGTGGATCTTGTAA+TGG - Chr4:1434644-1434663 MsG0480018192.01.T01:CDS 30.0%
TTCCAAAGGTAATAGTAGAA+TGG + Chr4:1434393-1434412 None:intergenic 30.0%
TTCCATTCTACTATTACCTT+TGG - Chr4:1434388-1434407 MsG0480018192.01.T01:three_prime_UTR 30.0%
! ATTTTGGATTTGATCCTTTG+TGG + Chr4:1434263-1434282 None:intergenic 30.0%
! GATATCCGTATTTTATGGTT+TGG - Chr4:1436292-1436311 MsG0480018192.01.T01:intron 30.0%
! TGTTTGGTAGTAATGTAGAA+AGG + Chr4:1436682-1436701 None:intergenic 30.0%
! TTTCTGTCTCTTCTTTTCAT+TGG - Chr4:1434517-1434536 MsG0480018192.01.T01:CDS 30.0%
!! ATTTTGGTCCTTAAATGTGT+CGG + Chr4:1436644-1436663 None:intergenic 30.0%
!! CACTTTTGAAGATACAATGA+CGG + Chr4:1437004-1437023 None:intergenic 30.0%
!! TCTACTATTACCTTTGGAAT+TGG - Chr4:1434394-1434413 MsG0480018192.01.T01:three_prime_UTR 30.0%
!! TTTTGAGTGAACACTCATTT+TGG - Chr4:1436449-1436468 MsG0480018192.01.T01:intron 30.0%
!!! AGTTGATTTTTGGTATGTTC+AGG - Chr4:1435825-1435844 MsG0480018192.01.T01:intron 30.0%
!!! GAAAGGAGTAAGTGTTATTT+TGG + Chr4:1436660-1436679 None:intergenic 30.0%
!!! GTTGATTTTTGGTATGTTCA+GGG - Chr4:1435826-1435845 MsG0480018192.01.T01:intron 30.0%
!!! TTCAATTCTGGCTTTGATTT+TGG + Chr4:1434279-1434298 None:intergenic 30.0%
AAAAGGGGCCAAAAGTAAAA+AGG + Chr4:1434549-1434568 None:intergenic 35.0%
AACTGTCCAAATGCAAAAAG+GGG + Chr4:1434564-1434583 None:intergenic 35.0%
AAGAGACCCTTCAAAGATTA+TGG - Chr4:1434449-1434468 MsG0480018192.01.T01:three_prime_UTR 35.0%
AAGGCTCAATGAGAATATTC+GGG + Chr4:1437037-1437056 None:intergenic 35.0%
AATTATACACCACAGCAAAG+TGG + Chr4:1436135-1436154 None:intergenic 35.0%
ACACATATCCTAAAATCCAC+AGG + Chr4:1437291-1437310 None:intergenic 35.0%
AGGCGAAATCAATTCGAATT+AGG + Chr4:1435854-1435873 None:intergenic 35.0%
AGTAGTGAGTAGCGAATAAT+GGG - Chr4:1435704-1435723 MsG0480018192.01.T01:intron 35.0%
ATATGTGTTTATGATGCACG+TGG - Chr4:1437303-1437322 MsG0480018192.01.T01:CDS 35.0%
ATGGTGTATCACAATGATTG+TGG + Chr4:1435440-1435459 None:intergenic 35.0%
ATTATACACCACAGCAAAGT+GGG + Chr4:1436134-1436153 None:intergenic 35.0%
ATTTACACCATTGCACCAAT+CGG + Chr4:1436232-1436251 None:intergenic 35.0%
CAACTCAGAATCAATTGTAG+CGG + Chr4:1435117-1435136 None:intergenic 35.0%
CAATTTGATATGCTAACTGG+TGG - Chr4:1435568-1435587 MsG0480018192.01.T01:intron 35.0%
