Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014551.01.T01 | XP_027354476.1 | 51.639 | 122 | 36 | 2 | 3 | 101 | 188 | 309 | 2.35E-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014551.01.T01 | Q8H1G0 | 62.791 | 43 | 16 | 0 | 7 | 49 | 223 | 265 | 2.63E-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014551.01.T01 | A0A834WC36 | 49.587 | 121 | 38 | 2 | 5 | 103 | 293 | 412 | 5.58e-24 | 105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048532.01 | MsG0380014551.01 | 0.815673 | 8.193458e-52 | 5.685671e-49 |
| MsG0080048809.01 | MsG0380014551.01 | 0.882790 | 7.751798e-71 | 4.788019e-67 |
| MsG0180000157.01 | MsG0380014551.01 | -0.824348 | 8.476989e-54 | 7.488698e-51 |
| MsG0180000240.01 | MsG0380014551.01 | 0.823905 | 1.076674e-53 | 9.394013e-51 |
| MsG0180000267.01 | MsG0380014551.01 | -0.802198 | 6.285214e-49 | 3.059908e-46 |
| MsG0180000669.01 | MsG0380014551.01 | -0.816292 | 5.962499e-52 | 4.208359e-49 |
| MsG0180000673.01 | MsG0380014551.01 | -0.803118 | 4.061410e-49 | 2.024150e-46 |
| MsG0180001663.01 | MsG0380014551.01 | -0.800732 | 1.255191e-48 | 5.888257e-46 |
| MsG0180001712.01 | MsG0380014551.01 | -0.802135 | 6.477674e-49 | 3.148649e-46 |
| MsG0180002140.01 | MsG0380014551.01 | -0.809037 | 2.305922e-50 | 1.339443e-47 |
| MsG0180002750.01 | MsG0380014551.01 | 0.838180 | 3.351619e-57 | 4.453379e-54 |
| MsG0180003118.01 | MsG0380014551.01 | 0.858471 | 8.053325e-63 | 2.057634e-59 |
| MsG0180003878.01 | MsG0380014551.01 | 0.805721 | 1.164174e-49 | 6.204489e-47 |
| MsG0180004085.01 | MsG0380014551.01 | -0.831968 | 1.235281e-55 | 1.361784e-52 |
| MsG0180004599.01 | MsG0380014551.01 | -0.839539 | 1.491386e-57 | 2.065815e-54 |
| MsG0180004600.01 | MsG0380014551.01 | -0.830182 | 3.391055e-55 | 3.546595e-52 |
| MsG0180004602.01 | MsG0380014551.01 | -0.805784 | 1.129593e-49 | 6.029644e-47 |
| MsG0180004603.01 | MsG0380014551.01 | -0.805381 | 1.371876e-49 | 7.247327e-47 |
| MsG0180004853.01 | MsG0380014551.01 | -0.813882 | 2.043308e-51 | 1.350544e-48 |
| MsG0180005106.01 | MsG0380014551.01 | -0.803797 | 2.936966e-49 | 1.489569e-46 |
| MsG0180005160.01 | MsG0380014551.01 | -0.833709 | 4.564060e-56 | 5.298425e-53 |
| MsG0180005354.01 | MsG0380014551.01 | -0.855715 | 5.236534e-62 | 1.220210e-58 |
| MsG0180005515.01 | MsG0380014551.01 | 0.826344 | 2.857005e-54 | 2.672190e-51 |
| MsG0180005676.01 | MsG0380014551.01 | 0.855725 | 5.201181e-62 | 1.212384e-58 |
| MsG0180005881.01 | MsG0380014551.01 | 0.824254 | 8.916462e-54 | 7.855926e-51 |
| MsG0180005999.01 | MsG0380014551.01 | -0.809294 | 2.031287e-50 | 1.188097e-47 |
| MsG0280010784.01 | MsG0380014551.01 | -0.823861 | 1.102601e-53 | 9.608518e-51 |
| MsG0280011235.01 | MsG0380014551.01 | -0.846752 | 1.783052e-59 | 3.100450e-56 |
| MsG0280011287.01 | MsG0380014551.01 | -0.820272 | 7.486181e-53 | 5.896269e-50 |
| MsG0280011376.01 | MsG0380014551.01 | -0.806854 | 6.721308e-50 | 3.687355e-47 |
| MsG0280011419.01 | MsG0380014551.01 | 0.806084 | 9.767127e-50 | 5.253680e-47 |
| MsG0380011729.01 | MsG0380014551.01 | -0.810108 | 1.357993e-50 | 8.115460e-48 |
| MsG0380011754.01 | MsG0380014551.01 | -0.817695 | 2.886024e-52 | 2.116606e-49 |
