AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003118.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003118.01.T01 MTR_1g054315 94.545 165 8 1 1 164 1 165 5.59e-111 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003118.01.T01 AT3G58470 57.558 172 60 3 17 179 23 190 5.93e-62 193

Find 55 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCTCCTAGTCTCGTTTC+AGG 0.182132 1:-56867305 None:intergenic
CTGAGTTCGGTCACCGAGTT+AGG 0.249256 1:-56863626 None:intergenic
ATCTGTAAGAAGTTCAATTT+AGG 0.301564 1:+56867379 MsG0180003118.01.T01:three_prime_UTR
AAATTCATTTCCAAGTTTAC+TGG 0.322537 1:-56867261 None:intergenic
GTAAACTTGGAAATGAATTT+CGG 0.334237 1:+56867264 MsG0180003118.01.T01:CDS
TTTCTCTTGTATCTGAAGAT+TGG 0.354043 1:+56863759 MsG0180003118.01.T01:CDS
GAGATTGAGATAACTCAAAT+TGG 0.381953 1:-56867407 None:intergenic
AGAAAGTGCAGCTGAGATCT+TGG 0.397121 1:+56867205 MsG0180003118.01.T01:CDS
CTCTTGTATCTGAAGATTGG+AGG 0.401072 1:+56863762 MsG0180003118.01.T01:CDS
CCCCATCACTCCAGTAAACT+TGG 0.404382 1:+56867251 MsG0180003118.01.T01:CDS
AATTCTGATGGTAACTCCTC+GGG 0.411885 1:-56865702 None:intergenic
AGTTGCTGATCCTCCTTACT+TGG 0.418036 1:+56865746 MsG0180003118.01.T01:CDS
AGAAGTTGCACAGACACATT+AGG 0.425494 1:-56865618 None:intergenic
ATTGGAGGCTGAGTCAGTTC+TGG 0.433675 1:+56863777 MsG0180003118.01.T01:CDS
GAAAGTGCAGCTGAGATCTT+GGG 0.436708 1:+56867206 MsG0180003118.01.T01:CDS
AAGAGTAGGACAAGCAATAC+AGG 0.446629 1:-56863876 None:intergenic
ATCAGCAACTATAACTTTGT+AGG 0.456992 1:-56865733 None:intergenic
AGAGCATGGGAGCTTAGAAC+TGG 0.467076 1:-56863665 None:intergenic
TCCAAGTTTACTGGAGTGAT+GGG 0.468152 1:-56867252 None:intergenic
CAATTAACTCTCACCAAGTA+AGG 0.472488 1:-56865759 None:intergenic
TTCCAAGTTTACTGGAGTGA+TGG 0.474264 1:-56867253 None:intergenic
ACCCTCCTAGTCTCGTTTCA+GGG 0.482824 1:-56867304 None:intergenic
TAGGAATTCTTCAATTCTGA+TGG 0.493195 1:-56865714 None:intergenic
CAATTCTGATGGTAACTCCT+CGG 0.493389 1:-56865703 None:intergenic
TGCAAAGACAGTTGCTGAAG+AGG 0.497317 1:+56863814 MsG0180003118.01.T01:CDS
CTCGGAGAGAAACTCTTTGA+GGG 0.500838 1:-56863693 None:intergenic
GCTCGGAGAGAAACTCTTTG+AGG 0.503838 1:-56863694 None:intergenic
ATCGGAGTGACTCTGCTGCT+CGG 0.508122 1:-56863711 None:intergenic
CTTTGAGGGCGGAGAGAGCA+TGG 0.509962 1:-56863679 None:intergenic
AGAGTTGTCTCCTGTGGCAT+CGG 0.521374 1:-56863729 None:intergenic
TACTCTTTATGCTTATCTCA+AGG 0.531204 1:+56863892 MsG0180003118.01.T01:CDS
TGAGTTCGGTCACCGAGTTA+GGG 0.532644 1:-56863625 None:intergenic
GTTCTTACTCTTTGCAGCAA+TGG 0.535294 1:+56863836 MsG0180003118.01.T01:CDS
ATCTTGGGCTTGCATCCTTG+TGG 0.539758 1:+56867221 MsG0180003118.01.T01:CDS
CAGAGTCACTCCGATGCCAC+AGG 0.563264 1:+56863719 MsG0180003118.01.T01:CDS
GTCGTCGTCTTCACTGAGTT+CGG 0.564801 1:-56863639 None:intergenic
ATTGAGATAACTCAAATTGG+TGG 0.565088 1:-56867404 None:intergenic