GAACTGTCCAAATGCAAAAA+GGG + Chr4:1434565-1434584 None:intergenic 35.0%
GAGAATATCACAATTGCAGA+AGG - Chr4:1436407-1436426 MsG0480018192.01.T01:intron 35.0%
GATCACATTGTCAAATGACA+GGG - Chr4:1437099-1437118 MsG0480018192.01.T01:intron 35.0%
GCTTTCTTGGTAAGATTGTT+TGG + Chr4:1436698-1436717 None:intergenic 35.0%
GGTAGTAATGTAGAAAGGAA+AGG + Chr4:1436677-1436696 None:intergenic 35.0%
TCAAGCTGCAATCATTCTAA+AGG + Chr4:1435874-1435893 None:intergenic 35.0%
TCATAACACTGAGATTTAGG+CGG - Chr4:1435603-1435622 MsG0480018192.01.T01:intron 35.0%
TCTCAATTTGATATGCCGAT+TGG - Chr4:1436214-1436233 MsG0480018192.01.T01:intron 35.0%
TCTTGTTGCATGCATTTCAT+GGG - Chr4:1437246-1437265 MsG0480018192.01.T01:intron 35.0%
TGATCACATTGTCAAATGAC+AGG - Chr4:1437098-1437117 MsG0480018192.01.T01:intron 35.0%
TTGATCCTTTGTGGAAAAGA+GGG + Chr4:1434254-1434273 None:intergenic 35.0%
TTTGATCCTTTGTGGAAAAG+AGG + Chr4:1434255-1434274 None:intergenic 35.0%
! AATGCTATATGGTGCTGAAT+TGG - Chr4:1434706-1434725 MsG0480018192.01.T01:CDS 35.0%
! AGTTGATATGTCTGTGTTCT+TGG - Chr4:1436315-1436334 MsG0480018192.01.T01:intron 35.0%
! AGTTGTGTTTGGTTCAAATG+TGG + Chr4:1435290-1435309 None:intergenic 35.0%
! CAATTGATTCAGCATGTGTT+TGG - Chr4:1437363-1437382 MsG0480018192.01.T01:CDS 35.0%
! CTACAATTGATTCTGAGTTG+AGG - Chr4:1435117-1435136 MsG0480018192.01.T01:intron 35.0%
! CTTTGGAAAAACTCTTCCAT+GGG - Chr4:1437165-1437184 MsG0480018192.01.T01:intron 35.0%
! TATCCTCTATTAGTTGGCTT+GGG + Chr4:1436567-1436586 None:intergenic 35.0%
! TCAATGCTTGGATTCACTTT+TGG - Chr4:1435043-1435062 MsG0480018192.01.T01:intron 35.0%
! TTTTGGTCCTTAAATGTGTC+GGG + Chr4:1436643-1436662 None:intergenic 35.0%
!! ACTGAACTTGATAGCTTGTT+TGG + Chr4:1437504-1437523 None:intergenic 35.0%
!! ATGGGTATTTTTGCTGCTAT+TGG - Chr4:1434351-1434370 MsG0480018192.01.T01:three_prime_UTR 35.0%
!! TTTTGAAGATACAATGACGG+AGG + Chr4:1437001-1437020 None:intergenic 35.0%
!!! CTGGGTTTTGTTTGAATTTG+TGG - Chr4:1434632-1434651 MsG0480018192.01.T01:CDS 35.0%
AACAGGCTTAAGTCAATGCT+TGG - Chr4:1435031-1435050 MsG0480018192.01.T01:intron 40.0%
AGAAATCAAATGAGGGGTTG+TGG - Chr4:1437646-1437665 MsG0480018192.01.T01:five_prime_UTR 40.0%
ATCAGTGATCCTCAGTATGT+CGG - Chr4:1437211-1437230 MsG0480018192.01.T01:intron 40.0%
ATGATTGTGGCCAATTCCAA+AGG + Chr4:1434407-1434426 None:intergenic 40.0%