| MsG0380011895.01 | MsG0380014551.01 | -0.834145 | 3.550645e-56 | 4.176083e-53 |
| MsG0380012184.01 | MsG0380014551.01 | -0.811971 | 5.359658e-51 | 3.364964e-48 |
| MsG0380012279.01 | MsG0380014551.01 | 0.833904 | 4.078883e-56 | 4.764005e-53 |
| MsG0380014145.01 | MsG0380014551.01 | 0.823184 | 1.587466e-53 | 1.357102e-50 |
| MsG0380014551.01 | MsG0380014770.01 | -0.843957 | 1.017738e-58 | 1.618508e-55 |
| MsG0380014551.01 | MsG0380014866.01 | -0.800198 | 1.612442e-48 | 7.462200e-46 |
| MsG0380014551.01 | MsG0380016118.01 | 0.808409 | 3.141676e-50 | 1.794977e-47 |
| MsG0380014551.01 | MsG0380016182.01 | -0.847365 | 1.210863e-59 | 2.147193e-56 |
| MsG0380014551.01 | MsG0380016828.01 | 0.834509 | 2.877292e-56 | 3.422058e-53 |
| MsG0380014551.01 | MsG0380017226.01 | -0.832142 | 1.119246e-55 | 1.239995e-52 |
| MsG0380014551.01 | MsG0380017263.01 | 0.809542 | 1.796988e-50 | 1.058006e-47 |
| MsG0380014551.01 | MsG0380017265.01 | 0.857812 | 1.264387e-62 | 3.159713e-59 |
| MsG0380014551.01 | MsG0380017286.01 | -0.805541 | 1.270195e-49 | 6.737542e-47 |
| MsG0380014551.01 | MsG0380017356.01 | 0.801016 | 1.098530e-48 | 5.190947e-46 |
| MsG0380014551.01 | MsG0380017551.01 | 0.839111 | 1.926740e-57 | 2.634041e-54 |
| MsG0380014551.01 | MsG0380017598.01 | -0.804240 | 2.375284e-49 | 1.218421e-46 |
| MsG0380014551.01 | MsG0380017625.01 | -0.836585 | 8.582654e-57 | 1.086314e-53 |
| MsG0380014551.01 | MsG0380017914.01 | 0.822783 | 1.969137e-53 | 1.664457e-50 |
| MsG0380014551.01 | MsG0380017941.01 | -0.822871 | 1.878210e-53 | 1.591560e-50 |
| MsG0380014551.01 | MsG0380018077.01 | 0.803424 | 3.509413e-49 | 1.762931e-46 |
| MsG0380014551.01 | MsG0480018192.01 | 0.827699 | 1.354497e-54 | 1.317522e-51 |
| MsG0380014551.01 | MsG0480018995.01 | -0.810382 | 1.185136e-50 | 7.132939e-48 |
| MsG0380014551.01 | MsG0480020327.01 | 0.836228 | 1.058343e-56 | 1.325558e-53 |
| MsG0380014551.01 | MsG0480020843.01 | -0.829223 | 5.806019e-55 | 5.905398e-52 |
| MsG0380014551.01 | MsG0480021490.01 | 0.826621 | 2.453961e-54 | 2.313331e-51 |
| MsG0380014551.01 | MsG0480021695.01 | -0.817808 | 2.721772e-52 | 2.002391e-49 |
| MsG0380014551.01 | MsG0480021896.01 | 0.809930 | 1.483005e-50 | 8.821286e-48 |
| MsG0380014551.01 | MsG0480022198.01 | -0.823114 | 1.648549e-53 | 1.406616e-50 |
| MsG0380014551.01 | MsG0480022392.01 | 0.849225 | 3.705986e-60 | 6.978646e-57 |
| MsG0380014551.01 | MsG0480022393.01 | 0.808758 | 2.646441e-50 | 1.525819e-47 |
| MsG0380014551.01 | MsG0480022933.01 | -0.821321 | 4.296896e-53 | 3.484335e-50 |
| MsG0380014551.01 | MsG0480023099.01 | -0.816534 | 5.263491e-52 | 3.739318e-49 |
| MsG0380014551.01 | MsG0480023859.01 | 0.848913 | 4.526138e-60 | 8.435758e-57 |
| MsG0380014551.01 | MsG0480023937.01 | -0.816813 | 4.556504e-52 | 3.261934e-49 |
| MsG0380014551.01 | MsG0580024114.01 | -0.803569 | 3.274978e-49 | 1.651393e-46 |
| MsG0380014551.01 | MsG0580024581.01 | -0.817945 | 2.533802e-52 | 1.871028e-49 |
| MsG0380014551.01 | MsG0580025278.01 | -0.833492 | 5.169971e-56 | 5.963487e-53 |
| MsG0380014551.01 | MsG0580025328.01 | -0.831202 | 1.907541e-55 | 2.055490e-52 |