GACCCTGAAACGAGACTAGG+AGG 0.585476 1:+56867302 MsG0180003118.01.T01:exon
TTTGCACATACAAATCATTG+TGG 0.601254 1:-56867476 None:intergenic
TTGAGATAAGCATAAAGAGT+AGG 0.602145 1:-56863890 None:intergenic
TTCATCAGAGTTGTCTCCTG+TGG 0.604124 1:-56863735 None:intergenic
ACTCGAACTGAACCCTAACT+CGG 0.604207 1:+56863613 MsG0180003118.01.T01:CDS
CTGAAACGAGACTAGGAGGG+TGG 0.610153 1:+56867306 MsG0180003118.01.T01:exon
TTTGAGGGCGGAGAGAGCAT+GGG 0.614954 1:-56863678 None:intergenic
CCAAGTTTACTGGAGTGATG+GGG 0.636163 1:-56867251 None:intergenic
TTAACTCTCACCAAGTAAGG+AGG 0.640995 1:-56865756 None:intergenic
TCATCCTACACAAACAAACA+TGG 0.641398 1:+56863583 None:intergenic
TATGACCCTGAAACGAGACT+AGG 0.648626 1:+56867299 MsG0180003118.01.T01:CDS
TGAAACGAGACTAGGAGGGT+GGG 0.648782 1:+56867307 MsG0180003118.01.T01:exon
GGAGAGAAACTCTTTGAGGG+CGG 0.677392 1:-56863690 None:intergenic
ATTCTGATGGTAACTCCTCG+GGG 0.683850 1:-56865701 None:intergenic
ACCCTGAAACGAGACTAGGA+GGG 0.699962 1:+56867303 MsG0180003118.01.T01:exon
TGATGGGGTCTAAAACCACA+AGG 0.707023 1:-56867236 None:intergenic
TCCTACACAAACAAACATGG+CGG 0.735451 1:+56863586 None:intergenic
CTATGACTACAATCACCCCG+AGG 0.797637 1:+56865686 MsG0180003118.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTTATATTTTTAGTT+TGG + Chr1:56866199-56866218 MsG0180003118.01.T01:intron 10.0%
!! AATATATAAGGAAAAATGTT+TGG + Chr1:56865068-56865087 MsG0180003118.01.T01:intron 15.0%
!! ATATATAAAGGAAAAATGTT+TGG + Chr1:56864457-56864476 MsG0180003118.01.T01:intron 15.0%
!! ATTAACTGAATAAAGATATA+AGG - Chr1:56865917-56865936 None:intergenic 15.0%
!! TTATTGCTAATTATTGTTTA+GGG + Chr1:56864663-56864682 MsG0180003118.01.T01:intron 15.0%
!! TTTATTGCTAATTATTGTTT+AGG + Chr1:56864662-56864681 MsG0180003118.01.T01:intron 15.0%
!!! ATTTTAGCAATTCTTTATAT+TGG - Chr1:56867135-56867154 None:intergenic 15.0%
!!! TAATTTTACCTACTTTAATT+TGG + Chr1:56865785-56865804 MsG0180003118.01.T01:intron 15.0%
!!! TATTTTCAATTTTCAGAAAA+TGG + Chr1:56865593-56865612 MsG0180003118.01.T01:intron 15.0%
!!! TCAATAAATTTTGTAAAGAT+GGG - Chr1:56866469-56866488 None:intergenic 15.0%
!!! TTTTGATGTCAAATTTAAAA+GGG + Chr1:56866375-56866394 MsG0180003118.01.T01:intron 15.0%
!!! TTTTTGATGTCAAATTTAAA+AGG + Chr1:56866374-56866393 MsG0180003118.01.T01:intron 15.0%
!! AGCAAAAAGAAATATAAAGA+AGG - Chr1:56866715-56866734 None:intergenic 20.0%
!! GAAAAAAAATACAATAGATG+AGG - Chr1:56866528-56866547 None:intergenic 20.0%
!! TAAATTTGACATCAAAAAAG+AGG - Chr1:56866372-56866391 None:intergenic 20.0%
!! TCAAAATCATTCTTACAATT+TGG - Chr1:56865562-56865581 None:intergenic 20.0%
!! TTCACTAAGGAAATATATAA+AGG + Chr1:56864445-56864464 MsG0180003118.01.T01:intron 20.0%
!!! AAAAGGGCATATATTTATTT+TGG + Chr1:56866391-56866410 MsG0180003118.01.T01:intron 20.0%
!!! GATTTTGCTATTTTGAATAT+TGG + Chr1:56865942-56865961 MsG0180003118.01.T01:intron 20.0%
