AlfalfaGEDB | MsG0480022889.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022889.01

KEGG: -
GO: GO:0046856
PFAM: PF03372

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022889.01.T01	XP_039684424.1	97.619	420	10	0	1	420	1	420	0	857

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022889.01.T01	Q9SIS4	64.516	403	130	6	7	397	1	402	0	535

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022889.01.T01	A0A396GP95	97.619	420	10	0	1	420	1	420	0.0	857

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048652.01	MsG0480022889.01	0.807488	4.932165e-50	2.750748e-47
MsG0180001108.01	MsG0480022889.01	0.813752	2.183179e-51	1.437866e-48
MsG0380012913.01	MsG0480022889.01	0.817295	3.552141e-52	2.576619e-49
MsG0380012918.01	MsG0480022889.01	0.813172	2.928047e-51	1.898215e-48
MsG0480018299.01	MsG0480022889.01	0.809984	1.443770e-50	8.600406e-48
MsG0480020722.01	MsG0480022889.01	0.822914	1.835398e-53	1.557225e-50
MsG0480022889.01	MsG0480023322.01	0.801965	7.017841e-49	3.396375e-46
MsG0480022889.01	MsG0580026162.01	0.805065	1.598206e-49	8.374747e-47
MsG0480022889.01	MsG0680031841.01	0.823090	1.670412e-53	1.424293e-50
MsG0480022889.01	MsG0780038307.01	0.813240	2.828677e-51	1.837192e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022889.01.T01	MTR_1g038810	69.213	445	105	5	7	420	9	452	0.0	616
MsG0480022889.01.T01	MTR_1g038810	68.315	445	105	6	7	420	9	448	0.0	602
MsG0480022889.01.T01	MTR_6g072010	55.425	341	131	2	61	381	47	386	3.70e-141	408
MsG0480022889.01.T01	MTR_6g072010	55.425	341	131	2	61	381	58	397	1.76e-140	407
MsG0480022889.01.T01	MTR_7g100070	42.786	402	191	8	8	382	11	400	3.01e-102	311
MsG0480022889.01.T01	MTR_7g100070	42.893	401	191	8	8	382	11	399	4.91e-102	311
MsG0480022889.01.T01	MTR_7g100070	42.786	402	191	8	8	382	51	440	1.67e-101	311
MsG0480022889.01.T01	MTR_6g009260	45.506	356	166	6	58	386	54	408	1.26e-100	307
MsG0480022889.01.T01	MTR_8g091360	54.393	239	104	2	146	381	315	551	5.84e-84	268
MsG0480022889.01.T01	MTR_8g091360	51.852	81	37	2	51	130	131	210	2.41e-17	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022889.01.T01	AT2G01900	64.516	403	130	6	7	397	9	410	0.0	536
MsG0480022889.01.T01	AT2G01900	64.516	403	130	6	7	397	1	402	0.0	535
MsG0480022889.01.T01	AT2G01900	63.027	403	127	7	7	397	1	393	0.0	516
MsG0480022889.01.T01	AT2G37440	45.843	421	178	10	8	382	11	427	2.23e-108	328
MsG0480022889.01.T01	AT2G37440	45.843	421	178	10	8	382	11	427	2.23e-108	328
MsG0480022889.01.T01	AT2G37440	48.286	350	148	5	62	382	1	346	2.76e-101	307
MsG0480022889.01.T01	AT5G65090	56.067	239	100	2	146	381	199	435	7.72e-87	272
MsG0480022889.01.T01	AT5G65090	45.783	83	44	1	61	143	11	92	9.31e-18	85.5
MsG0480022889.01.T01	AT5G65090	56.067	239	100	2	146	381	262	498	2.27e-86	273
MsG0480022889.01.T01	AT5G65090	45.783	83	44	1	61	143	74	155	1.55e-17	85.1