| MsG0380014551.01 | MsG0580025453.01 | -0.833206 | 6.090740e-56 | 6.965999e-53 |
| MsG0380014551.01 | MsG0580026011.01 | -0.856418 | 3.260648e-62 | 7.777956e-59 |
| MsG0380014551.01 | MsG0580026067.01 | -0.821276 | 4.401626e-53 | 3.564617e-50 |
| MsG0380014551.01 | MsG0580026810.01 | 0.812922 | 3.322894e-51 | 2.139743e-48 |
| MsG0380014551.01 | MsG0580028291.01 | -0.804895 | 1.734213e-49 | 9.048696e-47 |
| MsG0380014551.01 | MsG0580029999.01 | 0.835913 | 1.272198e-56 | 1.577989e-53 |
| MsG0380014551.01 | MsG0680030843.01 | 0.807269 | 5.489072e-50 | 3.043990e-47 |
| MsG0380014551.01 | MsG0680031334.01 | -0.801887 | 7.283349e-49 | 3.518163e-46 |
| MsG0380014551.01 | MsG0680031377.01 | 0.831376 | 1.728602e-55 | 1.872441e-52 |
| MsG0380014551.01 | MsG0680031446.01 | 0.825985 | 3.477708e-54 | 3.219726e-51 |
| MsG0380014551.01 | MsG0680031538.01 | -0.828988 | 6.617107e-55 | 6.682777e-52 |
| MsG0380014551.01 | MsG0680032058.01 | -0.803075 | 4.144344e-49 | 2.063166e-46 |
| MsG0380014551.01 | MsG0680032419.01 | -0.810649 | 1.037563e-50 | 6.289726e-48 |
| MsG0380014551.01 | MsG0680034219.01 | -0.804338 | 2.265982e-49 | 1.165344e-46 |
| MsG0380014551.01 | MsG0680034914.01 | -0.829743 | 4.339815e-55 | 4.481999e-52 |
| MsG0380014551.01 | MsG0680035844.01 | -0.801146 | 1.033448e-48 | 4.899222e-46 |
| MsG0380014551.01 | MsG0780036289.01 | -0.817503 | 3.187553e-52 | 2.325569e-49 |
| MsG0380014551.01 | MsG0780036548.01 | -0.805270 | 1.447367e-49 | 7.624213e-47 |
| MsG0380014551.01 | MsG0780036630.01 | -0.802492 | 5.469240e-49 | 2.682679e-46 |
| MsG0380014551.01 | MsG0780038092.01 | -0.815294 | 9.950235e-52 | 6.833096e-49 |
| MsG0380014551.01 | MsG0780038231.01 | -0.801404 | 9.150420e-49 | 4.366058e-46 |
| MsG0380014551.01 | MsG0780038833.01 | -0.803437 | 3.488350e-49 | 1.752912e-46 |
| MsG0380014551.01 | MsG0780039405.01 | -0.805009 | 1.641280e-49 | 8.588046e-47 |
| MsG0380014551.01 | MsG0780039842.01 | 0.823992 | 1.027311e-53 | 8.984529e-51 |
| MsG0380014551.01 | MsG0780039846.01 | 0.808846 | 2.534029e-50 | 1.464406e-47 |
| MsG0380014551.01 | MsG0780040176.01 | -0.811288 | 7.546000e-51 | 4.652371e-48 |
| MsG0380014551.01 | MsG0780040375.01 | 0.823914 | 1.071411e-53 | 9.350554e-51 |
| MsG0380014551.01 | MsG0780040705.01 | 0.814259 | 1.687496e-51 | 1.126817e-48 |
| MsG0380014551.01 | MsG0780040726.01 | -0.806401 | 8.375782e-50 | 4.541733e-47 |
| MsG0380014551.01 | MsG0780040758.01 | -0.805959 | 1.037520e-49 | 5.563127e-47 |
| MsG0380014551.01 | MsG0780040947.01 | -0.805632 | 1.215493e-49 | 6.462838e-47 |
| MsG0380014551.01 | MsG0780041015.01 | 0.803915 | 2.775267e-49 | 1.411937e-46 |
| MsG0380014551.01 | MsG0880042219.01 | 0.827827 | 1.261551e-54 | 1.231717e-51 |
| MsG0380014551.01 | MsG0880042223.01 | -0.805466 | 1.316843e-49 | 6.971934e-47 |
| MsG0380014551.01 | MsG0880042553.01 | 0.842864 | 1.992996e-58 | 3.062101e-55 |
| MsG0380014551.01 | MsG0880042611.01 | -0.808202 | 3.477092e-50 | 1.975920e-47 |
| MsG0380014551.01 | MsG0880042743.01 | -0.854591 | 1.111839e-61 | 2.495801e-58 |
| MsG0380014551.01 | MsG0880043172.01 | -0.800124 | 1.669543e-48 | 7.712142e-46 |
| MsG0380014551.01 | MsG0880043804.01 | -0.812443 | 4.229008e-51 | 2.689426e-48 |