!!! GTCAATAAATTTTGTAAAGA+TGG - Chr1:56866470-56866489 None:intergenic 20.0%
!!! TCTTTTCTTCTATTTTTGAA+AGG + Chr1:56866240-56866259 MsG0180003118.01.T01:intron 20.0%
!!! TTTTTCCTTATATATTTCCT+TGG - Chr1:56865064-56865083 None:intergenic 20.0%
! AAATTCATTTCCAAGTTTAC+TGG - Chr1:56867264-56867283 None:intergenic 25.0%
! AAGAAAAGTTCCTTCAAAAT+CGG + Chr1:56866845-56866864 MsG0180003118.01.T01:intron 25.0%
! AATTACAAGTAACAGGATTA+TGG + Chr1:56866557-56866576 MsG0180003118.01.T01:intron 25.0%
! ACTAATACCATCTTGAAATT+TGG - Chr1:56864771-56864790 None:intergenic 25.0%
! AGAAGTGGAAGTAAAATAAA+AGG - Chr1:56865833-56865852 None:intergenic 25.0%
! AGTGTATATGTAAGCATATA+AGG - Chr1:56866064-56866083 None:intergenic 25.0%
! ATAGAGATAAGAGAAAATGA+TGG + Chr1:56864515-56864534 MsG0180003118.01.T01:intron 25.0%
! ATCTGTAAGAAGTTCAATTT+AGG + Chr1:56867379-56867398 MsG0180003118.01.T01:three_prime_UTR 25.0%
! ATTACAAGTAACAGGATTAT+GGG + Chr1:56866558-56866577 MsG0180003118.01.T01:intron 25.0%
! CTAATACCATCTTGAAATTT+GGG - Chr1:56864770-56864789 None:intergenic 25.0%
! GAGAGAGATAAAATTAAATG+AGG + Chr1:56865159-56865178 MsG0180003118.01.T01:intron 25.0%
! GATAAAAATAGAGAGAAAGA+GGG + Chr1:56864338-56864357 MsG0180003118.01.T01:intron 25.0%
! GCATTAGTCATGAAAAATTT+AGG - Chr1:56866289-56866308 None:intergenic 25.0%
! GTAAAATTGAATACAACCTT+GGG + Chr1:56867155-56867174 MsG0180003118.01.T01:intron 25.0%
! GTAAACTTGGAAATGAATTT+CGG + Chr1:56867264-56867283 MsG0180003118.01.T01:CDS 25.0%
! TAGAGATAAGAGAAAATGAT+GGG + Chr1:56864516-56864535 MsG0180003118.01.T01:intron 25.0%
! TCTCATTATTCTAATTGCTT+TGG + Chr1:56866960-56866979 MsG0180003118.01.T01:intron 25.0%
! TCTTAAATTATTATCGCTGT+CGG + Chr1:56864082-56864101 MsG0180003118.01.T01:intron 25.0%
! TCTTTAATTGCATGATATAG+TGG + Chr1:56864639-56864658 MsG0180003118.01.T01:intron 25.0%
! TGTAAAATTGAATACAACCT+TGG + Chr1:56867154-56867173 MsG0180003118.01.T01:intron 25.0%
! TTTCTCTCATTCTTACAATT+TGG - Chr1:56864948-56864967 None:intergenic 25.0%
!! AACATAGCATTCTTTTTATC+TGG - Chr1:56866677-56866696 None:intergenic 25.0%
!! CTGTTACTTGTAATTAGAAA+AGG - Chr1:56866552-56866571 None:intergenic 25.0%
!! CTTTTCTAATTACAAGTAAC+AGG + Chr1:56866550-56866569 MsG0180003118.01.T01:intron 25.0%
!!! AGTGCTTTTAAAGATTTGTT+GGG + Chr1:56864788-56864807 MsG0180003118.01.T01:intron 25.0%
!!! CAATCTTATGTTTTTTCTCT+AGG + Chr1:56865873-56865892 MsG0180003118.01.T01:intron 25.0%
!!! GTTATTGCTTTTGTTTCAAT+AGG + Chr1:56863930-56863949 MsG0180003118.01.T01:intron 25.0%
!!! TAGTGCTTTTAAAGATTTGT+TGG + Chr1:56864787-56864806 MsG0180003118.01.T01:intron 25.0%
!!! TTTTTTCTCTAGGTGAAAAA+TGG + Chr1:56865883-56865902 MsG0180003118.01.T01:intron 25.0%
ACCAATACCATCTTGAAATT+TGG - Chr1:56865385-56865404 None:intergenic 30.0%
AGAGAGATAGAGATAAAATG+AGG + Chr1:56864545-56864564 MsG0180003118.01.T01:intron 30.0%