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Find 79 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGCGAGCACCAGCT+TGG	0.572374	4:-78114729	MsG0480022889.01.T01:intron
AAACGTAGATGATTTGTTGG+AGG	0.529826	4:-78116740	MsG0480022889.01.T01:CDS
AACAAAGGTTCATCATAACT+AGG	0.611095	4:+78116990	None:intergenic
AACAGTTCCTAATCATCCCA+AGG	0.629549	4:-78116937	MsG0480022889.01.T01:CDS
AAGATACTCAAGAAGCGACT+AGG	0.561529	4:-78117038	MsG0480022889.01.T01:CDS
AATCAAGACTATCAGATCAT+AGG	0.423602	4:-78114296	MsG0480022889.01.T01:CDS
AATCAGAAAAGCTTTGAATA+AGG	0.342999	4:-78116492	MsG0480022889.01.T01:CDS
AATGAGATGTTTAGGAAACA+AGG	0.621139	4:-78116315	MsG0480022889.01.T01:intron
AATGGGAATGAAGCTAATGA+TGG	0.553046	4:-78114875	MsG0480022889.01.T01:intron
AATTCAAACAAAGGACCTCT+AGG	0.548525	4:+78115650	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAGGTTCATCATAACT+AGG	+	Chr4:78114227-78114246	None:intergenic	30.0%
AATCAAGACTATCAGATCAT+AGG	-	Chr4:78116918-78116937	MsG0480022889.01.T01:intron	30.0%
AATGAGATGTTTAGGAAACA+AGG	-	Chr4:78114899-78114918	MsG0480022889.01.T01:intron	30.0%
ACAATAAACAGAAATCTGGT+TGG	-	Chr4:78116690-78116709	MsG0480022889.01.T01:intron	30.0%
ACTAAAATCATGCATCTCAT+TGG	-	Chr4:78115363-78115382	MsG0480022889.01.T01:intron	30.0%
AGAATAGTATGGTATGGAAA+GGG	-	Chr4:78116866-78116885	MsG0480022889.01.T01:intron	30.0%
AGTGATATATGACATATGTG+AGG	+	Chr4:78115005-78115024	None:intergenic	30.0%
ATATGACATATGTGAGGTTA+TGG	+	Chr4:78114999-78115018	None:intergenic	30.0%
ATCTTATTAGCCACTAATGT+AGG	+	Chr4:78114161-78114180	None:intergenic	30.0%
ATGAATGGCAACAATTTAAG+AGG	-	Chr4:78116367-78116386	MsG0480022889.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	78114134	78117102	78114134	ID=MsG0480022889.01;Name=MsG0480022889.01
Chr4	mRNA	78114134	78117102	78114134	ID=MsG0480022889.01.T01;Parent=MsG0480022889.01;Name=MsG0480022889.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|7\|0\|420
Chr4	exon	78116921	78117102	78116921	ID=MsG0480022889.01.T01:exon:8707;Parent=MsG0480022889.01.T01
Chr4	exon	78116706	78116813	78116706	ID=MsG0480022889.01.T01:exon:8706;Parent=MsG0480022889.01.T01
Chr4	exon	78116316	78116595	78116316	ID=MsG0480022889.01.T01:exon:8705;Parent=MsG0480022889.01.T01
Chr4	exon	78115626	78115810	78115626	ID=MsG0480022889.01.T01:exon:8704;Parent=MsG0480022889.01.T01
Chr4	exon	78114975	78115083	78114975	ID=MsG0480022889.01.T01:exon:8703;Parent=MsG0480022889.01.T01
Chr4	exon	78114730	78114884	78114730	ID=MsG0480022889.01.T01:exon:8702;Parent=MsG0480022889.01.T01
Chr4	exon	78114134	78114377	78114134	ID=MsG0480022889.01.T01:exon:8701;Parent=MsG0480022889.01.T01
Chr4	CDS	78116921	78117102	78116921	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01
Chr4	CDS	78116706	78116813	78116706	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01
Chr4	CDS	78116316	78116595	78116316	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01
Chr4	CDS	78115626	78115810	78115626	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01
Chr4	CDS	78114975	78115083	78114975	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01
Chr4	CDS	78114730	78114884	78114730	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01
Chr4	CDS	78114134	78114377	78114134	ID=MsG0480022889.01.T01:cds;Parent=MsG0480022889.01.T01