| MsG0380014551.01 | MsG0880044062.01 | 0.879222 | 1.486236e-69 | 7.993292e-66 |
| MsG0380014551.01 | MsG0880044346.01 | -0.835742 | 1.405933e-56 | 1.735015e-53 |
| MsG0380014551.01 | MsG0880044389.01 | 0.810058 | 1.392359e-50 | 8.309782e-48 |
| MsG0380014551.01 | MsG0880044455.01 | 0.829633 | 4.614609e-55 | 4.749922e-52 |
| MsG0380014551.01 | MsG0880045540.01 | -0.802463 | 5.544442e-49 | 2.717664e-46 |
| MsG0380014551.01 | MsG0880045926.01 | -0.806441 | 8.215401e-50 | 4.459446e-47 |
| MsG0380014551.01 | MsG0880046244.01 | -0.820595 | 6.311518e-53 | 5.015334e-50 |
| MsG0380014551.01 | MsG0880046384.01 | 0.802405 | 5.698451e-49 | 2.789151e-46 |
| MsG0380014551.01 | MsG0880046561.01 | -0.825297 | 5.061989e-54 | 4.595474e-51 |
| MsG0380014551.01 | MsG0880047425.01 | -0.804591 | 2.007140e-49 | 1.038969e-46 |
| MsG0380014551.01 | MsG0880047689.01 | 0.871797 | 5.195326e-67 | 2.122985e-63 |
| MsG0280006462.01 | MsG0380014551.01 | -0.800001 | 1.768836e-48 | 8.145133e-46 |
| MsG0280006753.01 | MsG0380014551.01 | 0.807498 | 4.907878e-50 | 2.737977e-47 |
| MsG0280006906.01 | MsG0380014551.01 | -0.816632 | 5.003787e-52 | 3.564395e-49 |
| MsG0280006935.01 | MsG0380014551.01 | -0.817603 | 3.027219e-52 | 2.214492e-49 |
| MsG0280007390.01 | MsG0380014551.01 | 0.843224 | 1.598027e-58 | 2.483235e-55 |
| MsG0280007743.01 | MsG0380014551.01 | 0.801695 | 7.976228e-49 | 3.833750e-46 |
| MsG0280007864.01 | MsG0380014551.01 | 0.862305 | 5.568568e-64 | 1.623105e-60 |
| MsG0280008295.01 | MsG0380014551.01 | -0.818763 | 1.653769e-52 | 1.249120e-49 |
| MsG0280008907.01 | MsG0380014551.01 | -0.800958 | 1.128888e-48 | 5.326444e-46 |
| MsG0280010204.01 | MsG0380014551.01 | -0.825728 | 4.001003e-54 | 3.677141e-51 |
| MsG0280010423.01 | MsG0380014551.01 | 0.826443 | 2.705260e-54 | 2.537456e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014551.01.T01 | MTR_3g060200 | 44.275 | 131 | 51 | 2 | 2 | 110 | 45 | 175 | 1.04e-25 | 98.6 |
| MsG0380014551.01.T01 | MTR_3g100040 | 50.000 | 106 | 31 | 1 | 3 | 86 | 94 | 199 | 6.76e-25 | 95.1 |
| MsG0380014551.01.T01 | MTR_3g100040 | 50.000 | 106 | 31 | 1 | 3 | 86 | 198 | 303 | 1.59e-24 | 95.9 |
| MsG0380014551.01.T01 | MTR_3g060200 | 65.000 | 60 | 21 | 0 | 2 | 61 | 45 | 104 | 1.64e-18 | 79.7 |
| MsG0380014551.01.T01 | MTR_3g060200 | 65.000 | 60 | 21 | 0 | 2 | 61 | 45 | 104 | 1.74e-18 | 80.1 |
| MsG0380014551.01.T01 | MTR_3g060200 | 65.000 | 60 | 21 | 0 | 2 | 61 | 45 | 104 | 1.76e-18 | 79.7 |
| MsG0380014551.01.T01 | MTR_4g093730 | 46.512 | 86 | 42 | 3 | 2 | 84 | 172 | 256 | 2.10e-15 | 70.9 |
| MsG0380014551.01.T01 | MTR_3g100050 | 40.698 | 86 | 48 | 2 | 1 | 86 | 194 | 276 | 1.15e-13 | 65.9 |
| MsG0380014551.01.T01 | MTR_5g066510 | 40.964 | 83 | 42 | 2 | 7 | 86 | 203 | 281 | 2.03e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014551.01.T01 | AT1G51600 | 62.791 | 43 | 16 | 0 | 7 | 49 | 223 | 265 | 2.68e-13 | 64.7 |
| MsG0380014551.01.T01 | AT1G51600 | 62.791 | 43 | 16 | 0 | 7 | 49 | 223 | 265 | 2.68e-13 | 64.7 |
| MsG0380014551.01.T01 | AT3G21175 | 62.791 | 43 | 16 | 0 | 7 | 49 | 219 | 261 | 1.61e-12 | 62.8 |
| MsG0380014551.01.T01 | AT3G21175 | 62.791 | 43 | 16 | 0 | 7 | 49 | 217 | 259 | 1.63e-12 | 62.8 |