AGAGATTAAGAACACAATGT+GGG + Chr1:56864367-56864386 MsG0180003118.01.T01:intron 30.0%
ATAAACACTCCAATCCAATT+TGG - Chr1:56864691-56864710 None:intergenic 30.0%
ATAAGGAGAAAAGGAAGAAA+AGG - Chr1:56866158-56866177 None:intergenic 30.0%
ATCAGCAACTATAACTTTGT+AGG - Chr1:56865736-56865755 None:intergenic 30.0%
ATTGAGATAACTCAAATTGG+TGG - Chr1:56867407-56867426 None:intergenic 30.0%
ATTGTAAGAATGAGAGAAAG+AGG + Chr1:56864949-56864968 MsG0180003118.01.T01:intron 30.0%
CAAAAGCAATAACAGAAATG+AGG - Chr1:56863923-56863942 None:intergenic 30.0%
CATGAAAAATTTAGGAGACT+GGG - Chr1:56866281-56866300 None:intergenic 30.0%
CCAATACCATCTTGAAATTT+GGG - Chr1:56865384-56865403 None:intergenic 30.0%
CTAACTAAATTCTACGAAAC+CGG - Chr1:56865355-56865374 None:intergenic 30.0%
CTTCTCCAAGGAAATATATA+AGG + Chr1:56865056-56865075 MsG0180003118.01.T01:intron 30.0%
GAGATTGAGATAACTCAAAT+TGG - Chr1:56867410-56867429 None:intergenic 30.0%
GCATATACTATAAGGAGAAA+AGG - Chr1:56866167-56866186 None:intergenic 30.0%
GGATAAAAATAGAGAGAAAG+AGG + Chr1:56864337-56864356 MsG0180003118.01.T01:intron 30.0%
GTACAAATATCACTTCACTA+AGG + Chr1:56864432-56864451 MsG0180003118.01.T01:intron 30.0%
GTATGTCACCAAATTAAAGT+AGG - Chr1:56865796-56865815 None:intergenic 30.0%
GTGATTACAATAAACCTACA+AGG - Chr1:56866605-56866624 None:intergenic 30.0%
TAAACACTCCAATCCAATTT+GGG - Chr1:56864690-56864709 None:intergenic 30.0%
TACTCTTTATGCTTATCTCA+AGG + Chr1:56863892-56863911 MsG0180003118.01.T01:CDS 30.0%
TAGGAATTCTTCAATTCTGA+TGG - Chr1:56865717-56865736 None:intergenic 30.0%
TCATGAAAAATTTAGGAGAC+TGG - Chr1:56866282-56866301 None:intergenic 30.0%
TTCACTTATTTCCATACTCT+CGG - Chr1:56864205-56864224 None:intergenic 30.0%
TTCAGTCTAATCATATGTGA+CGG - Chr1:56864051-56864070 None:intergenic 30.0%
TTGAGATAAGCATAAAGAGT+AGG - Chr1:56863893-56863912 None:intergenic 30.0%
TTGTAAGAATGAGAGAAAGA+GGG + Chr1:56864950-56864969 MsG0180003118.01.T01:intron 30.0%
TTTCTCTTGTATCTGAAGAT+TGG + Chr1:56863759-56863778 MsG0180003118.01.T01:CDS 30.0%
TTTGTTTCAATAGGTCTGTT+TGG + Chr1:56863939-56863958 MsG0180003118.01.T01:intron 30.0%
! AACAAACTCTTGACCATTTT+TGG + Chr1:56864287-56864306 MsG0180003118.01.T01:intron 30.0%
! CATTGACTGCATATACTATA+AGG - Chr1:56866175-56866194 None:intergenic 30.0%
!! ACAAACTCTTGACCATTTTT+GGG + Chr1:56864288-56864307 MsG0180003118.01.T01:intron 30.0%
!! GGTGCTTTTAAAGATTTGTT+GGG + Chr1:56865402-56865421 MsG0180003118.01.T01:intron 30.0%
!! TCAGTGTTGACTATAATACA+AGG + Chr1:56864606-56864625 MsG0180003118.01.T01:intron 30.0%
!! TGGTGCTTTTAAAGATTTGT+TGG + Chr1:56865401-56865420 MsG0180003118.01.T01:intron 30.0%
AAGTAACAGGATTATGGGAT+AGG + Chr1:56866563-56866582 MsG0180003118.01.T01:intron 35.0%
AATGAGTGTTACGAAGTACA+CGG + Chr1:56865187-56865206 MsG0180003118.01.T01:intron 35.0%
AATTTAGGAGACTGGGAAAT+TGG - Chr1:56866274-56866293 None:intergenic 35.0%
ACCTACAATTACAAAACCCA+AGG - Chr1:56867174-56867193 None:intergenic 35.0%