CAAAACGGTGGTATTCATCT+TGG + Chr4:1436913-1436932 None:intergenic 40.0%
CAACAAGAAGCTACATCTTG+TGG + Chr4:1437449-1437468 None:intergenic 40.0%
CACAAGATGTAGCTTCTTGT+TGG - Chr4:1437447-1437466 MsG0480018192.01.T01:CDS 40.0%
CACATGCTGAATCAATTGAG+TGG + Chr4:1437361-1437380 None:intergenic 40.0%
CAGAAATCAACCCATGATTG+TGG + Chr4:1434420-1434439 None:intergenic 40.0%
CATATCCTAAAATCCACAGG+AGG + Chr4:1437288-1437307 None:intergenic 40.0%
GAGTAGTGAGTAGCGAATAA+TGG - Chr4:1435703-1435722 MsG0480018192.01.T01:intron 40.0%
GATATCCTGATGCCATGATA+CGG - Chr4:1435643-1435662 MsG0480018192.01.T01:intron 40.0%
GGAACTGTCCAAATGCAAAA+AGG + Chr4:1434566-1434585 None:intergenic 40.0%
GTAGTGAGTAGCGAATAATG+GGG - Chr4:1435705-1435724 MsG0480018192.01.T01:intron 40.0%
GTATCCTCTATTAGTTGGCT+TGG + Chr4:1436568-1436587 None:intergenic 40.0%
TCACAGTTTCATCAAAACGG+TGG + Chr4:1436925-1436944 None:intergenic 40.0%
TGACTTAAGCCTGTTTGGAT+TGG + Chr4:1435026-1435045 None:intergenic 40.0%
TGCATAGAAACTCCGTATCA+TGG + Chr4:1435658-1435677 None:intergenic 40.0%
TGGTTCTTACGTGTATGAAG+TGG - Chr4:1436469-1436488 MsG0480018192.01.T01:intron 40.0%
TTATACACCACAGCAAAGTG+GGG + Chr4:1436133-1436152 None:intergenic 40.0%
TTGGAATTGGCCACAATCAT+GGG - Chr4:1434407-1434426 MsG0480018192.01.T01:three_prime_UTR 40.0%
TTGGACAGTTCCTTAACTTC+AGG - Chr4:1434574-1434593 MsG0480018192.01.T01:CDS 40.0%
! AAGGAGATTTAGGGTCTGTT+TGG - Chr4:1434808-1434827 MsG0480018192.01.T01:intron 40.0%
! GTCTTGTTGCATGCATTTCA+TGG - Chr4:1437245-1437264 MsG0480018192.01.T01:intron 40.0%
! TACATCCTCCTGTGGATTTT+AGG - Chr4:1437280-1437299 MsG0480018192.01.T01:intron 40.0%
! TGATTTGCAGAATGAACTGC+AGG + Chr4:1436819-1436838 None:intergenic 40.0%
! TGTAACCCTCTTTTCCACAA+AGG - Chr4:1434246-1434265 MsG0480018192.01.T01:three_prime_UTR 40.0%
! TTTGGAATTGGCCACAATCA+TGG - Chr4:1434406-1434425 MsG0480018192.01.T01:three_prime_UTR 40.0%
! TTTTGGCCCCTTTTTGCATT+TGG - Chr4:1434555-1434574 MsG0480018192.01.T01:CDS 40.0%
!! AGCATTGACTTAAGCCTGTT+TGG + Chr4:1435031-1435050 None:intergenic 40.0%
!! CAATCATGGGTTGATTTCTG+TGG - Chr4:1434420-1434439 MsG0480018192.01.T01:three_prime_UTR 40.0%
!! GCTTTGGAAAAACTCTTCCA+TGG - Chr4:1437164-1437183 MsG0480018192.01.T01:intron 40.0%