| MsG0380014551.01.T01 | AT4G24470 | 43.056 | 72 | 36 | 1 | 7 | 78 | 214 | 280 | 1.95e-12 | 62.4 |
| MsG0380014551.01.T01 | AT4G24470 | 43.056 | 72 | 36 | 1 | 7 | 78 | 214 | 280 | 1.95e-12 | 62.4 |
| MsG0380014551.01.T01 | AT4G24470 | 56.818 | 44 | 19 | 0 | 7 | 50 | 214 | 257 | 1.35e-11 | 60.1 |
Find 24 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCGTCACGTGGGCCAAAA+AGG | 0.305959 | 3:+56419773 | MsG0380014551.01.T01:CDS |
| TTTAAAACTACCTCTTCAAC+GGG | 0.359063 | 3:-56421515 | None:intergenic |
| CAAATGCGTCCCGGGCCAGC+TGG | 0.413545 | 3:+56419726 | MsG0380014551.01.T01:CDS |
| AGTAAATCTTCCAGCTGGCC+CGG | 0.440593 | 3:-56419736 | None:intergenic |
| TTCTGTTGATCAAAGTGGTC+TGG | 0.446513 | 3:+56420294 | MsG0380014551.01.T01:CDS |
| AGTGGCAGAACACGGCCAAT+TGG | 0.462481 | 3:-56421563 | None:intergenic |
| TCCAAGCTCATTGTTGCCGA+TGG | 0.464599 | 3:+56421470 | MsG0380014551.01.T01:CDS |
| ATTTAAAACTACCTCTTCAA+CGG | 0.506639 | 3:-56421516 | None:intergenic |
| ACCATCGGCAACAATGAGCT+TGG | 0.511631 | 3:-56421471 | None:intergenic |
| AACACTTCTCAAATGCGTCC+CGG | 0.512353 | 3:+56419717 | MsG0380014551.01.T01:CDS |
| TGCATGATTGTTCGAACCAT+CGG | 0.515819 | 3:-56421486 | None:intergenic |
| TCGGCAACAATGAGCTTGGA+AGG | 0.523449 | 3:-56421467 | None:intergenic |
| ACACTTCTCAAATGCGTCCC+GGG | 0.528359 | 3:+56419718 | MsG0380014551.01.T01:CDS |
| TGCATTGAACCCCGTTGAAG+AGG | 0.538463 | 3:+56421505 | MsG0380014551.01.T01:CDS |
| GTAAATCTTCCAGCTGGCCC+GGG | 0.542997 | 3:-56419735 | None:intergenic |
| ACTCATTCTGTTGATCAAAG+TGG | 0.569763 | 3:+56420289 | MsG0380014551.01.T01:CDS |
| CATAGAGTAAATCTTCCAGC+TGG | 0.585448 | 3:-56419741 | None:intergenic |
| TACTTAAAAGTGGCAGAACA+CGG | 0.589574 | 3:-56421571 | None:intergenic |
| GTAATACATGCGGCGTCACG+TGG | 0.612083 | 3:+56419763 | MsG0380014551.01.T01:CDS |
| AGACGTAGATGTCAACATTG+TGG | 0.642693 | 3:+56419681 | MsG0380014551.01.T01:CDS |
| CGGCAACAATGAGCTTGGAA+GGG | 0.643164 | 3:-56421466 | None:intergenic |
| TTTACTCTATGTAATACATG+CGG | 0.695440 | 3:+56419753 | MsG0380014551.01.T01:CDS |
| TAATACATGCGGCGTCACGT+GGG | 0.699536 | 3:+56419764 | MsG0380014551.01.T01:CDS |
| TTAAAACTACCTCTTCAACG+GGG | 0.758088 | 3:-56421514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTGTTAATAAATAAAA+GGG | - | Chr3:56420663-56420682 | None:intergenic | 10.0% |
| !! | TTACTTTGTTAATAAATAAA+AGG | - | Chr3:56420664-56420683 | None:intergenic | 10.0% |
| !!! | TTTTTGTCTTTATTTTATAT+TGG | + | Chr3:56421397-56421416 | MsG0380014551.01.T01:intron | 10.0% |
| !! | AAAAAAATTATGCTATGTTC+AGG | + | Chr3:56421430-56421449 | MsG0380014551.01.T01:intron | 20.0% |
| !! | AAAAAATTATGCTATGTTCA+GGG | + | Chr3:56421431-56421450 | MsG0380014551.01.T01:intron | 20.0% |
| !! | AAAATAATGTTGAATGCAAA+TGG | - | Chr3:56421252-56421271 | None:intergenic | 20.0% |
| !! | AACTCTACAAGTAATTAAAA+TGG | - | Chr3:56421337-56421356 | None:intergenic | 20.0% |
| !! | TACAAGTAATTAAAATGGAA+AGG | - | Chr3:56421332-56421351 | None:intergenic | 20.0% |
| !!! | AAAGTTTTACTTGTTCATTT+TGG | - | Chr3:56421189-56421208 | None:intergenic | 20.0% |