AGAAATGGTTGTCCCAAAAA+TGG - Chr1:56864303-56864322 None:intergenic 35.0%
ATAAACACTCCCATCCAATT+TGG - Chr1:56865305-56865324 None:intergenic 35.0%
ATAAATTATCGCCGAGAGTA+TGG + Chr1:56864191-56864210 MsG0180003118.01.T01:intron 35.0%
ATTGCAAGTGCATAAACAAC+TGG - Chr1:56865857-56865876 None:intergenic 35.0%
CAATTAACTCTCACCAAGTA+AGG - Chr1:56865762-56865781 None:intergenic 35.0%
CACTAATGTCACTACAGAAT+TGG + Chr1:56866003-56866022 MsG0180003118.01.T01:intron 35.0%
CCCAAATTTCAAGATGGTAT+TGG + Chr1:56864767-56864786 MsG0180003118.01.T01:intron 35.0%
CGGTTTCGTAGAATTTAGTT+AGG + Chr1:56865353-56865372 MsG0180003118.01.T01:intron 35.0%
CTAACTCAATTCTACGAAAC+CGG - Chr1:56864741-56864760 None:intergenic 35.0%
CTTACAATTTGGTACAAACC+TGG - Chr1:56864937-56864956 None:intergenic 35.0%
GAGAGATTAAGAACACAATG+TGG + Chr1:56864366-56864385 MsG0180003118.01.T01:intron 35.0%
GCAAAAAGTCATTATGAAGC+AGG - Chr1:56864127-56864146 None:intergenic 35.0%
GCAGTTAATGACTTAAGCTA+GGG + Chr1:56866875-56866894 MsG0180003118.01.T01:intron 35.0%
GCATCTTTCACTTTACAAAC+CGG + Chr1:56864719-56864738 MsG0180003118.01.T01:intron 35.0%
GTACAAATATCACTTCTCCA+AGG + Chr1:56865044-56865063 MsG0180003118.01.T01:intron 35.0%
GTACATCTCAATTCTCATGT+AGG - Chr1:56865970-56865989 None:intergenic 35.0%
TAAACACTCCCATCCAATTT+GGG - Chr1:56865304-56865323 None:intergenic 35.0%
TCATGACTAATGCATTGTGT+TGG + Chr1:56866296-56866315 MsG0180003118.01.T01:intron 35.0%
TGACATTAGTGATGAGTACA+AGG - Chr1:56865994-56866013 None:intergenic 35.0%
TGAGGTGTAAAATGAGTGTT+AGG + Chr1:56864563-56864582 MsG0180003118.01.T01:intron 35.0%
TGCAGTTAATGACTTAAGCT+AGG + Chr1:56866874-56866893 MsG0180003118.01.T01:intron 35.0%
TTCCTTGGATTAAATGCAAC+CGG + Chr1:56863992-56864011 MsG0180003118.01.T01:intron 35.0%
! AACGAACTTGTGACAACTTT+TGG - Chr1:56864412-56864431 None:intergenic 35.0%
! AATGAGTGTTAGGAAGTACA+CGG + Chr1:56864573-56864592 MsG0180003118.01.T01:intron 35.0%
! ACGAACTTGTGACAACTTTT+GGG - Chr1:56864411-56864430 None:intergenic 35.0%
! CATTTCTTCGCTCTTCTTTT+GGG + Chr1:56864316-56864335 MsG0180003118.01.T01:intron 35.0%
! GGATTGGAGTGTTTATTAGT+GGG + Chr1:56864695-56864714 MsG0180003118.01.T01:intron 35.0%
! TATTGTTTAGGGTCCCAAAT+TGG + Chr1:56864674-56864693 MsG0180003118.01.T01:intron 35.0%
! TGGATTGGAGTGTTTATTAG+TGG + Chr1:56864694-56864713 MsG0180003118.01.T01:intron 35.0%
!! ACCTTGGGTTTTGTAATTGT+AGG + Chr1:56867170-56867189 MsG0180003118.01.T01:intron 35.0%
!! GACAAACGTTTTGAGCAATA+TGG + Chr1:56865648-56865667 MsG0180003118.01.T01:CDS 35.0%
!! GTAATAGAGCAAAGAGTGTT+TGG + Chr1:56866982-56867001 MsG0180003118.01.T01:intron 35.0%
!! TCATTTTTGCTTCTACTCAC+AGG + Chr1:56867049-56867068 MsG0180003118.01.T01:intron 35.0%
AAATAGAGAGAAAGAGGGAG+AGG + Chr1:56864343-56864362 MsG0180003118.01.T01:intron 40.0%
AAGAGTAGGACAAGCAATAC+AGG - Chr1:56863879-56863898 None:intergenic 40.0%