Gene Sequence

>MsG0480022889.01.T01

ATGCCATTTCTGTATAACATGTGGCCTACATTAGTGGCTAATAAGATACTCAAGAAGCGACTAGGAAGCACCAACTTCATAGCAGATTATCCTAGTTATGATGAACCTTTGTTGAATTTTGCAGACATTGATCATAGTTCTGAAACAGTTCCTAATCATCCCAAGGACAAACACAAATACAAGATTTTTGTTAGTACATGGAACATAGGTGGGATTGCACCAGATGAAGATTTAAACGTAGATGATTTGTTGGAGGCAAAAAACAACTCCTGTGACATCTATGTACTTGGGTTTCAAGAAATAGTGCCTCTAAAAGCTTCAAATGTATTGGGATCAGAAAACAATGAAATTTCCAATAAATGGAATTCCATAATCAGAAAAGCTTTGAATAAGGATCATAGAGACAAAGTTCATAGTGAATCCACACATGATGATTTCCAATGTATAATTAGCAAACAAATGGTTGGAATATTCATATCTGTATGGATAAGGAGAGATATTCGTCCATTCATTCAACATCCAAGTGTGTCATGCATAGGTTGTGGCATAATGAGATGTTTAGGAAACAAGGGTTCTGTATCAGTGAGATTTCAACTACATGAAGCAAGCTTCTGCTTTGTGTGTAGCCATCTAGCTTCAGGGGGCAAACAAGGGGATGAGAAGTGTAGAAATTCTAATGTTGCTGAAATTTTTTCTAGGACTAGCTTTCCTAGAGGTCCTTTGTTTGAATTGCCAAGAAATATTCTAGACCATGATCATGTAATATTGCTTGGAGATTTAAATTATAGGATATCTCTTCCAGAGGAAACGACACGCTTACTTGTAGAGAAAAAGGACTGGGATTCCTTATTAGAAAATGATCAGCTAATGATGGAGTTAATGAATGGCAACAATTTAAGAGGATGGCATGAAGGACCAATCAAATTTGCTCCTACCTACAAATATTGTCCAAATTCCGATATATATTATGGTTGCTGTTGTCATGGGAAAAAGATAGAAAAGAGGCGAGCACCAGCTTGGTGTGATAGAATAGTATGGTATGGAAAGGGTTTGAAACAACTGGAGTACACAAGGAGTGAATCAAGACTATCAGATCATAGGCCTGTTAAGGCAATTTTTACTGCAGAAATAAGGGTTTCATCTGAGGTCAAAAGCTTACAGAATTTGTCTCTATCAGAAAGATTTGAACAAATTAAAACTCCTTTTGAAGTTTCTACCACAGATGAACTTGTATGTAGAAAACAATCAAGCTTCCGGTTGTAA

Protein sequence

>MsG0480022889.01.T01

MPFLYNMWPTLVANKILKKRLGSTNFIADYPSYDEPLLNFADIDHSSETVPNHPKDKHKYKIFVSTWNIGGIAPDEDLNVDDLLEAKNNSCDIYVLGFQEIVPLKASNVLGSENNEISNKWNSIIRKALNKDHRDKVHSESTHDDFQCIISKQMVGIFISVWIRRDIRPFIQHPSVSCIGCGIMRCLGNKGSVSVRFQLHEASFCFVCSHLASGGKQGDEKCRNSNVAEIFSRTSFPRGPLFELPRNILDHDHVILLGDLNYRISLPEETTRLLVEKKDWDSLLENDQLMMELMNGNNLRGWHEGPIKFAPTYKYCPNSDIYYGCCCHGKKIEKRRAPAWCDRIVWYGKGLKQLEYTRSESRLSDHRPVKAIFTAEIRVSSEVKSLQNLSLSERFEQIKTPFEVSTTDELVCRKQSSFRL*