| !!! | ACCAATTCATAAATTTTGAA+AGG | + | Chr3:56421058-56421077 | MsG0380014551.01.T01:intron | 20.0% |
| !!! | CTCATGATTTATTTTATAGT+TGG | + | Chr3:56420344-56420363 | MsG0380014551.01.T01:intron | 20.0% |
| !!! | GCATAATTTTTTTTTGCAAA+TGG | - | Chr3:56421423-56421442 | None:intergenic | 20.0% |
| !!! | TCACAAAATACTTTATTTCA+TGG | - | Chr3:56420706-56420725 | None:intergenic | 20.0% |
| ! | AATAGTTATATTTGCAAACG+CGG | - | Chr3:56420209-56420228 | None:intergenic | 25.0% |
| ! | ACACAATAACATCATTTATG+TGG | - | Chr3:56419889-56419908 | None:intergenic | 25.0% |
| ! | ACACGTCATAATTCTTTAAT+TGG | - | Chr3:56420735-56420754 | None:intergenic | 25.0% |
| ! | ACATAATCTGTTCAATCATT+TGG | + | Chr3:56421303-56421322 | MsG0380014551.01.T01:intron | 25.0% |
| ! | CATTATAATGCTTATGAACT+TGG | - | Chr3:56421368-56421387 | None:intergenic | 25.0% |
| ! | GCCTTTCAAAATTTATGAAT+TGG | - | Chr3:56421062-56421081 | None:intergenic | 25.0% |
| ! | GCTAGAATAAAAAAGAAGTT+TGG | + | Chr3:56419912-56419931 | MsG0380014551.01.T01:intron | 25.0% |
| ! | TGAAATATAATGAAGGACAA+TGG | - | Chr3:56420073-56420092 | None:intergenic | 25.0% |
| ! | TGCATCATGAAATATAATGA+AGG | - | Chr3:56420080-56420099 | None:intergenic | 25.0% |
| ! | TTTACTCTATGTAATACATG+CGG | + | Chr3:56419753-56419772 | MsG0380014551.01.T01:CDS | 25.0% |
| !! | AACAAAATGACTAACCTTTT+TGG | - | Chr3:56419790-56419809 | None:intergenic | 25.0% |
| !! | ATTTAAAACTACCTCTTCAA+CGG | - | Chr3:56421519-56421538 | None:intergenic | 25.0% |
| !! | GTTTTGTCAATACTTAAAAG+TGG | - | Chr3:56421584-56421603 | None:intergenic | 25.0% |
| !!! | AAATGCTTTTGAAAGGATTA+AGG | - | Chr3:56421004-56421023 | None:intergenic | 25.0% |
| !!! | AACGGATTGTTAAAATTGTT+TGG | - | Chr3:56420405-56420424 | None:intergenic | 25.0% |
| !!! | AGTCATTTTGTTAACAAGTA+TGG | + | Chr3:56419798-56419817 | MsG0380014551.01.T01:intron | 25.0% |
| !!! | GTTTTTTTTTAAACTCTGCA+GGG | + | Chr3:56420235-56420254 | MsG0380014551.01.T01:intron | 25.0% |
| !!! | TGCATTTTGATATAATATGC+TGG | + | Chr3:56420096-56420115 | MsG0380014551.01.T01:intron | 25.0% |
| !!! | TGTTTTGAAATGCTTTTGAA+AGG | - | Chr3:56421011-56421030 | None:intergenic | 25.0% |
| !!! | TTATCTGCTTGTACTTTTTT+TGG | + | Chr3:56420853-56420872 | MsG0380014551.01.T01:intron | 25.0% |
| !!! | TTTTTTTTTAAACTCTGCAG+GGG | + | Chr3:56420236-56420255 | MsG0380014551.01.T01:intron | 25.0% |
| ATCCTGCAAATTATATTCAG+TGG | - | Chr3:56421156-56421175 | None:intergenic | 30.0% | |
| ATTTCATATCCAGTTCTTTG+TGG | + | Chr3:56420920-56420939 | MsG0380014551.01.T01:intron | 30.0% | |
| GCAAATTATATTCAGTGGAT+AGG | - | Chr3:56421151-56421170 | None:intergenic | 30.0% | |
| TATGGTTTCAATGAAATGCT+TGG | + | Chr3:56419816-56419835 | MsG0380014551.01.T01:intron | 30.0% | |
| TTAAATCTTCCACAAAGAAC+TGG | - | Chr3:56420932-56420951 | None:intergenic | 30.0% | |
| TTTATGTGGTTAGTACTTAG+TGG | - | Chr3:56419875-56419894 | None:intergenic | 30.0% | |
| ! | ACAATCCGTTTGAAATCAAA+TGG | + | Chr3:56420415-56420434 | MsG0380014551.01.T01:intron | 30.0% |
| ! | ATCCACTGAATATAATTTGC+AGG | + | Chr3:56421151-56421170 | MsG0380014551.01.T01:intron | 30.0% |
| ! | CAACACCATTTGATTTCAAA+CGG | - | Chr3:56420423-56420442 | None:intergenic | 30.0% |