AATAGAGAGAAAGAGGGAGA+GGG + Chr1:56864344-56864363 MsG0180003118.01.T01:intron 40.0%
AATTCTGATGGTAACTCCTC+GGG - Chr1:56865705-56865724 None:intergenic 40.0%
AGAAGCAAAAATGACTCTCC+AGG - Chr1:56867043-56867062 None:intergenic 40.0%
AGAAGTTGCACAGACACATT+AGG - Chr1:56865621-56865640 None:intergenic 40.0%
ATGTTTGGCAGACATCTCAT+TGG + Chr1:56864472-56864491 MsG0180003118.01.T01:intron 40.0%
CAATTCTGATGGTAACTCCT+CGG - Chr1:56865706-56865725 None:intergenic 40.0%
CCAAAAGAAGAGCGAAGAAA+TGG - Chr1:56864318-56864337 None:intergenic 40.0%
CGGTTTCGTAGAATTGAGTT+AGG + Chr1:56864739-56864758 MsG0180003118.01.T01:intron 40.0%
CTCTTGTATCTGAAGATTGG+AGG + Chr1:56863762-56863781 MsG0180003118.01.T01:CDS 40.0%
GCTCAACCCAAATTTCAAGA+TGG + Chr1:56864761-56864780 MsG0180003118.01.T01:intron 40.0%
GGAGAAAAGGAAGAAAAGGA+CGG - Chr1:56866154-56866173 None:intergenic 40.0%
GTTCTTACTCTTTGCAGCAA+TGG + Chr1:56863836-56863855 MsG0180003118.01.T01:CDS 40.0%
TATAAGTAACCTTTCGAGCC+AGG + Chr1:56865530-56865549 MsG0180003118.01.T01:intron 40.0%
TATATGTAACCTTTCGAGCC+AGG + Chr1:56864916-56864935 MsG0180003118.01.T01:intron 40.0%
TATCAAGAACATAACCCACG+TGG - Chr1:56864828-56864847 None:intergenic 40.0%
TCCAAGTTTACTGGAGTGAT+GGG - Chr1:56867255-56867274 None:intergenic 40.0%
TGTTTGGCAGACATCTCATT+GGG + Chr1:56864473-56864492 MsG0180003118.01.T01:intron 40.0%
TTAACTCTCACCAAGTAAGG+AGG - Chr1:56865759-56865778 None:intergenic 40.0%
TTCCAAGTTTACTGGAGTGA+TGG - Chr1:56867256-56867275 None:intergenic 40.0%
! ATGTCTTTTCTCAGACAACC+TGG + Chr1:56867022-56867041 MsG0180003118.01.T01:intron 40.0%
! CCATTTCTTCGCTCTTCTTT+TGG + Chr1:56864315-56864334 MsG0180003118.01.T01:intron 40.0%
! TAAGAAGCACGTACATTCCT+TGG + Chr1:56863977-56863996 MsG0180003118.01.T01:intron 40.0%
! TATCTAGAACATAACCCACG+TGG - Chr1:56865442-56865461 None:intergenic 40.0%
! TTTAGGGTCCCAAATTGGAT+GGG + Chr1:56864679-56864698 MsG0180003118.01.T01:intron 40.0%
! TTTAGGGTCCCAAATTGGAT+TGG + Chr1:56864679-56864698 MsG0180003118.01.T01:intron 40.0%
!! GGATGGGAGTGTTTATTAGT+GGG + Chr1:56865309-56865328 MsG0180003118.01.T01:intron 40.0%
!! TGGATGGGAGTGTTTATTAG+TGG + Chr1:56865308-56865327 MsG0180003118.01.T01:intron 40.0%
ACTAGGAGGGTGGGAAAAAT+AGG + Chr1:56867316-56867335 MsG0180003118.01.T01:exon 45.0%
ACTCGAACTGAACCCTAACT+CGG + Chr1:56863613-56863632 MsG0180003118.01.T01:CDS 45.0%
AGAATGAGAGAAAGAGGGAG+AGG + Chr1:56864955-56864974 MsG0180003118.01.T01:intron 45.0%
AGTTGCTGATCCTCCTTACT+TGG + Chr1:56865746-56865765 MsG0180003118.01.T01:CDS 45.0%
ATCCAGTCTTGAACGTGAGA+GGG + Chr1:56864847-56864866 MsG0180003118.01.T01:intron 45.0%
ATTCTGATGGTAACTCCTCG+GGG - Chr1:56865704-56865723 None:intergenic 45.0%
CAGGATTATGGGATAGGAAG+TGG + Chr1:56866569-56866588 MsG0180003118.01.T01:intron 45.0%
CCAAGTTTACTGGAGTGATG+GGG - Chr1:56867254-56867273 None:intergenic 45.0%