!! TGATAGCTTGTTTGGAACCA+CGG + Chr4:1437496-1437515 None:intergenic 40.0%
!! TGGGTTGATTTCTGTGGTAA+AGG - Chr4:1434426-1434445 MsG0480018192.01.T01:three_prime_UTR 40.0%
AAACTCCGTATCATGGCATC+AGG + Chr4:1435651-1435670 None:intergenic 45.0%
AAAGGGAATTCGGTTACCCA+TGG + Chr4:1437184-1437203 None:intergenic 45.0%
AGGGGCCAAAAGTAAAAAGG+AGG + Chr4:1434546-1434565 None:intergenic 45.0%
ATACTTTCCCCACTTTGCTG+TGG - Chr4:1436123-1436142 MsG0480018192.01.T01:intron 45.0%
CACAGGAGGATGTACTGAAA+AGG + Chr4:1437274-1437293 None:intergenic 45.0%
CTCGAGACGCAAAAATCAAG+AGG + Chr4:1437400-1437419 None:intergenic 45.0%
GCTGAATCAATTGAGTGGCT+TGG + Chr4:1437356-1437375 None:intergenic 45.0%
GGCCAAAAGTAAAAAGGAGG+AGG + Chr4:1434543-1434562 None:intergenic 45.0%
GTTAGTGCCCGACACATTTA+AGG - Chr4:1436633-1436652 MsG0480018192.01.T01:intron 45.0%
TCGATACATGCACGTGAAAG+TGG + Chr4:1435202-1435221 None:intergenic 45.0%
TGACCCAAGCCAACTAATAG+AGG - Chr4:1436561-1436580 MsG0480018192.01.T01:intron 45.0%
TGGGTAACCGAATTCCCTTT+CGG - Chr4:1437184-1437203 MsG0480018192.01.T01:intron 45.0%
TGTGATATTCTCGCAGCCAA+AGG + Chr4:1436399-1436418 None:intergenic 45.0%
TTCTTGTTGGACGCGAGTTT+AGG - Chr4:1437460-1437479 MsG0480018192.01.T01:CDS 45.0%
! CTCTTGATTTTTGCGTCTCG+AGG - Chr4:1437398-1437417 MsG0480018192.01.T01:CDS 45.0%
! CTTTTCAGTACATCCTCCTG+TGG - Chr4:1437272-1437291 MsG0480018192.01.T01:intron 45.0%
! GCTATATGGTGCTGAATTGG+AGG - Chr4:1434709-1434728 MsG0480018192.01.T01:CDS 45.0%
! GGCCTCCTCCTTTTTACTTT+TGG - Chr4:1434538-1434557 MsG0480018192.01.T01:CDS 45.0%
! TGATATGCCGATTGGTGCAA+TGG - Chr4:1436222-1436241 MsG0480018192.01.T01:intron 45.0%
!! ATCTTACCAAGAAAGCACCC+TGG - Chr4:1436702-1436721 MsG0480018192.01.T01:intron 45.0%
!! TGTTTTCCAGGGTGCTTTCT+TGG + Chr4:1436711-1436730 None:intergenic 45.0%
ACGCGAGTTTAGGCCAAATG+TGG - Chr4:1437470-1437489 MsG0480018192.01.T01:CDS 50.0%
ACGTACTACGGTGTACGCTT+TGG - Chr4:1437148-1437167 MsG0480018192.01.T01:intron 50.0%
ATGATGCTGCCGACATACTG+AGG + Chr4:1437223-1437242 None:intergenic 50.0%
GACAGGGTTTATCAGCTGCT+TGG - Chr4:1437115-1437134 MsG0480018192.01.T01:intron 50.0%
GATGACGCCGAAAGGGAATT+CGG + Chr4:1437194-1437213 None:intergenic 50.0%
TATGATGCACGTGGAGTCGA+AGG - Chr4:1437312-1437331 MsG0480018192.01.T01:CDS 50.0%