| ! | TTCATTCTTTTACAGCCAAT+TGG | + | Chr3:56421548-56421567 | MsG0380014551.01.T01:CDS | 30.0% |
| ! | TTTAAAACTACCTCTTCAAC+GGG | - | Chr3:56421518-56421537 | None:intergenic | 30.0% |
| !! | TGGTTTATTTTCCCCTTATT+GGG | - | Chr3:56421042-56421061 | None:intergenic | 30.0% |
| !! | TTGGTTTATTTTCCCCTTAT+TGG | - | Chr3:56421043-56421062 | None:intergenic | 30.0% |
| !!! | CGTTTTTTTTTAAACTCTGC+AGG | + | Chr3:56420234-56420253 | MsG0380014551.01.T01:intron | 30.0% |
| AAAATAATACCAGTTGGAGG+AGG | + | Chr3:56420568-56420587 | MsG0380014551.01.T01:intron | 35.0% | |
| AAACAATCTAACCCCCAATA+AGG | + | Chr3:56421026-56421045 | MsG0380014551.01.T01:intron | 35.0% | |
| AACAATCTAACCCCCAATAA+GGG | + | Chr3:56421027-56421046 | MsG0380014551.01.T01:intron | 35.0% | |
| ACTCATTCTGTTGATCAAAG+TGG | + | Chr3:56420289-56420308 | MsG0380014551.01.T01:CDS | 35.0% | |
| ATCACGAATGCGAAGTAAAA+AGG | - | Chr3:56420139-56420158 | None:intergenic | 35.0% | |
| GAAGGGAAAATAATACCAGT+TGG | + | Chr3:56420562-56420581 | MsG0380014551.01.T01:intron | 35.0% | |
| TACTTAAAAGTGGCAGAACA+CGG | - | Chr3:56421574-56421593 | None:intergenic | 35.0% | |
| TTAAAACTACCTCTTCAACG+GGG | - | Chr3:56421517-56421536 | None:intergenic | 35.0% | |
| TTAGTAGAGAATGCAGAGAA+GGG | + | Chr3:56420545-56420564 | MsG0380014551.01.T01:intron | 35.0% | |
| TTATATTATCCTCCTCCAAC+TGG | - | Chr3:56420580-56420599 | None:intergenic | 35.0% | |
| TTTAGTAGAGAATGCAGAGA+AGG | + | Chr3:56420544-56420563 | MsG0380014551.01.T01:intron | 35.0% | |
| ! | ACTTGTTCATTTTGGATGAC+AGG | - | Chr3:56421181-56421200 | None:intergenic | 35.0% |
| ! | AGGAAGCATAATCTCTTATC+AGG | + | Chr3:56420506-56420525 | MsG0380014551.01.T01:intron | 35.0% |
| ! | CGTTTGAAATCAAATGGTGT+TGG | + | Chr3:56420421-56420440 | MsG0380014551.01.T01:intron | 35.0% |
| ! | GGAAGCATAATCTCTTATCA+GGG | + | Chr3:56420507-56420526 | MsG0380014551.01.T01:intron | 35.0% |
| ! | TTACTCAAGTGCTTTTGGAT+AGG | + | Chr3:56420481-56420500 | MsG0380014551.01.T01:intron | 35.0% |
| ! | TTCAGTGGATAGGATGTTTT+AGG | - | Chr3:56421141-56421160 | None:intergenic | 35.0% |
| !! | AAATCAAATGGTGTTGGTGA+TGG | + | Chr3:56420427-56420446 | MsG0380014551.01.T01:intron | 35.0% |
| !! | GGTTTATTTTCCCCTTATTG+GGG | - | Chr3:56421041-56421060 | None:intergenic | 35.0% |
| !! | GTTTATTTTCCCCTTATTGG+GGG | - | Chr3:56421040-56421059 | None:intergenic | 35.0% |
| !!! | CTGCTTGTACTTTTTTTGGA+TGG | + | Chr3:56420857-56420876 | MsG0380014551.01.T01:intron | 35.0% |
| ACAATCTAACCCCCAATAAG+GGG | + | Chr3:56421028-56421047 | MsG0380014551.01.T01:intron | 40.0% | |
| AGACGTAGATGTCAACATTG+TGG | + | Chr3:56419681-56419700 | MsG0380014551.01.T01:CDS | 40.0% | |
| AGCAAACAAGTATGGTCAAC+AGG | - | Chr3:56420163-56420182 | None:intergenic | 40.0% | |
| CACGTCAATAACTTGACGTA+TGG | - | Chr3:56420612-56420631 | None:intergenic | 40.0% | |
| CATAGAGTAAATCTTCCAGC+TGG | - | Chr3:56419744-56419763 | None:intergenic | 40.0% | |
| CCAGTTGCAAAAAGCTTAGT+GGG | + | Chr3:56420370-56420389 | MsG0380014551.01.T01:intron | 40.0% | |
| GAGAATGCAGCAAACAAGTA+TGG | - | Chr3:56420171-56420190 | None:intergenic | 40.0% | |
| GGGAAAATAATACCAGTTGG+AGG | + | Chr3:56420565-56420584 | MsG0380014551.01.T01:intron | 40.0% | |