CTCGGAGAGAAACTCTTTGA+GGG - Chr1:56863696-56863715 None:intergenic 45.0%
GAATGAGAGAAAGAGGGAGA+GGG + Chr1:56864956-56864975 MsG0180003118.01.T01:intron 45.0%
GCATAAACAACTGGCAGAAG+TGG - Chr1:56865848-56865867 None:intergenic 45.0%
GGATTAAATGCAACCGGTGT+CGG + Chr1:56863998-56864017 MsG0180003118.01.T01:intron 45.0%
GGTGTGTTGAGAGTCTCATT+TGG + Chr1:56864868-56864887 MsG0180003118.01.T01:intron 45.0%
GTCATTATGAAGCAGGCACA+CGG - Chr1:56864120-56864139 None:intergenic 45.0%
TATCCAGTCTTGAACGTGAG+AGG + Chr1:56864846-56864865 MsG0180003118.01.T01:intron 45.0%
TATGACCCTGAAACGAGACT+AGG + Chr1:56867299-56867318 MsG0180003118.01.T01:CDS 45.0%
TGCAAAGACAGTTGCTGAAG+AGG + Chr1:56863814-56863833 MsG0180003118.01.T01:CDS 45.0%
TTCATCAGAGTTGTCTCCTG+TGG - Chr1:56863738-56863757 None:intergenic 45.0%
TTTGTTGGGCCATCTGCTAT+CGG + Chr1:56864802-56864821 MsG0180003118.01.T01:intron 45.0%
! AGAAAGTGCAGCTGAGATCT+TGG + Chr1:56867205-56867224 MsG0180003118.01.T01:CDS 45.0%
! CACCGGTTGCATTTAATCCA+AGG - Chr1:56863997-56864016 None:intergenic 45.0%
! GAAAGTGCAGCTGAGATCTT+GGG + Chr1:56867206-56867225 MsG0180003118.01.T01:CDS 45.0%
! GTGGATATTGTCAGCCTTGT+AGG + Chr1:56866588-56866607 MsG0180003118.01.T01:intron 45.0%
! GTTTAGGGTCCCAAATTGGA+TGG + Chr1:56864678-56864697 MsG0180003118.01.T01:intron 45.0%
! TGATGGGGTCTAAAACCACA+AGG - Chr1:56867239-56867258 None:intergenic 45.0%
! TGCATTCGCTCCGATTTTGA+AGG - Chr1:56866858-56866877 None:intergenic 45.0%
ACCCTCCTAGTCTCGTTTCA+GGG - Chr1:56867307-56867326 None:intergenic 50.0%
ACCCTGAAACGAGACTAGGA+GGG + Chr1:56867303-56867322 MsG0180003118.01.T01:exon 50.0%
AGAGCATGGGAGCTTAGAAC+TGG - Chr1:56863668-56863687 None:intergenic 50.0%
AGAGTTGTCTCCTGTGGCAT+CGG - Chr1:56863732-56863751 None:intergenic 50.0%
ATCTTGGGCTTGCATCCTTG+TGG + Chr1:56867221-56867240 MsG0180003118.01.T01:CDS 50.0%
ATTGGAGGCTGAGTCAGTTC+TGG + Chr1:56863777-56863796 MsG0180003118.01.T01:CDS 50.0%
CCCCATCACTCCAGTAAACT+TGG + Chr1:56867251-56867270 MsG0180003118.01.T01:CDS 50.0%
CTATGACTACAATCACCCCG+AGG + Chr1:56865686-56865705 MsG0180003118.01.T01:CDS 50.0%
GCTCGGAGAGAAACTCTTTG+AGG - Chr1:56863697-56863716 None:intergenic 50.0%
GTCGTCGTCTTCACTGAGTT+CGG - Chr1:56863642-56863661 None:intergenic 50.0%
TGAAACGAGACTAGGAGGGT+GGG + Chr1:56867307-56867326 MsG0180003118.01.T01:exon 50.0%
TGAGTTCGGTCACCGAGTTA+GGG - Chr1:56863628-56863647 None:intergenic 50.0%
! GGAGAGAAACTCTTTGAGGG+CGG - Chr1:56863693-56863712 None:intergenic 50.0%
! TGGTACAAACCTGGCTCGAA+AGG - Chr1:56864928-56864947 None:intergenic 50.0%
!! TGACGGTGTCATTTCGTGTC+AGG - Chr1:56864034-56864053 None:intergenic 50.0%
ATCGGAGTGACTCTGCTGCT+CGG - Chr1:56863714-56863733 None:intergenic 55.0%
ATTATCGCTGTCGGCGTGTC+TGG + Chr1:56864091-56864110 MsG0180003118.01.T01:intron 55.0%
CACCCTCCTAGTCTCGTTTC+AGG - Chr1:56867308-56867327 None:intergenic 55.0%