! GATCACTGATGACGCCGAAA+GGG + Chr4:1437201-1437220 None:intergenic 50.0%
! TATCAGCTGCTTGGTGAACC+CGG - Chr4:1437124-1437143 MsG0480018192.01.T01:intron 50.0%
! TTTGGAACCACGGCCACATT+TGG + Chr4:1437486-1437505 None:intergenic 50.0%
GTTTAGGCCAAATGTGGCCG+TGG - Chr4:1437476-1437495 MsG0480018192.01.T01:CDS 55.0%
TGCAGGTAGCAGTCTCTTGC+TGG + Chr4:1436802-1436821 None:intergenic 55.0%
! GGATCACTGATGACGCCGAA+AGG + Chr4:1437202-1437221 None:intergenic 55.0%
CGTACACCGTAGTACGTGCC+GGG + Chr4:1437145-1437164 None:intergenic 60.0%
GCGTACACCGTAGTACGTGC+CGG + Chr4:1437146-1437165 None:intergenic 60.0%
GGTGAACCCGGCACGTACTA+CGG - Chr4:1437136-1437155 MsG0480018192.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1434213 1437667 1434213 ID=MsG0480018192.01;Name=MsG0480018192.01
Chr4 mRNA 1434213 1437667 1434213 ID=MsG0480018192.01.T01;Parent=MsG0480018192.01;Name=MsG0480018192.01.T01;_AED=0.45;_eAED=0.45;_QI=138|1|1|1|1|1|2|298|164
Chr4 exon 1434213 1434760 1434213 ID=MsG0480018192.01.T01:exon:528;Parent=MsG0480018192.01.T01
Chr4 exon 1437285 1437667 1437285 ID=MsG0480018192.01.T01:exon:527;Parent=MsG0480018192.01.T01
Chr4 five_prime_UTR 1437530 1437667 1437530 ID=MsG0480018192.01.T01:five_prime_utr;Parent=MsG0480018192.01.T01
Chr4 CDS 1437285 1437529 1437285 ID=MsG0480018192.01.T01:cds;Parent=MsG0480018192.01.T01
Chr4 CDS 1434511 1434760 1434511 ID=MsG0480018192.01.T01:cds;Parent=MsG0480018192.01.T01
Chr4 three_prime_UTR 1434213 1434510 1434213 ID=MsG0480018192.01.T01:three_prime_utr;Parent=MsG0480018192.01.T01
Gene Sequence

>MsG0480018192.01.T01

ATGGGTATTTTTGCTGCTATTGGAGTGTTATCACCATTTCCATTCTACTATTACCTTTGGAATTGGCCACAATCATGGGTTGATTTCTGTGGTAAAGGAAGAGACCCTTCAAAGATTATGGCTTATGTTGCTCATTTCTTGAAGATAATTCAGTTCATTTCACTCTTTTCTGTCTCTTCTTTTCATTGGCCTCCTCCTTTTTACTTTTGGCCCCTTTTTGCATTTGGACAGTTCCTTAACTTCAGGGTTTATCAGCTGCTTGGTGAACCCGGCACGTACTACGGTGTACGCTTTGGAAAAACTCTTCCATGGGTAACCGAATTCCCTTTCGGCGTCATCAGTGATCCTCAGTATGTCGGCAGCATCATGAGTCTTGTTGCATGCATTTCATGGGTTCCTTTTCAGTACATCCTCCTGTGGATTTTAGGATATGTGTTTATGATGCACGTGGAGTCGAAGGAAGATCAATCAACTCGAGCCAAGCCACTCAATTGA
Protein sequence

>MsG0480018192.01.T01

MGIFAAIGVLSPFPFYYYLWNWPQSWVDFCGKGRDPSKIMAYVAHFLKIIQFISLFSVSSFHWPPPFYFWPLFAFGQFLNFRVYQLLGEPGTYYGVRFGKTLPWVTEFPFGVISDPQYVGSIMSLVACISWVPFQYILLWILGYVFMMHVESKEDQSTRAKPLN*