| TGCATGATTGTTCGAACCAT+CGG | - | Chr3:56421489-56421508 | None:intergenic | 40.0% | |
| TTCTGTTGATCAAAGTGGTC+TGG | + | Chr3:56420294-56420313 | MsG0380014551.01.T01:CDS | 40.0% | |
| ! | CAAGTGCTTTTGGATAGGAA+AGG | + | Chr3:56420486-56420505 | MsG0380014551.01.T01:intron | 40.0% |
| ! | GTGTCTTACTCAAGTGCTTT+TGG | + | Chr3:56420476-56420495 | MsG0380014551.01.T01:intron | 40.0% |
| ! | TTTTGGATGGCACAATGAGA+TGG | + | Chr3:56420870-56420889 | MsG0380014551.01.T01:intron | 40.0% |
| AACACTTCTCAAATGCGTCC+CGG | + | Chr3:56419717-56419736 | MsG0380014551.01.T01:CDS | 45.0% | |
| GCCAGTTGCAAAAAGCTTAG+TGG | + | Chr3:56420369-56420388 | MsG0380014551.01.T01:intron | 45.0% | |
| GCCTTACTTGAAAGTCATCG+TGG | + | Chr3:56421080-56421099 | MsG0380014551.01.T01:intron | 45.0% | |
| ! | CCCACTAAGCTTTTTGCAAC+TGG | - | Chr3:56420373-56420392 | None:intergenic | 45.0% |
| ! | GCCACGATGACTTTCAAGTA+AGG | - | Chr3:56421084-56421103 | None:intergenic | 45.0% |
| ACACTTCTCAAATGCGTCCC+GGG | + | Chr3:56419718-56419737 | MsG0380014551.01.T01:CDS | 50.0% | |
| ACCATCGGCAACAATGAGCT+TGG | - | Chr3:56421474-56421493 | None:intergenic | 50.0% | |
| AGTAAATCTTCCAGCTGGCC+CGG | - | Chr3:56419739-56419758 | None:intergenic | 50.0% | |
| CGGCAACAATGAGCTTGGAA+GGG | - | Chr3:56421469-56421488 | None:intergenic | 50.0% | |
| TAATACATGCGGCGTCACGT+GGG | + | Chr3:56419764-56419783 | MsG0380014551.01.T01:CDS | 50.0% | |
| TCCAAGCTCATTGTTGCCGA+TGG | + | Chr3:56421470-56421489 | MsG0380014551.01.T01:CDS | 50.0% | |
| TCGGCAACAATGAGCTTGGA+AGG | - | Chr3:56421470-56421489 | None:intergenic | 50.0% | |
| TGCATTGAACCCCGTTGAAG+AGG | + | Chr3:56421505-56421524 | MsG0380014551.01.T01:CDS | 50.0% | |
| AGTGGCAGAACACGGCCAAT+TGG | - | Chr3:56421566-56421585 | None:intergenic | 55.0% | |
| GTAAATCTTCCAGCTGGCCC+GGG | - | Chr3:56419738-56419757 | None:intergenic | 55.0% | |
| GTAATACATGCGGCGTCACG+TGG | + | Chr3:56419763-56419782 | MsG0380014551.01.T01:CDS | 55.0% | |
| CGGCGTCACGTGGGCCAAAA+AGG | + | Chr3:56419773-56419792 | MsG0380014551.01.T01:CDS | 65.0% | |
| CAAATGCGTCCCGGGCCAGC+TGG | + | Chr3:56419726-56419745 | MsG0380014551.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 56419672 | 56421628 | 56419672 | ID=MsG0380014551.01;Name=MsG0380014551.01 |
| Chr3 | mRNA | 56419672 | 56421628 | 56419672 | ID=MsG0380014551.01.T01;Parent=MsG0380014551.01;Name=MsG0380014551.01.T01;_AED=0.49;_eAED=0.62;_QI=0|1|0.33|1|1|1|3|0|119 |
| Chr3 | exon | 56419672 | 56419794 | 56419672 | ID=MsG0380014551.01.T01:exon:23680;Parent=MsG0380014551.01.T01 |
| Chr3 | exon | 56420256 | 56420315 | 56420256 | ID=MsG0380014551.01.T01:exon:23681;Parent=MsG0380014551.01.T01 |
| Chr3 | exon | 56421452 | 56421628 | 56421452 | ID=MsG0380014551.01.T01:exon:23682;Parent=MsG0380014551.01.T01 |
| Chr3 | CDS | 56419672 | 56419794 | 56419672 | ID=MsG0380014551.01.T01:cds;Parent=MsG0380014551.01.T01 |
| Chr3 | CDS | 56420256 | 56420315 | 56420256 | ID=MsG0380014551.01.T01:cds;Parent=MsG0380014551.01.T01 |
| Chr3 | CDS | 56421452 | 56421628 | 56421452 | ID=MsG0380014551.01.T01:cds;Parent=MsG0380014551.01.T01 |
| Gene Sequence |
| Protein sequence |