CACCCTCTCACGTTCAAGAC+TGG - Chr1:56864852-56864871 None:intergenic 55.0%
CTGAAACGAGACTAGGAGGG+TGG + Chr1:56867306-56867325 MsG0180003118.01.T01:exon 55.0%
CTGAGTTCGGTCACCGAGTT+AGG - Chr1:56863629-56863648 None:intergenic 55.0%
GACCCTGAAACGAGACTAGG+AGG + Chr1:56867302-56867321 MsG0180003118.01.T01:exon 55.0%
! TTTGAGGGCGGAGAGAGCAT+GGG - Chr1:56863681-56863700 None:intergenic 55.0%
CAGAGTCACTCCGATGCCAC+AGG + Chr1:56863719-56863738 MsG0180003118.01.T01:CDS 60.0%
CCATCTGCTATCGGCCACGT+GGG + Chr1:56864811-56864830 MsG0180003118.01.T01:intron 60.0%
! CTTTGAGGGCGGAGAGAGCA+TGG - Chr1:56863682-56863701 None:intergenic 60.0%
AGGCGACGTGTGTCCGACAC+CGG - Chr1:56864014-56864033 None:intergenic 65.0%
CCCACGTGGCCGATAGCAGA+TGG - Chr1:56864814-56864833 None:intergenic 65.0%
GCCATCTGCTATCGGCCACG+TGG + Chr1:56864810-56864829 MsG0180003118.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 56863598 56867493 56863598 ID=MsG0180003118.01;Name=MsG0180003118.01
Chr1 mRNA 56863598 56867493 56863598 ID=MsG0180003118.01.T01;Parent=MsG0180003118.01;Name=MsG0180003118.01.T01;_AED=0.45;_eAED=0.45;_QI=4|0.5|1|1|1|1|3|173|199
Chr1 exon 56863598 56863913 56863598 ID=MsG0180003118.01.T01:exon:15636;Parent=MsG0180003118.01.T01
Chr1 exon 56865609 56865767 56865609 ID=MsG0180003118.01.T01:exon:15637;Parent=MsG0180003118.01.T01
Chr1 exon 56867192 56867493 56867192 ID=MsG0180003118.01.T01:exon:15638;Parent=MsG0180003118.01.T01
Chr1 five_prime_UTR 56863598 56863601 56863598 ID=MsG0180003118.01.T01:five_prime_utr;Parent=MsG0180003118.01.T01
Chr1 CDS 56863602 56863913 56863602 ID=MsG0180003118.01.T01:cds;Parent=MsG0180003118.01.T01
Chr1 CDS 56865609 56865767 56865609 ID=MsG0180003118.01.T01:cds;Parent=MsG0180003118.01.T01
Chr1 CDS 56867192 56867320 56867192 ID=MsG0180003118.01.T01:cds;Parent=MsG0180003118.01.T01
Chr1 three_prime_UTR 56867321 56867493 56867321 ID=MsG0180003118.01.T01:three_prime_utr;Parent=MsG0180003118.01.T01
Gene Sequence

>MsG0180003118.01.T01

ATGGCGGAACAACTCGAACTGAACCCTAACTCGGTGACCGAACTCAGTGAAGACGACGACACTCCAGTTCTAAGCTCCCATGCTCTCTCCGCCCTCAAAGAGTTTCTCTCCGAGCAGCAGAGTCACTCCGATGCCACAGGAGACAACTCTGATGAAGTTTCTCTTGTATCTGAAGATTGGAGGCTGAGTCAGTTCTGGTATGATTCAGAAACTGCAAAGACAGTTGCTGAAGAGGTTCTTACTCTTTGCAGCAATGGCGTTGATTCTCGTGTTGCCTGTATTGCTTGTCCTACTCTTTATGCTTATCTCAAGAAAATGGATCCTAATGTGTCTGTGCAACTTCTTGAGTACGACAAACGTTTTGAGCAATATGGAAATGATTTCACATTCTATGACTACAATCACCCCGAGGAGTTACCATCAGAATTGAAGAATTCCTACAAAGTTATAGTTGCTGATCCTCCTTACTTGGTGAAGTGCAGAAAGAAAGTGCAGCTGAGATCTTGGGCTTGCATCCTTGTGGTTTTAGACCCCATCACTCCAGTAAACTTGGAAATGAATTTCGGCTGTTTTCTAACTATGACCCTGAAACGAGACTAG
Protein sequence

>MsG0180003118.01.T01

MAEQLELNPNSVTELSEDDDTPVLSSHALSALKEFLSEQQSHSDATGDNSDEVSLVSEDWRLSQFWYDSETAKTVAEEVLTLCSNGVDSRVACIACPTLYAYLKKMDPNVSVQLLEYDKRFEQYGNDFTFYDYNHPEELPSELKNSYKVIVADPPYLVKCRKKVQLRSWACILVVLDPITPVNLEMNFGCFLTMTLKRD*